RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10490
         (121 letters)



>d1tlta2 d.81.1.5 (A:128-267) Virulence factor MviM {Escherichia
           coli [TaxId: 562]}
          Length = 140

 Score = 24.1 bits (52), Expect = 5.1
 Identities = 11/36 (30%), Positives = 15/36 (41%)

Query: 60  GVWIIFEDIREGRIQEGVGAETHLSAGQDNMLYCQG 95
           G  I   D+RE R + G G       G  + L  +G
Sbjct: 105 GALIDITDMREWREERGQGVVHKPIPGWQSTLEQRG 140


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.430 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 459,893
Number of extensions: 18287
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 4
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)