RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10491
(520 letters)
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 193 bits (493), Expect = 3e-56
Identities = 76/455 (16%), Positives = 157/455 (34%), Gaps = 28/455 (6%)
Query: 12 PATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS 71
P + P R +F G A Y++R N ++A+ +
Sbjct: 8 PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ---------G 58
Query: 72 WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALL---VPVSSQS 128
+S + G LS Y ++ +G ++ + L G+++ A L VP ++ S
Sbjct: 59 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 118
Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
I + + F+ G +G P + W ER + + G I +
Sbjct: 119 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 178
Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
+ W A Y+ ++ + ++ + P S +EE + + +
Sbjct: 179 M--AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 236
Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
+L A I ++ + I +A++ ++ PT+LKEV HF + K+
Sbjct: 237 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 296
Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
A + + +++D R + + + T +
Sbjct: 297 YEYAGIPGTLLCGWMSDKVFRGNR-GATGVFFMTLVT-----IATIVYWMNPAGNPTVDM 350
Query: 369 VCLILAMACNGGIYAGFKVNHIDISPCFA-GILMSITNCSANVVGML-APTISGLLLNWF 426
+C+I+ G ++ ++++P A G T + G + A I G +++F
Sbjct: 351 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410
Query: 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQ 461
W F+V I + ++ G K+
Sbjct: 411 ------GWDGGFMVMIGGSILAVILLIVVMIGEKR 439
Score = 36.2 bits (84), Expect = 0.027
Identities = 23/174 (13%), Positives = 54/174 (31%), Gaps = 12/174 (6%)
Query: 67 VDSKSWSTVERGLLLSSFFYGYVLTQIPIG-----LLTKNHDSHKMLAYGMVVNAVFALL 121
+ K ++ + + Y + + G + N + + +V A
Sbjct: 280 KEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW 339
Query: 122 VPVSSQSIWCLAAVRFIQGMGEGPIVPC-THAILAKWIPPGERSFLGGIVYSGAQ-FGTI 179
+ + + + I + GP++ HA+ P G G++
Sbjct: 340 MNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALEL--APKKAAGTAAGFTGLFGYLGGSV 397
Query: 180 ISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEE 233
+ + GY GW F V ++ +L I ++ +++ E
Sbjct: 398 AASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL 448
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 1e-06
Identities = 68/433 (15%), Positives = 119/433 (27%), Gaps = 166/433 (38%)
Query: 71 SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIW 130
++ST R L LS +G + + + + F ++P ++
Sbjct: 3 AYST--RPLTLS---HGSLEHVLLV--------PTASFFIASQLQEQFNKILPEPTEGFA 49
Query: 131 C---------LAAVRFI-------QGMGEGPIVPCTHAILAKWIPPGERSFLGG-----I 169
L +F+ + G + L ++ E +L G +
Sbjct: 50 ADDEPTTPAELVG-KFLGYVSSLVEPSKVGQFDQVLNLCLTEF----ENCYLEGNDIHAL 104
Query: 170 VYS---------GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVY 220
I +Y A + P +
Sbjct: 105 AAKLLQENDTTLVKTKELIKNY----ITAR--IMAKRP---------------------F 137
Query: 221 ENPHSDK--RVSVEEKEYILYSIFGG-----DIIEDLKASSIPWGDIVKS-GPFLSILVA 272
+ + R +V E L +IFGG D E+L+ D+ ++ + L+
Sbjct: 138 DKKSNSALFR-AVGEGNAQLVAIFGGQGNTDDYFEELR-------DLYQTYHVLVGDLIK 189
Query: 273 HMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKI 332
ETL ++ T L F GL ++L +L +
Sbjct: 190 FSA-----ETLSELIRTTLDAEKVF---TQGL-------------NILEWLEN------- 221
Query: 333 LSTGATRKLMTSIGEYGPGLMFI--IPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHI 390
T P ++ IP+ P I ++ +A Y
Sbjct: 222 --PSNT-----------PDKDYLLSIPISC-----PLIG--VIQLAH----YVVTAKLL- 256
Query: 391 DISPC-FAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCA 449
+P L T S +V +A + SW+ F VS IT
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVTAVAIAETD------------SWE-SFFVSVRKAIT-- 301
Query: 450 TVYLLFSSG-RKQ 461
+LF G R
Sbjct: 302 ---VLFFIGVRCY 311
Score = 40.4 bits (94), Expect = 0.002
Identities = 30/154 (19%), Positives = 47/154 (30%), Gaps = 47/154 (30%)
Query: 220 YENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFG 279
Y+ + + V + +G I+ DIV + P L H G G
Sbjct: 1636 YKTSKAAQDV-WNRADNHFKDTYGFSIL-----------DIVINNP--VNLTIHFGGEKG 1681
