Query psy10490
Match_columns 121
No_of_seqs 31 out of 33
Neff 1.9
Searched_HMMs 13730
Date Fri Aug 16 19:31:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10490.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10490hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xm9a1 a.118.1.24 (A:244-700) 79.2 2.1 0.00015 27.4 5.2 55 16-70 400-455 (457)
2 d1q1sc_ a.118.1.1 (C:) Importi 55.8 24 0.0017 23.2 7.1 59 7-65 71-129 (434)
3 d1xqra1 a.118.1.21 (A:87-350) 44.8 35 0.0026 22.0 6.3 59 9-67 160-218 (264)
4 d1rjxb_ b.47.1.2 (B:) Plasmin( 44.2 4.8 0.00035 25.4 1.7 40 69-110 14-59 (247)
5 d1q1sc_ a.118.1.1 (C:) Importi 37.0 39 0.0028 22.1 5.5 54 13-66 335-388 (434)
6 d1jdha_ a.118.1.1 (A:) beta-Ca 32.4 34 0.0025 23.6 4.8 53 23-75 448-500 (529)
7 d1f7ca_ a.116.1.1 (A:) Graf {C 32.1 27 0.002 22.4 4.0 38 31-68 101-138 (191)
8 d1xqra1 a.118.1.21 (A:87-350) 30.1 59 0.0043 20.9 5.5 60 9-68 118-177 (264)
9 g1rtf.1 b.47.1.2 (A:,B:) Two-c 24.5 15 0.0011 23.2 1.5 40 68-109 4-54 (260)
10 d1w36c1 c.37.1.19 (C:1-347) Ex 23.9 14 0.001 27.4 1.5 61 6-68 161-236 (347)
11 d1wr6a1 a.7.8.1 (A:211-300) AD 21.2 35 0.0026 20.8 2.8 36 37-72 52-90 (90)
12 d1bioa_ b.47.1.2 (A:) Factor D 20.1 25 0.0018 21.3 1.9 19 90-110 23-41 (228)
13 d2hlca_ b.47.1.2 (A:) HL colla 20.0 28 0.002 21.7 2.1 20 88-109 25-44 (230)
No 1
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.19 E-value=2.1 Score=27.43 Aligned_cols=55 Identities=7% Similarity=0.083 Sum_probs=44.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCC-chHHHHHHHHHhhHhhhhccccc
Q psy10490 16 VFIAILRKSVRNLQACTDIGLIEHVLNRLPHA-DPVVAETHEGSYGVWIIFEDIRE 70 (121)
Q Consensus 16 ~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~a-d~~IADLLvemLgVLAsYS~~~~ 70 (121)
++-.++-++..|-+.-.+.|-|+++++.+.+. ++.+...-..+|+-|++|++.|+
T Consensus 400 ~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~~~ 455 (457)
T d1xm9a1 400 TVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKELQG 455 (457)
T ss_dssp HHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTCSS
T ss_pred HHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhhHh
Confidence 33444556777888889999999999988664 56788888999999999999986
No 2
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.77 E-value=24 Score=23.22 Aligned_cols=59 Identities=17% Similarity=0.022 Sum_probs=47.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhh
Q psy10490 7 NCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIF 65 (121)
Q Consensus 7 ~~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsY 65 (121)
-.+|.+.=..+..+...+-.+-+...+.|.|+.++..|.+-++.+-...+..|+-++.-
T Consensus 71 ~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~ 129 (434)
T d1q1sc_ 71 SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 129 (434)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhcc
Confidence 34677666677777777778888899999999999999999888887777777776643
No 3
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.78 E-value=35 Score=22.04 Aligned_cols=59 Identities=7% Similarity=0.030 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcc
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFED 67 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~ 67 (121)
+|...=+.+..++..+-.+-++-.+.|.++.++..|.+.++-+-...+..|+-|+..+.
