Query psy10491
Match_columns 520
No_of_seqs 451 out of 1927
Neff 10.7
Searched_HMMs 13730
Date Fri Aug 16 19:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10491.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10491hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 2.5E-42 1.8E-46 343.4 24.1 409 26-458 19-433 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 1.8E-29 1.3E-33 246.5 17.9 382 36-458 11-402 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.5 8.6E-15 6.3E-19 141.1 9.8 151 68-223 252-404 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 7.1E-13 5.1E-17 129.3 13.2 160 284-460 45-208 (447)
5 d2axtt1 f.23.34.1 (T:1-30) Pho 20.1 48 0.0035 15.8 3.3 11 214-224 18-28 (30)
6 d2iuba2 f.17.3.1 (A:286-349) M 17.8 83 0.0061 18.8 4.1 25 195-219 36-60 (64)
7 d1otsa_ f.20.1.1 (A:) Clc chlo 13.9 3.7E+02 0.027 23.2 16.4 39 152-190 144-184 (444)
8 d1v54g_ f.23.2.1 (G:) Mitochon 6.1 1.9E+02 0.014 18.4 2.7 21 197-217 16-36 (84)
9 d1q90n_ f.23.27.1 (N:) PetN su 5.6 2E+02 0.014 13.8 3.0 22 76-97 7-28 (31)
10 d2b0la1 a.4.5.66 (A:167-257) G 4.0 1.5E+02 0.011 18.7 0.9 23 91-113 33-55 (91)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.5e-42 Score=343.35 Aligned_cols=409 Identities=17% Similarity=0.188 Sum_probs=314.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcc
Q psy10491 26 GLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSH 105 (520)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr 105 (520)
.+++||.++..++++++..++++..++.+.|.+. |+|+|.+|+|++.+++.+++.++++++|+++||+|||
T Consensus 19 ~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~---------~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r 89 (447)
T d1pw4a_ 19 YRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR 89 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT---------SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence 3456788888899999999999999999988775 5799999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhHhh--hHH-HHHHHHHHHhccccCchhhHHHHHhhhcCCCcchhHHHHHHHHhHHHHHHhh
Q psy10491 106 KMLAYGMVVNAVFALLVPVSSQ--SIW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY 182 (520)
Q Consensus 106 ~~l~~~~~~~~~~~~~~~~~~~--~~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~G~~~g~ 182 (520)
+++.++.++.+++.+++++++. +++ .+++.|++.|++.+...+...++++|++|+++|++++++.+.+..+|.++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~ 169 (447)
T d1pw4a_ 90 VFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPP 169 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhh
Confidence 9999999999999999887631 256 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhcc
Q psy10491 183 PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVK 262 (520)
Q Consensus 183 ~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (520)
.+++.+.... .+||+.|++.+.+.++..++.+++++|+|++......++.+....+...+..+++....+...+..++
T Consensus 170 ~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (447)
T d1pw4a_ 170 LLFLLGMAWF--NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLP 247 (447)
T ss_dssp HHHHHHHHHT--CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSS
T ss_pred hhhhhHhhhh--hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhhhhcccchhhccccccchhhHHHHHHHc
Confidence 9988877652 58999999999999887888888888877654333222211100000011111122233345667888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhh
Q psy10491 263 SGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLM 342 (520)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 342 (520)
+|.++......++.....+....+.|.|+.+.++++..+.+.......+..+++.++.|++.||+++++....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~------- 320 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT------- 320 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-------
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988764311
Q ss_pred hhhhchhhhhhhhhhhccCC-ChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhH-HhHHHHHH
Q psy10491 343 TSIGEYGPGLMFIIPVILGF-THTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVV-GMLAPTIS 419 (520)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g-~~i~~~~~ 419 (520)
......+..++......... +.+......++.++......+.......+..|++ +|++.|+.+.+.+++ ..++|.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~ 400 (447)
T d1pw4a_ 321 GVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 400 (447)
T ss_dssp HHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222223333322222 3334344444434444455556666777777776 999999999998875 56789999
Q ss_pred HHhhccccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 420 GLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 420 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
|.+.| ..++...|++.+++.+++.++.+.+..+
T Consensus 401 g~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 401 GYTVD------FFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHHHH------SSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH------HhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 6688888888888777777666655443
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=1.8e-29 Score=246.53 Aligned_cols=382 Identities=11% Similarity=0.051 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHhhhheeeeeccCCCCCcccCCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHH
Q psy10491 36 MLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVN 115 (520)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~ 115 (520)
.+.+.++...+....+.+.+|.... +++|+|.+++|++.+++.+++.++++++|+++||+||||+++++..+.
