Query psy10493
Match_columns 226
No_of_seqs 74 out of 76
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:34:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10493.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10493hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1248|consensus 81.1 14 0.00029 40.6 10.5 178 1-201 63-275 (1176)
2 PF07466 DUF1517: Protein of u 47.3 53 0.0012 30.4 6.0 28 139-166 138-165 (289)
3 KOG1788|consensus 36.0 27 0.00058 39.3 2.5 52 146-199 1502-1558(2799)
4 PF14500 MMS19_N: Dos2-interac 29.7 2E+02 0.0044 26.0 6.8 56 66-128 12-67 (262)
5 PF14293 YWFCY: YWFCY protein 25.9 22 0.00047 26.5 -0.1 21 186-206 5-31 (61)
6 PHA02871 hypothetical protein; 23.8 50 0.0011 29.1 1.7 45 142-212 160-205 (222)
7 PF04145 Ctr: Ctr copper trans 23.1 1.5E+02 0.0033 23.2 4.2 33 9-41 23-57 (144)
8 PF12231 Rif1_N: Rap1-interact 21.2 6.9E+02 0.015 23.4 9.3 72 61-132 59-141 (372)
9 KOG4316|consensus 20.9 1.2E+02 0.0026 26.6 3.4 61 141-206 80-143 (172)
10 cd01068 sensor_globin Globin d 19.9 3E+02 0.0065 21.4 5.3 74 116-193 11-91 (147)
No 1
>KOG1248|consensus
Probab=81.13 E-value=14 Score=40.58 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=112.6
Q ss_pred CCCchhhhhhhhhHHHHHHHHHHHHHHHhhcccccCCCCCCCCCCCCCcccCCCCCccccccchhHHHHhhhhHHHHHHH
Q psy10493 1 MEPFKTQQQRKAQFLSLAVVYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQGHEDCLSTVQQHIIQNRGFLAISYM 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~GtqlCs~r~qqqii~c~GflVi~pL 80 (226)
|+|++--+. ++.|.|.+-|.=|..|++|+-|++.-=. |.-. + +.-.....+..|.|++......=
T Consensus 63 mt~~e~~s~--~~LL~li~~~VPs~vL~~kFs~~~~~l~---~~~~-------~---~stn~svlr~~iscL~~lLraQd 127 (1176)
T KOG1248|consen 63 MTPIEGASS--AYLLVLILKYVPSPVLQAKFSDTLNILA---PFLT-------A---ESTNGSVLRLAISCLEDLLRAQD 127 (1176)
T ss_pred hhhhhhhhH--HHHHHHHHhhCCHHHHHHHHHHHHHHHH---HHHh-------h---hcccchHHHHHHHHHHHHHHHcc
Confidence 445554444 7889999999999999999998875321 1111 1 11124566777888874444322
Q ss_pred HHhhc------------------hh---hhhHHHHHHHHH----------HH-HHHHHHHHhhcccccccH---HHHHHH
Q psy10493 81 LQKLS------------------RE---HLTLEVLGSFLR----------FT-KHLVTYMLQKLSREHLTL---EVLGSF 125 (226)
Q Consensus 81 L~q~~------------------~~---~lT~eVLe~vl~----------~~-~sil~fLLQ~vsPqhLt~---~~L~~l 125 (226)
..-++ ++ .....++.+||+ =+ .++.=|+|+++.+++... .+++.|
T Consensus 128 ~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~~~a~~t~v~~~L 207 (1176)
T KOG1248|consen 128 ASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAAVLKGPPFAPDAEHPASLSVAKFCLALIESKLGSAENTTVLRSL 207 (1176)
T ss_pred hhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHcCCCCCccccchHHHHHHHHHHHHHHhhhchHHHHHHHHHH
Confidence 11111 11 123345556663 22 788889999999999944 344444
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHhhccCccceeecCHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHhhcc
Q psy10493 126 LRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTAVYSNVRRVSTILQTMHTLK 201 (226)
Q Consensus 126 ~~~~k~L~~~~s~~s~~Llkql~d~ILfNP~LWI~tp~~VQ~~LY~~L~teF~~~~~~~~~vrrV~tVLdimh~LK 201 (226)
-.|-...+.+-..++|-+|+++|.-.. -.+..|=..-|+-+..-|...+. +.+---..++|..+++++
T Consensus 208 ----~Ll~~~~~~~p~~li~sl~e~lL~i~~---~s~v~v~~~~~q~l~~lf~~~~~-~l~a~~~a~lL~al~~l~ 275 (1176)
T KOG1248|consen 208 ----MLLRDVLSTFPRPLIKSLCEVLLNITT---ESPVLVLLEVLQCLHSLFKKHPT-ALAAELNARLLTALMTLS 275 (1176)
T ss_pred ----HHHHHhhccCCHHHHHHHHHHHHhhcc---cchHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHhC
Confidence 233333343779999999998875332 35677778888889998987766 444455567888888743
