BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10492
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X7M|A Chain A, Crystal Structure Of Archaemetzincin (Amza) From
          Methanopyrus Kandleri At 1.5 A Resolution
          Length = 195

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 25 LLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYIHQRLLSDVLF 71
          +LS ++   E  + EYL +V   +   ++PE  +S +  + L+  L 
Sbjct: 34 MLSSIVDRFEEHVSEYLGEVKVKKKRAKLPEHAYSKVRGQYLARALL 80


>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
 pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
          Length = 599

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 10/39 (25%), Positives = 23/39 (58%)

Query: 34  ETDIQEYLKKVNNSRPPFRIPEFKWSYIHQRLLSDVLFS 72
           + D+ E++ ++ N RP     + ++++I+Q LL   L+ 
Sbjct: 255 KVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYG 293


>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of
          Fmnl3 Bound To Actin
 pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of
          Fmnl3 Bound To Actin
 pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of
          Fmnl3 Bound To Actin
 pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of
          Fmnl3 Bound To Actin
          Length = 402

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 6  PARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSR 48
          P +  FR+P F W+ +    ++  +FS E D ++ L+ ++  R
Sbjct: 12 PIKTKFRLPVFNWTALKPNQINGTVFS-ELDDEKILEDLDLDR 53


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,523,764
Number of Sequences: 62578
Number of extensions: 83881
Number of successful extensions: 195
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 4
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)