Query psy10492
Match_columns 78
No_of_seqs 36 out of 38
Neff 3.0
Searched_HMMs 46136
Date Fri Aug 16 19:33:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10492.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10492hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03384 early DNA-binding pro 68.5 1.7 3.8E-05 36.3 0.2 16 8-23 410-425 (445)
2 COG4106 Tam Trans-aconitate me 55.1 4.2 9.2E-05 32.0 0.2 41 33-74 80-120 (257)
3 PF03728 Viral_DNA_Zn_bi: Vira 52.4 2.8 6.2E-05 29.0 -1.1 15 9-23 102-116 (126)
4 PHA03384 early DNA-binding pro 51.9 12 0.00027 31.4 2.4 41 15-62 384-424 (445)
5 PF11652 DUF3259: Protein of u 45.0 21 0.00045 24.1 2.2 18 19-36 28-45 (84)
6 PF14489 QueF: QueF-like prote 44.9 24 0.00052 23.0 2.5 24 51-74 29-52 (80)
7 COG5414 TATA-binding protein-a 42.4 28 0.00061 28.8 3.0 29 20-48 333-361 (392)
8 PF11237 DUF3038: Protein of u 41.3 71 0.0015 23.5 4.7 52 23-74 107-158 (171)
9 PF13267 DUF4058: Protein of u 36.7 31 0.00068 27.0 2.4 13 57-69 17-29 (254)
10 PF08919 F_actin_bind: F-actin 34.3 45 0.00098 22.9 2.6 38 27-74 65-102 (110)
11 PF06799 DUF1230: Protein of u 34.2 15 0.00031 26.6 0.2 19 17-35 86-104 (144)
12 COG5414 TATA-binding protein-a 31.1 27 0.00058 28.9 1.2 20 59-78 332-351 (392)
13 TIGR03139 QueF-II 7-cyano-7-de 30.5 54 0.0012 22.7 2.5 24 51-74 65-88 (115)
14 PF08625 Utp13: Utp13 specific 30.0 38 0.00082 23.6 1.7 52 23-74 30-95 (141)
15 PF13267 DUF4058: Protein of u 29.7 48 0.001 26.0 2.4 21 12-33 13-33 (254)
16 PF04538 BEX: Brain expressed 28.6 20 0.00044 24.2 0.1 20 12-32 47-68 (100)
17 PF15336 Auts2: Autism suscept 28.4 29 0.00064 26.7 1.0 15 17-31 4-18 (212)
18 cd07643 I-BAR_IMD_MIM Inverse 26.2 1E+02 0.0022 24.0 3.5 29 15-43 84-112 (231)
19 PF07664 FeoB_C: Ferrous iron 26.0 27 0.00058 20.4 0.3 8 9-16 37-44 (54)
20 PF08967 DUF1884: Domain of un 22.9 55 0.0012 22.1 1.4 32 25-56 6-37 (85)
21 smart00555 GIT Helical motif i 20.1 1.3E+02 0.0027 16.4 2.3 16 21-36 12-27 (31)
22 PTZ00301 uridine kinase; Provi 20.1 3.3E+02 0.0072 19.6 5.1 47 20-66 140-199 (210)
No 1
>PHA03384 early DNA-binding protein E2A; Provisional
Probab=68.53 E-value=1.7 Score=36.29 Aligned_cols=16 Identities=63% Similarity=1.063 Sum_probs=13.6
Q ss_pred CCCcccCccchhHHHH
Q psy10492 8 RPPFRIPEFKWSYIHQ 23 (78)
Q Consensus 8 ~~~~RiPEF~Ws~~H~ 23 (78)
.|++.+|||+|+.-||
T Consensus 410 ~~~~~~PeFkW~~~~q 425 (445)
T PHA03384 410 PPPLVIPEFKWSPRYQ 425 (445)
T ss_pred CCcccCcceeecccce
Confidence 5789999999998765
No 2
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=55.13 E-value=4.2 Score=32.05 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhcCCCCCCeecCCccHHHHHHHHHHHHHHhhh
Q psy10492 33 LETDIQEYLKKVNNSRPPFRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 33 iE~~i~~w~~~stkt~~dFRnpefnwsfVH~rll~dll~~ie 74 (78)
.|.|++.|+-. -++...|-|..+.|..=|-+||.-|++.|.
