RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10491
(520 letters)
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 335 bits (860), Expect = e-110
Identities = 155/454 (34%), Positives = 227/454 (50%), Gaps = 29/454 (6%)
Query: 33 TTFMLFIGMANAYVMRTNM------SVAIVAMTNPESSIHVDSKS--------------W 72
+F LF+ + S+ +VAM N E+S + S W
Sbjct: 14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKW 73
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ-SIWC 131
S +GL+LSS FYG ++ QIP+G L + + GM +++V ++++P ++ I
Sbjct: 74 SGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIAL 133
Query: 132 LAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYG 191
+ R IQG+ +G + P TH I+ KW PP ERS L G+ SG Q GT I P+SG+L
Sbjct: 134 VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCE- 192
Query: 192 TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLK 251
GWP IFYVFG++ W +L+ ++P +S EK+YI S+ G
Sbjct: 193 -SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGS---T 248
Query: 252 ASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYI 311
S+P I KS P +I A G + Y L T LPTF+ VL +NGL+S+ PY+
Sbjct: 249 RQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYL 308
Query: 312 AMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCL 371
++ S YLAD+ K LS A RK+ IG GPG+ L TI+ L
Sbjct: 309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIIL 368
Query: 372 ILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEM 431
LA A + G AG +N +D++P F G + IT + G++A T++G +L+ D
Sbjct: 369 TLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILS---QDSK 425
Query: 432 LSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
W +VFL+ A + I C YL+F S +Q W K
Sbjct: 426 NVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAK 459
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 128 bits (323), Expect = 8e-33
Identities = 95/427 (22%), Positives = 175/427 (40%), Gaps = 81/427 (18%)
Query: 34 TFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQI 93
+LF+G + + R +S A+ + + S + GL++S+F GY L +
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSL 52
Query: 94 PIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAI 153
G L+ ++L G+++ A+ +LL+ +S S+W L RF+ G+G G + P A+
Sbjct: 53 LAGYLSDRFGRRRVLLLGLLLFALGSLLLAFAS-SLWLLLVGRFLLGLGGGALYPAAAAL 111
Query: 154 LAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCV 213
+A+W PP ER G+ +G G ++ + G LA GW +F + ++ L+ +
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE---SLGWRWLFLILAILGLLLAL 168
Query: 214 LFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAH 273
L +FL+ L + +A
Sbjct: 169 LLLFLL--------------------------------------------RLLLLLALAF 184
Query: 274 MGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333
+FGY L+T LP +L+EVL + GL+ + + + + + L+D R+++L
Sbjct: 185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL 244
Query: 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDIS 393
GL+ +L P++ L++A+ G + ++
Sbjct: 245 LLI--------------GLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLA 290
Query: 394 PCFA-----GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITC 448
A G + N ++ G L P ++GLLL + + VFL+ A L +
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL------DTGGYGGVFLILAALALLA 344
Query: 449 ATVYLLF 455
A + LL
Sbjct: 345 ALLLLLL 351
Score = 50.4 bits (121), Expect = 1e-06
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 5/158 (3%)
Query: 63 SSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHK-MLAYGMVVNAVFALL 121
+ S E GLLLS F G +L + GLL+ + +L G+++ A+ LL
Sbjct: 199 PLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLL 258
Query: 122 VPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIIS 181
+ ++ L A+ + G G G P + ++ PP R G+ + G +
Sbjct: 259 LALAPSLALLLVAL-LLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALG 317
Query: 182 YPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLV 219
++G L G+ +F + + L+ +L + L
Sbjct: 318 PLLAGLLLDT---GGYGGVFLILAALALLAALLLLLLP 352
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 123 bits (310), Expect = 3e-31
Identities = 93/381 (24%), Positives = 160/381 (41%), Gaps = 36/381 (9%)
Query: 37 LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIG 96
LF+ A + R+ + A+ + S E GLLL++F GY L Q G
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLA-------EDLGISPTEIGLLLTAFSLGYALAQPLAG 53
Query: 97 LLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAK 156
L+ ++L G+++ A+ LL + + S+W L +R +QG+G G + P A++A
Sbjct: 54 RLSDRFGRRRVLLIGLLLFALGLLL-LLFASSLWLLLVLRVLQGLGGGALFPAAAALIAD 112
Query: 157 WIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFI 216
W PP ER G++ +G G + + G LA L GW A F + ++ L+ VL
Sbjct: 113 WFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS---LFGWRAAFLILAILALLAAVLAA 169
Query: 217 FLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276
L+ P KR E+ A +P ++ P L +L+A +
Sbjct: 170 LLLPRPPPESKRPKPAEE---------------APAPLVPAWKLLLRDPVLWLLLALLLF 214
Query: 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG 336
F + L+T LP + EVL + GL+ + I +L L+D G
Sbjct: 215 GFAFFALLTYLPLYQ-EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRL--------G 265
Query: 337 ATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPC- 395
R+L+ ++ + + + L + +V L+L G ++ D++P
Sbjct: 266 RRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKE 325
Query: 396 FAGILMSITNCSANVVGMLAP 416
G + N + ++ G L P
Sbjct: 326 ERGTASGLYNTAGSLGGALGP 346
Score = 51.7 bits (124), Expect = 4e-07
Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 22/190 (11%)
Query: 269 ILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFI 328
+ +A G L LP +L E L + GL+ + + + L+D F
Sbjct: 1 LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFG 60
