Query psy10490
Match_columns 121
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 46136
Date Fri Aug 16 19:30:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10490.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10490hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10508 Proteasom_PSMB: Prote 89.3 0.86 1.9E-05 38.9 5.3 69 10-78 177-245 (503)
2 cd04386 RhoGAP_nadrin RhoGAP_n 64.2 17 0.00036 27.2 4.7 54 11-68 95-148 (203)
3 PF00514 Arm: Armadillo/beta-c 59.1 31 0.00066 19.4 4.6 38 26-63 3-40 (41)
4 cd00020 ARM Armadillo/beta-cat 55.1 48 0.001 20.4 5.1 56 12-67 26-81 (120)
5 smart00185 ARM Armadillo/beta- 53.8 29 0.00063 18.4 3.4 36 27-62 4-39 (41)
6 cd04384 RhoGAP_CdGAP RhoGAP_Cd 53.4 37 0.00081 25.6 5.0 54 11-68 93-146 (195)
7 cd04372 RhoGAP_chimaerin RhoGA 51.5 43 0.00093 25.0 5.0 54 11-68 92-145 (194)
8 PRK13907 rnhA ribonuclease H; 49.8 27 0.00059 23.6 3.4 62 8-69 41-105 (128)
9 cd04400 RhoGAP_fBEM3 RhoGAP_fB 49.0 49 0.0011 24.5 4.9 38 31-68 116-153 (190)
10 PF00620 RhoGAP: RhoGAP domain 48.9 35 0.00077 23.1 3.9 55 10-68 73-127 (151)
11 cd04377 RhoGAP_myosin_IX RhoGA 48.6 51 0.0011 24.4 5.0 54 11-68 88-141 (186)
12 COG4317 Uncharacterized protei 48.6 25 0.00055 25.9 3.3 38 30-69 10-47 (93)
13 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 48.1 49 0.0011 25.1 4.9 54 11-68 91-144 (196)
14 cd04385 RhoGAP_ARAP RhoGAP_ARA 46.5 59 0.0013 24.1 5.0 54 11-68 90-143 (184)
15 cd06222 RnaseH RNase H (RNase 43.1 71 0.0015 19.2 4.2 53 6-58 39-95 (130)
16 cd04402 RhoGAP_ARHGAP20 RhoGAP 42.8 61 0.0013 24.1 4.7 53 12-68 88-140 (192)
17 cd04403 RhoGAP_ARHGAP27_15_12_ 42.0 72 0.0016 23.6 4.9 53 12-68 92-144 (187)
18 cd04396 RhoGAP_fSAC7_BAG7 RhoG 41.4 78 0.0017 24.4 5.2 58 11-68 108-178 (225)
19 cd04381 RhoGap_RalBP1 RhoGap_R 40.2 66 0.0014 23.8 4.5 53 12-68 93-145 (182)
20 cd04397 RhoGAP_fLRG1 RhoGAP_fL 39.9 68 0.0015 24.4 4.6 37 33-69 119-155 (213)
21 cd04404 RhoGAP-p50rhoGAP RhoGA 39.1 79 0.0017 23.4 4.7 40 29-68 109-148 (195)
22 PRK14889 VKOR family protein; 38.4 9.6 0.00021 28.1 -0.2 17 103-121 49-65 (143)
23 PF02985 HEAT: HEAT repeat; I 38.3 65 0.0014 17.5 3.2 30 36-65 1-30 (31)
24 PF11807 DUF3328: Domain of un 38.0 15 0.00034 25.6 0.8 18 90-107 173-190 (217)
25 cd04374 RhoGAP_Graf RhoGAP_Gra 36.7 89 0.0019 24.0 4.8 54 11-68 107-160 (203)
26 cd04375 RhoGAP_DLC1 RhoGAP_DLC 36.6 93 0.002 24.1 5.0 53 11-67 93-145 (220)
27 cd04383 RhoGAP_srGAP RhoGAP_sr 35.2 99 0.0021 23.1 4.8 54 11-68 93-146 (188)
28 cd04406 RhoGAP_myosin_IXA RhoG 33.8 1.1E+02 0.0025 22.8 4.9 54 11-68 88-141 (186)
29 cd04409 RhoGAP_PARG1 RhoGAP_PA 31.8 1.5E+02 0.0033 22.6 5.4 57 11-67 89-163 (211)
30 cd04407 RhoGAP_myosin_IXB RhoG 31.6 1.3E+02 0.0029 22.5 4.9 53 12-68 89-141 (186)
31 PF00566 RabGAP-TBC: Rab-GTPas 30.5 89 0.0019 21.8 3.6 57 11-67 5-85 (214)
32 PF14222 MOR2-PAG1_N: Cell mor 29.7 1.1E+02 0.0023 27.4 4.8 52 14-65 13-77 (552)
33 TIGR03745 conj_TIGR03745 integ 29.7 20 0.00043 26.7 0.2 17 59-75 60-76 (104)
34 PF10798 YmgB: Biofilm develop 29.6 1.3E+02 0.0027 19.9 4.1 49 17-65 7-56 (61)
35 cd04382 RhoGAP_MgcRacGAP RhoGA 29.6 1.5E+02 0.0032 22.5 4.9 52 11-67 90-141 (193)
36 cd04378 RhoGAP_GMIP_PARG1 RhoG 28.2 1.6E+02 0.0036 22.1 5.0 58 11-68 89-156 (203)
37 PF13456 RVT_3: Reverse transc 28.0 55 0.0012 19.6 2.0 61 9-69 2-65 (87)
38 PF02671 PAH: Paired amphipath 27.6 1.4E+02 0.003 17.6 4.0 40 12-53 2-41 (47)
39 PF07235 DUF1427: Protein of u 27.0 70 0.0015 23.4 2.7 35 34-70 13-47 (90)
40 KOG4424|consensus 26.9 46 0.001 31.3 2.1 32 36-67 207-240 (623)
41 cd04373 RhoGAP_p190 RhoGAP_p19 26.2 1.9E+02 0.0041 21.5 4.9 35 33-67 107-141 (185)
42 cd04379 RhoGAP_SYD1 RhoGAP_SYD 25.4 2.4E+02 0.0052 21.7 5.5 35 34-68 116-150 (207)
43 PF08520 DUF1748: Fungal prote 24.1 59 0.0013 22.2 1.8 59 1-60 1-62 (70)
44 cd00020 ARM Armadillo/beta-cat 24.0 1.8E+02 0.004 17.8 4.9 32 29-60 85-116 (120)
45 cd00159 RhoGAP RhoGAP: GTPase- 23.8 2.4E+02 0.0052 19.1 4.7 34 33-66 91-124 (169)
46 smart00324 RhoGAP GTPase-activ 23.4 2.4E+02 0.0052 19.7 4.8 36 33-68 95-130 (174)
47 smart00756 VKc Family of likel 23.3 27 0.00058 25.3 -0.0 17 103-121 48-64 (142)