T Consensus 80 ~~aDl~~w~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~ 120 (257)
T COG4106 80 EEADLRTWKPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLA 120 (257)
T ss_pred ecccHhhcCCC-CccchhhhhhhhhhccccHHHHHHHHHhhC
Confidence 47899999875 566777999999999999999999988764
No 3
>PF03728 Viral_DNA_Zn_bi: Viral DNA-binding protein, zinc binding domain; InterPro: IPR005376 The adenovirus early E2A DNA-binding protein (Ad DBP) is a multifunctional protein required, amongst other things, for DNA replication and transcription control. It binds to single- and double-stranded DNA, as well as to RNA, in a sequence-independent manner. This signature represents the zinc binding domain of the viral DNA- binding protein, which is active in DNA replication. The zinc atoms appear to be required for the stability of the protein fold rather than being involved in direct contacts with the DNA, the protein contains two zinc atoms in different, novel coordinations. Two copies of this domain are found at the C terminus of many members of the family [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1ADU_A 1ADV_B 2WB0_X 2WAZ_X 1ANV_A.
Probab=52.39 E-value=2.8 Score=29.04 Aligned_cols=15 Identities=47% Similarity=0.926 Sum_probs=10.6
Q ss_pred CCcccCccchhHHHH
Q psy10492 9 PPFRIPEFKWSYIHQ 23 (78)
Q Consensus 9 ~~~RiPEF~Ws~~H~ 23 (78)
|+..+|||+|+..++
T Consensus 102 ~~~~kp~f~~~~~~~ 116 (126)
T PF03728_consen 102 PPLVKPEFAWQQRYQ 116 (126)
T ss_dssp ---HHHCHHHHHHHC
T ss_pred ccccchHhHhChHHH
Confidence 678999999998764
No 4
>PHA03384 early DNA-binding protein E2A; Provisional
Probab=51.89 E-value=12 Score=31.36 Aligned_cols=41 Identities=39% Similarity=0.576 Sum_probs=33.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeecCCccHHHHH
Q psy10492 15 EFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYIH 62 (78)
Q Consensus 15 EF~Ws~~H~rlL~dll~~iE~~i~~w~~~stkt~~dFRnpefnwsfVH 62 (78)
+||=|. .||+.++--.=+.|..- ..+.+.+.+|||+|..-+
T Consensus 384 dfKISa------~Dl~~alqlar~~W~~~-~~~~~~~~~PeFkW~~~~ 424 (445)
T PHA03384 384 DFKISA------PDLLGALQLARQLWQEN-MGEPPPLVIPEFKWSPRY 424 (445)
T ss_pred ceeecc------HHHHHHHHHHHHHHHHh-cCCCCcccCcceeecccc
Confidence 566554 59999999999999987 445888999999998654
No 5
>PF11652 DUF3259: Protein of unknown function (DUF3259); InterPro: IPR024280 This entry describes a eukaryotic protein family of unknown function designated FAM167.
Probab=45.03 E-value=21 Score=24.09 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy10492 19 SYIHQRLLSDVLFSLETD 36 (78)
Q Consensus 19 s~~H~rlL~dll~~iE~~ 36 (78)
|+-|+++|.|.=++||..
T Consensus 28 C~~H~~mLdda~~elEe~ 45 (84)
T PF11652_consen 28 CHEHREMLDDATYELEEE 45 (84)
T ss_pred HHHHHHHHHHhHhhhhhh
Confidence 788999999999999965
No 6
>PF14489 QueF: QueF-like protein; PDB: 3UXV_C 3RJB_A 3BP1_D 3RZP_B 3RJ4_A 3UXJ_C 3S19_D 3RZQ_B.
