Query psy10490
Match_columns 121
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 29240
Date Fri Aug 16 19:30:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10490.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10490hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 76.1 7.6 0.00026 25.6 5.6 63 8-70 17-80 (252)
2 4db6_A Armadillo repeat protei 74.2 10 0.00036 24.8 5.9 57 9-65 154-210 (210)
3 4db6_A Armadillo repeat protei 65.6 25 0.00086 22.9 6.6 60 8-67 27-86 (210)
4 4db8_A Armadillo-repeat protei 60.7 26 0.00089 23.4 5.8 51 16-66 35-85 (252)
5 4hxt_A De novo protein OR329; 58.7 35 0.0012 22.3 6.1 61 9-69 186-246 (252)
6 2jdq_A Importin alpha-1 subuni 52.7 44 0.0015 24.0 6.3 58 9-66 81-138 (450)
7 4db8_A Armadillo-repeat protei 52.1 28 0.00094 23.3 4.8 60 10-69 71-130 (252)
8 1xm9_A Plakophilin 1; armadill 47.2 25 0.00086 27.2 4.5 62 9-70 393-455 (457)
9 3s0x_A Peptidase A24B, FLAK do 43.9 12 0.00042 29.0 2.3 31 46-76 4-34 (237)
10 3tpo_A Importin subunit alpha- 43.0 66 0.0022 25.1 6.3 60 8-67 135-194 (529)
11 3kuq_A RHO GTPase-activating p 40.4 40 0.0014 24.5 4.5 53 12-68 110-162 (228)
12 1jo6_A KCNMB2, potassium large 38.1 9.5 0.00032 23.9 0.7 24 65-88 22-45 (45)
13 2osa_A N-chimaerin; RHO-GAP, G 35.2 37 0.0013 24.0 3.5 37 32-68 117-153 (202)
14 3byi_A RHO GTPase activating p 33.2 53 0.0018 23.3 4.1 53 12-68 111-163 (214)
15 1f7c_A Rhogap protein; GTPase 32.8 49 0.0017 24.0 3.9 53 12-68 116-168 (231)
16 2oxl_A Hypothetical protein YM 31.4 53 0.0018 21.1 3.5 56 7-65 3-59 (64)
17 3l6x_A Catenin delta-1; cateni 31.0 1.2E+02 0.0041 25.7 6.5 74 12-85 422-497 (584)
18 2ehg_A Ribonuclease HI; RNAse 29.6 85 0.0029 20.5 4.4 59 7-65 47-109 (149)
19 3msx_B RHO GTPase-activating p 28.9 43 0.0015 23.5 2.9 37 32-68 115-151 (201)
20 1tx4_A P50-rhogap; complex (GT 28.8 32 0.0011 24.2 2.3 39 30-68 113-151 (198)
21 3iug_A RHO/CDC42/RAC GTPase-ac 28.6 47 0.0016 23.9 3.2 37 32-68 129-165 (229)
22 4b8j_A Importin subunit alpha- 27.0 2E+02 0.007 21.7 6.6 52 16-67 141-192 (528)
23 1g1e_B SIN3A; four-helix bundl 26.3 1.2E+02 0.0042 19.8 4.7 45 10-54 27-82 (89)
24 1ow3_A RHO-GTPase-activating p 25.8 38 0.0013 24.9 2.3 39 30-68 149-187 (242)
25 1wa5_B Importin alpha subunit; 24.4 1.4E+02 0.0047 22.8 5.2 42 26-67 290-331 (530)
26 3ul1_B Importin subunit alpha- 22.1 2.8E+02 0.0096 21.5 7.2 60 8-67 116-175 (510)
27 3fk2_A Glucocorticoid receptor 21.9 84 0.0029 23.1 3.5 36 33-68 160-195 (246)
28 3u3g_D Ribonuclease H, RNAse H 21.9 1.3E+02 0.0045 18.7 4.0 59 7-65 44-111 (140)
29 3qis_A Inositol polyphosphate 21.6 54 0.0018 25.8 2.5 39 30-68 279-317 (366)
30 1e91_A Paired amphipathic heli 21.6 1.4E+02 0.0049 19.3 4.3 44 10-54 24-76 (85)
31 2ee4_A RHO GTPase activating p 21.4 1E+02 0.0034 21.8 3.7 37 32-68 118-154 (209)
32 4b8j_A Importin subunit alpha- 20.3 2.7E+02 0.0091 21.0 6.1 57 10-66 388-445 (528)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=76.06 E-value=7.6 Score=25.58 Aligned_cols=63 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhh-ccccc
Q psy10490 8 CGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIF-EDIRE 70 (121)
Q Consensus 8 ~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsY-S~~~~ 70 (121)
..|.+.-..+..+.+++-.|.+.-.+.|.|+.++..|.+.++.+-......|+-|+.. .+.++
T Consensus 17 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 17 ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 3444555556667777767888888899999999999999988888888888888876 44444
No 2
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=74.19 E-value=10 Score=24.75 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhh
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIF 65 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsY 65 (121)
+|...-..+..+...+-.|-+...+.|.|+.+++.+.+.++-+...-...|+-|+++
T Consensus 154 v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 154 ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence 444444455566666666777777889999999999999998888888888777754
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=65.61 E-value=25 Score=22.89 Aligned_cols=60 Identities=10% Similarity=0.027 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 8 CGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 8 ~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+|.+.-..+..+.+.+..+.+.-.+.|.|+.+++.|.+.++-+-..-+..|+-|+..++