48 cd04395 RhoGAP_ARHGAP21 RhoGAP 23.2 1E+02 0.0022 22.9 3.1 35 34-68 113-147 (196)
49 PF14696 Glyoxalase_5: Hydroxy 22.9 77 0.0017 23.7 2.4 18 86-103 40-57 (139)
50 PLN00211 predicted protein; Pr 22.9 51 0.0011 22.8 1.3 17 8-24 34-50 (61)
51 cd04393 RhoGAP_FAM13A1a RhoGAP 22.7 2.6E+02 0.0057 20.6 5.1 55 11-68 93-147 (189)
52 PF11190 DUF2976: Protein of u 21.5 34 0.00074 24.3 0.2 18 58-75 43-60 (87)
53 PF13925 Katanin_con80: con80 21.4 3.2E+02 0.007 20.2 5.4 63 3-67 39-102 (164)
54 PF07309 FlaF: Flagellar prote 21.3 58 0.0012 23.4 1.3 42 12-53 53-94 (113)
No 1
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=89.26 E-value=0.86 Score=38.86 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccccchhccccc
Q psy10490 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQEGVG 78 (121)
Q Consensus 10 QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~~~~~~~~~~ 78 (121)
.-.+-++++-|.+.|-..++.|...|++++++..|.+-|-++---.+|++.-||..+.-.+--.+.|+-
T Consensus 177 R~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~ 245 (503)
T PF10508_consen 177 RCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIF 245 (503)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHH
Confidence 345788999999999999999999999999999999955555568899999999977655544555543
No 2
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=64.22 E-value=17 Score=27.25 Aligned_cols=54 Identities=13% Similarity=0.092 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++...|+.+.+.+ ....|...+++++..||..+..+-..|+..+..+++|++.
T Consensus 95 ~~~~~~~~~~~~~~----~~~~~~~~l~~ll~~LP~~n~~~L~~l~~~l~~v~~~~~~ 148 (203)
T cd04386 95 YNLYEDWVQAANKP----DEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDE 148 (203)
T ss_pred HHHHHHHHHHHccC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555555554433 3345677899999999999999999999999999999864
No 3
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=59.09 E-value=31 Score=19.43 Aligned_cols=38 Identities=29% Similarity=0.304 Sum_probs=28.7
Q ss_pred hhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhh
Q psy10490 26 RNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWI 63 (121)
Q Consensus 26 RNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLA 63 (121)
.|-++--+.|.|+.+++.|.+.+..|-.--+--|+=|+
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56677789999999999999999887665544444443
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=55.12 E-value=48 Score=20.45 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
..+..+..+.+.+-.+.+...+.|.|+.+++.|.+.++.+..--+..|+-|+....
T Consensus 26 ~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 26 EAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 34444555555556666777777999999999999998888888888888877653
No 5
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=53.80 E-value=29 Score=18.39 Aligned_cols=36 Identities=19% Similarity=0.164 Sum_probs=24.9
Q ss_pred hhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHh
Q psy10490 27 NLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVW 62 (121)
Q Consensus 27 NLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVL 62 (121)
|-+...+.|.|+.+++.|+..++-+-...+..|.-|
T Consensus 4 ~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 4 QKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 556677788999999999876766555555555444
No 6
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=53.41 E-value=37 Score=25.61 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+.+.++.. .-.++..++.++..||..+..+-..|++.|.-++.+|++
T Consensus 93 ~~~y~~~~~~~~~~~----~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 146 (195)
T cd04384 93 YQLYEKFSEAVSAAS----DEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSI 146 (195)
T ss_pred HHHHHHHHHHHhcCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 455666766665421 224567788999999999999999999999999998876
No 7
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=51.54 E-value=43 Score=24.96 Aligned_cols=54 Identities=15% Similarity=0.060 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+..|+...+.+.. -.++.-+++++..||..+..+-..|+..|.-++++|+.