Probab=44.86 E-value=24 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.3
Q ss_pred eecCCccHHHHHHHHHHHHHHhhh
Q psy10492 51 FRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 51 FRnpefnwsfVH~rll~dll~~ie 74 (78)
|||...-+=.+-||+++||..+++
T Consensus 29 fRn~~~fhE~~v~~I~~Dl~~~~~ 52 (80)
T PF14489_consen 29 FRNHGIFHEQCVNRIFDDLVAALK 52 (80)
T ss_dssp TTTSBE-HHHHHHHHHHHHHHHH-
T ss_pred HhhcCCcHHHHHHHHHHHHHHhCC
Confidence 889999999999999999998775
No 7
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=42.45 E-value=28 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy10492 20 YIHQRLLSDVLFSLETDIQEYLKKVNNSR 48 (78)
Q Consensus 20 ~~H~rlL~dll~~iE~~i~~w~~~stkt~ 48 (78)
.-|-+||+|-|..||+.|+.=|.+.++.+
T Consensus 333 ~r~~~Ll~d~lnELE~~i~~~r~~~~~At 361 (392)
T COG5414 333 ERHTELLADELNELEKGIEEKRRQMESAT 361 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45899999999999999999888765544
No 8
>PF11237 DUF3038: Protein of unknown function (DUF3038); InterPro: IPR021399 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=41.31 E-value=71 Score=23.52 Aligned_cols=52 Identities=23% Similarity=0.224 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCeecCCccHHHHHHHHHHHHHHhhh
Q psy10492 23 QRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 23 ~rlL~dll~~iE~~i~~w~~~stkt~~dFRnpefnwsfVH~rll~dll~~ie 74 (78)
.-+|+|.+...=.-+++=-+.....+..|-++++.-...+..||.||+|+--
T Consensus 107 ~~ll~~Yl~rF~~~~~~Rmn~~r~~v~~~L~~~~~l~~La~kLL~~LlF~sg 158 (171)
T PF11237_consen 107 NQLLGDYLDRFRSLYQERMNPRRSAVKRLLNSPEKLNELALKLLIDLLFCSG 158 (171)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchhhhhccCChhhhHHHHHHHHHHHHhhcC
Confidence 3455666655555555544444445555667788999999999999999854
No 9
>PF13267 DUF4058: Protein of unknown function (DUF4058)
Probab=36.68 E-value=31 Score=26.96 Aligned_cols=13 Identities=31% Similarity=0.841 Sum_probs=6.7
Q ss_pred cHHHHHHHHHHHH
Q psy10492 57 KWSYIHQRLLSDV 69 (78)
Q Consensus 57 nwsfVH~rll~dl 69 (78)
=|+.||+||.+-+
T Consensus 17 lWpdVH~rLI~ai 29 (254)
T PF13267_consen 17 LWPDVHNRLIVAI 29 (254)
T ss_pred hHHHHHHHHHHHH
Confidence 3555555555443
No 10
>PF08919 F_actin_bind: F-actin binding; InterPro: IPR015015 The F-actin binding domain forms a compact bundle of four antiparallel alpha-helices, which are arranged in a left-handed topology. Binding of F-actin to the F-actin binding domain may result in cytoplasmic retention and subcellular distribution of the protein, as well as possible inhibition of protein function []. ; GO: 0004715 non-membrane spanning protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1ZZP_A 2KK1_A.
Probab=34.31 E-value=45 Score=22.86 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCeecCCccHHHHHHHHHHHHHHhhh
Q psy10492 27 SDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 27 ~dll~~iE~~i~~w~~~stkt~~dFRnpefnwsfVH~rll~dll~~ie 74 (78)
.|++..+|.-..+.|..++++- +...++++.||..+|-
T Consensus 65 REllsrLE~~~rqLr~~~s~~~----------~~~~~~l~~~l~~~ik 102 (110)
T PF08919_consen 65 RELLSRLESQSRQLRSCGSSNS----------SPENQRLVSDLQNTIK 102 (110)
T ss_dssp HHHHHHHHHHHHHHCHSSSSSS----------STT--THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCC----------CcccHHHHHHHHHHHH
Confidence 5899999999999999765543 4456888899888763
No 11
>PF06799 DUF1230: Protein of unknown function (DUF1230); InterPro: IPR009631 This family represents Ycf36, which is found in plants, encoded in the genomes of algal chloroplasts and in cyanobacteria. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=34.24 E-value=15 Score=26.60 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=15.0
Q ss_pred chhHHHHHHHHHHHHHHHH
Q psy10492 17 KWSYIHQRLLSDVLFSLET 35 (78)
Q Consensus 17 ~Ws~~H~rlL~dll~~iE~ 35 (78)
-|+||+.||++.-.+-=|+
T Consensus 86 GW~YV~~RL~s~tV~YEES 104 (144)
T PF06799_consen 86 GWSYVGDRLLSATVEYEES 104 (144)
T ss_pred ChHHHHhhhccCccccccc
Confidence 5999999999987765554
No 12
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=31.08 E-value=27 Score=28.93 Aligned_cols=20 Identities=40% Similarity=0.479 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhhhccC
Q psy10492 59 SYIHQRLLSDVLFSLETDIQ 78 (78)
Q Consensus 59 sfVH~rll~dll~~ie~di~ 78 (78)
.--|++||.|-|..||+.|+
T Consensus 332 n~r~~~Ll~d~lnELE~~i~ 351 (392)
T COG5414 332 NERHTELLADELNELEKGIE 351 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34699999999999998774
No 13
>TIGR03139 QueF-II 7-cyano-7-deazaguanine reductase. The enzymatic step represents the first point at which the biosynthesis of queuosine in bacteria and eukaryotes is distinguished from the biosynthesis of archaeosine in archaea.