T Consensus 27 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~ 86 (210)
T 4db6_A 27 QELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 86 (210)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc
Confidence 344444445556666777777888888999999999999998888777788888876543
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=60.66 E-value=26 Score=23.42 Aligned_cols=51 Identities=16% Similarity=0.137 Sum_probs=40.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhc
Q psy10490 16 VFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 16 ~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS 66 (121)
.+..++.++..|.+...+.|.|+.++..|.+.++-+-..-+..|+-|+..+
T Consensus 35 ~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (252)
T 4db8_A 35 KFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 344555667788888899999999999999998877777777888887743
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=58.68 E-value=35 Score=22.31 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
+|...-..+..+...+-.+.+.-.+.|.++.+++.+.+.++-+...-...|+-|+.+..-.
T Consensus 186 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 186 VQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 3444444455555556666667778899999999999999988888888888888776543
No 6
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=52.74 E-value=44 Score=24.04 Aligned_cols=58 Identities=16% Similarity=-0.043 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhc
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS 66 (121)
+|.+.=..+..|.+.+..+.+...+.|+|+.++..|.+.++.+-..-+..|+-|+..+
T Consensus 81 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 81 LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 3333334444444444455555567899999999999999888888888888888765
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=52.15 E-value=28 Score=23.29 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccc
Q psy10490 10 QAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIR 69 (121)
Q Consensus 10 QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~ 69 (121)
|.+.-..+..+...+..|-+.-.+.|.|+.++..|.+.++-+-..-...|+-|+..++.+
T Consensus 71 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 71 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchH
Confidence 333333444444555666677777899999999999988888777777788887766655
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=47.19 E-value=25 Score=27.22 Aligned_cols=62 Identities=6% Similarity=0.028 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCC-chHHHHHHHHHhhHhhhhccccc
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHA-DPVVAETHEGSYGVWIIFEDIRE 70 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~a-d~~IADLLvemLgVLAsYS~~~~ 70 (121)
.+..+|..+--|++++..+.+.=.+.|-|+++.+.+.+. ++-|-..-..+|.-+.+|+++|.
T Consensus 393 v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~l~~ 455 (457)
T 1xm9_A 393 ILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchhhhc
Confidence 556777777788888888888888999999999999888 78888877888888889998874
No 9
>3s0x_A Peptidase A24B, FLAK domain protein; preflagellin peptidase, GXGD protease, aspartyl protease, intramembrane proteolysis; 3.60A {Methanococcus maripaludis}
Probab=43.92 E-value=12 Score=28.97 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=21.4
Q ss_pred CCchHHHHHHHHHhhHhhhhcccccchhccc
Q psy10490 46 HADPVVAETHEGSYGVWIIFEDIREGRIQEG 76 (121)
Q Consensus 46 ~ad~~IADLLvemLgVLAsYS~~~~~~~~~~ 76 (121)
.+..||+-++.=...+.|+|+|+|+.||..-
T Consensus 4 ~~~~mi~~i~~l~~li~Aa~~Dlk~R~IpN~ 34 (237)
T 3s0x_A 4 GSGSMIEYIIGALGLIIASVQDFRSREIEDY 34 (237)
T ss_dssp -CTTHHHHHHHHHHHHHHHHCC----CTHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhhcEeCch
Confidence 4567888888888889999999999999754
No 10
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=43.02 E-value=66 Score=25.08 Aligned_cols=60 Identities=17% Similarity=0.027 Sum_probs=48.2
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 8 CGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 8 ~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+|.+.=..+.-|...+-.|-++..+.|.|+.++..|.+.++.+...-+..|+-|+..+.