Query: 329 RKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT--IVCLILAMACNGGIYAGFK 386
R+++L G L + ++L F + +V +L G ++
Sbjct: 61 RRRVLLIGL-------------LLFALGLLLLLFASSLWLLLVLRVLQGLGGGALFPAAA 107
Query: 387 VNHIDISP-CFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLY 445
D P G + + + + L P + GLL + F W+ FL+ A+L
Sbjct: 108 ALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLF------GWRAAFLILAILA 161
Query: 446 ITCATVYLLF 455
+ A + L
Sbjct: 162 LLAAVLAALL 171
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 121 bits (306), Expect = 3e-30
Identities = 96/394 (24%), Positives = 159/394 (40%), Gaps = 33/394 (8%)
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCL 132
S + G + S+F +GYV+ Q P G L + K LA +V+ VF L + + L
Sbjct: 27 SAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA-GAYVSL 85
Query: 133 AAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGT 192
+R + G E P P I+A W P ER+ I S G II P+ G++
Sbjct: 86 YILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWI---L 142
Query: 193 FLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE--DL 250
W F + GV+ +IW VL++ + + P + EE++YI + GG + E
Sbjct: 143 IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPP-QKAKWLTEEEKYI---VVGGLLAEQQGK 198
Query: 251 KASSIPWGDI---VKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISA 307
S+ I +K + + N G +T PT+L + +++ G +++
Sbjct: 199 GPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMAS 258
Query: 308 TPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF-THTP 366
P I FI + L+D +R+ A RK + ++ +L F T+
Sbjct: 259 LPGIVGFIGMILGGRLSDLLLRRGKSLVFA-RKT--------AIIAGLVLSLLMFATNYV 309
Query: 367 TIVCLILAMACNGGIYAGFKVNHIDISPCF-----AGILMSITNCSANVVGMLAPTISGL 421
I LA+ G G + AG+ + N N+ G++ P + G
Sbjct: 310 NIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA 369
Query: 422 LLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455
+ S+ +V A L + A YLL
Sbjct: 370 IA-----ATTGSFAGALMVVAALALIGALSYLLL 398
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 85.5 bits (212), Expect = 5e-18
Identities = 83/413 (20%), Positives = 148/413 (35%), Gaps = 46/413 (11%)
Query: 38 FIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGL 97
FIG A Y++R N ++A+ + V+ S + GLLLSSF Y +++ +G
Sbjct: 1 FIGYAAYYLVRKNFALAMPYL--------VEEIGLSKTDLGLLLSSFSIAYGISKFVMGS 52
Query: 98 LTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKW 157
++ + L G+++ A+ L S S+W +AA+ + G+ +G P + KW
Sbjct: 53 VSDRSNPRVFLPIGLILCAIVNLFF-GFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKW 111
Query: 158 IPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217
ER G + P+ L L W +F V G+I +I L F
Sbjct: 112 FSRSERGTWVSFWNCSHNVGGGLLPPL--VLFGIAELYSWHWVFIVPGIIAIIVS-LICF 168
Query: 218 LVYENPHSDKRVSVEEKEYILYSIFGGDI-IEDLKASSIPWGDIVKSGPFLSILVAHMGQ 276
L+ + + E+ + E+L I ++ + L ++ +G
Sbjct: 169 LLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLN-KVL-WYIS-LGY 225
Query: 277 NFGYETLMTML---PTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333
F Y +L P +L + F K + + + + +L+D +
Sbjct: 226 VFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRG 285
Query: 334 STGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT------IVCLI-LAMACNGGIYAGFK 386
L+ + +L + P ++CL L G
Sbjct: 286 PLAVFFM----------ALIIV--SLLVYWLNPAANPLMDLICLFALGFLVYGPQ-MLIG 332
Query: 387 VNHIDISPCFA-GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVF 438
V +++P A G A + G+LA G L + F W F
Sbjct: 333 VIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGF------GWAGAF 379
Score = 36.6 bits (85), Expect = 0.028
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 25/176 (14%)
Query: 291 LKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGP 350
L E + GL+ ++ IA I+ V+ ++D + L G
Sbjct: 21 LVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIG-------------- 66
Query: 351 GLMFIIPVILGFTHTPTIVCLILAMACNGGIYA-GFKVNHIDISPCFA----GILMSITN 405
L+ V L F + ++ + A NG G+ ++ F+ G +S N
Sbjct: 67 -LILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWN 125
Query: 406 CSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461
CS NV G L P + + + SW VF+V ++ I + + L Q
Sbjct: 126 CSHNVGGGLLPPLVLFGIAE-----LYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ 176
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 71.5 bits (176), Expect = 2e-13
Identities = 76/387 (19%), Positives = 141/387 (36%), Gaps = 49/387 (12%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRF 137
G L++++ G L + LLT + ++L + + V LL + + S L R
Sbjct: 51 GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL-APSFAVLLLARA 109
Query: 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197
+ G+ G A+ A+ +PPG+R +V++G T++ P+ +L G GW
Sbjct: 110 LAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFL--GQLF-GW 166
Query: 198 PAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPW 257
A F V+ L+ +L L+ P S+ L
Sbjct: 167 RATFLAIAVLALLALLLLWKLL---PPSEIS-------------------GSLPGPLRTL 204
Query: 258 GDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITS 317
+++ L L+A G+ L T + FL+ V F + L+ IA FI +
Sbjct: 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN 264
Query: 318 SVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMAC 377
+ LAD R+ +++ L+ + + L FT + L L
Sbjct: 265 LLGGRLADRGPRRALIA--------------ALLLLALALLALTFTGASPALALALLFLW 310
Query: 378 NGGIYAGFKVNHIDISPCF---AGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSW 434
+ ++ A + S+ + N+ L + GL+L+ +
Sbjct: 311 GFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDAL------GY 364
Query: 435 KVVFLVSAVLYITCATVYLLFSSGRKQ 461
V A L + + LL + ++
Sbjct: 365 AATGWVGAALLLLALLLALLSARKDRR 391
>gnl|CDD|225180 COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and
metabolism].