T Consensus 92 ~~~~~~~~~~~~~~~~----~~~~~~l~~~l~~LP~~n~~~L~~L~~~L~~v~~~s~~ 145 (194)
T cd04372 92 YDTYPKFIDAAKISNP----DERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKD 145 (194)
T ss_pred HHHHHHHHHHHhcCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4556666665543321 23566788899999999999999999999999999874
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=49.78 E-value=27 Score=23.62 Aligned_cols=62 Identities=16% Similarity=0.119 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHHH---HhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 8 CGQAEIWSVFIAIL---RKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 8 ~~QAEIWS~FiAIL---RKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
+.+||+|.+.-|+- +..++.+..+|+.-+|.+.+..=...++...+++-++...+.+++..+
T Consensus 41 n~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~~~~~~~~~l~~~~~~l~~~f~~~~ 105 (128)
T PRK13907 41 NHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEYAKNKMFAPLLEEALQYIKSFDLFF 105 (128)
T ss_pred CcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHHhcChhHHHHHHHHHHHHhcCCceE
Confidence 46899999887754 445567888999988888777633344566788888888777776553
No 9
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=48.97 E-value=49 Score=24.53 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=33.0
Q ss_pred hhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 31 CTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 31 CSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
..+..-++++++.||..+..+-..|+.++.-+++||+.
T Consensus 116 ~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 153 (190)
T cd04400 116 SQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDV 153 (190)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34556778899999999999999999999999999974
No 10
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=48.95 E-value=35 Score=23.11 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 10 QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
-.+.+-.|+++.+..... .++..++.++..|+.....+-..++..+..++.|++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~lp~~~~~~l~~l~~~l~~v~~~~~~ 127 (151)
T PF00620_consen 73 PSELYDKFIAASKSADEE----EQIEAIRSLLQSLPPSNRSLLKYLIELLSKVSDNSEI 127 (151)
T ss_dssp THHHHHHHHHHHTSSSHH----HHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHTHHH
T ss_pred hhhHHHHHhhhhccchhh----HHHHHHHHhhhccccccceeehhcccchhhhhccccc
Confidence 345666666644432222 3477899999999999999889999999999999885
No 11
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=48.61 E-value=51 Score=24.41 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+++.-|+.+.... ..+.++.-++.++..||.....+-..|+..+.-.+.+|+.
T Consensus 88 ~~~~~~~~~~~~~~----~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~s~~ 141 (186)
T cd04377 88 FELYENFLRAMELE----EKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEV 141 (186)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 45666666555432 3466778889999999999999988899999889988875
No 12
>COG4317 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.58 E-value=25 Score=25.91 Aligned_cols=38 Identities=24% Similarity=0.258 Sum_probs=32.1
Q ss_pred hhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 30 ACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 30 aCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
|---||+|-.+|+.=+-|++.|| |+.++|.|..|.-+.
T Consensus 10 AGllVGiiyaLl~vrsPAPP~iA--lvGllGilvGeq~~p 47 (93)
T COG4317 10 AGLLVGIIYALLKVRSPAPPAIA--LVGLLGILVGEQIVP 47 (93)
T ss_pred hhHHHHHHHHHHhCCCCCCcHHH--HHHHHHHHHHHHHHH
Confidence 33458999999999999999999 999999999887654
No 13
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=48.06 E-value=49 Score=25.11 Aligned_cols=54 Identities=15% Similarity=0.054 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+.+.+.+.. ..+..-+++++..||..+..+=..|+..|.-++++|+.
T Consensus 91 ~~~y~~~~~~~~~~~~----~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 144 (196)
T cd04387 91 DELYPNFAEGIALSDP----VAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEV 144 (196)
T ss_pred HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 5666777776665433 24556688999999999999888999999989988874
No 14
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=46.53 E-value=59 Score=24.11 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+-+.+... .=.++..++.++..||.....+-..++..+.-++.|++.