T Consensus 135 ~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 135 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCH
Confidence 355555456666766677777888899999999999999999999888888998887653
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=40.41 E-value=40 Score=24.47 Aligned_cols=53 Identities=13% Similarity=0.028 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+.+..|+++.+... .-.++..++.++..||..+..+-..|+..|.-++.+++.
T Consensus 110 ~l~~~~~~~~~~~~----~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 162 (228)
T 3kuq_A 110 KLSETFLQIYQYVP----KDQRLQAIKAAIMLLPDENREVLQTLLYFLSDVTAAVKE 162 (228)
T ss_dssp SHHHHHHHHHHHSC----GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445555544221 124567888999999999999999999999999998874
No 12
>1jo6_A KCNMB2, potassium large conductance calcium-activated channel, subfamily M, beta member 2..., large; helix, ION channel, cytoplasmic PART of; NMR {Synthetic} SCOP: j.89.1.1
Probab=38.11 E-value=9.5 Score=23.93 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=18.9
Q ss_pred hcccccchhcccccccccccCCCC
Q psy10490 65 FEDIREGRIQEGVGAETHLSAGQD 88 (121)
Q Consensus 65 YS~~~~~~~~~~~~~~~~~~~~~~ 88 (121)
|++|++|..-+----.|-|+||-|
T Consensus 22 y~~~~dgd~~dk~kk~~sl~AGED 45 (45)
T 1jo6_A 22 YQKIRDHDLLDKRKTVTALKAGED 45 (45)
T ss_dssp HHHHHHHHTTTSSSCCCCSCCSCC
T ss_pred ccccccCCccccccccCccccCCC
Confidence 678888887777777788889876
No 13
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=35.19 E-value=37 Score=23.95 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=31.6
Q ss_pred hhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 32 TDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 32 SrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++..++.++..||.....+-..|+..|.-++.+|+.
T Consensus 117 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~ 153 (202)
T 2osa_A 117 EQLETLHEALKLLPPAHCETLRYLMAHLKRVTLHEKE 153 (202)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHhccccC
Confidence 4567788999999999998888999999999988863
No 14
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=33.20 E-value=53 Score=23.33 Aligned_cols=53 Identities=13% Similarity=0.246 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+.+..|+++.+.. ..-.++.-++.++..||.....+-..|+..|.-++.+|+.
T Consensus 111 ~l~~~~~~~~~~~----~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~s~~ 163 (214)
T 3byi_A 111 SFFEQFVEAIKKQ----DNNTRIEAVKSLVQKLPPPNRDTMKVLFGHLTKIVAKASK 163 (214)
T ss_dssp HHHHHHHHHHTSS----SHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcccC
Confidence 3444455544422 1234566788999999999998888999999999988864
No 15
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=32.81 E-value=49 Score=24.02 Aligned_cols=53 Identities=11% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
+....|+.+.+.. ....|+.-++.++..||.....+-..|+..|.-++.+|+.
T Consensus 116 ~ly~~~~~~~~~~----~~~~r~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 168 (231)
T 1f7c_A 116 QFQRSFIKAAKLE----NQESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQ 168 (231)
T ss_dssp HHHHHHHHHHTCS----SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHhcC----CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444455444322 2345677889999999999998889999999999998864
No 16
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=31.37 E-value=53 Score=21.07 Aligned_cols=56 Identities=4% Similarity=0.119 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHH-HHHHHHhhHhhhh
Q psy10490 7 NCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVA-ETHEGSYGVWIIF 65 (121)
Q Consensus 7 ~~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IA-DLLvemLgVLAsY 65 (121)
+.-|.|+.. +|++.=.+.=+-=|+--+|.+++.||..+.+.+- |-+=.+|+++-.+
T Consensus 3 ~~~E~e~Lg---~iv~eil~~g~~vsnKaIi~~LI~rLE~~~d~~~~d~yR~lLe~v~~~ 59 (64)
T 2oxl_A 3 LEEESAVLG---QAVTNLMLSGDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRY 59 (64)
T ss_dssp THHHHHHHH---HHHHHHHHTTCCCSHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHH---HHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcc
Confidence 344555433 4444444444445788999999999998877665 6777777776554
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=30.97 E-value=1.2e+02 Score=25.75 Aligned_cols=74 Identities=8% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCC--chHHHHHHHHHhhHhhhhcccccchhcccccccccccC
Q psy10490 12 EIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHA--DPVVAETHEGSYGVWIIFEDIREGRIQEGVGAETHLSA 85 (121)
Q Consensus 12 EIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~a--d~~IADLLvemLgVLAsYS~~~~~~~~~~~~~~~~~~~ 85 (121)
.+-.++--|+-++..|-++=.+.|.|+++.+.|.+. .+-+...--.+|.-|++|+++|.---++|.....-+++
T Consensus 422 ~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~G~~~~~f~~~ 497 (584)
T 3l6x_A 422 SILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVN 497 (584)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTTTCCGGGGCCC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHcCCCHHHhccc
Confidence 333344445567888999999999999999999875 66777777888999999999998877888776655544
No 18
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=29.63 E-value=85 Score=20.52 Aligned_cols=59 Identities=12% Similarity=-0.015 Sum_probs=42.8
Q ss_pred hhhhHHHHHHHHHHH---HhhhhhhhhhhhhhHHHHHHhhC-CCCchHHHHHHHHHhhHhhhh
Q psy10490 7 NCGQAEIWSVFIAIL---RKSVRNLQACTDIGLIEHVLNRL-PHADPVVAETHEGSYGVWIIF 65 (121)
Q Consensus 7 ~~~QAEIWS~FiAIL---RKSiRNLQaCSrVGLIe~vL~RL-~~ad~~IADLLvemLgVLAsY 65 (121)
-+.+||+..+..|+- +..++.+..+|+.-++-+.+..- ...++...+++-++...+..+
T Consensus 47 tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~ 109 (149)
T 2ehg_A 47 TNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL 109 (149)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC
Confidence 366899999988862 34467889999988888777664 444456778877777777665
No 19
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=28.89 E-value=43 Score=23.45 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=31.9
Q ss_pred hhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 32 TDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 32 SrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++..+++++..||.....+-..|+..|.-++.||+.
T Consensus 115 ~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~ 151 (201)
T 3msx_B 115 EKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSSS 151 (201)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566788999999999999889999999999988864
No 20
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=28.80 E-value=32 Score=24.22 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=33.2
Q ss_pred hhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 30 ACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 30 aCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
...++.-+++++..||.....+-..|+..|.-++.+|+.
T Consensus 113 ~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~ 151 (198)
T 1tx4_A 113 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQ 151 (198)
T ss_dssp GGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCC
Confidence 345677889999999999998888999999999988764
No 21
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=28.57 E-value=47 Score=23.93 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.9
Q ss_pred hhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 32 TDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 32 SrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++..++.++..||.....+-..|+..|.-++.+++.
T Consensus 129 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 165 (229)
T 3iug_A 129 ERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSI 165 (229)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCc
Confidence 4566788899999999999989999999999998874
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=26.98 E-value=2e+02 Score=21.67 Aligned_cols=52 Identities=15% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 16 VFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 16 ~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+..|...+-.|-+...+.|.|+.++..|.+.++.+-...+..|+-|+..++
T Consensus 141 ~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 192 (528)
T 4b8j_A 141 ALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP 192 (528)
T ss_dssp HHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh
Confidence 3444555555566666677999999999999998888888888888887644
No 23
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=26.29 E-value=1.2e+02 Score=19.85 Aligned_cols=45 Identities=24% Similarity=0.404 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHhh---hhhhh--------hhhhhhHHHHHHhhCCCCchHHHHH
Q psy10490 10 QAEIWSVFIAILRKS---VRNLQ--------ACTDIGLIEHVLNRLPHADPVVAET 54 (121)
Q Consensus 10 QAEIWS~FiAILRKS---iRNLQ--------aCSrVGLIe~vL~RL~~ad~~IADL 54 (121)
|-++..-|+-||+.- -++.+ .+++.+.+++|-..+...++++.+.
T Consensus 27 ~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F 82 (89)
T 1g1e_B 27 QPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF 82 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHH
Confidence 678889999999743 34443 3567899999999999999888763
No 24
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=25.75 E-value=38 Score=24.90 Aligned_cols=39 Identities=15% Similarity=0.047 Sum_probs=33.5
Q ss_pred hhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 30 ACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 30 aCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
...++.-+.+++..||.....+-..|+..|.-++.+|+.
T Consensus 149 ~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 187 (242)
T 1ow3_A 149 ESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQ 187 (242)
T ss_dssp GGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCc
Confidence 345677889999999999998889999999999998864
No 25
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=24.40 E-value=1.4e+02 Score=22.79 Aligned_cols=42 Identities=19% Similarity=0.283 Sum_probs=31.9
Q ss_pred hhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 26 RNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 26 RNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+.+...+.|+++.++..|.+.++-+-...+..|+-|+..++
T Consensus 290 ~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 290 EAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 345555566999999999999888777777777888776543
No 26
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=22.10 E-value=2.8e+02 Score=21.52 Aligned_cols=60 Identities=17% Similarity=0.015 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 8 CGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 8 ~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
.+|.|-=..+.-|..-+-.|-++-.+.|.|+.++..|.+.++-+-..-+..|+-|+..++
T Consensus 116 ~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~ 175 (510)
T 3ul1_B 116 PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 175 (510)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCH
Confidence 355444344555555566677777888999999999999999998888888888887654
No 27
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=21.94 E-value=84 Score=23.05 Aligned_cols=36 Identities=11% Similarity=0.139 Sum_probs=31.7
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 33 DIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 33 rVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
++..+..++..||.....+-..|+..|.-++.+++.