Length = 448
Score = 67.7 bits (166), Expect = 4e-12
Identities = 79/372 (21%), Positives = 152/372 (40%), Gaps = 32/372 (8%)
Query: 10 IDPATKPPKILKPKPKGLGYRHWTT---FMLFIGMANAYVMRTNMSVAIVAMTNPESSIH 66
KP L Y+ W +FIG A Y+ R N ++A+ A+
Sbjct: 4 KFKPAKPKLRLPASEIDKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPAL-------- 55
Query: 67 VDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
++ S + G+L S+F Y +++ +G+L+ + +A+G++++A+ +L S
Sbjct: 56 IEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILF-GFS 114
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
S++ A + + G +G P + W ER I + G ++ V+
Sbjct: 115 PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVAL 174
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEE-KEYILYSIFGGD 245
LA+ F GW A FY G+I +I ++ +FL+ + P S+ +EE + L
Sbjct: 175 -LAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEK 233
Query: 246 IIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTML---PTFLKEVLHFDMIKN 302
E L A I ++K+ + +A++ F Y + P +L EV F ++K
Sbjct: 234 ENEGLTAWQIFVKYVLKNKLIWLLALANV---FVYVVRYGINDWGPLYLSEVKGFSLVKA 290
Query: 303 GLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGF 362
+ +A + + +L+D + + R M I + + ++ +
Sbjct: 291 NWAISLFEVAGLPGTLLAGWLSDKLFKGR-------RGPMALI--FMLLITA---SLVLY 338
Query: 363 THTPTIVCLILA 374
P L+ A
Sbjct: 339 WLAPNGSYLLDA 350
Score = 32.6 bits (75), Expect = 0.49
Identities = 45/212 (21%), Positives = 76/212 (35%), Gaps = 47/212 (22%)
Query: 266 FLSILVAHMG-----QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL 320
FLSI + + +NF L E + G++ + I ++ V+
Sbjct: 31 FLSIFIGYAAFYLTRKNFNLAMP------ALIEDGGLSKTQLGILGSAFSITYGVSKFVM 84
Query: 321 NYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGG 380
L+D + ++ G L+ S I+ ++ GF +P++ + N G
Sbjct: 85 GVLSDRSNPRYFMAFG----LILSA---------IVNILFGF--SPSLFLFAVLWVLN-G 128
Query: 381 IYAGFKVNHIDISPCFA-----------GILMSITNCSANVVGMLAPTISGLLLNWFQHD 429
+ G PC G SI N S N+ G LAP ++ LL + H
Sbjct: 129 WFQGMGW-----PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA-LLAFFAFH- 181
Query: 430 EMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461
W+ F ++ I A + L R Q
Sbjct: 182 --GGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 65.1 bits (159), Expect = 3e-11
Identities = 78/385 (20%), Positives = 148/385 (38%), Gaps = 60/385 (15%)
Query: 69 SKSW--STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
S W V+ G L S+ G + G L ++L + +++ +VF LL +
Sbjct: 44 SAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLC-ALA 102
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
++ L +RF+ G+G G ++P +A+++++ P R G+++ G G + ++G
Sbjct: 103 TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAG 162
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFI--------FLVYENPHSDKRVSVEEKEYIL 238
+L + GW ++FYV G+ L+ +L + FLV + P + +R+ +
Sbjct: 163 WLIP---VFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQ 219
Query: 239 YSIFGGDIIEDLKASSIPWGDIVK-------SGPFLSILVAHMGQNFGYETLMTMLPTFL 291
+ + KA+ + K + + + + + G L LP +
Sbjct: 220 AE--AQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLM 277
Query: 292 KEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPG 351
E L F + A I S + +LAD +
Sbjct: 278 VE-LGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL--------------LLL 322
Query: 352 LMFIIPVILGFT-HTPTIVCLILAMA--CNGGIYAGFKVNHIDISPCFAGILMSITNCSA 408
L + V++G T +PT++ L+ A+A G +G P T A
Sbjct: 323 LGAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYP---------TAIRA 373
Query: 409 NVVG----------MLAPTISGLLL 423
VG ++ P ++G LL
Sbjct: 374 TGVGWAIGIGRLGAIIGPILAGYLL 398
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 56.9 bits (138), Expect = 7e-10
Identities = 43/144 (29%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRF 137
GLLL+ + G ++ GLLT +L G+ + + + +SS +I L RF
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-NITVLIIARF 59
Query: 138 IQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW 197
+QG G + A++A PP ER G++ +G G ++ P+ G L FL GW
Sbjct: 60 LQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVL--AQFL-GW 116
Query: 198 PAIFYVFGVICLIWCVLFIFLVYE 221
A F ++ L +L FL+ E
Sbjct: 117 RAPFLFLAILALAAFILLAFLLPE 140
>gnl|CDD|129795 TIGR00712, glpT, glycerol-3-phosphate transporter. This model
describes a very hydrophobic protein, predicted to span
the membrane at least 8 times. The two members confirmed
experimentally as glycerol-3-phosphate transporters,
from E. coli and B. subtilis, share more than 50 % amino
acid identity. Proteins of the hexose phosphate and
phosphoglycerate transport systems are also quite
similar [Transport and binding proteins, Other].
Length = 438
Score = 49.5 bits (118), Expect = 3e-06
Identities = 64/310 (20%), Positives = 122/310 (39%), Gaps = 17/310 (5%)
Query: 32 WTTFM-LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVL 90
W F+ +F G A Y++R N ++A+ + + +S E G LS+ Y
Sbjct: 26 WQVFLGIFFGYAAYYLVRKNFALAMPYLV---------EQGFSKGELGFALSAISIAYGF 76
Query: 91 TQIPIGLLTKNHDSHKMLAYGMVVNAVFALL---VPVSSQSIWCLAAVRFIQGMGEGPIV 147
++ +G ++ + L G++++A LL VP ++ SI + + F+ G +G
Sbjct: 77 SKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGW 136
Query: 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVI 207
P + W ER + I G I + L F W A Y +
Sbjct: 137 PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLV-LLGMAWFND-WHAALYFPAIC 194
Query: 208 CLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFL 267
+I + ++ + P S +EE + ++L A I ++ +
Sbjct: 195 AIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLW 254
Query: 268 SILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVL-NYLADY 326
I +A++ ++ PT+LKEV HF + + Y I ++L +++D
Sbjct: 255 YIAIANVFVYLLRYGVLDWSPTYLKEVKHFA-LDKSSWAYFLYEYAGIPGTLLCGWMSDK 313
Query: 327 FIRKKILSTG 336
+ +TG
Sbjct: 314 VFKGNRGATG 323
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 45.4 bits (108), Expect = 6e-05
Identities = 70/325 (21%), Positives = 114/325 (35%), Gaps = 41/325 (12%)
Query: 77 RGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVR 136
L S FF G +L G L+ K+L +V AV +L S + R
Sbjct: 129 VDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT-AFSPNYTVFLVFR 187
Query: 137 FIQGMGEGPIVPCTHAILAKWIPPGER---SFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193
+ GMG G I + +++P +R L + +S + +AY F
Sbjct: 188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-------LLPLVAY--F 238
Query: 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPH---SDKRVSVEEKEYILYSI--FGGDIIE 248
+ W + + + L + V E+P S R +EE IL I G +
Sbjct: 239 IPDWRWLQLAVSLPTFL-FFLLSWFVPESPRWLISQGR--IEEALKILQRIAKINGKKLP 295
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKN-GLISA 307
S D+ S S L N TL M+ F ++ ++ + G +
Sbjct: 296 AEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGG 355
