Query psy10493
Match_columns 226
No_of_seqs 74 out of 76
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 19:34:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10493.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10493hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3bz7a1 b.34.3.1 (A:34-79) Myo 22.1 17 0.0012 22.7 1.4 16 203-225 1-16 (46)
2 d1x3sa1 c.37.1.8 (A:2-178) Rab 17.8 24 0.0018 25.0 1.7 20 139-158 156-175 (177)
3 d1or4a_ a.1.1.2 (A:) Heme-base 14.0 63 0.0046 23.4 3.2 73 116-192 33-112 (169)
4 d2qw4a1 a.123.1.1 (A:32-264) O 13.8 1.8E+02 0.013 21.8 6.1 75 121-198 120-198 (233)
5 d2o3la1 a.69.4.1 (A:14-95) Hyp 12.0 1.1E+02 0.0082 20.6 3.9 37 115-151 10-49 (82)
6 d1m0ua2 c.47.1.5 (A:47-122) Cl 11.6 22 0.0016 23.1 -0.1 11 198-208 2-12 (76)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 11.2 89 0.0065 17.4 2.5 20 13-32 5-24 (27)
8 d2o4ta1 a.69.4.1 (A:16-105) Un 10.4 1.5E+02 0.011 20.2 4.2 37 115-151 6-45 (90)
9 d1l5ja1 a.118.15.1 (A:1-160) A 10.1 1.4E+02 0.01 22.7 4.3 41 109-152 14-54 (160)
10 d2fnoa2 c.47.1.5 (A:1-87) Hypo 8.5 34 0.0024 22.6 -0.1 14 197-210 5-18 (87)
No 1
>d3bz7a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=22.11 E-value=17 Score=22.71 Aligned_cols=16 Identities=44% Similarity=1.099 Sum_probs=10.4
Q ss_pred ceeeecCCCCCCCCCCCCCcccc
Q psy10493 203 YYWVVNPRLKTGVIPKGLGRFLC 225 (226)
Q Consensus 203 yYW~v~Pr~rsg~~~kg~~~~~~ 225 (226)
|-|+ ||+ ||+.|..-|
T Consensus 1 yiwy-npd------pkerdsyec 16 (46)
T d3bz7a1 1 YIWY-NPD------PKERDSYEC 16 (46)
T ss_dssp EEEE-CSS------TTCTTCCEE
T ss_pred Cccc-CCC------ccccccchh
Confidence 5688 774 566666655
No 2
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.84 E-value=24 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHhhccCccce
Q psy10493 139 NSELLLKQALDHILFNPGLW 158 (226)
Q Consensus 139 ~s~~Llkql~d~ILfNP~LW 158 (226)
+=+.+.+++++.++-||.||
T Consensus 156 gv~e~f~~l~~~l~~~p~l~ 175 (177)
T d1x3sa1 156 GVQCAFEELVEKIIQTPGLW 175 (177)
T ss_dssp THHHHHHHHHHHHHTSGGGT
T ss_pred CHHHHHHHHHHHHccCcccc
Confidence 34678889999999999999
No 3
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=14.03 E-value=63 Score=23.36 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhccCccceee--c---CHHHHHHHHHHHHHHHhhc--cccccccc
Q psy10493 116 HLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHILFNPGLWIH--A---PAPVQSRLYAYLGTEFLAD--TAVYSNVR 188 (226)
Q Consensus 116 hLt~~~L~~l~~~~k~L~~~~s~~s~~Llkql~d~ILfNP~LWI~--t---p~~VQ~~LY~~L~teF~~~--~~~~~~vr 188 (226)
.||.+-++.+.++...+- +..+.++++.+++++-+|.+==. . -...+..+-.++..-|-++ .......+
T Consensus 33 ~lt~~d~~~L~~~~p~i~----~~~~~i~d~FY~~l~~~Pe~~~~f~~~~~~erlk~~~~~~~~~lf~g~~D~~y~~~~~ 108 (169)
T d1or4a_ 33 RLGDAELYVLEQLQPLIQ----ENIVNIVDAFYKNLDHESSLMDIINDHSSVDRLKQTLKRHIQEMFAGVIDDEFIEKRN 108 (169)
T ss_dssp TCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSHHHHHHHHHHCCHHHHHHHHHHHHHHTTSSCEEHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCHHHHHHHcCccchHHHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 688888888877766663 36889999999999888875211 1 1234445555555544322 24445555
Q ss_pred hhhH
Q psy10493 189 RVST 192 (226)
Q Consensus 189 rV~t 192 (226)
+||.
T Consensus 109 ~IG~ 112 (169)
T d1or4a_ 109 RIAS 112 (169)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 4
>d2qw4a1 a.123.1.1 (A:32-264) Orphan nuclear receptor NR4A1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.77 E-value=1.8e+02 Score=21.77 Aligned_cols=75 Identities=20% Similarity=0.222 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhhccCC-ChHHHHHHHHHhhccCccceeecCHHH---HHHHHHHHHHHHhhccccccccchhhHHHHH
Q psy10493 121 VLGSFLRFTKHLVTCLTP-NSELLLKQALDHILFNPGLWIHAPAPV---QSRLYAYLGTEFLADTAVYSNVRRVSTILQT 196 (226)
Q Consensus 121 ~L~~l~~~~k~L~~~~s~-~s~~Llkql~d~ILfNP~LWI~tp~~V---Q~~LY~~L~teF~~~~~~~~~vrrV~tVLdi 196 (226)
..+.+.++++.+.+..-. ..-.+++-+ +|||++-.+..+..| |.+++.-|..+......-.+.-.|.++++..