T Consensus 160 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~ 218 (264)
T d1xqra1 160 LKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 218 (264)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCH
Confidence 34333445555677777788888888999999999999998888888888888887653
No 4
>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.24 E-value=4.8 Score=25.45 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=27.2
Q ss_pred ccchhccccccccc-----ccC-CCCceeeeccceeEEeecceecchh
Q psy10490 69 REGRIQEGVGAETH-----LSA-GQDNMLYCQGDIALVTNRWVFSSEQ 110 (121)
Q Consensus 69 ~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (121)
.+|||-.|.-|+.. .+- -.++...|.| +|++.|||.++.+
T Consensus 14 ~~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~C~G--tLIs~~~VLTaAh 59 (247)
T d1rjxb_ 14 CPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGG--TLISPEWVLTAAH 59 (247)
T ss_dssp CCTTSTTCEECCTTSSTTEEEEEETTCCEEEEE--EEEETTEEEEEGG
T ss_pred CCCeEECCEECCCCCCCcEEEEEECCCCEEEEE--EEEeCCEEEeeeE
Confidence 36899888777632 110 2345568999 6899999988643
No 5
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.97 E-value=39 Score=22.14 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhc
Q psy10490 13 IWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66 (121)
Q Consensus 13 IWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS 66 (121)
+|.+.......+.+++..-.+.|.|+.+++.|...|+-+-...++.|.-|-.+.
T Consensus 335 ~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~ 388 (434)
T d1q1sc_ 335 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAA 388 (434)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 455555444555677777788899999999999888866666666665555443
No 6
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.37 E-value=34 Score=23.64 Aligned_cols=53 Identities=13% Similarity=0.036 Sum_probs=41.0
Q ss_pred hhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhcccccchhcc
Q psy10490 23 KSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDIREGRIQE 75 (121)
Q Consensus 23 KSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~~~~~~~~ 75 (121)
+...|.+...+.|.|+.+.+.|.+.++.+-......|.-|+.++|.++--.++
T Consensus 448 ~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~ 500 (529)
T d1jdha_ 448 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAE 500 (529)
T ss_dssp TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred cCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHC
Confidence 34455666778889999999999999988888888888898888776543333
No 7
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=32.06 E-value=27 Score=22.40 Aligned_cols=38 Identities=11% Similarity=0.066 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 31 CTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 31 CSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
.++.--+++++.+||.....+-..|+..+.-++.+++.
T Consensus 101 ~~~~~~~~~ll~~LP~~~~~~L~~l~~~l~~v~~~~~~ 138 (191)
T d1f7ca_ 101 ESRVSEIHSLVHRLPEKNRQMLHLLMNHLAKVADNHKQ 138 (191)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45666788999999999999999999999999988774
No 8
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.12 E-value=59 Score=20.87 Aligned_cols=60 Identities=3% Similarity=-0.052 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCchHHHHHHHHHhhHhhhhccc
Q psy10490 9 GQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADPVVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 9 ~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~~IADLLvemLgVLAsYS~~ 68 (121)
++...=.....+.+.+.-|.+...+.|.|+.++..|.+.++-+-.....+|+-|++.++-
T Consensus 118 v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~ 177 (264)
T d1xqra1 118 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPE 177 (264)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHH
Confidence 444444445566777777888888999999999999999988877777777777766543
No 9
>g1rtf.1 b.47.1.2 (A:,B:) Two-chain tissue plasminogen activator (TC)-T-PA {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.51 E-value=15 Score=23.23 Aligned_cols=40 Identities=23% Similarity=0.520 Sum_probs=23.8
Q ss_pred cccchhcccccccccccC-----------CCCceeeeccceeEEeecceecch
Q psy10490 68 IREGRIQEGVGAETHLSA-----------GQDNMLYCQGDIALVTNRWVFSSE 109 (121)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 109 (121)
+|..||--|..|+..--. .-..-..|.| +|+++|||..+.