Query: 308 TPYIAMFITSSV------LNYLA-DYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360
Y+ +FI+ V + L D R+ ++ + L+ +PV L
Sbjct: 356 NIYLDLFISGLVELPAKLITLLLIDRLGRRYTMA------ASLLLAGVALLLLLFVPVDL 409
Query: 361 GFTHTPTIVCLILAMACNGGIYAGF 385
F T LA+ GI + F
Sbjct: 410 YFLRT------ALAVLGKFGITSAF 428
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 44.9 bits (107), Expect = 7e-05
Identities = 54/320 (16%), Positives = 105/320 (32%), Gaps = 54/320 (16%)
Query: 160 PGERSFLGGIVYSGAQFGTIISY----PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLF 215
P ER+ L GA G ++ P+ L G +G+ + ++ ++ ++
Sbjct: 132 PKERTSLASYRRIGATIGGLLVAVIAPPLVALLGGGNGAKGYFLAALIIAILAVVGFLIC 191
Query: 216 IFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275
E RVSV ++ S+ + + K+ P L +L+ ++
Sbjct: 192 FAGTKE------RVSVPPEQKEKVSLRDM------------FKALFKNRPLLILLLLYLL 233
Query: 276 QNFGYETLMTMLPTFLKEVLHF-DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILS 334
+L + VL + ++ IA + + + +LA F +K+
Sbjct: 234 NALAMAVRNGLLLYYFTYVLGNAGLF--SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFL 291
Query: 335 TGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI-VCLILAMACNGGIY---AGFKVNHI 390
G + ++ L V ++LA G + +
Sbjct: 292 LGML----------LAAIGLVLLFFLPPGSLWLFLVLVVLAGIGLGLATLLPWAMLADVV 341
Query: 391 DISPC-----FAGILMSITNCSANVVGMLAPTISGLLLNWF--------QHDEMLS--WK 435
D GI S+ + + + G L I GLLL + Q LS
Sbjct: 342 DYGEWKTGKRREGITFSLYSFADKLGGALGGAIVGLLLAFAGYVANATAQSAAALSGIRL 401
Query: 436 VVFLVSAVLYITCATVYLLF 455
+ L+ AVL + + +
Sbjct: 402 LFTLIPAVLALLALLILRFY 421
Score = 29.1 bits (66), Expect = 5.5
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAV-FALLVPVSSQSIWCLAAVR 136
+LL +L L K + GM++ A+ LL + S+W +
Sbjct: 260 SVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLV 319
Query: 137 FIQGMGEGPIVPCTHAILA 155
+ G+G G A+LA
Sbjct: 320 VLAGIGLGLATLLPWAMLA 338
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 44.2 bits (105), Expect = 1e-04
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 4/119 (3%)
Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSG 186
L R + G+G G +P A+ ++ + P R ++Y G FG ++ +
Sbjct: 101 WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGV 160
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPH-SDKRVSVEEKEYILYSIFGG 244
A W IFYV GV L+ L + + E+ + + +++ +L ++FG
Sbjct: 161 LAAGDA---AWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 43.9 bits (102), Expect = 1e-04
Identities = 60/303 (19%), Positives = 121/303 (39%), Gaps = 9/303 (2%)
Query: 71 SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVS-SQSI 129
S + GLLLS+FF GY + + G L + K+L G+++ + LL+ ++ + +
Sbjct: 35 SSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGL 94
Query: 130 WCLAAVRFIQGMGEGPIVPCTHAILAKWIPP-GERSFLGGIVYSGAQFGTIISYPVSGYL 188
L +R +QG+G G ++P A+L++W P ER G+V GA + P+ L
Sbjct: 95 ALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGL 154
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFL-------VYENPHSDKRVSVEEKEYILYSI 241
G L GW A F + ++ L+ +L + L + + + +L +
Sbjct: 155 LLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGKLLLLLLIL 214
Query: 242 FGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIK 301
G ++ L + L + +A + G L+ +LP L +
Sbjct: 215 LLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGAAGGLSALV 274
Query: 302 NGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG 361
I + + + + + ++ + R ++ + L+ ++ + L
Sbjct: 275 GAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILLLVLLLALV 334
Query: 362 FTH 364
T
Sbjct: 335 LTI 337
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 43.4 bits (103), Expect = 2e-04
Identities = 59/298 (19%), Positives = 108/298 (36%), Gaps = 31/298 (10%)
Query: 64 SIHVDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP 123
+ + + STV GL++S F G ++ + G L K L G V+ + ALL
Sbjct: 35 LTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQG 94
Query: 124 VS-SQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY 182
+ +S + L R I G+G G I +++ P R LG + G FG +++
Sbjct: 95 FAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAA 154
Query: 183 PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD----KRVSVEEKEYIL 238
+ L + GW + + +L + + P S + +EE +L
Sbjct: 155 IIGLGLNKYSNSDGWRIPLGL----QFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVL 210
Query: 239 YSIFGGD--------IIEDLKASSIPWGDIVKS--------GPFLSILVAHMGQNF-GYE 281
+ G + L+ S L ++ + Q G
Sbjct: 211 AKLRGVSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGIN 270
Query: 282 TLMTMLPTFLKEV-LHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGAT 338
+ PT + + L ++ ++ ++ FI +L D F R+ +L GA
Sbjct: 271 AIFYYSPTIFETLGLSDSLLVTIIVGVVNFVFTFIAI----FLVDRFGRRPLLLLGAA 324
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 42.4 bits (100), Expect = 5e-04
Identities = 60/339 (17%), Positives = 118/339 (34%), Gaps = 49/339 (14%)
Query: 33 TTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQ 92
T +L +G A + T ++VAI + S + W L +
Sbjct: 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGS-SLSQVQWVITSYMLANA--------IS 53
Query: 93 IPI-GLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTH 151
IP+ G L K + ++ + +LL V+ ++ + R IQG G GP++P +
Sbjct: 54 IPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP-NLELMIIFRVIQGFGGGPLIPLSF 112
Query: 152 AILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211
+ L PP +R I + + G++ W IF + I +I
Sbjct: 113 STLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWI---IENYHWRWIFLINVPIGIIV 169
Query: 212 CVLFIFLVYENPHSDKRVSVEEKEYILYSI-FGGDIIEDLKASSIPWGD--------IVK 262
V+ F + + + +L S+ G + + W D I
Sbjct: 170 VVV-AFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITG 228
Query: 263 SGPFLSILVAHMGQN-------------------------FGYETLMTMLPTFLKEVLHF 297
++ +V + + G +LP +L++VL +
Sbjct: 229 LVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGY 288
Query: 298 DMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG 336
++ GL +A ++S + + D +K+++ G
Sbjct: 289 TALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIG 327
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.5 bits (92), Expect = 0.003
Identities = 60/302 (19%), Positives = 106/302 (35%), Gaps = 34/302 (11%)
Query: 135 VRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFL 194
R + G+G G + A + + P R+ G++ SG G +++ V Y
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQV--YSLVVPVW 163
Query: 195 -QGWPAIFY--VFGVICLIWCVLFI--FLVYENPHSDKR------VSVEEKEYILYSIFG 243
GW A+F+ + +I +W I ++ H+ K + E+ + +I
Sbjct: 164 GDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVM 223
Query: 244 GDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNG 303
++++ W F+ ++V + N + +LPT+LK L
Sbjct: 224 TLAAAMVQSAGKRW------PTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVA 277
Query: 304 LISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFT 363