Probab=30.47 E-value=54 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.7
Q ss_pred eecCCccHHHHHHHHHHHHHHhhh
Q psy10492 51 FRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 51 FRnpefnwsfVH~rll~dll~~ie 74 (78)
|||....+-.+.+|+++||..+++
T Consensus 65 frn~~~~hE~~~~~I~~DL~~~~~ 88 (115)
T TIGR03139 65 FRNHGIFHENVTNTILDDLVKLLQ 88 (115)
T ss_pred hcCCCchHHHHHHHHHHHHHHhcC
Confidence 888888999999999999998875
No 14
>PF08625 Utp13: Utp13 specific WD40 associated domain; InterPro: IPR013934 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. Utp13 is a nucleolar protein and component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA []. Upt13 is also a component of the Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome []. Components of the Pwp2 complex are: Utp1 (Pwp2), Utp6, Utp12 (Dip2), Utp13, Utp18, and Utp21. The relationship between the Pwp2 complex and the t-Utps complex [] that also associates with the 5' end of nascent pre-18S rRNA is unclear. ; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=30.04 E-value=38 Score=23.58 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=34.4
Q ss_pred HHHHHHHH-----------HHHHHHHHHHHhhcCCCCCCee---cCCccHHHHHHHHHHHHHHhhh
Q psy10492 23 QRLLSDVL-----------FSLETDIQEYLKKVNNSRPPFR---IPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 23 ~rlL~dll-----------~~iE~~i~~w~~~stkt~~dFR---npefnwsfVH~rll~dll~~ie 74 (78)
+.++.+++ ..|+..|..++..--.....|+ |-|-+.+.|.|++|.-+|.++.
T Consensus 30 l~i~~~~~~~~~~~~~~g~~~l~~~i~~L~~~~l~~LL~~ir~WNTNsr~~~vAQ~vL~~il~~~~ 95 (141)
T PF08625_consen 30 LKILKDLLETEEDEDSIGSEELDEVIKKLDDEQLEKLLRFIRDWNTNSRTSHVAQRVLNAILKSHP 95 (141)
T ss_pred HHHHHHHHhcccccccchHHHHHHHHHhcCHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCC
Confidence 34566666 5566666666655333333332 6788899999999998887654
No 15
>PF13267 DUF4058: Protein of unknown function (DUF4058)
Probab=29.68 E-value=48 Score=25.95 Aligned_cols=21 Identities=33% Similarity=0.729 Sum_probs=15.9
Q ss_pred ccCccchhHHHHHHHHHHHHHH
Q psy10492 12 RIPEFKWSYIHQRLLSDVLFSL 33 (78)
Q Consensus 12 RiPEF~Ws~~H~rlL~dll~~i 33 (78)
-.|+| |+.+|.||.+-+-..|
T Consensus 13 E~P~l-WpdVH~rLI~aiad~L 33 (254)
T PF13267_consen 13 EHPDL-WPDVHNRLIVAIADSL 33 (254)
T ss_pred cCcch-HHHHHHHHHHHHHHHh
Confidence 45665 9999999987665554
No 16
>PF04538 BEX: Brain expressed X-linked like family ; InterPro: IPR021156 This entry includes the human p75NTR-associated cell death executor (Nerve growth factor receptor associated protein 1), which may be a signalling adaptor molecule involved in p75NTR-apoptosis induced by nerve growth factor. It may be important in neurogenetic diseases. The proteins are also annotated as Brain expressed X-linked like (BEX), which is a signalling adapter molecule involved in p75NTR-mediated apoptosis induced by NGF, which plays an role in zinc-triggered neuronal death.
