BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10490
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++ D ++A+ GV + +
Sbjct: 107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDSMIADLLVDMLGVLASYNLTV 166
Query: 69 REGRI 73
RE ++
Sbjct: 167 RELKL 171
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE-DI 68
QAE+WS+F AIL+KS+RNLQ CT++GL+E VL ++ D ++A+ GV + +
Sbjct: 107 QAEVWSMFTAILKKSIRNLQVCTEVGLVEKVLGKIEKVDNMIADLLVDMLGVLASYNLTV 166
Query: 69 REGRI 73
RE ++
Sbjct: 167 RELKL 171
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 1 MGKLGHNCG---QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
M +L +C QAEIWS+F AILRKSVRNLQ T++GLIE VL ++ D ++A+
Sbjct: 121 MTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIAD 176
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 1 MGKLGHNCG---QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
M +L +C QAEIWS+F AILRKSVRNLQ T++GLIE VL ++ D ++A+
Sbjct: 111 MTELLEHCDVTCQAEIWSMFTAILRKSVRNLQTSTEVGLIEQVLLKMSAVDDMIAD 166
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 36/44 (81%)
Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53
Q EIWS+F+A+++KS RNL+ACT +GLI VL+ LP A P++A+
Sbjct: 206 QNEIWSLFLAVMKKSNRNLEACTRVGLISKVLDILPEAPPLLAD 249
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%), Gaps = 6/50 (12%)
Query: 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEH------VLNRLPHADPVVAE 53
Q EIWS+F+A+++KS RNL+ACT +GLI VL+ LP A P++A+
Sbjct: 207 QNEIWSLFLAVMKKSNRNLEACTRVGLISKNFFLNLVLDLLPEAPPLLAD 256
>sp|Q8ZPC9|ABDH_SALTY Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=prr PE=3 SV=2
Length = 474
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 23 KSVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAE 80
+ VR + I EH+L H P + TH G I+F+D + +GV
Sbjct: 215 EKVRMVSLTGSIATGEHILR---HTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTF 271
Query: 81 THLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSN 115
+AGQD C+ + R ++ + E++ N
Sbjct: 272 GFYNAGQDCTAACR----IYAQRGIYDALVEKLGN 302
>sp|Q5PHV8|ABDH_SALPA Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi A
(strain ATCC 9150 / SARB42) GN=prr PE=3 SV=2
Length = 474
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 23 KSVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAE 80
+ VR + I EH+L H P + TH G I+F+D + +GV
Sbjct: 215 EKVRMVSLTGSIATGEHILR---HTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTF 271
Query: 81 THLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSN 115
+AGQD C+ + R ++ + E++ N
Sbjct: 272 GFYNAGQDCTAACR----IYAQRGIYDALVEKLGN 302
>sp|A9MYQ4|ABDH_SALPB Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella paratyphi B
(strain ATCC BAA-1250 / SPB7) GN=prr PE=3 SV=1
Length = 474
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 23 KSVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAE 80
+ VR + I EH+L H P + TH G I+F+D + +GV
Sbjct: 215 EKVRMVSLTGSIATGEHILR---HTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTF 271
Query: 81 THLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSN 115
+AGQD C+ + R ++ + E++ N
Sbjct: 272 GFYNAGQDCTAACR----IYAQRGIYDALVEKLGN 302
>sp|Q8Z747|ABDH_SALTI Gamma-aminobutyraldehyde dehydrogenase OS=Salmonella typhi GN=prr
PE=3 SV=2
Length = 474
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 9/95 (9%)
Query: 23 KSVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAE 80
+ VR + I EH+L H P + TH G I+F+D + +GV
Sbjct: 215 EKVRMVSLTGSIATGEHILR---HTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVRTF 271
Query: 81 THLSAGQDNMLYCQGDIALVTNRWVFSSEQERMSN 115
+AGQD C+ + R ++ + E++ N
Sbjct: 272 GFYNAGQDCTAACR----IYAQRGIYDALVEKLGN 302
>sp|P52132|YFJQ_ECOLI UPF0380 protein YfjQ OS=Escherichia coli (strain K12) GN=yfjQ PE=3
SV=1
Length = 273
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 43 RLPHADPVVAETHEGSYGVWIIFEDIREGR 72
R+PH VV++ EG+Y V IFE + E R
Sbjct: 138 RVPHKGDVVSQVIEGAYEVLGIFERVEEKR 167
>sp|B5Z0W0|ABDH_ECO5E Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=prr PE=3 SV=1
Length = 474
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD + C+
Sbjct: 273 YYNAGQDCTVACR 285
>sp|Q8X9W5|ABDH_ECO57 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O157:H7
GN=prr PE=3 SV=1
Length = 474
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD + C+
Sbjct: 273 YYNAGQDCTVACR 285
>sp|Q32FQ5|ABDH_SHIDS Gamma-aminobutyraldehyde dehydrogenase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=prr PE=3 SV=1
Length = 474
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDANIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|Q1RBX3|ABDH_ECOUT Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain
UTI89 / UPEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|Q8FHK7|ABDH_ECOL6 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|Q0THX6|ABDH_ECOL5 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|A1AB46|ABDH_ECOK1 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O1:K1 /
APEC GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|B7MUN0|ABDH_ECO81 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O81
(strain ED1a) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|B7MMS8|ABDH_ECO45 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|B7URJ0|ABDH_ECO27 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|B1LFH3|ABDH_ECOSM Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=prr PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
>sp|B7LR95|ABDH_ESCF3 Gamma-aminobutyraldehyde dehydrogenase OS=Escherichia fergusonii
(strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=prr
PE=3 SV=1
Length = 474
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 24 SVRNLQACTDIGLIEHVLNRLPHADPVVAETHE--GSYGVWIIFEDIREGRIQEGVGAET 81
VR + I EH+++ H P + TH G I+F+D + EGV
Sbjct: 216 KVRMVSLTGSIATGEHIIS---HTAPSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFG 272
Query: 82 HLSAGQDNMLYCQ 94
+ +AGQD C+
Sbjct: 273 YYNAGQDCTAACR 285
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,248,866
Number of Sequences: 539616
Number of extensions: 1670514
Number of successful extensions: 3098
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 3091
Number of HSP's gapped (non-prelim): 24
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)