T Consensus 11 ~l~~~~f~~~~~~~~~~~~l~~~l~-------~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~ 83 (417)
T d1pv7a_ 11 MFGLFFFFYFFIMGAYFPFFPIWLH-------DINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGM 83 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 3444455555555566666665331 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHhhh--HH-HHHHHHHHHhccccCchhhHHHHHhhhcCC--CcchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 116 AVFALLVPVSSQS--IW-CLAAVRFIQGMGEGPIVPCTHAILAKWIPP--GERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 116 ~~~~~~~~~~~~~--~~-~l~~~r~l~G~g~~~~~~~~~~~i~~~~~~--~~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
.++.++..+.... .. ..++.+.+.+.+.+...........+..++ +++....+........+..+++.+++.+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 163 (417)
T d1pv7a_ 84 LVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccccccc
Confidence 9888888776411 23 456677777777666666655555554433 345667788888889999999999999887
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCChHHHHHHHhhccCCccccccccCccchhhhccchhHHHHH
Q psy10491 191 GTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSIL 270 (520)
Q Consensus 191 ~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (520)
. +|+..+........+..++..+..+|+++..++.+++++. +++.......+..+++..+...
T Consensus 164 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 226 (417)
T d1pv7a_ 164 I----NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGAN-------------HSAFSLKLALELFRQPKLWFLS 226 (417)
T ss_dssp H----CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHHHHSC-------------CCCCCHHHHHHHTTSSHHHHHH
T ss_pred c----cccccccchhhHHHHHHHHHHHHhcccccchhhhhhhhhh-------------cccccccccccccccccccchh
Confidence 4 7777777777777776777777777766654433222110 1122222333444445544444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhh---cCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhc
Q psy10491 271 VAHMGQNFGYETLMTMLPTFLKEV---LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGE 347 (520)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~ 347 (520)
.................+.+.... .+.+....+.......++..++..+.+++.||.++++.+ .++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~----------~~~~ 296 (417)
T d1pv7a_ 227 LYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNAL----------LLAG 296 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHH----------HHHH
T ss_pred hhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccch----------hhhH
Confidence 444444444434433333333322 234455667778888888999999999999999999886 5666
Q ss_pred hhhhhhhhhhhccCCChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHH-HHHHhhHHhHHHHHHHHhhcc
Q psy10491 348 YGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSIT-NCSANVVGMLAPTISGLLLNW 425 (520)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~-~~~~~~g~~i~~~~~g~l~~~ 425 (520)
.+..+..+.+.+.++..... ...++.+...+...+....+..+..|++ |+++.|+. +....+|..++|.+.|++.|
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~- 374 (417)
T d1pv7a_ 297 TIMSVRIIGSSFATSALEVV-ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYE- 374 (417)
T ss_dssp HHHHHHHHHHHTCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 66667666666665443333 3333434444555666666777777665 99999985 45677999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhcCC
Q psy10491 426 FQHDEMLSWKVVFLVSAVLYITCATVYLLFSSG 458 (520)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (520)
..|++..|++.+++.++..++.++..++
T Consensus 375 -----~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 402 (417)
T d1pv7a_ 375 -----SIGFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp -----HHCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----HHCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6789999999988888877776666544
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.52 E-value=8.6e-15 Score=141.11 Aligned_cols=151 Identities=9% Similarity=0.015 Sum_probs=134.3
Q ss_pred CCCCCChhhhHHHHHHHHHHHHHhhhhhhhhhcccCcchhHHHHHHHHHHHHHHHHhHhhhHH-HHHHHHHHHhccccCc
Q psy10491 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW-CLAAVRFIQGMGEGPI 146 (520)
Q Consensus 68 ~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-~l~~~r~l~G~g~~~~ 146 (520)
++.+.+....+...+...++..++..+.+++.||+|+|+.+.++.++.+++.++..+.+ +. .+++..++.|++.+..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~ 329 (417)
T d1pv7a_ 252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMFEVPFL 329 (417)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc--ccchhhHHHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999999999999999999998885 55 8888999999999999
Q ss_pred hhhHHHHHhhhcCCCcchhHHHHH-HHHhHHHHHHhhhhhhhhhccccccCcchHHHHHHHHHHHHHHHHHHHhhcCC
Q psy10491 147 VPCTHAILAKWIPPGERSFLGGIV-YSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223 (520)
Q Consensus 147 ~~~~~~~i~~~~~~~~rg~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~~gwr~~f~i~~~~~~~~~~~~~~~~~e~~ 223 (520)
.+...+++.|.+|+++|+++.++. +....+|..++|.++|++.+. .||+..|++.+++.++..++..+.++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999986 456779999999999999998 89999999999988887777777766543
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.40 E-value=7.1e-13 Score=129.32 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=116.5
Q ss_pred HHHhHHHHHhhcCCCcchhHHHHHhHHHHHHHHHHHHHHHHHHHHhhccccccchhhhhhhhhchhhhhhhhhhhccC--
Q psy10491 284 MTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG-- 361 (520)
Q Consensus 284 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 361 (520)
....| ++++ +|+|..+.|++.+...++..++.++.|+++||+|||+.+ .++.++..++.+......