I I + V +L D+ R+K G + IIPV
Sbjct: 278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLA-----------GQLLIIPVFA-IG 325
Query: 364 HTPTIVCLILAM--ACNGGIYAGFKVNHIDISPCFA-GILMSITNCSANVVGMLAPTISG 420
++ L L GI+ + + P + T N+ G LAP I
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385
Query: 421 LL 422
LL
Sbjct: 386 LL 387
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 39.2 bits (92), Expect = 0.004
Identities = 63/269 (23%), Positives = 94/269 (34%), Gaps = 36/269 (13%)
Query: 116 AVFALLVPVSSQSIWC---LAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS 172
+ LL ++ IW L R IQG G LA++ PPG+R F G
Sbjct: 80 LLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQV 139
Query: 173 GAQFGTIIS----YPVSGYLAYGTFLQ-GWPAIFYVFGVICLIWCVLFIFLVYENPHSDK 227
GA G +++ +S L L+ GW F V V+ LI L
Sbjct: 140 GAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYL------------- 186
Query: 228 RVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV--KSGPFLSILVAHMGQNFGYETLMT 285
R ++EE +F E K P + + PFL L + + + T
Sbjct: 187 RRNLEET-----PVFE-KAQEKHKKKRGPIAETLTKHRKPFLLGLGLVIATTTTFYLITT 240
Query: 286 MLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG-------AT 338
LPT+L + L L+ I FIT + L+D R+ +L A
Sbjct: 241 YLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300
Query: 339 RKLMTSIGEYGPGLMFIIPVILGFTHTPT 367
LM + L F + + +
Sbjct: 301 PLLMALLDSGSFTLFFFLVLGMALIGGMY 329
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 37.7 bits (88), Expect = 0.014
Identities = 24/117 (20%), Positives = 51/117 (43%)
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCL 132
+ G +L++F G +L + +GLL + ++ + V + L+V ++ +
Sbjct: 245 GSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLF 304
Query: 133 AAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLA 189
+ F G+G GPI +L + +P + G +S + + ++G LA
Sbjct: 305 LVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361
Score = 30.0 bits (68), Expect = 3.6
Identities = 46/306 (15%), Positives = 97/306 (31%), Gaps = 39/306 (12%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPV----SSQSIWCLA 133
L + YV+ G L +D K++ ++ AV ++P +IW +
Sbjct: 37 SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVY 96
Query: 134 AVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTF 193
+ I + + P A+L +P + + + Q + Y V G
Sbjct: 97 VLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLS----QAVRSLFYIVG--PGIGGL 150
Query: 194 LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKAS 253
+ I + V + + + + +V V + E ++ D +
Sbjct: 151 MYATLGIKWAIWVDAVGFAISALLIV--------SVRIPELAASEIQALSNAVLRDTREG 202
Query: 254 SIPWGDIVKSGPFLSILVAHMGQNFGYETLMTM---LPTFLKEVLHFDMIKNGLISATPY 310
V P L L+ + F + P + L G + A
Sbjct: 203 I----KFVLKNPLLRTLLL-LALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFG 257
Query: 311 IAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVC 370
+ + + +L L YF R + + + ++ + +++G T +
Sbjct: 258 LGALLGALLLGLLGRYF----------KRMALMTGAIF---VIGLAILVVGLTPPNFPLF 304
Query: 371 LILAMA 376
L+L A
Sbjct: 305 LVLWFA 310
>gnl|CDD|236889 PRK11273, glpT, sn-glycerol-3-phosphate transporter; Provisional.
Length = 452
Score = 37.0 bits (86), Expect = 0.019
Identities = 64/283 (22%), Positives = 115/283 (40%), Gaps = 33/283 (11%)
Query: 32 WTTFM-LFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVL 90
W F+ +F G A Y++R N ++A+ ++ + +S + G LS Y
Sbjct: 28 WQIFLGIFFGYAAYYLVRKNFALAMP---------YLVEQGFSRGDLGFALSGISIAYGF 78
Query: 91 TQIPIGLLTKNHDSHKMLAYGMVVNAVFALL---VPVSSQSIWCLAAVRFIQGMGEGPIV 147
++ +G ++ + L G+++ A L VP ++ SI + + F+ G +G
Sbjct: 79 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGW 138
Query: 148 PCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQG------WPAIF 201
P + W ER GGIV ++ V G L FL G W A
Sbjct: 139 PPCGRTMVHWWSQKER---GGIVSVWN-----CAHNVGGGLPPLLFLLGMAWFNDWHAAL 190
Query: 202 YVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIV 261
Y+ ++ + ++ + P S +EE + + ++L A I ++
Sbjct: 191 YMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVL 250
Query: 262 KSGPFLSILVAHMGQNFGYETLMTML---PTFLKEVLHFDMIK 301
+ I +A++ F Y +L PT+LKEV HF + K
Sbjct: 251 PNKLLWYIAIANV---FVYLLRYGILDWSPTYLKEVKHFALDK 290
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 36.8 bits (86), Expect = 0.027
Identities = 42/230 (18%), Positives = 75/230 (32%), Gaps = 34/230 (14%)
Query: 160 PGERSFLGGIVYSGAQFGTIISY----PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLF 215
P ER+ L A G ++ P+ G G+ V GVI +I +
Sbjct: 144 PQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFC 203
Query: 216 IFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMG 275
F V E + K + S I K+ P L +L+ ++
Sbjct: 204 FFNVKERVVETQPTKTGVKLKLKDSF----------------LLIFKNRPLLLLLLMNLL 247
Query: 276 QNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILST 335
+ +++ ++ VL + L+ + I + L F +KK+
Sbjct: 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI 307
Query: 336 GATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGF 385
G L+ ++G L++ P V LI+ G+ G
Sbjct: 308 GL---LLLAVGY---LLLYFTP--------AGSVVLIVVALIIAGVGTGI 343
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 36.5 bits (85), Expect = 0.031
Identities = 61/299 (20%), Positives = 100/299 (33%), Gaps = 35/299 (11%)
Query: 68 DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKML---AYGMVVNAVFALLVPV 124
+S S+S+ GL++S F G + + G L+ K L A V+ A+ L
Sbjct: 64 NSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF 123
Query: 125 SSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPV 184
+ L R + G+G G L++ P R L + FG +++Y
Sbjct: 124 ALSVEM-LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGF 182
Query: 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD----KRVSVEEKEYILYS 240
GW + LI L ++ P S + VEE L
Sbjct: 183 GSGKVSLNNTLGWRIPLGL----QLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLAR 238
Query: 241 IFGGDIIE----------------DLKASSIPWGDIVKSGP------FLSILVAHMGQNF 278
+ G + + ++ WG + S FL +++ Q
Sbjct: 239 LRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFT 298
Query: 279 GYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGA 337
G +M PT + L+S F + V +L D F R+ +L GA
Sbjct: 299 GINAIMYYSPTIFENA-GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGA 356
>gnl|CDD|131385 TIGR02332, HpaX, 4-hydroxyphenylacetate permease. This protein is
a part of the Major Facilitator Superfamily (Pfam family
pfam07690). Member of this family are found in a number
of proteobacterial genomes, but only in the context of
having genes for 4-hydroxyphenylacetate (4-HPA)
degradation. The protein is characterized by Prieto, et
al. (PMID:9315705) as 4-hydroxyphenylacetate permease in
E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are
shown to competitively inhibit 4-HPA transport and
therefore also interact specificially.