Query: 280 ---YETLMTML------------PTF--LKEVLHFDMIK--NGLISATPY--IAMFITSS 318
E M+ F + E + GL+SAT + A+ +
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 319 VLNYLADYFIRKKILSTGATRKLMT----SIGEY 348
D ++ K G T S+GEY
Sbjct: 1742 AA--FED--LKSK----GLIPADATFAGHSLGEY 1767
Score = 33.9 bits (77), Expect = 0.17
Identities = 54/367 (14%), Positives = 99/367 (26%), Gaps = 153/367 (41%)
Query: 25 KGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKSWSTVERGLL--LS 82
K LG+ G T S +V + SW + + ++
Sbjct: 254 KLLGFTPGELRSYLKGA-------TGHSQGLVTAVAIAET-----DSWESFFVSVRKAIT 301
Query: 83 SFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMG 142
F+ IG+ ++ AY P +S + +
Sbjct: 302 VLFF--------IGV-----RCYE--AY------------PNTSLP---PSILEDSLENN 331
Query: 143 EGPIVPC--------THAILAKWI-------PPGERSFLGGIVYSGA-QFGTIIS-YPVS 185
EG VP T + ++ P G++ + + +GA ++S P S
Sbjct: 332 EG--VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS--LVNGAKNL--VVSGPPQS 385
Query: 186 GYLAYG-------------------TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSD 226
L YG F + F L + + HS
Sbjct: 386 --L-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF---------LPVASPF---HSH 430
Query: 227 KRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHM--GQNFGYETLM 284
V + I +DL +++ + + + I V G +
Sbjct: 431 LLVPASDL-----------INKDLVKNNVSF-----NAKDIQIPVYDTFDGSD------- 467
Query: 285 TMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTS 344
L+ + +G I + I I + + + AT L
Sbjct: 468 ------LRVL-------SGSI--SERIVDCIIRLPVKW-------ETTTQFKATHIL--- 502
Query: 345 IGEYGPG 351
++GPG
Sbjct: 503 --DFGPG 507
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 47.6 bits (114), Expect = 5e-06
Identities = 52/382 (13%), Positives = 102/382 (26%), Gaps = 61/382 (15%)
Query: 79 LLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFI 138
++ ++ Y ++Q+ G ++ ++ GM + + L+ V++ S+ L A +
Sbjct: 39 SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA-VTTSSLTVLIAASAM 97
Query: 139 QGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISY------------PVSG 186
QGMG G + +Y Q S P+ G
Sbjct: 98 QGMGTGVGGVMARTLPRD-------------LYERTQLRHANSLLNMGILVSPLLAPLIG 144
Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDI 246
L + W A + V+C + E D + Y
Sbjct: 145 GLLDTMW--NWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSY---------- 192
Query: 247 IEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLIS 306
+ + F L+ +G G + VL + ++
Sbjct: 193 -----------KTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILF 241
Query: 307 ATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTP 366
P A F + F LM+I
Sbjct: 242 ILPIPAAFFGAWFAGRPNKRF--------STLMWQSVICCLLAGLLMWIPDWFGVMNVWT 293
Query: 367 TIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWF 426
+V L G ++ ++ P AG ++ N+ + L
Sbjct: 294 LLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVL----ASLSAML 349
Query: 427 QHDEMLSWKVVFLVSAVLYITC 448
S ++ + +L + C
Sbjct: 350 PQTGQGSLGLLMTLMGLLIVLC 371
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 6/141 (4%)
Query: 95 IGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQSIWCLAAVRFIQGMGEGPIVPCTHAIL 154
L+ L + +V + ++ S + ++ + ++ +
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFAT-SALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 155 AKWIPPGERSFLGGIVYS-GAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCV 213
+ + + + Q I ++G + Y + G+ + V G++ L + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM-YESI--GFQGAYLVLGLVALGFTL 394
Query: 214 LFIFLVY-ENPHSDKRVSVEE 233
+ +F + P S R V E
Sbjct: 395 ISVFTLSGPGPLSLLRRQVNE 415
Score = 39.9 bits (93), Expect = 0.002
Identities = 30/196 (15%), Positives = 53/196 (27%), Gaps = 24/196 (12%)
Query: 262 KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLN 321
K+ F + F P +L ++ H G+I A + + +
Sbjct: 5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64
Query: 322 YLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGI 381
L+D +K L L G F I + +V I+ G
Sbjct: 65 LLSDKLGLRKYL-------LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117
