BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10490
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
pdb|1MKX|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha-
Thrombin And Prethrombin-2: Movement Of The Yppw Segment
And Active Site Residues Upon Ligand Binding
Length = 308
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 64 IFEDIREGRIQEGVGAETHLSAGQDNMLYCQGD------IALVTNRWVFSS 108
+FE EGRI EG AE LS Q ML+ + +L+++RWV ++
Sbjct: 41 LFESYIEGRIVEGQDAEVGLSPWQ-VMLFRKSPQELLCGASLISDRWVLTA 90
>pdb|3DBG|A Chain A, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3DBG|B Chain B, Crystal Structure Of Cytochrome P450 170a1 (Cyp170a1) From
Streptomyces Coelicolor
pdb|3EL3|A Chain A, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
pdb|3EL3|B Chain B, Distinct Monooxygenase And Farnesene Synthase Active Sites
In Cytochrome P450 170a1
Length = 467
Score = 28.5 bits (62), Expect = 0.93, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 5 GHNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWII 64
G G+ EI +AIL + A T + L++ + + HAD + E + G +
Sbjct: 256 GDPIGEQEIHDQVVAILTPGSETI-ASTIMWLLQALADHPEHADRIRDEVEAVTGGRPVA 314
Query: 65 FEDIREGR 72
FED+R+ R
Sbjct: 315 FEDVRKLR 322
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 69 REGRIQEGVGAETHLSAGQDNMLYCQGDIALVTNRWVFSSE 109
REGR+ +GA+ + AG D ++ C GD +L T +F SE
Sbjct: 84 REGRL---LGAQHLIEAGVDALIVCGGDGSL-TGADLFRSE 120
>pdb|1TUX|A Chain A, High Resolution Crystal Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 301
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|1I1W|A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
pdb|1I1X|A Chain A, 1.11 A Atomic Resolution Structure Of A Thermostable
Xylanase From Thermoascus Aurantiacus
Length = 303
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|2BNJ|A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes
Arabinose Decorations Of Xylan As Significant Substrate
Specificity Determinants
Length = 303
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|1GOK|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Crystal Form Ii
pdb|1GOO|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Cryocooled Glycerol Complex
pdb|1GOM|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus -
Crystal Form I
pdb|1GOR|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-
Xylobiose Complex At 100 K
pdb|1GOQ|A Chain A, Thermostable Xylanase I From Thermoascus Aurantiacus-Room
Temperature Xylobiose Complex
Length = 303
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|1WNB|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WNB|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase (Complexed With Nadh And Betaine
Aldehyde)
pdb|1WND|A Chain A, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|B Chain B, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|C Chain C, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
pdb|1WND|D Chain D, Escherichia Coli Ydcw Gene Product Is A Medium-Chain
Aldehyde Dehydrogenase As Determined By Kinetics And
Crystal Stucture
Length = 495
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 25 VRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAETH 82
VR + I EH+++ H + TH G I+F+D + EGV +
Sbjct: 238 VRMVSLTGSIATGEHIIS---HTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGY 294
Query: 83 LSAGQDNMLYCQ 94
+AGQD C+
Sbjct: 295 YNAGQDCTAACR 306
>pdb|1K6A|A Chain A, Structural Studies On The Mobility In The Active Site Of
The Thermoascus Aurantiacus Xylanase I
Length = 303
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|3O2L|A Chain A, Crystal Structure Of An Inactive Kemp Elimination Design
Hg-1
Length = 317
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 203 DGIGSQTHLSAGQ 215
>pdb|3NYD|A Chain A, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
pdb|3NYD|B Chain B, Crystal Structure Of Kemp Eliminase Hg-2 Complexed With
Transition State Analog 5-Nitro Benzotriazole
Length = 316
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 75 EGVGAETHLSAGQ 87
+G+G++THLSAGQ
Sbjct: 202 DGIGSQTHLSAGQ 214
>pdb|3HYL|A Chain A, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3HYL|B Chain B, Crystal Structure Of Transketolase From Bacillus Anthracis
pdb|3M49|A Chain A, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
pdb|3M49|B Chain B, Crystal Structure Of Transketolase Complexed With Thiamine
Diphosphate From Bacillus Anthracis
Length = 690
Score = 25.4 bits (54), Expect = 7.5, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 70 EGRIQEGVGAET-----HLSAGQDNMLYCQGDIAL--VTNRWVFSSEQERMSNFG 117
+G + EGV AE HL G+ +LY DI+L NR S ++R +G
Sbjct: 181 DGDLXEGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRSFSESVEDRYKAYG 235
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,706,889
Number of Sequences: 62578
Number of extensions: 134748
Number of successful extensions: 210
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 14
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)