T Consensus 4 ~~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~~~~~~~C~G--tlIs~~~VLTaA 54 (260)
T g1rtf.1 4 LRQYSIKGGLFADIASHPWQAAIFAKHRRSPGERFLCGG--ILISSCWILSAA 54 (260)
T ss_dssp CCCC-CBSSEECCGGGSTTEEEEEEEC----CEEEEEEE--EECSSSEEEECG
T ss_pred CCCCeeECCEECCCCCCCCEEEEEEcccCCCCCceEEEE--EEEeCCEEEEee
Confidence 456677777666543111 1112356998 789999998754
No 10
>d1w36c1 c.37.1.19 (C:1-347) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.89 E-value=14 Score=27.39 Aligned_cols=61 Identities=11% Similarity=0.137 Sum_probs=43.8
Q ss_pred chhhhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhCCCCch---------------HHHHHHHHHhhHhhhhccc
Q psy10490 6 HNCGQAEIWSVFIAILRKSVRNLQACTDIGLIEHVLNRLPHADP---------------VVAETHEGSYGVWIIFEDI 68 (121)
Q Consensus 6 h~~~QAEIWS~FiAILRKSiRNLQaCSrVGLIe~vL~RL~~ad~---------------~IADLLvemLgVLAsYS~~ 68 (121)
+-.-|+++|-.+.+-+.+ .+-....+..|.++.+++|.+.+. -++-..+++|..|++|.|+
T Consensus 161 ~~~WQ~~LWr~L~~~~~~--~~~~~~h~a~l~~~~~~~l~~~~~~~~~lP~Ri~vFGis~Lpp~~l~~L~aLS~~~dV 236 (347)
T d1w36c1 161 AQAWQAPLWKALVEYTHQ--LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQALQALGKHIEI 236 (347)
T ss_dssp THHHHHHHHHHHHHHHHH--TTCCCCCSTTTHHHHHHHHHSCTTCCCSCCSEEEEESCCCCCHHHHHHHHHHTTTSEE
T ss_pred hhhHHHHHHHHHHHhhcc--cCCcccChHHHHHHHHHHHhccccccccCCceEEEEeCCCCCHHHHHHHHHHhcCCce
Confidence 456799999987765543 223456788888888887654332 1347889999999999887
No 11
>d1wr6a1 a.7.8.1 (A:211-300) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=35 Score=20.79 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHHHHhhCCCCchHHHHHH---HHHhhHhhhhcccccch
Q psy10490 37 IEHVLNRLPHADPVVAETH---EGSYGVWIIFEDIREGR 72 (121)
Q Consensus 37 Ie~vL~RL~~ad~~IADLL---vemLgVLAsYS~~~~~~ 72 (121)
|.+++....+-|+.++++| =++--|+.+|..+.+||
T Consensus 52 i~~li~~~~~dee~l~elL~~ND~L~~vl~~y~~~~~G~ 90 (90)
T d1wr6a1 52 LFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQ 90 (90)
T ss_dssp HHHHHHTCCTTCSSHHHHHHHHHHHHHHHTHHHHTTTCC
T ss_pred HHHHHhhcCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCC
Confidence 4455555555567788755 36778899999988885
No 12
>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.10 E-value=25 Score=21.34 Aligned_cols=19 Identities=37% Similarity=0.861 Sum_probs=15.3
Q ss_pred eeeeccceeEEeecceecchh
Q psy10490 90 MLYCQGDIALVTNRWVFSSEQ 110 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~ 110 (121)
-.+|.| +|++.|||.++..
T Consensus 23 ~~~C~G--tLIs~~~VLTaAh 41 (228)
T d1bioa_ 23 AHLCGG--VLVAEQWVLSAAH 41 (228)
T ss_dssp EEEEEE--EEEETTEEEECGG
T ss_pred cEEEEE--EEEeCCEEEECce
Confidence 357998 7899999988753
No 13
>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}
Probab=20.02 E-value=28 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.984 Sum_probs=15.5
Q ss_pred CceeeeccceeEEeecceecch
Q psy10490 88 DNMLYCQGDIALVTNRWVFSSE 109 (121)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~ 109 (121)
+...+|.| +|++.|||.++-
T Consensus 25 ~~~~~C~G--tLIs~~~VLTaA 44 (230)
T d2hlca_ 25 QRRVWCGG--SLIDNKWILTAA 44 (230)
T ss_dssp SCEEEEEE--EEEETTEEEECH
T ss_pred CCeeEEEE--EEEeCCEEEEee
Confidence 45667999 689999997653
Done!