T Consensus 120 ~~~~i~~~~~~l~~L~ld~~E~alLkAi---vL~~d~~gL~~~~~Ve~lq~~~~~aL~~yi~~~~~~~~~~~rf~kLL~~ 196 (233)
T d2qw4a1 120 WIDSILAFSRSLHSLLVDVPAFACLSAL---VLITDRHGLQEPRRVEELQNRIASCLKEHVAAVAGEPQPASCLSRLLGK 196 (233)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHH---HHSSCCTTCSCHHHHHHHHHHHHHHHHHHHHHSCC---CCTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHH---HhcCcccCccCHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 456666777766543222 344566555 678988887766554 5566666655543221222223455555544
Q ss_pred Hh
Q psy10493 197 MH 198 (226)
Q Consensus 197 mh 198 (226)
+.
T Consensus 197 Lp 198 (233)
T d2qw4a1 197 LP 198 (233)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 5
>d2o3la1 a.69.4.1 (A:14-95) Hypothetical protein BCE3448 {Bacillus cereus [TaxId: 1396]}
Probab=12.03 E-value=1.1e+02 Score=20.57 Aligned_cols=37 Identities=8% Similarity=0.008 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHHHHHHHhhccCC---ChHHHHHHHHHhh
Q psy10493 115 EHLTLEVLGSFLRFTKHLVTCLTP---NSELLLKQALDHI 151 (226)
Q Consensus 115 qhLt~~~L~~l~~~~k~L~~~~s~---~s~~Llkql~d~I 151 (226)
+.|+.+--....+|-+||.+...- ..+.++.++++++
T Consensus 10 k~Lp~dy~~~y~~i~~YL~~~~~~~~~~~~~il~dil~l~ 49 (82)
T d2o3la1 10 AALPEDYQFVFKKIQNYMWNFSAGNGMDMLHIQYELIDLF 49 (82)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 467777778888888999765322 2335666666654
No 6
>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.57 E-value=22 Score=23.11 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=8.8
Q ss_pred hhcccceeeec
Q psy10493 198 HTLKFYYWVVN 208 (226)
Q Consensus 198 h~LK~yYW~v~ 208 (226)
|.+|.|||.+.
T Consensus 2 ~s~kL~Yf~~~ 12 (76)
T d1m0ua2 2 HSYTLFYFNVK 12 (76)
T ss_dssp CCEEEEEESSS
T ss_pred ccEEEEecCCc
Confidence 67899999853
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=11.18 E-value=89 Score=17.40 Aligned_cols=20 Identities=35% Similarity=0.405 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q psy10493 13 QFLSLAVVYFISVLMVSKYR 32 (226)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~ 32 (226)
-+.+|.+||--|+-||--=|
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 35789999999999985433
No 8
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=10.45 E-value=1.5e+02 Score=20.17 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=23.4
Q ss_pred ccccHHHHHHHHHHHHHHhhccCC---ChHHHHHHHHHhh
Q psy10493 115 EHLTLEVLGSFLRFTKHLVTCLTP---NSELLLKQALDHI 151 (226)
Q Consensus 115 qhLt~~~L~~l~~~~k~L~~~~s~---~s~~Llkql~d~I 151 (226)
|.|+.+--....+|-+||.+...- ..+.++.++++++
T Consensus 6 k~Lp~dy~~~y~~i~~YL~~~~~~~~~~~~~il~dil~ll 45 (90)
T d2o4ta1 6 EKLPKDYQIVYKEIQKYLFKVGPVELNEGIGLLSEILGFF 45 (90)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567777777788888888665322 1235666666654
No 9
>d1l5ja1 a.118.15.1 (A:1-160) Aconitase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.08 E-value=1.4e+02 Score=22.71 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=27.7
Q ss_pred HhhcccccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHHhhc
Q psy10493 109 LQKLSREHLTLEVLGSFLRFTKHLVTCLTPNSELLLKQALDHIL 152 (226)
Q Consensus 109 LQ~vsPqhLt~~~L~~l~~~~k~L~~~~s~~s~~Llkql~d~IL 152 (226)
-|-++|.-|+.+.++.++ +.|-+..+...+.+++-+..++.
T Consensus 14 ~~GlpPlPLdaeq~~eli---~llk~~~~~~~~~lldll~~rv~ 54 (160)
T d1l5ja1 14 AEGIAPKPLDANQMAALV---ELLKNPPAGEEEFLLDLLTNRVP 54 (160)
T ss_dssp HTTCCCCCCCHHHHHHHH---HHHHSCCTTCHHHHHHHHHHSSC
T ss_pred HCCCCCCCCCHHHHHHHH---HHhcCCCCccHHHHHHHHHHhcc
Confidence 478999999998888776 44544344455556666666554
No 10
>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=8.47 E-value=34 Score=22.59 Aligned_cols=14 Identities=50% Similarity=1.044 Sum_probs=10.4
Q ss_pred HhhcccceeeecCC
Q psy10493 197 MHTLKFYYWVVNPR 210 (226)
Q Consensus 197 mh~LK~yYW~v~Pr 210 (226)
|.+++.|||.+..+
T Consensus 5 M~~~~L~Y~~~~g~ 18 (87)
T d2fnoa2 5 MNTFDLYYWPVPFR 18 (87)
T ss_dssp CBSEEEECCSSSST
T ss_pred CCCeEEEECCCCcc
Confidence 66789999985443
Done!