T Consensus 90 ~~~~~~~~~~~~~~~----~~~~i~~l~~~i~~LP~~n~~~L~~l~~~l~~V~~~~~~ 143 (184)
T cd04385 90 SELHAEWIEAAELEN----KDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDE 143 (184)
T ss_pred HHHHHHHHHHHhCCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 455556665554432 225666788999999999998888999999999999864
No 15
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=43.12 E-value=71 Score=19.16 Aligned_cols=53 Identities=11% Similarity=0.054 Sum_probs=35.9
Q ss_pred chhhhHHHHHHHHHHHH---hhhhhhhhhhhhhHHHHHHhhCCC-CchHHHHHHHHH
Q psy10490 6 HNCGQAEIWSVFIAILR---KSVRNLQACTDIGLIEHVLNRLPH-ADPVVAETHEGS 58 (121)
Q Consensus 6 h~~~QAEIWS~FiAILR---KSiRNLQaCSrVGLIe~vL~RL~~-ad~~IADLLvem 58 (121)
.-+.+||++.++.|+=. ...+++..+|+.-.+-+.+..... .+.....++-++
T Consensus 39 ~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~~~~~~~~~~~~~~~i 95 (130)
T cd06222 39 TTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGWYEGKPVKNVDLWQRL 95 (130)
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhccccCCChhhHHHHHHH
Confidence 44678999999988644 578889999998877777776543 233344444333
No 16
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=42.78 E-value=61 Score=24.10 Aligned_cols=53 Identities=9% Similarity=0.216 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+....|+.+.+.+ ..-.++..+++++..||.....+-..|+.+|.-++.+|+.
T Consensus 88 ~~~~~~~~~~~~~----~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~ 140 (192)
T cd04402 88 DLYEEWMSALDQE----NEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSET 140 (192)
T ss_pred HHHHHHHHHHccC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444555555433 1234566788999999999999999999999999999865
No 17
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=42.01 E-value=72 Score=23.62 Aligned_cols=53 Identities=11% Similarity=0.148 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+...-|+.+.+.+. .-.++.-+++++..||..+..+-..|+..|.-++.+|+.
T Consensus 92 ~~~~~~~~~~~~~~----~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~ 144 (187)
T cd04403 92 SLFNDFVAAIKLSD----YEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEK 144 (187)
T ss_pred HHHHHHHHHHHCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555555554332 234566788899999999999999999999999998874
No 18
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=41.35 E-value=78 Score=24.42 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhhhhh-------------hhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQ-------------ACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQ-------------aCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+++.-|+.++++.-.-.+ .-.+..-+++++..||..+..+-..|+..|.-.+++|+.
T Consensus 108 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 178 (225)
T cd04396 108 LDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLITRLPNLNRQLLLYLLDLLAVFARNSDK 178 (225)
T ss_pred HHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4666777777765422111 112334457889999999999999999999999999874
No 19
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=40.15 E-value=66 Score=23.79 Aligned_cols=53 Identities=13% Similarity=0.074 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+.+..|+.+.++... =.|..-++.++..||..+..+=..|++.|.-++++|+.
T Consensus 93 ~~~~~~~~~~~~~~~----~~r~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 145 (182)
T cd04381 93 ELMPRFEEACGRPTE----AEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELE 145 (182)
T ss_pred HHHHHHHHHcCCCCH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 445555555443322 24667788999999999999988899999888888864
No 20
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.87 E-value=68 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.019 Sum_probs=32.2
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 33 DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 33 rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
+...++.++..||..+..+-..|+..|.-+++||++.
T Consensus 119 ~~~~l~~l~~~LP~~n~~~L~~L~~~L~~V~~~s~i~ 155 (213)
T cd04397 119 RKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHID 155 (213)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4556788899999999999999999999999999873
No 21
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.09 E-value=79 Score=23.37 Aligned_cols=40 Identities=13% Similarity=0.040 Sum_probs=34.7
Q ss_pred hhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 29 QACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 29 QaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+-+.+..-++++++.||.....+-..|+..+.-++.|++.
T Consensus 109 ~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~ 148 (195)
T cd04404 109 DKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQ 148 (195)
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 3466777889999999999999999999999999999874
No 22
>PRK14889 VKOR family protein; Provisional
Probab=38.36 E-value=9.6 Score=28.07 Aligned_cols=17 Identities=35% Similarity=0.510 Sum_probs=13.7
Q ss_pred cceecchhhhhhcCCCCCC
Q psy10490 103 RWVFSSEQERMSNFGVPNP 121 (121)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ 121 (121)
.=|++|+|-+. ||+|||
T Consensus 49 ~~Vl~S~~a~~--fGiP~s 65 (143)
T PRK14889 49 SSVLSSPYARF--LGIPLD 65 (143)
T ss_pred HHHhcCccHHH--cCCchH
Confidence 34788888885 999996
No 23
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=38.34 E-value=65 Score=17.46 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=23.8
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHhhHhhhh
Q psy10490 36 LIEHVLNRLPHADPVVAETHEGSYGVWIIF 65 (121)
Q Consensus 36 LIe~vL~RL~~ad~~IADLLvemLgVLAsY 65 (121)
|++.+++.+.+-++.|=..-++-|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 577888999999999988888888877754
No 24
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=37.97 E-value=15 Score=25.62 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=15.7
Q ss_pred eeeeccceeEEeecceec
Q psy10490 90 MLYCQGDIALVTNRWVFS 107 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~ 107 (121)
.+-|.||..+++-.|+-.
T Consensus 173 ~imC~aD~tl~~~~~~~~ 190 (217)
T PF11807_consen 173 SIMCHADTTLEPFYWVDG 190 (217)
T ss_pred HhhccCCCceeeeeecCC
Confidence 467999999999999865
No 25
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=36.66 E-value=89 Score=24.00 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+++.-|+.+.+... .-.|+.-++.++..||..+..+-..|+..|.-++.+|+.
