BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10493
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3
Length = 3578
Score = 207 bits (528), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/158 (63%), Positives = 118/158 (74%), Gaps = 28/158 (17%)
Query: 63 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVL 122
TVQQH+IQNRGFL IS+MLQ+ SREHLTLEVL
Sbjct: 507 TVQQHMIQNRGFLVISFMLQRS----------------------------SREHLTLEVL 538
Query: 123 GSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTA 182
GSFL TK+LVTCL+ NS+LLLKQ LDH+LFNP LWI+ PA VQ+RLY+YL TEFL+DT
Sbjct: 539 GSFLNLTKYLVTCLSANSDLLLKQLLDHVLFNPALWIYTPANVQARLYSYLATEFLSDTQ 598
Query: 183 VYSNVRRVSTILQTMHTLKFYYWVVNPRLKTGVIPKGL 220
+YSNVRRVST+LQT+HTLK+YYWVVNPR K+G+IPKGL
Sbjct: 599 IYSNVRRVSTVLQTVHTLKYYYWVVNPRAKSGIIPKGL 636
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 31/32 (96%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEPP 38
++ ++AQFLSLA+VYFISVLMVSKYRDILEPP
Sbjct: 1866 EETKQAQFLSLAIVYFISVLMVSKYRDILEPP 1897
>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3
Length = 2946
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 88/158 (55%), Gaps = 30/158 (18%)
Query: 63 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVL 122
+Q+ ++ +GFL I Y+L+K SR H+T VL FL F K+ L LS
Sbjct: 540 AMQEQMLGGKGFLVIGYLLEKSSRVHITRAVLEQFLSFAKY-----LDGLS--------- 585
Query: 123 GSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTA 182
+ LLKQ DHILFNP +WIH PA VQ LY YL EF+
Sbjct: 586 ----------------HGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTAT 629
Query: 183 VYSNVRRVSTILQTMHTLKFYYWVVNPRLKTGVIPKGL 220
+Y+ +RRV T+LQ MHTLK+YYWV+NP +G+ PKGL
Sbjct: 630 IYTTIRRVGTVLQLMHTLKYYYWVINPADSSGITPKGL 667
Score = 57.4 bits (137), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEDCLSTVQ- 65
++AQFL+LAVVYFISVLMVSKYRDILEP R S P +N Q STV
Sbjct: 1555 DDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETTRTGSQP-GRNIRQEINSPTSTVVV 1613
Query: 66 ----QHIIQNRGFLA 76
H N GFLA
Sbjct: 1614 IPSIPHPSLNHGFLA 1628
>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1
Length = 2936
Score = 132 bits (332), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 88/158 (55%), Gaps = 30/158 (18%)
Query: 63 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVL 122
+Q+ ++ +GFL I Y+L+K SR H+T VL FL F K+ L LS
Sbjct: 530 AMQEQMLGGKGFLVIGYLLEKSSRVHITRAVLEQFLSFAKY-----LDGLS--------- 575
Query: 123 GSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTA 182
+ LLKQ DHILFNP +WIH PA VQ LY YL EF+
Sbjct: 576 ----------------HGAPLLKQLCDHILFNPAIWIHTPAKVQLSLYTYLSAEFIGTAT 619
Query: 183 VYSNVRRVSTILQTMHTLKFYYWVVNPRLKTGVIPKGL 220
+Y+ +RRV T+LQ MHTLK+YYWV+NP +G+ PKGL
Sbjct: 620 IYTTIRRVGTVLQLMHTLKYYYWVINPADSSGIAPKGL 657
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 31/42 (73%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPP 48
++AQFL+LAVVYFISVLMVSKYRDILEP R S P
Sbjct: 1545 DDSKQAQFLALAVVYFISVLMVSKYRDILEPQRETARTGSQP 1586
>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus
musculus GN=Lrba PE=1 SV=1
Length = 2856
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 85/158 (53%), Gaps = 30/158 (18%)
Query: 63 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVL 122
+Q+ ++ +GFL I Y L+K S+ H++ VL L F+K+L
Sbjct: 514 AMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQ-------------- 559
Query: 123 GSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTA 182
N LLKQ DHIL NP +WIH PA VQ LY YL TEF+
Sbjct: 560 ----------------NGMPLLKQLCDHILLNPAVWIHTPAKVQLMLYTYLSTEFIGTVN 603
Query: 183 VYSNVRRVSTILQTMHTLKFYYWVVNPRLKTGVIPKGL 220
+Y+ +RRV T+L MHTLK+YYW VNP+ ++G+ PKGL
Sbjct: 604 IYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGL 641
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEP 37
+ ++AQFL+LAVVYFISVLMVSKYRDILEP
Sbjct: 1524 EDSKQAQFLALAVVYFISVLMVSKYRDILEP 1554
>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo
sapiens GN=LRBA PE=1 SV=4
Length = 2863
Score = 122 bits (306), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 85/158 (53%), Gaps = 30/158 (18%)
Query: 63 TVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVL 122
+Q+ ++ +GFL I Y L+K S+ H++ VL L F+K+L
Sbjct: 514 AMQEQMLACKGFLVIGYSLEKSSKSHVSRAVLELCLAFSKYLSNLQ-------------- 559
