Query psy10493
Match_columns 226
No_of_seqs 74 out of 76
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:34:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_7 Plectin/S10 domain cont 32.8 35 0.0012 28.6 3.5 48 160-207 3-68 (162)
2 3o71_B Peptide of deleted in c 19.8 32 0.0011 21.0 0.7 11 152-162 9-19 (27)
3 2w31_A Globin; oxygen transpor 17.6 1.1E+02 0.0037 23.1 3.5 41 116-160 12-52 (162)
4 1h3o_B Transcription initiatio 15.1 1.1E+02 0.0039 22.2 2.9 61 80-159 14-76 (76)
5 1z8u_A Alpha-hemoglobin stabil 14.6 57 0.002 25.3 1.2 15 24-38 78-92 (102)
6 1or4_A Heme-based aerotactic t 14.3 1.3E+02 0.0044 23.7 3.2 73 116-192 42-121 (178)
7 1qmy_A Protease, leader protea 13.9 76 0.0026 26.5 1.8 37 112-151 45-82 (167)
8 2npp_B PP2A, B subunit, serine 13.7 4.8E+02 0.017 24.4 7.4 85 60-157 259-355 (449)
9 2nny_A C-ETS-1 protein, P54; p 13.0 76 0.0026 26.7 1.5 14 193-206 116-129 (171)
10 1gvj_A C-ETS-1 protein, P54; t 10.9 74 0.0025 26.1 0.8 14 193-206 91-104 (146)
No 1
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=32.83 E-value=35 Score=28.61 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=32.0
Q ss_pred ecCHHHHHHHHHHHHHHHh----hccccccccchhhH--HHHHHhhcc------------cceeee
Q psy10493 160 HAPAPVQSRLYAYLGTEFL----ADTAVYSNVRRVST--ILQTMHTLK------------FYYWVV 207 (226)
Q Consensus 160 ~tp~~VQ~~LY~~L~teF~----~~~~~~~~vrrV~t--VLdimh~LK------------~yYW~v 207 (226)
|-|-+..+..|.+|-+|=+ .|......+..|+- |+.+|..|| ||||+.
T Consensus 3 ~ipK~nR~~IYe~LFkeGV~VaKKD~~kHpel~~vpNL~ViKamqSLkSRGyVkEqFaWrhyYw~L 68 (162)
T 2xzm_7 3 HVLKATKIRIYKQLLQDGVFVLKKDFEGHHEETGVPNLHCYILVRSLKDRGFLEEIFNWGFTYYYL 68 (162)
T ss_dssp CCCHHHHHHHHHHHHHHTEEEEESCSSSBCTTTCCBHHHHHHHHHHHHHHTSEEEEEETTEEEEEE
T ss_pred ccchHHHHHHHHHHhhcCcEEEeccccCCCcccCcCcHHHHHHHhcccccccccceeeeEEEEEEE
Confidence 4577888999999988611 23334445554554 778887665 699983
No 2
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=19.77 E-value=32 Score=21.01 Aligned_cols=11 Identities=55% Similarity=1.044 Sum_probs=8.6
Q ss_pred ccCccceeecC
Q psy10493 152 LFNPGLWIHAP 162 (226)
Q Consensus 152 LfNP~LWI~tp 162 (226)
+..|.||||-.
T Consensus 9 lkppdlwihhe 19 (27)
T 3o71_B 9 LRPPDLWIHHE 19 (27)
T ss_pred CCCcceeeehh
Confidence 45799999964
No 3
>2w31_A Globin; oxygen transport, hexacoordination; HET: HEM; 1.50A {Geobacter sulfurreducens}
Probab=17.58 E-value=1.1e+02 Score=23.14 Aligned_cols=41 Identities=24% Similarity=0.012 Sum_probs=33.4
Q ss_pred cccHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhccCccceee
Q psy10493 116 HLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIH 160 (226)
Q Consensus 116 hLt~~~L~~l~~~~k~L~~~~s~~s~~Llkql~d~ILfNP~LWI~ 160 (226)
.||.+..+.+.+....+-. .++.+++..+++++-+|.+-=.