T Consensus 107 ~~~y~~~i~~~~~~~----~~~ri~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~~ 160 (203)
T cd04374 107 YELHNDFINAAKSEN----LESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKK 160 (203)
T ss_pred HHHHHHHHHHHhCCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 466667777665432 234677888999999999999999999999999998863
No 26
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=36.59 E-value=93 Score=24.05 Aligned_cols=53 Identities=15% Similarity=0.091 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.++...|+++.+.. ....+..-++.++..||.....+-..|+..|.-.+++|+
T Consensus 93 ~~l~~~fi~~~~~~----~~~~~~~~l~~~i~~LP~~n~~~L~~L~~~L~~V~~~s~ 145 (220)
T cd04375 93 NKLSETFIAIFQYV----PKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQ 145 (220)
T ss_pred HHHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777776432 223566778889999999999999999999999999988
No 27
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=35.24 E-value=99 Score=23.14 Aligned_cols=54 Identities=15% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+.+.+... .-.++.-+++++..||.....+-..|+..+.-++.||+.
T Consensus 93 ~~~~~~~~~~~~~~~----~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 146 (188)
T cd04383 93 KERFEDLMSCVKLEN----PTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDE 146 (188)
T ss_pred HHHHHHHHHHHhcCC----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555444221 113456678899999999999999999999999998864
No 28
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=33.77 E-value=1.1e+02 Score=22.84 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+.+.+.+-+ -.++.-+..++..||.+...+-..++..|.-.+.+|+.
T Consensus 88 ~~~y~~~~~~~~~~~~----~~~i~~~~~li~~LP~~n~~~L~~l~~~L~~V~~~s~~ 141 (186)
T cd04406 88 FELYEEFLRAMGLQER----RETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEET 141 (186)
T ss_pred HHHHHHHHHHHhcccH----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 3455556555543322 23455667889999999888888888888888888864
No 29
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=31.80 E-value=1.5e+02 Score=22.57 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhhh--------------hhhhhh----hhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 11 AEIWSVFIAILRKSVRN--------------LQACTD----IGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 11 AEIWS~FiAILRKSiRN--------------LQaCSr----VGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+++.-|+.+.+.+.+. -+.|++ +--+++++..||..+..+-..|+..|.-++.+|+
T Consensus 89 ~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li~~LP~~n~~~L~~L~~~L~~V~~~s~ 163 (211)
T cd04409 89 FRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLLRQLPAPNYNTLQFLIVHLHRVSEQAE 163 (211)
T ss_pred HHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHcccc
Confidence 67788888888643210 123443 3457789999999999999999999999998876
No 30
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=31.56 E-value=1.3e+02 Score=22.50 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+.+.-|+...++... -.+..-++.++..||..+..+-..|+..|.-++.+|+.
T Consensus 89 ~~~~~~~~~~~~~~~----~~~~~~l~~ll~~LP~~n~~~L~~l~~~L~~V~~~s~~ 141 (186)
T cd04407 89 AQYNDFLRAVELPEK----QEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDV 141 (186)
T ss_pred HHHHHHHHHHHCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 444445544433221 23566788899999999999999999999999999874
No 31
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=30.47 E-value=89 Score=21.84 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH-------------------HhhhhhhhhhhhhhHHHHHHhhCCC-----CchHHHHHHHHHhhHhhhhc
Q psy10490 11 AEIWSVFIAIL-------------------RKSVRNLQACTDIGLIEHVLNRLPH-----ADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 11 AEIWS~FiAIL-------------------RKSiRNLQaCSrVGLIe~vL~RL~~-----ad~~IADLLvemLgVLAsYS 66 (121)
+++|..++++- +++..+...-.....|.+=+.|... -++-.-..+..+|-.++.|+
T Consensus 5 ~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~ 84 (214)
T PF00566_consen 5 GQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYN 84 (214)
T ss_dssp HHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHhcccc
Confidence 67899888883 2222233333345566666666555 44455566677777777665
Q ss_pred c
Q psy10490 67 D 67 (121)
Q Consensus 67 ~ 67 (121)
.
T Consensus 85 ~ 85 (214)
T PF00566_consen 85 P 85 (214)
T ss_dssp T
T ss_pred c
Confidence 4
No 32
>PF14222 MOR2-PAG1_N: Cell morphogenesis N-terminal
Probab=29.74 E-value=1.1e+02 Score=27.40 Aligned_cols=52 Identities=29% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhhhh-hhhhhhhhHHHHHHhhCCCCch------------HHHHHHHHHhhHhhhh
Q psy10490 14 WSVFIAILRKSVRN-LQACTDIGLIEHVLNRLPHADP------------VVAETHEGSYGVWIIF 65 (121)
Q Consensus 14 WS~FiAILRKSiRN-LQaCSrVGLIe~vL~RL~~ad~------------~IADLLvemLgVLAsY 65 (121)
..+++.|++.+-.+ +-.=....|-+-+-+.+..+|+ .++|+.-|+||+|+..