Query: 123 GSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTA 182
N LLKQ DH+L NP +WIH PA VQ LY YL TEF+
Sbjct: 560 ----------------NGMPLLKQLCDHVLLNPAIWIHTPAKVQLMLYTYLSTEFIGTVN 603
Query: 183 VYSNVRRVSTILQTMHTLKFYYWVVNPRLKTGVIPKGL 220
+Y+ +RRV T+L MHTLK+YYW VNP+ ++G+ PKGL
Sbjct: 604 IYNTIRRVGTVLLIMHTLKYYYWAVNPQDRSGITPKGL 641
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/31 (80%), Positives = 29/31 (93%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEP 37
+ ++AQFL+LAVVYFISVLMVSKYRDILEP
Sbjct: 1524 EDSKQAQFLALAVVYFISVLMVSKYRDILEP 1554
>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2
PE=2 SV=3
Length = 2507
Score = 89.0 bits (219), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 104 LVTYMLQKLSREHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPA 163
+++ LQK S HL+++VL + K L+ C P LLK D+ILFNP LWI A
Sbjct: 625 IISSCLQKASPSHLSMKVLEQLIHIAKFLLRC--PAGGPLLKHLFDYILFNPKLWIRARP 682
Query: 164 PVQSRLYAYLGTEFLADTAVYSNVRRVSTILQTMHTLKFYYWVVNPR 210
VQ LY YL T+FLA+ +RRV T+++ HTLK +YW+ P+
Sbjct: 683 EVQVHLYQYLATDFLANNNFSQMLRRVPTVIEMCHTLKHFYWLALPQ 729
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 30/32 (93%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEPP 38
++ R+AQFL+L+V+Y +SVLMVS+YRDILEPP
Sbjct: 1276 EENRQAQFLALSVIYLVSVLMVSRYRDILEPP 1307
>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2
PE=3 SV=1
Length = 2531
Score = 87.4 bits (215), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 2/107 (1%)
Query: 104 LVTYMLQKLSREHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPA 163
+++ LQ+ S HL+++VL + K L+ C P LLK D+ILFNP LWI A
Sbjct: 632 IISSCLQEASPSHLSMKVLEQIIHIAKFLLRC--PAGGPLLKHLFDYILFNPKLWIRARP 689
Query: 164 PVQSRLYAYLGTEFLADTAVYSNVRRVSTILQTMHTLKFYYWVVNPR 210
VQ LY YL T+FLA+ +RRV T+++ HTLK +YW+ P+
Sbjct: 690 EVQVHLYQYLATDFLANNNFSQMLRRVPTVIEMCHTLKHFYWLALPQ 736
Score = 54.7 bits (130), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/32 (68%), Positives = 30/32 (93%)
Query: 7 QQQRKAQFLSLAVVYFISVLMVSKYRDILEPP 38
++ R+AQFL+L+V+Y +SVLMVS+YRDILEPP
Sbjct: 1282 EENRQAQFLALSVIYLVSVLMVSRYRDILEPP 1313
>sp|P0C6P0|BCL8_HUMAN Putative protein BCL8 OS=Homo sapiens GN=NBEAP1 PE=5 SV=1
Length = 100
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 113 SREHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILF-NPGLWIHAPAPVQSRLYA 171
SR H+T VL FL F K+L + LLKQ DHILF NP +WIH PA VQ LY
Sbjct: 7 SRVHITRPVLEQFLSFAKYLDG--LSHGVPLLKQLCDHILFINPAIWIHTPAKVQLSLYT 64
Query: 172 YLGTEFLADTAVYSNVRRVSTILQTMHTLK 201
YL EF+ +Y+ + R+ T+++ LK
Sbjct: 65 YLSAEFIGTATIYTTICRIGTVIKDNAHLK 94
>sp|Q9DDD5|NBEA_CHICK Neurobeachin (Fragment) OS=Gallus gallus GN=NBEA PE=2 SV=1
Length = 793
Score = 55.8 bits (133), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/28 (89%), Positives = 28/28 (100%)
Query: 10 RKAQFLSLAVVYFISVLMVSKYRDILEP 37
++AQFL+LAVVYFISVLMVSKYRDILEP
Sbjct: 656 KQAQFLALAVVYFISVLMVSKYRDILEP 683
>sp|C5GLN0|RRP36_AJEDR rRNA biogenesis protein RRP36 OS=Ajellomyces dermatitidis (strain
ER-3 / ATCC MYA-2586) GN=RRP36 PE=3 SV=1
Length = 356
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 28 VSKYRDILEPPPMLPRALSPP-----LTQNNNQGHEDCLSTVQQHIIQNRGFLAISYMLQ 82
VS+ R ILEPPP +P+A P L+ + N G+ S H +N FL SY
Sbjct: 176 VSRKRTILEPPP-VPKARDPRFDSVVLSHSTN-GNSSTASNAAIHARKNYAFL-DSYRKD 232
Query: 83 KLSREHLTLEVLGSFLRFTKHLVTYMLQKLSR 114
+++ L +V S L+ KH Y ++L+R
Sbjct: 233 EIA--QLRKQV--STLQTKKHKTNYDERELAR 260
>sp|C5JYW1|RRP36_AJEDS rRNA biogenesis protein RRP36 OS=Ajellomyces dermatitidis (strain
SLH14081) GN=RRP36 PE=3 SV=1
Length = 356
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 28 VSKYRDILEPPPMLPRALSPP-----LTQNNNQGHEDCLSTVQQHIIQNRGFLAISYMLQ 82
VS+ R ILEPPP +P+A P L+ + N G+ S H +N FL SY
Sbjct: 176 VSRKRTILEPPP-VPKARDPRFDSVVLSHSTN-GNSSTASNAAIHARKNYAFL-DSYRKD 232
Query: 83 KLSREHLTLEVLGSFLRFTKHLVTYMLQKLSR 114
+++ L +V S L+ KH Y ++L+R
Sbjct: 233 EIA--QLRKQV--STLQTKKHKTNYDERELAR 260
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,449,010
Number of Sequences: 539616
Number of extensions: 2973784
Number of successful extensions: 9748
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 9713
Number of HSP's gapped (non-prelim): 38
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)