T Consensus 12 ~lt~~d~~~l~~~~p~l~~----~~~~i~~~FY~~l~~~pe~~~~ 52 (162)
T 2w31_A 12 RFTDEDAELLGSLFPLAET----NKERLADQFYDYLLGIPETAEF 52 (162)
T ss_dssp TCCHHHHHHHHHTHHHHHH----THHHHHHHHHHHHHTSHHHHGG
T ss_pred CCCHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHcCHHHHHH
Confidence 6888888888777776643 7899999999999999987633
No 4
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=15.14 E-value=1.1e+02 Score=22.19 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=32.5
Q ss_pred HHHhhch-hhhhHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHhhccCCChHH-HHHHHHHhhccCccc
Q psy10493 80 MLQKLSR-EHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVLGSFLRFTKHLVTCLTPNSEL-LLKQALDHILFNPGL 157 (226)
Q Consensus 80 LL~q~~~-~~lT~eVLe~vl~~~~sil~fLLQ~vsPqhLt~~~L~~l~~~~k~L~~~~s~~s~~-Llkql~d~ILfNP~L 157 (226)
|+.|.|+ ..+..+|-+.++.++= ..-.++++..+++||+= .+.. =+|++--|+=-|-++
T Consensus 14 Lv~~idp~~~ld~~vee~ll~lAD-------------dFV~~V~~~ac~lAKhR------~s~~le~kDvql~Ler~wni 74 (76)
T 1h3o_B 14 LVREVDPNEQLDEDVEEMLLQIAD-------------DFIESVVTAACQLARHR------KSSTLEVKDVQLHLERQWNM 74 (76)
T ss_dssp HHHHHCSSCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHT------TCCEECHHHHHHHHHHHTCC
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHhc------CCCCccHHHHHHHHHhhcCC
Confidence 4555553 3456666665554440 00134456666666664 2223 267776666666666
Q ss_pred ee
Q psy10493 158 WI 159 (226)
Q Consensus 158 WI 159 (226)
||
T Consensus 75 ~i 76 (76)
T 1h3o_B 75 WI 76 (76)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 5
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=14.59 E-value=57 Score=25.31 Aligned_cols=15 Identities=33% Similarity=0.600 Sum_probs=9.9
Q ss_pred HHHHHhhcccccCCC
Q psy10493 24 SVLMVSKYRDILEPP 38 (226)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (226)
+--...|||+.|...
T Consensus 78 ~~pFL~KYR~fLks~ 92 (102)
T 1z8u_A 78 ANPFLAKYRDFLKSH 92 (102)
T ss_dssp HHHHHHHHHTTTCC-
T ss_pred hhHHHHHHHHHHhcc
Confidence 344567999998543
No 6
>1or4_A Heme-based aerotactic transducer hemat; globin fold, signaling protein; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.2 PDB: 1or6_A*
Probab=14.34 E-value=1.3e+02 Score=23.67 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhccCccceeecC-HH-HH---HHHHHHHHHHHhhc--cccccccc
Q psy10493 116 HLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIHAP-AP-VQ---SRLYAYLGTEFLAD--TAVYSNVR 188 (226)
Q Consensus 116 hLt~~~L~~l~~~~k~L~~~~s~~s~~Llkql~d~ILfNP~LWI~tp-~~-VQ---~~LY~~L~teF~~~--~~~~~~vr 188 (226)
.||.+..+.+.++...+-. .++.+++..+++++-+|.+-=.-. .+ ++ ..+-.++..-|-++ ......+.
T Consensus 42 ~lt~~d~~~l~~~~p~l~~----~~~~ivd~FY~~l~~~pe~~~~f~~~~~~~rLk~~q~~~~~~l~~g~~d~~y~~~~~ 117 (178)
T 1or4_A 42 RLGDAELYVLEQLQPLIQE----NIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVIDDEFIEKRN 117 (178)
T ss_dssp TCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCHHHHHHhCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 6788888888777777744 689999999999999998763321 11 22 44445544444221 24555555
Q ss_pred hhhH
Q psy10493 189 RVST 192 (226)
Q Consensus 189 rV~t 192 (226)
+|+.