Length = 412
Score = 36.1 bits (83), Expect = 0.043
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVV--NAVFALLVPVSSQSIWCLAAV 135
GL + F+ YV+ IP ++ + + +A MV+ A A + +S++ L
Sbjct: 46 GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLL--- 102
Query: 136 RFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAY--GTF 193
R + G+ E +P L W P R+ + + +SGY+ G
Sbjct: 103 RILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLM 162
Query: 194 -LQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKE 235
L+GW +F + G +I V+ F + ++P K + E+K+
Sbjct: 163 ALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKK 205
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 35.4 bits (82), Expect = 0.060
Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 38/309 (12%)
Query: 79 LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFI 138
+ L+ + G+ Q+ G L+ + +L G+ + A+ +L + +S+ +I L +RF+
Sbjct: 44 MTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN-NIETLLVLRFV 102
Query: 139 QGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWP 198
Q G + A++ P E S + I+ ++ + GY+ +L W
Sbjct: 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL--VWL-SWH 159
Query: 199 AIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWG 258
AIF + ++ L F++ E + R+ + E
Sbjct: 160 AIFAFLSLAGILLSALIFFILPETLPYEARIQI------------STYFETF-------L 200
Query: 259 DIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSS 318
++KS F + + G+ + P +++ GL+ A IAM
Sbjct: 201 LLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG- 259
Query: 319 VLNYLADYFIRKK-----------ILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPT 367
+L FI+K + + A +T+I G M I P++
Sbjct: 260 ---FLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSM 316
Query: 368 IVCLILAMA 376
I + +A A
Sbjct: 317 ISSIAMAYA 325
>gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter;
Provisional.
Length = 490
Score = 34.3 bits (79), Expect = 0.17
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 27/129 (20%)
Query: 277 NFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTG 336
N Y L+T +P++L LH+ LI I M V+ L+D F R+ + G
Sbjct: 263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILG 322
Query: 337 ATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVC--LILAMACNGGIYAGFKVNHIDISP 394
+ + +I P + I ++G I L+LA+ N
Sbjct: 323 SVALFVLAI----PAFILINSNVIGL-----IFAGLLMLAVILN---------------- 357
Query: 395 CFAGILMSI 403
CF G++ S
Sbjct: 358 CFTGVMAST 366
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 33.4 bits (76), Expect = 0.26
Identities = 45/217 (20%), Positives = 93/217 (42%), Gaps = 38/217 (17%)
Query: 126 SQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVS 185
+Q+IW +R + G+ G VP +A++A +P + + G + +G G ++ P++
Sbjct: 104 AQNIWQFLILRALLGL-LGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLG-PLA 161
Query: 186 GYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYEN--PHSDKR-------VSVEEKEY 236
G L ++ G +F++ + + ++ +F + EN P S K V+ +
Sbjct: 162 GGLLADSY--GLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLHMREVVTSLKNPK 219
Query: 237 ILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLH 296
++ S+F +I + SI P L++ V + N ++
Sbjct: 220 LVLSLFVTTLIIQVATGSI--------APILTLYVRELAGNVSNIAFIS----------- 260
Query: 297 FDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKIL 333
G+I++ P +A +++ L L D +KIL
Sbjct: 261 ------GMIASVPGVAALLSAPRLGKLGDRIGPEKIL 291
Score = 29.1 bits (65), Expect = 6.8
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 106 KMLAYGMVVNAVFALLVPVS-SQSIWCLAAVRFIQGMGEGPIVPCTHAIL 154
K+L ++ + + LL+P+S Q+ L +RF+ G +G ++P +L
Sbjct: 289 KILITALIFSVL--LLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 33.5 bits (77), Expect = 0.28
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 17/114 (14%)
Query: 116 AVFAL--LVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGER----SFLGGI 169
A+F + L+ +++ A RF+QG+G G AIL + R S L GI
Sbjct: 76 ALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGI 135
Query: 170 VYSGAQFGTIISY--PVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221
II PV G+L F W ++FY + ++ +L +F++ E
Sbjct: 136 T-------CIIPVLAPVLGHLIMLKF--PWQSLFYTMAAMGILVLLLSLFILKE 180
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 32.7 bits (75), Expect = 0.47
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKM-LAYGMVVNAVFALL-VPVSSQSIW 130
+ E L+ +FF GY + +P GLL K +K + G+++ AV A L P +S +
Sbjct: 46 TYFEASLIQFAFFGGYFIMSLPAGLLIK-KLGYKAGIVLGLLLYAVGAALFWPAASSKSY 104
Query: 131 CLAAVR-FIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
V FI G G + + + P +F + + G I+ + L
Sbjct: 105 GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL 163
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 32.3 bits (74), Expect = 0.56
Identities = 53/322 (16%), Positives = 108/322 (33%), Gaps = 26/322 (8%)
Query: 73 STVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCL 132
ST + G L++ + +I +G L +++ A+ L ++ QS L
Sbjct: 35 STAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVL 94
Query: 133 AAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAY-G 191
+R G+ G C ++ + P + G+ G ++ V +
Sbjct: 95 LLLRLFIGIAGGSFASCM-PWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSL 153
Query: 192 TFLQGWP-------AIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGG 244
F G P A V I L+ +L F+ + P + +S+ G
Sbjct: 154 IFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTG 213
Query: 245 DIIEDLKA--SSIPWGDIVKSGPFLSILVAHMGQNFGYE-TLMTMLPTFLKEVLHFDMIK 301
+ + LK W L++L + FG + ++ F K+ +
Sbjct: 214 ALGDQLKVFRDRHTW--------ILALLYSV---TFGSFLGVSSIFAMFFKDQFGLSKVT 262
Query: 302 NGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILG 361
G ++ + + + ++D + L L ++G + L + P+ L
Sbjct: 263 AGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSF---LGVAMGAFLVVLGLVSPLSLA 319
Query: 362 FTHTPTIVCLILAMACNGGIYA 383
+ + A NG +A
Sbjct: 320 VFIVLFVALFFFSGAGNGSTFA 341
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 32.0 bits (73), Expect = 0.84
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 112 MVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVY 171
++ NA+F L S S LA R + G G +L+K I PG+ + +
Sbjct: 79 VIGNAMFTL-----SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMV 133
Query: 172 SGAQFGTIISYPVSGYLAYGTFLQ---GWPAIFY---VFGVICL--IWC 212
SG ++ P+ GT+L W F VF + L I+
Sbjct: 134 SGMTVANLLGIPL------GTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176
>gnl|CDD|233056 TIGR00619, sbcd, exonuclease SbcD. All proteins in this family for
which functions are known are double-stranded DNA
exonuclease (as part of a complex with SbcC homologs).
