Query psy10492
Match_columns 78
No_of_seqs 36 out of 38
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 19:33:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10492.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10492hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wb0_X E2A DNA-binding protein 76.6 0.44 1.5E-05 37.6 -0.4 16 8-23 321-336 (356)
2 2bec_B Sodium/hydrogen exchang 60.0 7.8 0.00027 21.6 2.6 19 19-37 18-36 (43)
3 2wb0_X E2A DNA-binding protein 45.3 16 0.00055 28.8 3.2 40 15-61 295-334 (356)
4 2pk8_A Uncharacterized protein 30.1 29 0.00099 23.2 2.1 31 26-56 15-45 (103)
5 4f8b_A NADPH-dependent 7-cyano 26.9 42 0.0015 23.8 2.6 24 51-74 90-113 (165)
6 2kig_A Inositol polyphosphate 19.1 47 0.0016 23.6 1.6 16 4-20 135-150 (161)
7 3kin_B Kinesin heavy chain; mo 17.2 98 0.0034 19.8 2.7 19 24-42 99-117 (117)
8 4hpq_A ATG31, KLTH0C07942P; au 16.8 1.3E+02 0.0044 18.8 3.0 33 4-36 13-46 (69)
9 1sn9_A BBAT, tetrameric beta-B 16.4 1.1E+02 0.0036 15.9 2.1 17 10-26 1-17 (26)
10 3gcg_B MAP, L0028 (mitochondri 14.5 79 0.0027 22.6 1.8 23 21-43 19-46 (172)
No 1
>2wb0_X E2A DNA-binding protein; ssDNA binding protein; 1.95A {Human adenovirus 5} PDB: 1adv_A 1adu_A 1anv_A 1adt_A 2waz_X
Probab=76.56 E-value=0.44 Score=37.63 Aligned_cols=16 Identities=56% Similarity=1.034 Sum_probs=13.5
Q ss_pred CCCcccCccchhHHHH
Q psy10492 8 RPPFRIPEFKWSYIHQ 23 (78)
Q Consensus 8 ~~~~RiPEF~Ws~~H~ 23 (78)
.|+..+|||+|+.-||
T Consensus 321 ~~~l~~PeFkW~~~~q 336 (356)
T 2wb0_X 321 LPRMVVPEFKWSTKHQ 336 (356)
T ss_dssp CCCCCCCBCCCCGGGS
T ss_pred CCCccccceeeccccc
Confidence 6789999999997654
No 2
>2bec_B Sodium/hydrogen exchanger 1; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens} PDB: 2e30_B
Probab=60.03 E-value=7.8 Score=21.58 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10492 19 SYIHQRLLSDVLFSLETDI 37 (78)
Q Consensus 19 s~~H~rlL~dll~~iE~~i 37 (78)
..+|.|++.-++.+||.-.
T Consensus 18 e~ih~~~~dhlmaGiEdi~ 36 (43)
T 2bec_B 18 EEIHTQFLDHLLTGIEDIC 36 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhchHhhc
Confidence 3678888888888888644
No 3
>2wb0_X E2A DNA-binding protein; ssDNA binding protein; 1.95A {Human adenovirus 5} PDB: 1adv_A 1adu_A 1anv_A 1adt_A 2waz_X
Probab=45.27 E-value=16 Score=28.80 Aligned_cols=40 Identities=33% Similarity=0.496 Sum_probs=32.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeecCCccHHHH
Q psy10492 15 EFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYI 61 (78)
Q Consensus 15 EF~Ws~~H~rlL~dll~~iE~~i~~w~~~stkt~~dFRnpefnwsfV 61 (78)
+||=|. -||+.++--.=+-|..-- ...+..++|||+|..-
T Consensus 295 dfKISa------~Dl~~Alqlar~lw~~~~-~~~~~l~~PeFkW~~~ 334 (356)
T 2wb0_X 295 DFKISA------PDLLNALVMVRSLWSENF-TELPRMVVPEFKWSTK 334 (356)
T ss_dssp CCEEEH------HHHHHHHHHHHHHHHTTC-SSCCCCCCCBCCCCGG
T ss_pred ceEecc------HHHHHHHHHHHHHHHHhc-CCCCCccccceeeccc
Confidence 466664 599999999999999874 4488899999999754
No 4
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=30.14 E-value=29 Score=23.22 Aligned_cols=31 Identities=19% Similarity=0.020 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCeecCCc
Q psy10492 26 LSDVLFSLETDIQEYLKKVNNSRPPFRIPEF 56 (78)
Q Consensus 26 L~dll~~iE~~i~~w~~~stkt~~dFRnpef 56 (78)
|..+|+.||+.+.+.|.++-+|-....-|||
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL~G~ea 45 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIILFGREA 45 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEcHHH
Confidence 5678899999999999998888888887776
No 5
>4f8b_A NADPH-dependent 7-cyano-7-deazaguanine reductase; beta barrel, protein thioimide complex, pterin binding fold, fold; HET: GD1 PE4; 2.50A {Bacillus subtilis subsp} PDB: 4fgc_A*
Probab=26.90 E-value=42 Score=23.84 Aligned_cols=24 Identities=13% Similarity=0.099 Sum_probs=22.0
Q ss_pred eecCCccHHHHHHHHHHHHHHhhh
Q psy10492 51 FRIPEFKWSYIHQRLLSDVLFSLE 74 (78)
Q Consensus 51 FRnpefnwsfVH~rll~dll~~ie 74 (78)
|||...-+=.+.+|+++||..+++
T Consensus 90 FRnh~~FHE~cvn~I~~DL~~~~~ 113 (165)
T 4f8b_A 90 FRNHGDFHEDCMNIIMNDLIELMD 113 (165)
T ss_dssp TTTCBCCHHHHHHHHHHHHHHHHC
T ss_pred HhcCCCcHHHHHHHHHHHHHHhhC
Confidence 999999999999999999998764
No 6
>2kig_A Inositol polyphosphate 5-phosphatase II isoform; OCRL, INPP5B, clathrin, endocytosis, hydrolase; NMR {Mus musculus}
Probab=19.13 E-value=47 Score=23.65 Aligned_cols=16 Identities=50% Similarity=0.947 Sum_probs=11.5
Q ss_pred CCCCCCCcccCccchhH
Q psy10492 4 PGPARPPFRIPEFKWSY 20 (78)
Q Consensus 4 p~p~~~~~RiPEF~Ws~ 20 (78)
||+ +|+-+-|||.|.-
T Consensus 135 PG~-sp~tpdp~f~WLS 150 (161)
T 2kig_A 135 PGF-DPETRDPEFEWLS 150 (161)
T ss_dssp TTT-CTTCCCCCCTTGG
T ss_pred CCC-CCCCCCcccchhh
Confidence 454 3667889999963
No 7
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=17.25 E-value=98 Score=19.79 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy10492 24 RLLSDVLFSLETDIQEYLK 42 (78)
Q Consensus 24 rlL~dll~~iE~~i~~w~~ 42 (78)
+-|.+.+..+|..+..||+
T Consensus 99 ~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 99 KALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhC
Confidence 4577888999999999984
No 8
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=16.81 E-value=1.3e+02 Score=18.77 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=25.8
Q ss_pred CCCCCCCcc-cCccchhHHHHHHHHHHHHHHHHH
Q psy10492 4 PGPARPPFR-IPEFKWSYIHQRLLSDVLFSLETD 36 (78)
Q Consensus 4 p~p~~~~~R-iPEF~Ws~~H~rlL~dll~~iE~~ 36 (78)
||++...|. -|-|.|..---+.|=++++.++.-
T Consensus 13 Pg~Rp~gFVDPPp~~Wna~KD~~LW~IIS~~d~~ 46 (69)
T 4hpq_A 13 AGRARNGFVDPLKFYWDLERDRSLWSSVXXXXXX 46 (69)
T ss_dssp SSCCCSCCCCCCCCCCHHHHHHHHHHHCCHHHHH
T ss_pred cCCCCCCCCCCCCCccChHHHHHHHHHHHhhhcc
Confidence 666643443 578999999999999999988763
No 9
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=16.43 E-value=1.1e+02 Score=15.86 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=10.7
Q ss_pred CcccCccchhHHHHHHH
Q psy10492 10 PFRIPEFKWSYIHQRLL 26 (78)
Q Consensus 10 ~~RiPEF~Ws~~H~rlL 26 (78)
.||||.+....--..||
T Consensus 1 ~yripsydfadelakll 17 (26)
T 1sn9_A 1 XYRIPSYDFADELAKLL 17 (26)
T ss_dssp -CCBTTBCHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHH
Confidence 38999888765444444
No 10
>3gcg_B MAP, L0028 (mitochondria associated protein); CDC42, complex, alternative splicing, cell membrane, GTP-binding, lipoprotein, membrane; 2.30A {Escherichia coli}
Probab=14.55 E-value=79 Score=22.63 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHhh
Q psy10492 21 IHQRLLSDVLFSLE-----TDIQEYLKK 43 (78)
Q Consensus 21 ~H~rlL~dll~~iE-----~~i~~w~~~ 43 (78)
=|.+|-+++|.++- .|++.|+++
T Consensus 19 n~~kl~~~iL~~V~~qs~~kd~~~W~kq 46 (172)
T 3gcg_B 19 NHGKLTNQLLQAVAKQTRNGDTQQWFQQ 46 (172)
T ss_dssp CHHHHHHHHHHHHHTSSSSCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccchHHHHHHh
Confidence 37889999998885 489999996
Done!