No 2
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=47.31 E-value=53 Score=30.43 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.3
Q ss_pred ChHHHHHHHHHhhccCccceeecCHHHH
Q psy10493 139 NSELLLKQALDHILFNPGLWIHAPAPVQ 166 (226)
Q Consensus 139 ~s~~Llkql~d~ILfNP~LWI~tp~~VQ 166 (226)
.=..+|.|..-.+|-+|..|+|+..++|
T Consensus 138 Gl~~~L~E~~l~LLR~~~~wv~~~~~~~ 165 (289)
T PF07466_consen 138 GLARVLQETTLALLRHPEYWVYGSSESQ 165 (289)
T ss_pred HHHHHHHHHHHHHHhCcCceEEEeeccc
Confidence 3356788889999999999999999998
No 3
>KOG1788|consensus
Probab=36.01 E-value=27 Score=39.28 Aligned_cols=52 Identities=21% Similarity=0.462 Sum_probs=38.8
Q ss_pred HHHHhhccCccceeecCHHHHHHHHHHHHHHHhhcccccc-----ccchhhHHHHHHhh
Q psy10493 146 QALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTAVYS-----NVRRVSTILQTMHT 199 (226)
Q Consensus 146 ql~d~ILfNP~LWI~tp~~VQ~~LY~~L~teF~~~~~~~~-----~vrrV~tVLdimh~ 199 (226)
++.+|++++-.+|+-+|..+|+.+.+||-+-. .--+|+ .+||+--|-.++-+
T Consensus 1502 dmvehvlldwtlwvt~pvsiqia~lgflenl~--s~~wyr~hnl~ilr~inlv~hllvt 1558 (2799)
T KOG1788|consen 1502 DMVEHVLLDWTLWVTAPVSIQIASLGFLENLI--SILWYRSHNLAILRQINLVKHLLVT 1558 (2799)
T ss_pred hHHHHHhhheeeeeccceeehhHHHHHHHHHH--HHHhhhhccHHHHHHHhHHHHHHhh
Confidence 67889999999999999999999999998754 223333 45666555555544
No 4
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=29.68 E-value=2e+02 Score=25.97 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=35.6
Q ss_pred HHHHhhhhHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHH
Q psy10493 66 QHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVLGSFLRF 128 (226)
Q Consensus 66 qqii~c~GflVi~pLL~q~~~~~lT~eVLe~vl~~~~sil~fLLQ~vsPqhLt~~~L~~l~~~ 128 (226)
.+.+-.+|+..++-.+++.+++.++++=++ .++.|...+..=.+--..+|..+.++
T Consensus 12 d~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~-------~L~~F~~~rl~D~~~~~~~l~gl~~L 67 (262)
T PF14500_consen 12 DPIIRAKALELLSEVLERLPPDFLSRQEVQ-------VLLDFFCSRLDDHACVQPALKGLLAL 67 (262)
T ss_pred CHHHHHHHHHHHHHHHHhCCHhhccHHHHH-------HHHHHHHHHhccHhhHHHHHHHHHHH
Confidence 456778889999999999998888884332 23444555554444444445555333
No 5
>PF14293 YWFCY: YWFCY protein
Probab=25.93 E-value=22 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.806 Sum_probs=11.8
Q ss_pred ccchhhHHHHHHhhcc------cceee
Q psy10493 186 NVRRVSTILQTMHTLK------FYYWV 206 (226)
Q Consensus 186 ~vrrV~tVLdimh~LK------~yYW~ 206 (226)
++|++..|+|+|+.+. ++||+
T Consensus 5 dlr~L~KImdf~R~iSI~~l~ih~Y~~ 31 (61)
T PF14293_consen 5 DLRALRKIMDFMRAISILFLVIHFYWF 31 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666655432 36775
No 6
>PHA02871 hypothetical protein; Provisional
Probab=23.83 E-value=50 Score=29.12 Aligned_cols=45 Identities=31% Similarity=0.642 Sum_probs=27.6
Q ss_pred HHHHHHHHhhccCccceeecCHHHHHHHHHHHHHHHhhccccccccchhh-HHHHHHhhcccceeeecCCCC
Q psy10493 142 LLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTAVYSNVRRVS-TILQTMHTLKFYYWVVNPRLK 212 (226)
Q Consensus 142 ~Llkql~d~ILfNP~LWI~tp~~VQ~~LY~~L~teF~~~~~~~~~vrrV~-tVLdimh~LK~yYW~v~Pr~r 212 (226)
.++.+.+|.+ .|||..|--- ++|.. |+-|. .+=|||||...|+..
T Consensus 160 twvndwcddl----ciwiwspccy---------------------vkrcirtmcdt-ftkkffywfiapags 205 (222)
T PHA02871 160 TWVNDWCDDL----CIWIWSPCCY---------------------VKRCIRTMCDT-FTKKFFYWFIAPAGS 205 (222)
T ss_pred CcHhhhhhhh----hheeecchHH---------------------HHHHHHHHHHH-HHhhhheeEeccCCC
Confidence 4777888854 6899887531 12222 22333 345999999888643
No 7
>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.