T Consensus 45 ~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~----------~~~~~~~~~~~~~~~~~~~~ 112 (447)
T d1pw4a_ 45 ALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFL----------PAGLILAAAVMLFMGFVPWA 112 (447)
T ss_dssp HHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH----------HHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH----------HHHHHHHHHHHhhccccchh
Confidence 33344 5566 699999999999999999999999999999999999987 455555555555444332
Q ss_pred -CChHHHHHHHHHHHHHhhccccccceeeccCCCCc-chhHHHHHHHHHhhHHhHHHHHHHHhhccccccccchhHHHHH
Q psy10491 362 -FTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCF-AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFL 439 (520)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~~~~~~~~~~ 439 (520)
++.....+.-++.+.+.+...+....+..+..|++ |++++|+.+....+|..++|.+.+.+.+. ..+|+..++
T Consensus 113 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~-----~~~w~~~~~ 187 (447)
T d1pw4a_ 113 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW-----FNDWHAALY 187 (447)
T ss_dssp HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH-----TCCSTTCTH
T ss_pred hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh-----hhcccccch
Confidence 23334444444444444556666677777777655 99999999999999999999998887762 347788888
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q psy10491 440 VSAVLYITCATVYLLFSSGRK 460 (520)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~ 460 (520)
+.+.+.++..++.+...++.+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~ 208 (447)
T d1pw4a_ 188 MPAFCAILVALFAFAMMRDTP 208 (447)
T ss_dssp HHHHHHHHHHHHHHHHCCCSS
T ss_pred hhhhhHHHHHHHHHHhcccch
Confidence 887777776666666554433
No 5
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.12 E-value=48 Score=15.76 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=6.1
Q ss_pred HHHHHhhcCCC
Q psy10491 214 LFIFLVYENPH 224 (520)
Q Consensus 214 ~~~~~~~e~~~ 224 (520)
....+.+|+|+
T Consensus 18 ffaiffreppr 28 (30)
T d2axtt1 18 FFAIFFREPPR 28 (30)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHHhcCCCC
Confidence 33445677664
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=17.77 E-value=83 Score=18.80 Aligned_cols=25 Identities=12% Similarity=0.199 Sum_probs=9.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHh
Q psy10491 195 QGWPAIFYVFGVICLIWCVLFIFLV 219 (520)
Q Consensus 195 ~gwr~~f~i~~~~~~~~~~~~~~~~ 219 (520)
.+|.+.|++...+.++..++.+++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 36 LRWKWGYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp ------CHHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666655555555444444443
No 7
>d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]}
Probab=13.91 E-value=3.7e+02 Score=23.18 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=28.3
Q ss_pred HHHhhhcCCC--cchhHHHHHHHHhHHHHHHhhhhhhhhhc
Q psy10491 152 AILAKWIPPG--ERSFLGGIVYSGAQFGTIISYPVSGYLAY 190 (520)
Q Consensus 152 ~~i~~~~~~~--~rg~~~~~~~~~~~~G~~~g~~l~~~l~~ 190 (520)
..+.++++.+ ++.+.+-...++.+++.+.+.+++|.+..
T Consensus 144 ~~l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa 184 (444)
T d1otsa_ 144 RMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFI 184 (444)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhhh
Confidence 4556666533 33466667888889999999999998764
No 8
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.09 E-value=1.9e+02 Score=18.44 Aligned_cols=21 Identities=14% Similarity=0.472 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q psy10491 197 WPAIFYVFGVICLIWCVLFIF 217 (520)
Q Consensus 197 wr~~f~i~~~~~~~~~~~~~~ 217 (520)
||-+-++.++++++++.+-.+
T Consensus 16 Wkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998888878777775544443
No 9
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=5.57 E-value=2e+02 Score=13.83 Aligned_cols=22 Identities=14% Similarity=0.357 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhh
Q psy10491 76 ERGLLLSSFFYGYVLTQIPIGL 97 (520)
Q Consensus 76 ~~g~~~s~~~~~~~~~~~~~g~ 97 (520)
+++|......+...++..+||+
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Confidence 4566666666666666666664
No 10
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.01 E-value=1.5e+02 Score=18.72 Aligned_cols=23 Identities=0% Similarity=-0.016 Sum_probs=0.0
Q ss_pred hhhhhhhhhcccCcchhHHHHHH
Q psy10491 91 TQIPIGLLTKNHDSHKMLAYGMV 113 (520)
Q Consensus 91 ~~~~~g~l~Dr~Grr~~l~~~~~ 113 (520)
|.+++..++||.|-.+..++-.+
T Consensus 33 GllvASkiADrvgiTRSVIVNAL 55 (91)
T d2b0la1 33 GLLVASKIADRVGITRSVIVNAL 55 (91)
T ss_dssp EEECHHHHHHHHTCCHHHHHHHH
T ss_pred ceEeehhhhhhhCchHHHHHHHH
Done!