RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10489
         (147 letters)



>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 15  STAIVFMYNPVATDSQLCLQSAPKGNPTYFVHTPHALMLQSTDRSTREICVIEAVWTCQS 74
           + ++ F  + VA   ++ +     G   + VH  HA  +  T      I +   ++   S
Sbjct: 496 TASVAFGGDVVAVGGKVAMMPIVLGTADFMVHHIHAFTIHVTVL----ILLKGVLFARSS 551

Query: 75  TSMDGRLSKLLGFICELVESSQTVQQHIIQNRGFLAISYMLQKLS 119
             +  + +    F C+      T Q     +  FL + +M   +S
Sbjct: 552 RLIPDKANLGFRFPCDGPGRGGTCQVS-GWDHVFLGLFWMYNCIS 595


>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas
          sp. WBC-3 [TaxId: 165468]}
          Length = 294

 Score = 24.9 bits (53), Expect = 4.6
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 7  TVLYDGKLSTAIVFMYNPVATDSQLCLQSAPKGNP------TYFVHTPHALML 53
          T L DG ++  +    N  A  +Q  L  + +  P       Y V+T   L+L
Sbjct: 23 TALSDGTVALPVDKRLNQPAPKTQSALAKSFQKAPLETSVTGYLVNTGSKLVL 75


>d1xrua1 b.82.1.13 (A:1-277) 5-keto-4-deoxyuronate isomerase KduI
           {Escherichia coli [TaxId: 562]}
          Length = 277

 Score = 24.4 bits (53), Expect = 7.3
 Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 3   LKEGTVLYDGKLSTAIVFMYNPVATDSQLCLQSAP--KGNPTYFV 45
           +     LY GK +  +VF      T ++     AP     PT  V
Sbjct: 98  IGHRDALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTTYPTKKV 142


>d1jzna_ d.169.1.1 (A:) Galactose-specific C-type lectin {Western
           diamondback rattlesnake (Crotalus atrox) [TaxId: 8730]}
          Length = 135

 Score = 23.6 bits (49), Expect = 8.6
 Identities = 8/48 (16%), Positives = 11/48 (22%)

Query: 43  YFVHTPHALMLQSTDRSTREICVIEAVWTCQSTSMDGRLSKLLGFICE 90
                      Q      +E CV     T      D        F+C+
Sbjct: 85  SCTDYLTWDKNQPDHYQNKEFCVELVSLTGYRLWNDQVCESKDAFLCQ 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0650    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,140
Number of extensions: 18121
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 4
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (22.8 bits)