BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10492
(78 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/38 (97%), Positives = 37/38 (97%)
Query: 1 MFSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
MFSPGP RPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ
Sbjct: 1632 MFSPGPTRPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 1669
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/32 (96%), Positives = 32/32 (100%)
Query: 47 SRPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
+RPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ
Sbjct: 1638 TRPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 1669
>sp|Q9DDD5|NBEA_CHICK Neurobeachin (Fragment) OS=Gallus gallus GN=NBEA PE=2 SV=1
Length = 793
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 2 FSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
FSPGP FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 418 FSPGPRTNMFRIPEFKWSPMHQRLLTDLLFALETDVH 454
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 51 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 427 FRIPEFKWSPMHQRLLTDLLFALETDVH 454
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 2 FSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
FSPGP FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 1320 FSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVH 1356
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 51 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 1329 FRIPEFKWSPMHQRLLTDLLFALETDVH 1356
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 31/37 (83%)
Query: 2 FSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
FSPGP FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 1310 FSPGPRTTMFRIPEFKWSPMHQRLLTDLLFALETDVH 1346
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 26/28 (92%)
Query: 51 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
FRIPEFKWS +HQRLL+D+LF+LETD+
Sbjct: 1319 FRIPEFKWSPMHQRLLTDLLFALETDVH 1346
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 11 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
FRIPEFKWS +HQRLL+D+LFS+ETDIQ
Sbjct: 1301 FRIPEFKWSQMHQRLLTDLLFSIETDIQ 1328
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 51 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
FRIPEFKWS +HQRLL+D+LFS+ETDIQ
Sbjct: 1301 FRIPEFKWSQMHQRLLTDLLFSIETDIQ 1328
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 11 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 38
FRIPEF WS +HQRLL+D+LFS+ETDIQ
Sbjct: 1304 FRIPEFNWSQMHQRLLTDLLFSIETDIQ 1331
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 26/28 (92%)
Query: 51 FRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
FRIPEF WS +HQRLL+D+LFS+ETDIQ
Sbjct: 1304 FRIPEFNWSQMHQRLLTDLLFSIETDIQ 1331
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 9 PPFRIPEFKWSYIHQRLLSDVLFSLETDIQEY 40
P +R PEF WS +H RLL+D+L +E ++E+
Sbjct: 1064 PVYRAPEFAWSEVHIRLLADLLSGIERTVEEW 1095
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 49 PPFRIPEFKWSYIHQRLLSDVLFSLETDIQ 78
P +R PEF WS +H RLL+D+L +E ++
Sbjct: 1064 PVYRAPEFAWSEVHIRLLADLLSGIERTVE 1093
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2
SV=3
Length = 2507
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 9 PPFRIPEFKWSYIHQRLLSDVLFSLETDIQEY 40
P +R PEF WS +H RLL+D+L +E + E+
Sbjct: 1058 PIYRAPEFAWSDVHVRLLADLLSGIERVVDEW 1089
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 49 PPFRIPEFKWSYIHQRLLSDVLFSLE 74
P +R PEF WS +H RLL+D+L +E
Sbjct: 1058 PIYRAPEFAWSDVHVRLLADLLSGIE 1083
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,120,005
Number of Sequences: 539616
Number of extensions: 1104910
Number of successful extensions: 3090
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3072
Number of HSP's gapped (non-prelim): 18
length of query: 78
length of database: 191,569,459
effective HSP length: 49
effective length of query: 29
effective length of database: 165,128,275
effective search space: 4788719975
effective search space used: 4788719975
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)