T Consensus 13 CrvLieil~q~~~~~l~~~l~~~le~i~F~~lk~~d~~~~~~~~s~~~~~~~~l~AellG~lS~~ 77 (552)
T PF14222_consen 13 CRVLIEILKQSPLHSLTEELGDKLEEIVFDQLKTADPVSEQPSTSPLRLANWDLFAELLGVLSEI 77 (552)
T ss_pred HHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHhccCccccccccchhHHHHHHHHHHHHHHHHhh
Confidence 45778888887743 3333334566677888888888 5679999999999875
No 33
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=29.66 E-value=20 Score=26.65 Aligned_cols=17 Identities=24% Similarity=0.427 Sum_probs=13.9
Q ss_pred hhHhhhhcccccchhcc
Q psy10490 59 YGVWIIFEDIREGRIQE 75 (121)
Q Consensus 59 LgVLAsYS~~~~~~~~~ 75 (121)
...+++|++||+||.+=
T Consensus 60 ~~a~~ty~Ei~~Gk~~W 76 (104)
T TIGR03745 60 YHALGTYHEIRTGKATW 76 (104)
T ss_pred HHHHHHHHHHHcchhhH
Confidence 35688999999999764
No 34
>PF10798 YmgB: Biofilm development protein YmgB/AriR; InterPro: IPR024753 YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid, which indicates that YmgB has an important function in acid-resistance []. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole) [].; GO: 0042710 biofilm formation, 0071229 cellular response to acid; PDB: 2OXL_B.
Probab=29.58 E-value=1.3e+02 Score=19.92 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHH-HHHHHHhhHhhhh
Q psy10490 17 FIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVA-ETHEGSYGVWIIF 65 (121)
Q Consensus 17 FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IA-DLLvemLgVLAsY 65 (121)
+-+|++.=.+.=+.=|.-.+|.+++.+|....+++- |.+-..|.++..+
T Consensus 7 L~~iv~ell~~g~~vsnKaII~~LI~~LE~e~Dv~~~dvyR~~LEiVv~~ 56 (61)
T PF10798_consen 7 LGAIVRELLASGGHVSNKAIILKLIHRLESESDVVQLDVYRNALEIVVGR 56 (61)
T ss_dssp HHHHHHHHHHTT---SHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHcc
Confidence 444444444444555788999999999976666654 7777777665544
No 35
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=29.57 E-value=1.5e+02 Score=22.51 Aligned_cols=52 Identities=8% Similarity=0.052 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+...-|+.+.+.. ..+.+..-+.+++..||..+..+-..|+..|.-++. |+
T Consensus 90 ~~~y~~~~~~~~~~----~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~-s~ 141 (193)
T cd04382 90 FALWKEFMEAAEIL----DEDNSRAALYQAISELPQPNRDTLAFLILHLQRVAQ-SP 141 (193)
T ss_pred HHHHHHHHHHHHcC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhc-cc
Confidence 34555565555443 345667778889999999999888888888887776 54
No 36
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=28.16 E-value=1.6e+02 Score=22.08 Aligned_cols=58 Identities=14% Similarity=0.094 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhh------hhhhh----hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRN------LQACT----DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRN------LQaCS----rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+++.-|+.+.+.+.+. -+.|+ ++.-++.++..||.++..+-..|+..|.-++.+|+.
T Consensus 89 ~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 156 (203)
T cd04378 89 FRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLLRQLPASNYNTLQHLIAHLYRVAEQFEE 156 (203)
T ss_pred HHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777788777653221 12233 245677899999999999999999999999988763
No 37
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=28.02 E-value=55 Score=19.64 Aligned_cols=61 Identities=13% Similarity=0.135 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHH---HHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 9 GQAEIWSVFIAI---LRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 9 ~QAEIWS~FiAI---LRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
.+||.|.++.|+ ....++++...|+.-.+-+.+..-......+..++-++..++..+.+.+
T Consensus 2 ~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 65 (87)
T PF13456_consen 2 LEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRSELRPLIQDIRSLLDRFWNVS 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---SCCHHHHHHHHHHHCCCSCEE
T ss_pred cHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccccccccchhhhhhhccccceE
Confidence 467888777765 4567888999999988888887765555577777777777777766543
No 38
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=27.62 E-value=1.4e+02 Score=17.58 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHH
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IAD 53 (121)
++-.-|+.||+.=-+ ...+...+++++-..+..-++++.+
T Consensus 2 ~~Y~~FL~il~~y~~--~~~~~~~v~~~v~~Ll~~hpdLl~~ 41 (47)
T PF02671_consen 2 EVYNEFLKILNDYKK--GRISRSEVIEEVSELLRGHPDLLEE 41 (47)
T ss_dssp HHHHHHHHHHHHHHC--TCSCHHHHHHHHHHHTTT-HHHHHH
T ss_pred hHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHccCHHHHHH
Confidence 345668888865444 6677788999999999998888776
No 39
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=26.99 E-value=70 Score=23.39 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=29.8
Q ss_pred hhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccccc
Q psy10490 34 IGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIRE 70 (121)
Q Consensus 34 VGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~~ 70 (121)
||+|-.+++.=+-|++.|| ++.++|++..+--+.-
T Consensus 13 vG~iy~ll~v~sPAPP~iA--l~GllGi~~Ge~~~p~ 47 (90)
T PF07235_consen 13 VGVIYSLLKVPSPAPPVIA--LVGLLGILLGEQAIPL 47 (90)
T ss_pred HHHHHHHhcCCCCCCcHhH--HHHHHHHhcccchhHH
Confidence 7888888888888999998 9999999998876643
No 40
>KOG4424|consensus
Probab=26.91 E-value=46 Score=31.26 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCchHHHHH--HHHHhhHhhhhcc
Q psy10490 36 LIEHVLNRLPHADPVVAET--HEGSYGVWIIFED 67 (121)
Q Consensus 36 LIe~vL~RL~~ad~~IADL--LvemLgVLAsYS~ 67 (121)
|++..|.+|+..|+.-.|+ -++++.-.|++|.