This complex functions in the initiation of
recombination and recombinational repair and is
particularly important in regulating the stability of
DNA sections that can form secondary structures. This
family is likely homologous to the MRE11 family. This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 253
Score = 30.5 bits (69), Expect = 1.8
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 80 LLSSFFYGYVLT-QIPIGLLTKNHDSHKMLAYGMVVNAVFALLVP 123
L ++FF IPI +++ NHDS + L+ + + V
Sbjct: 62 LFNAFFRNLSDANPIPIVVISGNHDSAQRLSAAKKLLIELGVFVV 106
>gnl|CDD|226605 COG4120, COG4120, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 293
Score = 30.3 bits (69), Expect = 2.5
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 16/98 (16%)
Query: 369 VCLILAM-------ACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGL 421
+ ++AM G + FK+ + AGIL I S N+ M P + L
Sbjct: 60 LATLVAMVAGAAAGMITGLLNVKFKILTL-----LAGILTMIALYSVNLRIMGRPNLPLL 114
Query: 422 ----LLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455
+ D +L + + L+ VL I + + F
Sbjct: 115 GEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRF 152
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 30.4 bits (69), Expect = 2.8
Identities = 44/280 (15%), Positives = 89/280 (31%), Gaps = 38/280 (13%)
Query: 119 ALLVPVSSQSIWCLAAVRFIQGMG--EGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQF 176
LL + S L + I E V ++L + + G+ ++
Sbjct: 104 FLLWFIPPGSYLLLLLLFLILASIGFEFSNV-FYDSMLPRLTTKDNMGRISGLGWALGYL 162
Query: 177 GTIISYPVSGYLAYGTFLQGWPAIFY-----------VFGVICLIWCVLFIFLVYENPHS 225
G++I G I + G++ +W +LF + N H
Sbjct: 163 GSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHD 222
Query: 226 DKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMT 285
+++S + ++LK++ + +I + L+A G T++
Sbjct: 223 AEKISSPPPTALRNGF------KELKST---FKEIRGRKNLVLFLIARFFYIDGVNTILA 273
Query: 286 MLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345
M F L + LI + + + + +L + F G+ LM +
Sbjct: 274 MGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF--------GSKPVLMIGL 325
Query: 346 GEYGPGLMFIIPVILGFTHTPT--IVCLILAMACNGGIYA 383
++ I + L F + +L GG A
Sbjct: 326 -----VILSIAALYLIFLEGELDFWILGLLVGTSLGGAQA 360
Score = 29.6 bits (67), Expect = 4.8
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 407 SANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYW 463
+ +VV L I+G L DE K V ++ V+ A +YL+F G +W
Sbjct: 296 ALSVVAALGAIIAGFL------DERFGSKPVLMIGLVILSI-AALYLIFLEGELDFW 345
>gnl|CDD|187860 cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; subunit
of the Cascade complex; signature gene for I-E subtype;
also known as Cse1/CasA/YgcL family.
Length = 465
Score = 30.0 bits (68), Expect = 3.6
Identities = 9/37 (24%), Positives = 13/37 (35%)
Query: 2 PDPEATTSIDPATKPPKILKPKPKGLGYRHWTTFMLF 38
P P + P LKP+P +R +L
Sbjct: 275 PHPMTPYRLSKKEGEPLPLKPQPGRALWRDLDALLLG 311
>gnl|CDD|185630 PTZ00451, PTZ00451, dephospho-CoA kinase; Provisional.
Length = 244
Score = 29.5 bits (66), Expect = 3.7
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 143 EGPIVPCTHAILAKW---IPP--GE--RSFLGGIVYSGAQ----FGTIISYPV 184
+ P + CT I A+W + P GE R+ LG I++S AQ G I++ P+
Sbjct: 40 QAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARRALGRIMNPPI 92
>gnl|CDD|236564 PRK09556, uhpT, sugar phosphate antiporter; Reviewed.
Length = 467
Score = 29.6 bits (67), Expect = 4.4
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 35 FMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGYVLTQIP 94
++FIG Y++R N A M + + ST E G++ F Y + +
Sbjct: 32 LVVFIGYLTMYLIRKNFKAAQNDM--------ISTYGLSTTELGMIGLGFSITYGVGKTL 83
Query: 95 IGLLTKNHDSHKMLAYGMVVNAV----FALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCT 150
+G ++ + L + ++++A+ F + S S+ + A+ + G + PC+
Sbjct: 84 VGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCS 143
Query: 151 HAILAKWIPPGER-SFLG 167
++ + +W P +R FLG
Sbjct: 144 YSTITRWTPRRKRGRFLG 161
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 29.6 bits (67), Expect = 4.6
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query: 73 STVER---------GLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLV 122
+T+E+ G++ SS+ G +L I + + + G ++ A+ +LL
Sbjct: 27 TTIEKRFKISSSHSGIISSSYDIGNLLLIIFVSYFGGRGHRPRWIGIGGLLMALGSLLT 85
>gnl|CDD|236291 PRK08565, PRK08565, DNA-directed RNA polymerase subunit B;
Provisional.
