RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10491
         (520 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score =  111 bits (278), Expect = 4e-27
 Identities = 77/459 (16%), Positives = 161/459 (35%), Gaps = 28/459 (6%)

Query: 12  PATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHVDSKS 71
           P        +  P     R      +F G A  Y++R N ++A+  +           + 
Sbjct: 5   PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV---------EQG 55

Query: 72  WSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFAL---LVPVSSQS 128
           +S  + G  LS     Y  ++  +G ++   +    L  G+++ A   L    VP ++ S
Sbjct: 56  FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS 115

Query: 129 IWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYSGAQFGTIISYPVSGYL 188
           I  +  + F+ G  +G   P     +  W    ER  +  +       G  I   +    
Sbjct: 116 IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLG 175

Query: 189 AYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGGDIIE 248
                        Y+     ++  +    ++ + P S     +EE +      +     +
Sbjct: 176 MAWFNDWHAA--LYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQ 233

Query: 249 DLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISAT 308
           +L A  I    ++ +     I +A++        ++   PT+LKEV HF + K+      
Sbjct: 234 ELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFL 293

Query: 309 PYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTI 368
              A    + +  +++D   R    +TG     + +I         +  +      T  +
Sbjct: 294 YEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA------TIVYWMNPAGNPTVDM 347

Query: 369 VCLILAMACNGGIYAGFKVNHIDISP-CFAGILMSITNCSANVVGM-LAPTISGLLLNWF 426
           +C+I+      G      ++ ++++P   AG     T     + G   A  I G  +++F
Sbjct: 348 ICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 407

Query: 427 QHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRKQYWDK 465
                  W   F+V     I    + ++   G K+  ++
Sbjct: 408 ------GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 15/215 (6%), Positives = 53/215 (24%), Gaps = 4/215 (1%)

Query: 8   TSIDPATKPPKILKPKPKGLGYRHWTTFMLFIGMANAYVMRTNMSVAIVAMTNPESSIHV 67
                              L           +   + YV+  + +  +            
Sbjct: 191 APSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250

Query: 68  DSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSSQ 127
            +           +++       + +    L  N    K             ++    + 
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT 310

Query: 128 SIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPPGERSFLGGIVYS-GAQFGTIISYPVSG 186
           S   +  ++ +       ++      +         + +  + +    Q   I    ++G
Sbjct: 311 SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAG 370

Query: 187 YLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYE 221
            +       G+   + V G++ L + ++ +F +  
Sbjct: 371 NMYESI---GFQGAYLVLGLVALGFTLISVFTLSG 402



 Score = 43.2 bits (100), Expect = 5e-05
 Identities = 42/397 (10%), Positives = 102/397 (25%), Gaps = 30/397 (7%)

Query: 67  VDSKSWSTVERGLLLSSFFYGYVLTQIPIGLLTKNHDSHKMLAYGMVVNAVFALLVPVSS 126
            D    S  + G++ ++     +L Q   GLL+      K L + +    V      +  
Sbjct: 35  HDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94

Query: 127 QSIWCLAAVRFIQGMGEGPIVPCTHAILAKWIPP--GERSFLGGIVYSGAQFGTIISYPV 184
                L     +  +  G  +       A  +     + S      +  A+    + + +
Sbjct: 95  FGPL-LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWAL 153

Query: 185 SGYLAYGTFLQGWPAIFYVFGVICLIWCVLFIFLVYENPHSDKRVSVEEKEYILYSIFGG 244
              +    F      +F++     LI  VL  F   + P S    +     +  +S+   
Sbjct: 154 GASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK-- 211

Query: 245 DIIEDLKASSIPWGDIVKSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGL 304
                    ++      K       ++        ++       T             G 
Sbjct: 212 --------LALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGY 263

Query: 305 ISATPYIAMFITSSVLNYLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTH 364
           ++    +           + +    K              +      +  I         
Sbjct: 264 VTTMGELLNASIMFFAPLIINRIGGKN----------ALLLAGTIMSVRIIGSSFATSAL 313

Query: 365 TPTIVCLILAMACNGGIYAGFKVNHIDISPCFAGILMSITNCSANVVGM-LAPTISGLLL 423
              I+  +        +   FK         F+  +  +  C    + M     ++G + 
Sbjct: 314 EVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY 373

Query: 424 NWFQHDEMLSWKVVFLVSAVLYITCATVYLLFSSGRK 460
                     ++  +LV  ++ +    + +   SG  
Sbjct: 374 ESI------GFQGAYLVLGLVALGFTLISVFTLSGPG 404



 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 27/248 (10%), Positives = 57/248 (22%), Gaps = 10/248 (4%)

Query: 262 KSGPFLSILVAHMGQNFGYETLMTMLPTFLKEVLHFDMIKNGLISATPYIAMFITSSVLN 321
           K+  F    +      F         P +L ++ H      G+I A   +   +   +  
Sbjct: 5   KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFG 64

Query: 322 YLADYFIRKKILSTGATRKLMTSIGEYGPGLMFIIPVILGFTHTPTIVCLILAMACNGGI 381
            L+D    +K L               G  +MF    I  F        L+ ++     +
Sbjct: 65  LLSDKLGLRKYL----------LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL 114

Query: 382 YAGFKVNHIDISPCFAGILMSITNCSANVVGMLAPTISGLLLNWFQHDEMLSWKVVFLVS 441
              F      +      +                   +           + +  V +L S
Sbjct: 115 GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGS 174

Query: 442 AVLYITCATVYLLFSSGRKQYWDKNGGEGRMERGRKWQCVAECELMCLLRRTFQSWILFN 501
               I    ++   +         N              +       L   +     +  
Sbjct: 175 GCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSC 234

Query: 502 ICGLGNQV 509
              + +Q 
Sbjct: 235 TYDVFDQQ 242


>d3bqoa1 a.146.1.1 (A:62-265) TRF1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 204

 Score = 27.1 bits (60), Expect = 4.5
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 276 QNFGYETLMTMLPTFLKEVLH 296
           Q+F Y  +M  + +++  VL 
Sbjct: 168 QHFSYNHMMEKIKSYVNYVLS 188


>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 203

 Score = 26.3 bits (58), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 276 QNFGYETLMTMLPTFLKEVLH 296
           QNF YET    +  FL+  L 
Sbjct: 168 QNFSYETFQQKMLRFLESHLD 188


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.449 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,012,648
Number of extensions: 95161
Number of successful extensions: 284
Number of sequences better than 10.0: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 18
Length of query: 520
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 431
Effective length of database: 1,185,626
Effective search space: 511004806
Effective search space used: 511004806
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)