Query: 382 YAGFKVNHIDISPCFAGILMSITNCSANVVG----------MLAPTISGLLLNWFQHDEM 431
+ +P + ++ S G L +I G++
Sbjct: 118 FNA-------GAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170
Query: 432 LSWKVVFLVSAVLYIT 447
L+ AVL
Sbjct: 171 WLGSGCALILAVLLFF 186
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide
transport, major facilitator SUPE transporter, MFS;
3.30A {Streptococcus thermophilus}
Length = 491
Score = 38.9 bits (91), Expect = 0.003
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 13/122 (10%)
Query: 106 KMLAYGMVVNAV-FALLVPVSSQ-------SIWCLAAVRFIQGMGEGPIVPCTHAILAKW 157
K A G++ + F L+ + S L + +GE I P ++ K
Sbjct: 356 KF-AVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKL 414
Query: 158 IPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIF 217
P S + + + + G+ + + L + A F FG+ ++ ++ +F
Sbjct: 415 APKAFNSQMMSMWFLSSSVGSAL----NAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVF 470
Query: 218 LV 219
L
Sbjct: 471 LS 472
Score = 29.7 bits (67), Expect = 2.6
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 40/208 (19%)
Query: 265 PFLSILVAHMGQNFGYETLMTMLPTFL-----KEVLHFDMIKNGLISATPYIAMFITSSV 319
++ + M + F Y + +L ++ LH I A ++++ ++
Sbjct: 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTI 73
Query: 320 LNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNG 379
++AD I GA + +G L+ + ++L + + + + G
Sbjct: 74 GGFVADRII-------GARPAVF-----WGGVLIMLGHIVLALPFGASALFGSIILIIIG 121
Query: 380 GIYAGFKVNHIDISPCFAGIL-----------MSITNCSANVVGMLAPTISGLLLNWFQH 428
K N +S G L SI N+ +AP I G
Sbjct: 122 --TGFLKPN---VS-TLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-- 173
Query: 429 DEMLSWKVVFLVSAVLYITCATVYLLFS 456
+ V F ++A+ VY
Sbjct: 174 ----GYHVAFSLAAIGMFIGLLVYYFGG 197
>2xut_A Proton/peptide symporter family protein; transport protein,
membrane protein, major facilitator super transporter;
3.62A {Shewanella oneidensis}
Length = 524
Score = 35.4 bits (82), Expect = 0.043
Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 15/130 (11%)
Query: 105 HKMLAYGMVVNAV-FALLVPVSSQ-------SIWCLAAVRFIQGMGEGPIVPCTHAILAK 156
KM G+ + + + ++ + SI+ + GE +
Sbjct: 374 RKM-GAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYS 432
Query: 157 WIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAI------FYVFGVICLI 210
P + + G + + + T + F +F
Sbjct: 433 QAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFA 492
Query: 211 WCVLFIFLVY 220
+F +Y
Sbjct: 493 ILAAIVFALY 502
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.4 bits (78), Expect = 0.095
Identities = 37/261 (14%), Positives = 74/261 (28%), Gaps = 93/261 (35%)
Query: 206 VICLIWCVLFIFLV----YENPHSDK-----RVSVE-------EKEYILYSIFGGDIIED 249
+ +I + L +++ + DK S+ K + S+F
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PS 384
Query: 250 LKASSIP-------WGDIVKSGPFLSI-------LVAHMGQNFGYETLMTMLPTFLKEV- 294
IP W D++KS + + LV + ++ ++ ++
Sbjct: 385 AH---IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIYLELKVKLE 440
Query: 295 ----LHFDMI----------KNGLISATP--YIAMFI-----------TSSVLN--YLAD 325
LH ++ + LI Y I ++ +L D
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-D 499
Query: 326 Y-FIRKKILSTGATRKLMTS--------------IGEYGPGLMFIIPVILGFTHTPTIVC 370
+ F+ +KI S I + P ++ IL F
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 371 LI--------LA-MACNGGIY 382
+ +A MA + I+
Sbjct: 560 ICSKYTDLLRIALMAEDEAIF 580
Score = 34.1 bits (77), Expect = 0.14
Identities = 32/215 (14%), Positives = 64/215 (29%), Gaps = 48/215 (22%)
Query: 273 HMGQNFGYETLMTML--------PTFLKEVLHFDMIKNGLISATPYIAMFITSS------ 318
++ ET++ ML P + H IK + S + + S
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 319 -VL-----NYLADYF-IRKKILSTGATR--KLMTSIGEYGPGLMFIIPVILGFTHTPTIV 369
VL + F + KIL T TR ++ + + + + T
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 370 CLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHD 429
+L Y + D+ + + + ++A +I L W
Sbjct: 306 --LLLK------YLDCRPQ--DLPR-------EVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 430 EMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWD 464
+ K+ ++ + L L + RK +
Sbjct: 349 HVNCDKLTTIIESSL------NVLEPAEYRKMFDR 377