Probab=28.59 E-value=20 Score=24.15 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=15.6
Q ss_pred ccCccchhHHHHHHHH--HHHHH
Q psy10492 12 RIPEFKWSYIHQRLLS--DVLFS 32 (78)
Q Consensus 12 RiPEF~Ws~~H~rlL~--dll~~ 32 (78)
-+|+|+| .||.|.|+ |.+-+
T Consensus 47 ~~~~fre-di~~Rh~~~eem~r~ 68 (100)
T PF04538_consen 47 PLKEFRE-DIPNRHLSNEEMIRE 68 (100)
T ss_pred ccHhhhh-hhhhccCCHHHHhHh
Confidence 3689998 58999998 77544
No 17
>PF15336 Auts2: Autism susceptibility gene 2 protein
Probab=28.38 E-value=29 Score=26.67 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHH
Q psy10492 17 KWSYIHQRLLSDVLF 31 (78)
Q Consensus 17 ~Ws~~H~rlL~dll~ 31 (78)
|||.||.|+-=-++-
T Consensus 4 KWcAmHV~iAW~Iyh 18 (212)
T PF15336_consen 4 KWCAMHVRIAWQIYH 18 (212)
T ss_pred chhhHHHHHHHHHHH
Confidence 799999998665554
No 18
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=26.16 E-value=1e+02 Score=24.00 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=24.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy10492 15 EFKWSYIHQRLLSDVLFSLETDIQEYLKK 43 (78)
Q Consensus 15 EF~Ws~~H~rlL~dll~~iE~~i~~w~~~ 43 (78)
|=+=-..|..|+..|+-.+|..+++|+..
T Consensus 84 E~~lk~f~~~L~~~lI~pLe~k~E~wkk~ 112 (231)
T cd07643 84 ETKLKQFTSALMDCLVNPLQEKIEEWKKV 112 (231)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33445678899999999999999999875
No 19
>PF07664 FeoB_C: Ferrous iron transport protein B C terminus; InterPro: IPR011640 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions []. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus has been previously erroneously described as being ATP-binding []. Recent work shows that it is similar to eukaryotic G-proteins and that it is a GTPase [].; GO: 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane
Probab=25.97 E-value=27 Score=20.35 Aligned_cols=8 Identities=50% Similarity=1.559 Sum_probs=6.2
Q ss_pred CCcccCcc
Q psy10492 9 PPFRIPEF 16 (78)
Q Consensus 9 ~~~RiPEF 16 (78)
|+||.|-+
T Consensus 37 P~Yr~P~~ 44 (54)
T PF07664_consen 37 PPYRMPRL 44 (54)
T ss_pred CCCCCCCH
Confidence 57999976
No 20
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.86 E-value=55 Score=22.12 Aligned_cols=32 Identities=25% Similarity=0.185 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCeecCCc
Q psy10492 25 LLSDVLFSLETDIQEYLKKVNNSRPPFRIPEF 56 (78)
Q Consensus 25 lL~dll~~iE~~i~~w~~~stkt~~dFRnpef 56 (78)
-|..+|+.||+.+.+.|.++-.|-....-|+|
T Consensus 6 ~li~il~~ie~~inELk~dG~ePDivL~G~ef 37 (85)
T PF08967_consen 6 DLIRILELIEEKINELKEDGFEPDIVLVGPEF 37 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHTT----EEEE-HHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCCEEEEcHHH
Confidence 46778999999999999998877777766665
No 21
>smart00555 GIT Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins. Helical motif in the GIT family of ADP-ribosylation factor GTPase-activating proteins, and in yeast Spa2p and Sph1p (CPP; unpublished results). In p95-APP1 the N-terminal GIT motif might be involved in binding PIX.
Probab=20.08 E-value=1.3e+02 Score=16.37 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10492 21 IHQRLLSDVLFSLETD 36 (78)
Q Consensus 21 ~H~rlL~dll~~iE~~ 36 (78)
-++-|++|++..|++-
T Consensus 12 ~F~~L~~Dv~~El~RR 27 (31)
T smart00555 12 QFQKLLTDLNDELKRR 27 (31)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567788888887753
No 22
>PTZ00301 uridine kinase; Provisional
Probab=20.06 E-value=3.3e+02 Score=19.64 Aligned_cols=47 Identities=19% Similarity=0.279 Sum_probs=35.4
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHhhc----------CCCCCCeecCCccHHHHHHHHH
Q psy10492 20 YIHQRLLSDVL---FSLETDIQEYLKKV----------NNSRPPFRIPEFKWSYIHQRLL 66 (78)
Q Consensus 20 ~~H~rlL~dll---~~iE~~i~~w~~~s----------tkt~~dFRnpefnwsfVH~rll 66 (78)
....|+..|+- .++|..++.|.+.+ ++...|.++|+..--.|+..+|
T Consensus 140 ~~~Rr~~Rd~~~rG~~~e~v~~~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~ 199 (210)
T PTZ00301 140 CLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVL 199 (210)
T ss_pred HHHHHHhhhHHhcCCCHHHHHHHHHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHH
Confidence 35567788887 57888899999863 6677888888777666776666
Done!