Probab=23.09 E-value=1.5e+02 Score=23.15 Aligned_cols=33 Identities=24% Similarity=0.148 Sum_probs=12.5
Q ss_pred hhhhhHHHHHHHHHHHHHH--HhhcccccCCCCCC
Q psy10493 9 QRKAQFLSLAVVYFISVLM--VSKYRDILEPPPML 41 (226)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 41 (226)
+.-+=+++..++++++++. +..+|..+|.....
T Consensus 23 s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~ 57 (144)
T PF04145_consen 23 SAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWAR 57 (144)
T ss_dssp --HHHHHHHHHHHHHHHHTTT--------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567778888888875 46778888765443
No 8
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=21.16 E-value=6.9e+02 Score=23.42 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=44.0
Q ss_pred ccchhHHHHhhhhHHHHHHHHHhhchhhhhHHHHHHHHHHH------HHHHHHH-----HhhcccccccHHHHHHHHHHH
Q psy10493 61 LSTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFT------KHLVTYM-----LQKLSREHLTLEVLGSFLRFT 129 (226)
Q Consensus 61 s~r~qqqii~c~GflVi~pLL~q~~~~~lT~eVLe~vl~~~------~sil~fL-----LQ~vsPqhLt~~~L~~l~~~~ 129 (226)
.+++..|++.|.|+.+-.|-+...=++.....+++.....+ +.+.... -|+.+|+-+|.+..+.++..-
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l 138 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAAL 138 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHH
Confidence 47899999999998888888776655544444444222111 3333333 377788777776666555433
Q ss_pred HHH
Q psy10493 130 KHL 132 (226)
Q Consensus 130 k~L 132 (226)
..+
T Consensus 139 ~~i 141 (372)
T PF12231_consen 139 HNI 141 (372)
T ss_pred HHh
Confidence 333
No 9
>KOG4316|consensus
Probab=20.90 E-value=1.2e+02 Score=26.57 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhc-cCccceeecCHHHHHHHHHHHHHHHhhcccccccc--chhhHHHHHHhhcccceee
Q psy10493 141 ELLLKQALDHIL-FNPGLWIHAPAPVQSRLYAYLGTEFLADTAVYSNV--RRVSTILQTMHTLKFYYWV 206 (226)
Q Consensus 141 ~~Llkql~d~IL-fNP~LWI~tp~~VQ~~LY~~L~teF~~~~~~~~~v--rrV~tVLdimh~LK~yYW~ 206 (226)
.-=+++++|... +|-.+||+|-+--|..||+-=.+- ...-.+-.. ..=+.+||-|-| =||.
T Consensus 80 rktvkaVldRFkRL~~G~WIr~h~Gr~Kkl~kK~~a~--~krl~~~vfcnktQs~lLDKm~T---syW~ 143 (172)
T KOG4316|consen 80 RKTVKAVLDRFKRLHCGLWIRAHPGRHKKLYKKDEAW--QKRLLYYVFCNKTQSELLDKMMT---SYWL 143 (172)
T ss_pred cccHHHHHHHHHhcccCeeeeecCchhhhhhhcCHHH--HHHHHHhheechHHHHHHHHHhh---HHhc
Confidence 344666666654 588999999999999888632211 111111111 223559999999 8997
No 10
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=19.90 E-value=3e+02 Score=21.41 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=45.1
Q ss_pred cccHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhccCccceeec--C---HHHHHHHHHHHHHHHhhc--cccccccc
Q psy10493 116 HLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHA--P---APVQSRLYAYLGTEFLAD--TAVYSNVR 188 (226)
Q Consensus 116 hLt~~~L~~l~~~~k~L~~~~s~~s~~Llkql~d~ILfNP~LWI~t--p---~~VQ~~LY~~L~teF~~~--~~~~~~vr 188 (226)
.++.+..+.+.++...+.. ..+.++++.+++++-+|..=-.- + ...+..+-.++..-|-++ .......+
T Consensus 11 ~~~~~d~~~l~~~~~~~~~----~~~~i~~~FY~~l~~~p~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~d~~y~~~~~ 86 (147)
T cd01068 11 GLDEDDLSLLKALRPVIEA----NADELVDRFYDHLRRTPETAAFLGDESVVERLKSTQRRHWVELFSGVYDEAYIAQRV 86 (147)
T ss_pred CCCHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHhcChHHHHHhCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 5666667777655555533 67899999999999999863221 2 224444555555555333 34555555
Q ss_pred hhhHH
Q psy10493 189 RVSTI 193 (226)
Q Consensus 189 rV~tV 193 (226)
+||.+
T Consensus 87 ~iG~~ 91 (147)
T cd01068 87 RIGEV 91 (147)
T ss_pred HHHHH
Confidence 66643
Done!