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.34
Identities = 8/45 (17%), Positives = 12/45 (26%), Gaps = 19/45 (42%)
Query: 337 ATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGI 381
A +KL S+ Y P A+A +
Sbjct: 21 ALKKLQASLKLYADD------------SAP-------ALAIKATM 46
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation,
blood coagulation, oxidoreduc blood
coagulation,oxidoreductase; HET: U10; 3.60A
{Synechococcus SP}
Length = 291
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/129 (11%), Positives = 31/129 (24%), Gaps = 8/129 (6%)
Query: 152 AILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYLAYGTFLQGWPAIFYVFGVICLIW 211
+LA + P + + Y+ Y V C+
Sbjct: 82 GVLALAVLPDGLPLVKRWRWPALFGLVSAMTAFEMYMLYLM--------VAVLRQFCMYC 133
Query: 212 CVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILV 271
I + + + + +S + + + + P L
Sbjct: 134 TTAIILVAGLGLVTVLGHRWLDGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLA 193
Query: 272 AHMGQNFGY 280
AH+ Q G
Sbjct: 194 AHLRQIGGT 202
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 29.5 bits (66), Expect = 2.9
Identities = 57/409 (13%), Positives = 117/409 (28%), Gaps = 75/409 (18%)
Query: 71 SWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALL--VPVSSQS 128
+ + + GL+ S+F++GY + IP G+L K + G+ + A+ A L +
Sbjct: 57 TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN 116
Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
FI G G + + + P F + + FG II+ L
Sbjct: 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176
Query: 189 AYG-----------------------TFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHS 225
+ + + + I L+ +L + + S
Sbjct: 177 ILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236
Query: 226 DKRVSVEEKEYILYSIFGGDIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMT 285
D ++ F + + W L+ F Y T
Sbjct: 237 DNHSDAKQGS------FSASLSRLARIRHWRWA-------VLAQ--------FCYVGAQT 275
Query: 286 MLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSI 345
++L ++ A Y+ + + ++ + K++ +
Sbjct: 276 ACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAP----HKVLAAY 331
Query: 346 GEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYA--------GFKVNHIDISPCFA 397
L I G ++ L L A Y + S +
Sbjct: 332 ALIAMALCLISAFAGGHV---GLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGS---S 385
Query: 398 GILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYI 446
I+M+I + G + + G + D + L+ A+ +
Sbjct: 386 FIVMTI------IGGGIVTPVMGFVS-----DAAGNIPTAELIPALCFA 423
>3to3_A Petrobactin biosynthesis protein ASBB; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
alpha-beta structure; HET: MSE ATP; 2.38A {Bacillus
anthracis}
Length = 619
Score = 28.8 bits (64), Expect = 5.6
Identities = 7/34 (20%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
Query: 56 VAMTNPESSIHVDSKSWSTVERGL---LLSSFFY 86
+ M + + ++S+ + +V R + L+ S Y
Sbjct: 4 MDMYHTKILKAIESEDYISVRRRVLRQLVESLIY 37
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A
{Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Length = 273
Score = 27.8 bits (61), Expect = 8.4
Identities = 14/111 (12%), Positives = 31/111 (27%), Gaps = 5/111 (4%)
Query: 342 MTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILM 401
+ I I+P+ G ++ P + + N G + GI+
Sbjct: 16 LERIFNRESEKTVIVPMDHGVSNGPIKGLIDIRKTVNDVAEGG-----ANAVLLHKGIVR 70
Query: 402 SITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVSAVLYITCATVY 452
VG++ G ++ +++ V + V
Sbjct: 71 HGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIRMGADAVSIHVN 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.449
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,170,400
Number of extensions: 496217
Number of successful extensions: 881
Number of sequences better than 10.0: 1
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 35
Length of query: 520
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 422
Effective length of database: 3,965,535
Effective search space: 1673455770
Effective search space used: 1673455770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (26.5 bits)