Length = 1103
Score = 29.9 bits (68), Expect = 4.7
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Query: 33 TTFMLFIGMANAYVMR---TNMSVAIVAMT--NPESSIHVDSKSWSTVERGLLLSSFFYG 87
T + IG Y R N VA+++ T N E +I + +K+ ++ERGL S+FF
Sbjct: 688 TRALEIIG----YNDRPAGQNAVVAVLSYTGYNIEDAI-IMNKA--SIERGLARSTFFRT 740
Query: 88 Y 88
Y
Sbjct: 741 Y 741
>gnl|CDD|182260 PRK10133, PRK10133, L-fucose transporter; Provisional.
Length = 438
Score = 29.5 bits (66), Expect = 5.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 78 GLLLSSFFYGYVLTQIPIGLLTK 100
GL+ S+F++GY + IP G+L K
Sbjct: 64 GLIQSAFYFGYFIIPIPAGILMK 86
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 29.0 bits (66), Expect = 5.9
Identities = 31/207 (14%), Positives = 64/207 (30%), Gaps = 44/207 (21%)
Query: 164 SFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENP 223
S I+ + +I Y + + G L + G+ + + ++
Sbjct: 110 SKGVRILSAIIIIIFLIGYLAAQLIGGGIILST------LLGIP-YWTGAIILAVIV--- 159
Query: 224 HSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKS------GPFLSILVAHMGQN 277
ILY++FGG L+A + W D+++ L+
Sbjct: 160 -------------ILYTVFGG-----LRAVA--WTDVIQGVLMLIGVILLAFFALSKVGG 199
Query: 278 FGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILST-- 335
G L LP + G + +F+ LA+ I ++ L+
Sbjct: 200 GGLSALAAALPAL-----LLSLGPGGGPGWGTILGLFLLGG-FGVLANPQIVQRFLAAKD 253
Query: 336 GATRKLMTSIGEYGPGLMFIIPVILGF 362
T + + L+ + ++G
Sbjct: 254 EKTARRGLLLAGLLILLIGFLAALIGL 280
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 29.3 bits (66), Expect = 6.0
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 355 IIPVILGFTHTPTIVCLILAMACNGGIYAGFKV-------NHIDISPCFAGILMSITNCS 407
+I P + +ILA + + G+ N IS A L+ + N
Sbjct: 319 FPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNVP 378
Query: 408 ANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLL 454
A +G L I G ++ F+ + + +S + Y+ C+ ++L+
Sbjct: 379 AAGLGYL---IGGFIMKKFKLNVKKAAYFAICLSTLSYLLCSPLFLI 422
>gnl|CDD|112629 pfam03825, Nuc_H_symport, Nucleoside H+ symporter.
Length = 400
Score = 29.0 bits (65), Expect = 6.5
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Query: 367 TIVCLILAMACNGGIYAGF---------KVNHIDISPCFAGILMSITNCSANVVGMLAPT 417
+ L+L+M +G Y F K DI G+ + N NV+G +
Sbjct: 300 GVALLLLSMIVHGVAYDFFNITGYIFVDKEVPKDIRASAQGLFNLMINGVGNVLGSI--- 356
Query: 418 ISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLF 455
+SG+L+ F D + W+ ++LV A + + A +++LF
Sbjct: 357 LSGMLVGMFTTDGSVDWQTLWLVFAGMALALAVLFMLF 394
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 29.1 bits (66), Expect = 7.9
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 31/138 (22%)
Query: 93 IPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGP-IVPCTH 151
+P+G A G+ A+ L+P + L F+ G G IVP +
Sbjct: 302 VPLG------------ALGL---ALSLFLLPTAPSLASVLVLF-FLFGFSAGLFIVP-LN 344
Query: 152 AILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGW----PAIFYVFGVI 207
A++ P E G V + F + + +LA T G +FY+ ++
Sbjct: 345 ALIQFRAPEKEL----GKVLAANNFLQNVG--MLLFLALTTLFSGLGLSPAGLFYLIALV 398
Query: 208 CLIWCVLFIFLVYENPHS 225
LI + + L+ P S
Sbjct: 399 TLIGTLYTLLLL---PDS 413
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 28.8 bits (65), Expect = 8.8
Identities = 42/173 (24%), Positives = 67/173 (38%), Gaps = 39/173 (22%)
Query: 302 NGLISATPYIAM-FITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVIL 360
GL SA Y ++ ++T + +LAD + G R ++ G LM I ++L
Sbjct: 64 TGLFSA--YGSLVYLTPIIGGWLADRVL-------GTRRTIV-----LGAILMAIGHLVL 109
Query: 361 GFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITN-----------CSAN 409
+ L + +A FK N IS G L + N
Sbjct: 110 AISSVSGPGGLYIGLALIIVGTGLFKPN---IS-SLLGELYPKDDPRRDGGFTLFYMGIN 165
Query: 410 VVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQY 462
+ ++AP I+GLL + W V F ++AV I ++LL GR+
Sbjct: 166 IGSLIAPIITGLLAINY------GWHVGFGLAAVGMIIGLVIFLL---GRRHV 209
>gnl|CDD|217490 pfam03318, ETX_MTX2, Clostridium epsilon toxin ETX/Bacillus
mosquitocidal toxin MTX2. This family appears to be
distantly related to pfam01117.
Length = 228
Score = 28.1 bits (63), Expect = 9.5
Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 42 ANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLLLSSFFYGY--VLTQIPIGLLT 99
Y+ +T S + T + + S + R + Y L+
Sbjct: 128 VTLYLYKTTYSGPVDLYTTLSGTFFISIVSSVSFTRDGYVEPASYVLTASWPLYDTIFLS 187
Query: 100 KNHD 103
N D
Sbjct: 188 INSD 191
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.449
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,194,510
Number of extensions: 2717873
Number of successful extensions: 3798
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3687
Number of HSP's successfully gapped: 183
Length of query: 520
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 419
Effective length of database: 6,457,848
Effective search space: 2705838312
Effective search space used: 2705838312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)