RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10492
         (78 letters)



>2wb0_X E2A DNA-binding protein; ssDNA binding protein; 1.95A {Human
           adenovirus 5} PDB: 1adv_A 1adu_A 1anv_A 1adt_A 2waz_X
          Length = 356

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 1   MFSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSY 60
           ++    A+      +FK S        D+L +L   ++    +     P   +PEFKWS 
Sbjct: 281 VYRNSRAQGGGPNCDFKISAP------DLLNALVM-VRSLWSENFTELPRMVVPEFKWST 333

Query: 61  IHQ 63
            HQ
Sbjct: 334 KHQ 336


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.3 bits (73), Expect = 0.009
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 7   ARPPF--RIPEFKWSYI------HQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEF 56
           +R PF  R  +F   ++      H  LL      +  D+ +    V+ +    +IP +
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK--NNVSFNAKDIQIPVY 460


>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
           ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
           ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
          Length = 773

 Score = 26.1 bits (58), Expect = 1.0
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 8/33 (24%)

Query: 22  HQRLLS-DVLFSLETDIQEYLKKVNNSRPPFRI 53
           H+R L+ D+L  L       LK+V   RP  +I
Sbjct: 218 HERTLATDILMGL-------LKQVVKRRPDLKI 243


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl RED
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 1688

 Score = 24.8 bits (54), Expect = 3.1
 Identities = 3/16 (18%), Positives = 4/16 (25%)

Query: 1    MFSPGPARPPFRIPEF 16
             F   P +       F
Sbjct: 1065 RFKDEPVQNDILQESF 1080


>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology,
          protein structure initiati midwest center for
          structural genomics; 1.90A {Klebsiella pneumoniae
          subsp} PDB: 3qwt_A
          Length = 382

 Score = 23.9 bits (51), Expect = 8.0
 Identities = 6/39 (15%), Positives = 19/39 (48%)

Query: 24 RLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSYIH 62
          R ++  L +++ +  ++L ++++ R         W + H
Sbjct: 32 RNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTH 70


>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription,
           SPRY domain, prote binding, histone methylation, RBBP5,
           DPY-30, nuclear; 2.07A {Homo sapiens}
          Length = 213

 Score = 23.7 bits (51), Expect = 8.2
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 10/38 (26%)

Query: 9   PPFRIP----------EFKWSYIHQRLLSDVLFSLETD 36
           P F+ P          +  W  + +  L+DVL+ +ET+
Sbjct: 176 PCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETE 213



 Score = 23.7 bits (51), Expect = 8.2
 Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 10/38 (26%)

Query: 49  PPFRIP----------EFKWSYIHQRLLSDVLFSLETD 76
           P F+ P          +  W  + +  L+DVL+ +ET+
Sbjct: 176 PCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYHVETE 213


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,229,128
Number of extensions: 56753
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 13
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.7 bits)