T Consensus 207 LLk~yl~~lp~~d~D~~d~~ksLe~I~~aA~HsN 240 (623)
T KOG4424|consen 207 LLQDYLLYLPPDDPDYKDLKKSLELISTAASHSN 240 (623)
T ss_pred HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 6777889999888777763 4677777777764
No 41
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=26.15 E-value=1.9e+02 Score=21.53 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=30.7
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 33 DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 33 rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
++.-++.+++.||..+..+-..|++.+..++++|+
T Consensus 107 ~i~~l~~li~~LP~~n~~~L~~l~~~L~~v~~~s~ 141 (185)
T cd04373 107 RLHALKELLKKFPPENFDVFKYVITHLNKVSQNSK 141 (185)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHccc
Confidence 44567778999999999999999999999999986
No 42
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.38 E-value=2.4e+02 Score=21.69 Aligned_cols=35 Identities=9% Similarity=0.023 Sum_probs=29.5
Q ss_pred hhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 34 IGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 34 VGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
...+.+++..||..+..+-..|+..|.-++++|+.
T Consensus 116 ~~~~~~li~~LP~~n~~~L~~Ll~~L~~V~~~s~~ 150 (207)
T cd04379 116 THLTLSIIDCLPLSAKATLLLLLDHLSLVLSNSER 150 (207)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 34577889999999998888899999988998874
No 43
>PF08520 DUF1748: Fungal protein of unknown function (DUF1748); InterPro: IPR013726 This is a family of fungal proteins of unknown function.
Probab=24.13 E-value=59 Score=22.22 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=41.2
Q ss_pred CCCccchhhhHHHHHHHHHHHHhhhh---hhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhh
Q psy10490 1 MGKLGHNCGQAEIWSVFIAILRKSVR---NLQACTDIGLIEHVLNRLPHADPVVAETHEGSYG 60 (121)
Q Consensus 1 ~~~~~h~~~QAEIWS~FiAILRKSiR---NLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLg 60 (121)
.|||-|..+-|-+=|+|.|=+|.|.- |++. .+..=|+..+.+-=..-+.+-|..+.+++
T Consensus 1 lg~l~H~~~D~vLiS~~LAGirR~TGl~~~~~~-~~n~~~r~~~~~YL~~GE~~~D~~va~~~ 62 (70)
T PF08520_consen 1 LGRLVHYGFDAVLISTFLAGIRRNTGLTPKLDK-IENKDIRNWIHKYLNVGEWVFDKSVAYAG 62 (70)
T ss_pred CCceeeeeeeHHHHHHHHHHHhhccCCccChhh-cCChhHHHHHHHHcchhHHHHHHHHHHhc
Confidence 48999999999999999999998752 2221 22223566666666666777777766654
No 44
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=23.96 E-value=1.8e+02 Score=17.79 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=16.6
Q ss_pred hhhhhhhHHHHHHhhCCCCchHHHHHHHHHhh
Q psy10490 29 QACTDIGLIEHVLNRLPHADPVVAETHEGSYG 60 (121)
Q Consensus 29 QaCSrVGLIe~vL~RL~~ad~~IADLLvemLg 60 (121)
+.+-+.|+++.++..|.+.+.-+.......+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444556666666666655544444433333
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=23.76 E-value=2.4e+02 Score=19.11 Aligned_cols=34 Identities=12% Similarity=0.021 Sum_probs=29.5
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhc
Q psy10490 33 DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 33 rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS 66 (121)
++--++.++..|+.....+-..|+..+.-++.++
T Consensus 91 ~~~~~~~~i~~Lp~~~~~~L~~l~~~l~~v~~~~ 124 (169)
T cd00159 91 RIEALKELLKSLPPENRDLLKYLLKLLHKISQNS 124 (169)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhc
Confidence 6677888999999999988888899988888887
No 46
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=23.44 E-value=2.4e+02 Score=19.72 Aligned_cols=36 Identities=8% Similarity=0.065 Sum_probs=30.1
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 33 DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 33 rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+...+++++..||.....+-..|+.++.-++.+++.
T Consensus 95 ~~~~~~~~~~~Lp~~~~~~L~~l~~~l~~i~~~~~~ 130 (174)
T smart00324 95 RLRALRELISLLPPANRATLRYLLAHLNRVAEHSEE 130 (174)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 456788999999999988888888888888887753
No 47
>smart00756 VKc Family of likely enzymes that includes the catalytic subunit of vitamin K epoxide reductase. Bacterial homologues are fused to members of the thioredoxin family of oxidoreductases.