T Consensus 160 ~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 195 (246)
T 3fk2_A 160 KLHALKEVLKKFPKENHEVFKYVISHLNKVSHNNKV 195 (246)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCc
Confidence 566788999999999999999999999999998875
No 28
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=21.92 E-value=1.3e+02 Score=18.70 Aligned_cols=59 Identities=14% Similarity=0.067 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHH---Hhhhh----hhhhhhhhhHHHHHHhhCC-CCchHHHHHHHHHhhH-hhhh
Q psy10490 7 NCGQAEIWSVFIAIL---RKSVR----NLQACTDIGLIEHVLNRLP-HADPVVAETHEGSYGV-WIIF 65 (121)
Q Consensus 7 ~~~QAEIWS~FiAIL---RKSiR----NLQaCSrVGLIe~vL~RL~-~ad~~IADLLvemLgV-LAsY 65 (121)
-+.+||+..+..|+- +...+ ++..+|+.-++-+.+..-- ..++.+..++-++... +.++
T Consensus 44 tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~ 111 (140)
T 3u3g_D 44 TNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERV 111 (140)
T ss_dssp CHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCC
Confidence 356799999999874 34556 7888999888877776532 2344444555555554 4444
No 29
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=21.57 E-value=54 Score=25.77 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=32.8
Q ss_pred hhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 30 ACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 30 aCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
++.....+++++..||.....+-..|+..|.-++.||+.
T Consensus 279 ~~~~~~~~~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~ 317 (366)
T 3qis_A 279 SAYDPRICRQVISQLPRCHRNVFRYLMAFLRELLKFSEY 317 (366)
T ss_dssp HTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 344556788999999999999989999999999998875
No 30
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=21.56 E-value=1.4e+02 Score=19.33 Aligned_cols=44 Identities=20% Similarity=0.353 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHHHhhhhhhh---------hhhhhhHHHHHHhhCCCCchHHHHH
Q psy10490 10 QAEIWSVFIAILRKSVRNLQ---------ACTDIGLIEHVLNRLPHADPVVAET 54 (121)
Q Consensus 10 QAEIWS~FiAILRKSiRNLQ---------aCSrVGLIe~vL~RL~~ad~~IADL 54 (121)
|-++..-|+.||+. .++=+ .||....+++|-..+..-+++|.+.
T Consensus 24 ~p~~Y~~FL~il~~-yk~~~~d~~~~~~~~~s~~eV~~~V~~Lf~~hpDLl~~F 76 (85)
T 1e91_A 24 HPEIYRSFLEILHT-YQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEF 76 (85)
T ss_dssp CHHHHHHHHHHHHH-HHHTTCSSSCCCSSCCCHHHHHHHHHHHTSSCHHHHHHH
T ss_pred ChHHHHHHHHHHHH-HHHccccccccccccCcHHHHHHHHHHHHccCHHHHHHH
Confidence 56888999999973 22222 3788899999999999999888763
No 31
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=21.41 E-value=1e+02 Score=21.80 Aligned_cols=37 Identities=5% Similarity=-0.027 Sum_probs=31.3
Q ss_pred hhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 32 TDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 32 SrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++.-+++++..||.....+-..|+..|.-++.+++.
T Consensus 118 ~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~~~~ 154 (209)
T 2ee4_A 118 ERLHALKEIVKKFHPVNYDVFRYVITHLNRVSQQHKI 154 (209)
T ss_dssp HHHHHHHHHTTTSCTTHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566788899999999998888899999999988764
No 32
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=20.30 E-value=2.7e+02 Score=21.03 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHHHh-hhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhc
Q psy10490 10 QAEIWSVFIAILRK-SVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 10 QAEIWS~FiAILRK-SiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS 66 (121)
|.+.-..+..+... +..+.+.-.+.|.|+.+++.|.+.++-+-...++.|+-|..+.
T Consensus 388 ~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 388 KKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33333334444444 3444555556799999999999999887777777777776654
Done!