RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10493
         (226 letters)



>gnl|CDD|182864 PRK10955, PRK10955, DNA-binding transcriptional regulator CpxR;
           Provisional.
          Length = 232

 Score = 29.8 bits (67), Expect = 0.86
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 82  QKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLEVLGSFL 126
           Q+ S +  TLE+ G+       L  ++ Q +SREHL+ EVLG  L
Sbjct: 146 QEASFDGQTLELTGTEFTLLYLLAQHLGQVVSREHLSQEVLGKRL 190


>gnl|CDD|238637 cd01312, Met_dep_hydrolase_D, Metallo-dependent hydrolases,
           subgroup D is part of the superfamily of
           metallo-dependent hydrolases, a large group of proteins
           that show conservation in their 3-dimensional fold (TIM
           barrel) and in details of their active site. The vast
           majority of the members have a conserved metal binding
           site, involving four histidines and one aspartic acid
           residue. In the common reaction mechanism, the metal ion
           (or ions) deprotonate a water molecule for a
           nucleophilic attack on the substrate. The function of
           this subgroup is unknown.
          Length = 381

 Score = 28.2 bits (63), Expect = 4.1
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 152 LFNPGLWIHAPAPVQSRLYAYLGTEFLADTAVYSNVRRVSTILQTMHTLKFY 203
           LF P +  HAP  V   L      + L D A   N+   +  L++    ++ 
Sbjct: 147 LFIPAISPHAPYSVHPELA-----QDLIDLAKKLNLPLSTHFLESKEEREWL 193


>gnl|CDD|236346 PRK08898, PRK08898, coproporphyrinogen III oxidase; Provisional.
          Length = 394

 Score = 27.6 bits (62), Expect = 5.6
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 9/39 (23%)

Query: 54  NQGHEDCLSTVQQHIIQNRGFLAISYMLQKLSREHLTLE 92
            Q  ++ L+ V+          A+++    LS  HLTLE
Sbjct: 184 GQTLDEALADVET---------ALAFGPPHLSLYHLTLE 213


>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
          Length = 1119

 Score = 27.8 bits (62), Expect = 6.1
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 32  RDILEPPPMLPRALSPPLTQNNNQGHEDCLSTVQQHIIQNRGFLAISYMLQKLSREHLTL 91
           ++  E P  L +  S  L +N +   +    TV  H I++RG L   Y+    S + LT+
Sbjct: 639 KETEEIPTKLYKLSSDSLKENMDLDSDGGSVTVLVHPIESRGIL---YLDFAFSLDSLTV 695

Query: 92  EVLGSFLRFTKHLVTYMLQKLSREHLT 118
           + L     F   L      KLS E  T
Sbjct: 696 DELKYLNLFKALLKENGTDKLSSEEFT 722


>gnl|CDD|218534 pfam05278, PEARLI-4, Arabidopsis phospholipase-like protein
          (PEARLI 4).  This family contains several
          phospholipase-like proteins from Arabidopsis thaliana
          which are homologous to PEARLI 4.
          Length = 234

 Score = 26.7 bits (59), Expect = 9.1
 Identities = 15/36 (41%), Positives = 18/36 (50%)

Query: 61 LSTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGS 96
          +ST  Q II   G +A +  LQ LS     LE L S
Sbjct: 63 VSTTLQAIIDKHGDIASNSKLQSLSTRSYYLECLAS 98


>gnl|CDD|206563 pfam14395, COOH-NH2_lig, Phage phiEco32-like COOH.NH2 ligase-type
           2.  A family of COOH-NH2 ligases/GCS superfamily found
           in the neighborhood of YheC/D-like ATP-grasp and the
           CotE family of proteins in the firmicutes. Contextual
           analysis suggests that it might be involved in cell wall
           modification and spore coat biosynthesis.
          Length = 261

 Score = 26.5 bits (59), Expect = 9.9
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)

Query: 136 LTPNSELLLKQALDHILFNPGLWIHAPAPVQSR--LYAYLG 174
           +     LL  +ALD+ L  P L +  P   + R   Y +LG
Sbjct: 106 VPLTLRLL--RALDNYLALPLLLVEDPHRARRRRPRYGFLG 144


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.138    0.416 

Gapped
Lambda     K      H
   0.267   0.0707    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,452,295
Number of extensions: 1062071
Number of successful extensions: 1027
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 12
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (25.8 bits)