Probab=23.33 E-value=27 Score=25.28 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=13.5
Q ss_pred cceecchhhhhhcCCCCCC
Q psy10490 103 RWVFSSEQERMSNFGVPNP 121 (121)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ 121 (121)
.=|++|+|-+. ||+|||
T Consensus 48 ~~Vl~S~~a~~--~GiP~s 64 (142)
T smart00756 48 GKVLSSPYASI--FGIPLS 64 (142)
T ss_pred HHHhcChhHHH--cCCchH
Confidence 45788888876 899986
No 48
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=23.20 E-value=1e+02 Score=22.92 Aligned_cols=35 Identities=6% Similarity=0.035 Sum_probs=30.7
Q ss_pred hhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 34 IGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 34 VGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
..-+++++..||..+..+-..|+..|..+++||+.
T Consensus 113 i~~l~~~i~~LP~~n~~~L~~l~~~L~~v~~~~~~ 147 (196)
T cd04395 113 LKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEV 147 (196)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34577889999999999999999999999999885
No 49
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=22.92 E-value=77 Score=23.68 Aligned_cols=18 Identities=50% Similarity=0.719 Sum_probs=14.8
Q ss_pred CCCceeeeccceeEEeec
Q psy10490 86 GQDNMLYCQGDIALVTNR 103 (121)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ 103 (121)
..+-.||.||||-+|-|.
T Consensus 40 sk~v~l~rQG~I~~vln~ 57 (139)
T PF14696_consen 40 SKDVTLYRQGDINFVLNS 57 (139)
T ss_dssp CCSEEEEEETTEEEEEEE
T ss_pred CcceEEEEeCCEEEEEeC
Confidence 346689999999998875
No 50
>PLN00211 predicted protein; Provisional
Probab=22.92 E-value=51 Score=22.75 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHHHHHhh
Q psy10490 8 CGQAEIWSVFIAILRKS 24 (121)
Q Consensus 8 ~~QAEIWS~FiAILRKS 24 (121)
++-|||||+..-.-.+|
T Consensus 34 sfLAeIwSVyr~LSqES 50 (61)
T PLN00211 34 SFLAEIWSVYRPLSHES 50 (61)
T ss_pred HHHHHHHHHhchhhhhh
Confidence 46699999976554444
No 51
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=22.73 E-value=2.6e+02 Score=20.61 Aligned_cols=55 Identities=7% Similarity=-0.072 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 11 AEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 11 AEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.+.+.-|+.+.+++.-+ ..+.--++++++.||.....+-..++.++.-.++||+.
T Consensus 93 ~~~~~~l~~~~~~~~~~---~~~~~~l~~li~~Lp~~n~~~L~~l~~~l~~V~~~s~~ 147 (189)
T cd04393 93 ASLQIRLMQLYQDYNGE---DEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHE 147 (189)
T ss_pred HHHHHHHHHHHHHccCh---HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcccc
Confidence 45555555544433111 11222467889999999999999999999999999875
No 52
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.55 E-value=34 Score=24.32 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=13.9
Q ss_pred HhhHhhhhcccccchhcc
Q psy10490 58 SYGVWIIFEDIREGRIQE 75 (121)
Q Consensus 58 mLgVLAsYS~~~~~~~~~ 75 (121)
.-..+++|+++|+||-+=
T Consensus 43 a~~~i~~y~eir~gK~~W 60 (87)
T PF11190_consen 43 AKAAISTYNEIRDGKKTW 60 (87)
T ss_pred HHHHHHHHHHHHcCcccH
Confidence 345688999999998653
No 53
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=21.39 E-value=3.2e+02 Score=20.17 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=42.6
Q ss_pred CccchhhhHHHHHHHHHHHHhhhhhhhhhhhh-hHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 3 KLGHNCGQAEIWSVFIAILRKSVRNLQACTDI-GLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 3 ~~~h~~~QAEIWS~FiAILRKSiRNLQaCSrV-GLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
+++...+.+++-+++.--.|++.=||+.|+.. -+|+.+|+ ++.+..+.-.+--+..++.+|.+
T Consensus 39 ~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~lLP~i~~LL~--Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 39 RMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDLLPLIEELLQ--SKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred hcCCchHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888888887788999999999875 34555555 55666666555555555555544
No 54
>PF07309 FlaF: Flagellar protein FlaF; InterPro: IPR010845 This family consists of several bacterial FlaF flagellar proteins. FlaF and FlaG are trans-acting, regulatory factors that modulate flagellin synthesis during flagellum biogenesis [].
Probab=21.31 E-value=58 Score=23.40 Aligned_cols=42 Identities=24% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHH
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAE 53 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IAD 53 (121)
.+|++|.+.|-..-.-|-.=-|.+||.--+--++.+..+.++
T Consensus 53 rLW~~~~~dl~~~~n~LP~~LRa~LisL~~fv~~~t~~~~~~ 94 (113)
T PF07309_consen 53 RLWTIFAADLASPDNPLPDELRANLISLGLFVLRETSKVLRG 94 (113)
T ss_pred HHHHHHHHHHcCccCCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 689999999999999999999999998776666666665553
Done!