RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10490
         (121 letters)



>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics,
           NPPSFA, national project O structural and functional
           analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
          Length = 232

 Score = 29.8 bits (67), Expect = 0.18
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 36  LIEHVLNRLPHADP---VVAETHEGSYGVWIIFEDIREGRIQEGVGAETH--LSAGQDNM 90
           ++E VL  L  A      V E         +   D      + G+       L   +  +
Sbjct: 34  MVEWVLEALYAAGLSPVYVGENPGLVPAPALTLPD------RGGLLENLEQALEHVEGRV 87

Query: 91  LYCQGDIALVTNRWV 105
           L   GDI  +T   V
Sbjct: 88  LVATGDIPHLTEEAV 102


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 28.8 bits (63), Expect = 0.32
 Identities = 6/35 (17%), Positives = 13/35 (37%), Gaps = 16/35 (45%)

Query: 22 RKSVRNLQACTDIGLIEHVLNRL----PHADPVVA 52
          +++++ LQA             L      + P +A
Sbjct: 19 KQALKKLQA------------SLKLYADDSAPALA 41


>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
           genomics consortium, TBC D SGC, hydrolase activator;
           1.90A {Homo sapiens}
          Length = 294

 Score = 28.1 bits (62), Expect = 0.62
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 16  VFIAILRKSVRNLQACTDIGLIEHVLNRLPH--ADPVVAETHE 56
           V + IL      + A      I   L  +P   +D +V++  +
Sbjct: 239 VAVEILLTFKIKVMALNSAEKITKFLENIPQDSSDAIVSKAID 281


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.4 bits (57), Expect = 3.6
 Identities = 13/91 (14%), Positives = 22/91 (24%), Gaps = 37/91 (40%)

Query: 2   GKLGHNCGQAEIWSVFIAILRKSVRNLQACTD---------------IG-------LIEH 39
           G LG   G             K+   L  C                 +        ++E 
Sbjct: 157 GVLG--SG-------------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 40  VLNRLPHADPVVAETHEGSYGVWIIFEDIRE 70
           +   L   DP      + S  + +    I+ 
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232


>3te8_A Sensor histidine kinase RISS; structural genomics, seattle
           structural genomics center for infectious disease,
           ssgcid; 1.70A {Burkholderia pseudomallei} PDB: 3lr4_A
          Length = 127

 Score = 24.5 bits (53), Expect = 8.0
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 36  LIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66
           +   + +RL   D V+A++     GVWI F+
Sbjct: 78  IEHDIRSRLG-DDTVIAQSVNDIPGVWISFK 107


>3lr0_A Sensor protein; niaid, seattle structural genomics center for
           infectious DIS ssgcid, PH, RISS, iodide phased,
           burkholder melioidosis; 1.90A {Burkholderia
           pseudomallei} PDB: 3lr3_A 3lr5_A
          Length = 143

 Score = 24.5 bits (53), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 36  LIEHVLNRLPHADPVVAETHEGSYGVWIIFE 66
           +   + +RL   D V+A++     GVWI F+
Sbjct: 94  IEHDIRSRLG-DDTVIAQSVNDIPGVWISFK 123


>3d5n_A Q97W15_sulso; NESG, SSR125, structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium; 2.80A {Sulfolobus solfataricus}
          Length = 197

 Score = 24.6 bits (54), Expect = 9.6
 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 14/76 (18%)

Query: 36  LIEHVLNRLPHADPVVAETHEGS------YGVWIIF-EDIREGR---IQEGVGAETHLSA 85
           +I   +      + ++      +          +I+     EG    ++ G+        
Sbjct: 30  IIMRTIRIYGDLEKIIIVGKYVNEMLPLLMDQIVIYNPFWNEGISTSLKLGLRF----FK 85

Query: 86  GQDNMLYCQGDIALVT 101
             D +L   GD+  VT
Sbjct: 86  DYDAVLVALGDMPFVT 101


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0597    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,888,517
Number of extensions: 99825
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 11
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)