T Consensus 118 ~IG~ 121 (178)
T 1or4_A 118 RIAS 121 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 7
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=13.94 E-value=76 Score=26.54 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=23.6
Q ss_pred cccccccHHHHHHHHHHHHHHhhccCCChH-HHHHHHHHhh
Q psy10493 112 LSREHLTLEVLGSFLRFTKHLVTCLTPNSE-LLLKQALDHI 151 (226)
Q Consensus 112 vsPqhLt~~~L~~l~~~~k~L~~~~s~~s~-~Llkql~d~I 151 (226)
-|||+||.++++++-+.+. | .++..|+ .|+==-+.|+
T Consensus 45 ~spenlt~~~I~ql~e~TG-l--dL~eGgPPalViw~ik~l 82 (167)
T 1qmy_A 45 SSPENLTLEAIKQLEDLTG-L--ELHEGGPPALVIWNIKHL 82 (167)
T ss_dssp TCSSCCHHHHHHHHHHHHC-C--CCSSCCCHHHHHHHHGGG
T ss_pred CChhhhhHHHHHHHHHhhc-c--eeccCCCCEEEEEeehhh
Confidence 3899999999999976666 3 3444444 4443334443
No 8
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=13.70 E-value=4.8e+02 Score=24.43 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=49.6
Q ss_pred cccchhHHHHhhhh-HHHHHHHHHhhchhhhhHHHHHHHH----------H-HHHHHHHHHHhhcccccccHHHHHHHHH
Q psy10493 60 CLSTVQQHIIQNRG-FLAISYMLQKLSREHLTLEVLGSFL----------R-FTKHLVTYMLQKLSREHLTLEVLGSFLR 127 (226)
Q Consensus 60 Cs~r~qqqii~c~G-flVi~pLL~q~~~~~lT~eVLe~vl----------~-~~~sil~fLLQ~vsPqhLt~~~L~~l~~ 127 (226)
|.+..-+|+.+|.- |. + .+..++..|+.-.+ . +.+.-+.-+|..++|++...=....|.+
T Consensus 259 ~l~~y~~qL~ycv~qf~------e--KDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~ 330 (449)
T 2npp_B 259 SLSVYHPQLAYCVVQFL------E--KDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQ 330 (449)
T ss_dssp CGGGTHHHHHHHHHHHH------H--HCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHH------h--cCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55566667777754 32 1 14457777877444 1 2277888889999999877655555544
Q ss_pred HHHHHhhccCCChHHHHHHHHHhhccCccc
Q psy10493 128 FTKHLVTCLTPNSELLLKQALDHILFNPGL 157 (226)
Q Consensus 128 ~~k~L~~~~s~~s~~Llkql~d~ILfNP~L 157 (226)
+|+-+ ++..-...+.++ +++-|+.+
T Consensus 331 la~ci----~S~hfqVAErAL-~~w~N~~i 355 (449)
T 2npp_B 331 LAKCV----SSPHFQVAERAL-YYWNNEYI 355 (449)
T ss_dssp HHHHH----TCSCHHHHHHHH-GGGGCHHH
T ss_pred HHHHH----cCCCHHHHHHHH-HHHCCHHH
Confidence 44443 333334444444 35555543
No 9
>2nny_A C-ETS-1 protein, P54; protein-DNA complex, transcription/DNA complex; 2.58A {Homo sapiens} PDB: 3ri4_A 3mfk_A 1mdm_B
Probab=12.96 E-value=76 Score=26.70 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.6
Q ss_pred HHHHHhhcccceee
Q psy10493 193 ILQTMHTLKFYYWV 206 (226)
Q Consensus 193 VLdimh~LK~yYW~ 206 (226)
-..+-++|+|||+-
T Consensus 116 YeKLSRaLRyYY~k 129 (171)
T 2nny_A 116 YEKLSRGLRYYYDK 129 (171)
T ss_dssp HHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHHhc
Confidence 45566889999985
No 10
>1gvj_A C-ETS-1 protein, P54; transcription, autoinhibition, ETS domain; 1.53A {Homo sapiens} SCOP: a.4.5.21 PDB: 1md0_A 1r36_A 1k78_B 1k79_A* 1k7a_A* 2stt_A* 2stw_A*
Probab=10.85 E-value=74 Score=26.12 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.4
Q ss_pred HHHHHhhcccceee
Q psy10493 193 ILQTMHTLKFYYWV 206 (226)
Q Consensus 193 VLdimh~LK~yYW~ 206 (226)
=..+-++|+|||+-
T Consensus 91 YeKLSRaLRyYY~k 104 (146)
T 1gvj_A 91 YEKLSRGLRYYYDK 104 (146)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 45566888899985
Done!