RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10492
         (78 letters)



>d1adta3 g.51.1.1 (A:386-529) Second Zn-domain of early E2A
           DNA-binding protein, ADDBP {Human adenovirus type 5
           [TaxId: 28285]}
          Length = 144

 Score = 31.3 bits (71), Expect = 0.005
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 1   MFSPGPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWSY 60
           ++    A+      +FK S        D+L +L   ++    +     P   +P+FKWS 
Sbjct: 69  VYRNSRAQGGGPNCDFKISAP------DLLNALVM-VRSLWSENFTELPRMVVPQFKWST 121

Query: 61  IHQ 63
            HQ
Sbjct: 122 KHQ 124


>d1nu9c2 a.8.6.1 (C:146-281) Staphylocoagulase {Staphylococcus
          aureus [TaxId: 1280]}
          Length = 136

 Score = 24.8 bits (54), Expect = 1.1
 Identities = 11/55 (20%), Positives = 25/55 (45%), Gaps = 8/55 (14%)

Query: 5  GPARPPFRIPEFKWSYIHQRLLSDVLFSLETDIQEYLKKVNNSRPPFRIPEFKWS 59
          G    P RI        ++R+  +++  LE+ I+++  +   ++P   I  +  S
Sbjct: 52 GDEDKPHRI-------SNERIEKEMIKDLESIIEDFFIETGLNKPD-NITSYDSS 98


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 317

 Score = 23.9 bits (52), Expect = 2.3
 Identities = 10/53 (18%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 13  IPEFKWSYIHQR--LLSDVLFSLETDIQEYLK-KVNNSRPPFRIPEFKWSYIH 62
           +   +WSYI +R   ++ + +    +  E L+   +++    RI  F  +  +
Sbjct: 71  LGGREWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIFPDTIWN 123


>d1u7la_ e.57.1.1 (A:) Vacuolar ATP synthase subunit C {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 23.2 bits (50), Expect = 4.3
 Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 10 PFRIPEFKWSYIHQRL-LSDVLFSLETDIQEYLKKV 44
           F+IPEFK   +   +  S+ L  ++  I   + K+
Sbjct: 43 DFKIPEFKIGSLDTLIVESEELSKVDNQIGASIGKI 78


>d2viua_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
          strains [TaxId: 11320]}
          Length = 320

 Score = 23.2 bits (50), Expect = 4.4
 Identities = 2/12 (16%), Positives = 3/12 (25%)

Query: 13 IPEFKWSYIHQR 24
               W    +R
Sbjct: 71 FQNETWDLFVER 82



 Score = 23.2 bits (50), Expect = 4.4
 Identities = 2/12 (16%), Positives = 3/12 (25%)

Query: 53 IPEFKWSYIHQR 64
               W    +R
Sbjct: 71 FQNETWDLFVER 82


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 313,850
Number of extensions: 12416
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 10
Length of query: 78
Length of database: 2,407,596
Length adjustment: 45
Effective length of query: 33
Effective length of database: 1,789,746
Effective search space: 59061618
Effective search space used: 59061618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.0 bits)