RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10493
(226 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 47/228 (20%), Positives = 69/228 (30%), Gaps = 68/228 (29%)
Query: 9 QRKAQFLSLAVVYFISVLMVSKYRDILEPPPMLP-RALSPPLTQNNNQGHEDCLSTVQQH 67
SL S+L S + P PML L+ VQ +
Sbjct: 311 YEAYPNTSLP----PSILEDSLENNEGVPSPMLSISNLT--------------QEQVQDY 352
Query: 68 IIQNRGFL------AISYMLQKL--SREHL-------TLEVLGSFLRFTKHLVTYMLQ-- 110
+ + L IS L ++L +L L LR K + + Q
Sbjct: 353 VNKTNSHLPAGKQVEIS-----LVNGAKNLVVSGPPQSLYGLNLTLRKAK-APSGLDQSR 406
Query: 111 -KLSREHLTLEVLGSFLRFTKHLVTCLTP-NSELLLKQALDHI---LFNPGLWIHAPA-- 163
S L FL V P +S LL A D I L + +A
Sbjct: 407 IPFSERKLKFSN--RFLP-----VAS--PFHSH-LLVPASDLINKDLVKNNVSFNAKDIQ 456
Query: 164 -PVQS-------RLYAYLGTEFLADTAVYSNVR-RVSTILQTMHTLKF 202
PV R+ + +E + D + V+ +T + H L F
Sbjct: 457 IPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
Score = 38.5 bits (89), Expect = 0.002
Identities = 28/167 (16%), Positives = 49/167 (29%), Gaps = 50/167 (29%)
Query: 91 LEVLGSFLRFTKHLVTYMLQKLSREHLTLEVLGSFLR-FTK----H-LVTCLTPNSELLL 144
E++G FL + LV + + + L F + + H L L ++ L
Sbjct: 58 AELVGKFLGYVSSLVE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 145 KQALDHILF----------------NPGLWIHAPAPVQSRLYAYLG----TE--F--LAD 180
+ + I N L+ ++L A G T+ F L D
Sbjct: 117 VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTDDYFEELRD 175
Query: 181 T-AVYSN-----VRRVSTILQTM------------HTLKFYYWVVNP 209
Y ++ + L + L W+ NP
Sbjct: 176 LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Score = 30.4 bits (68), Expect = 0.60
Identities = 42/251 (16%), Positives = 74/251 (29%), Gaps = 81/251 (32%)
Query: 12 AQFLSLAVVYFISVLM----VSKYRDILEPPPMLPRALSPPLTQNN-------NQGHEDC 60
+FL ++S L+ V ++ +L L + L N+ D
Sbjct: 62 GKFLG-----YVSSLVEPSKVGQFDQVLNL--CLTEFENCYLEGNDIHALAAKLLQENDT 114
Query: 61 LSTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLE 120
+ +I+N A + ++ S L + + + L
Sbjct: 115 TLVKTKELIKNY-ITARIMAKRPFDKKS------NSAL----------FRAVGEGNAQLV 157
Query: 121 VL----GS----F--LR--FT--KHLVTCLTPNSELLLKQALDH-----ILFNPGL---- 157
+ G+ F LR + LV L S L + + +F GL
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 158 WIHAP--APVQSRLYAYLGTEFLADTAVYSNVRRVSTILQTMHTLKFYYWVVNPRLKT-G 214
W+ P P ++L + S + ++Q H Y V K G
Sbjct: 218 WLENPSNTP---------DKDYLL-SIPISCP--LIGVIQLAH-----YVVT---AKLLG 257
Query: 215 VIPKGLGRFLC 225
P L +L
Sbjct: 258 FTPGELRSYLK 268
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.002
Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 68/233 (29%)
Query: 24 SVLMVSKYRDILEPPPMLPRA--LSPPLTQNNNQGHEDCLSTVQQHIIQNRGFLAISYML 81
S+L + I+ + L L + + + V + N FL
Sbjct: 44 SILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR---INYKFLMSPIKT 100
Query: 82 QKLSREHLTLE-------VLGSFLRFTKHLVT--YMLQKLSREHLTLEVLGSFLRFTKHL 132
++ +T + F K+ V+ KL R+ L LE LR K++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL-RQAL-LE-----LRPAKNV 153
Query: 133 V---------TCLTPNSELLLKQALDHILFNPGLWIHAPAPVQSRLYAYLGTEFLADTAV 183
+ T + ++ L + + W++ L
Sbjct: 154 LIDGVLGSGKTWVA--LDVCLSYKVQCKMDFKIFWLN------------LK--------- 190
Query: 184 YSNVRRVSTILQTMHTLKFYYWVV-----------NPRLKTGVIPKGLGRFLC 225
N T+L+ + L Y + N +L+ I L R L
Sbjct: 191 --NCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Score = 37.9 bits (87), Expect = 0.002
Identities = 33/259 (12%), Positives = 74/259 (28%), Gaps = 85/259 (32%)
Query: 20 VYFISVLMVSKYRDILEPPPMLPRALSPPLTQNNNQG----------------------H 57
++++++ + +LE L + P T ++ +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 58 EDCL-----------------------STVQQHIIQNRGFLAISYMLQKLSREHLTL-EV 93
E+CL +T + + +++ LT EV
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 94 LGSFLRFTKHLVTYMLQKLSREH-----LTLEVLGSFLR-------FTKHL--------- 132
L++ Q L RE L ++ +R KH+
Sbjct: 304 KSLLLKYLDCRP----QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 133 ---VTCLTPNSELLLKQALDHI-LFNPGLWIHAPAPVQSRLYAYLGTE----FLADTAVY 184
+ L P ++ D + +F P I P + S ++ + + Y
Sbjct: 360 ESSLNVLEPA---EYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 185 SNV-RRVSTILQTMHTLKF 202
S V ++ ++ ++
Sbjct: 415 SLVEKQPKESTISIPSIYL 433
Score = 29.8 bits (66), Expect = 0.77
Identities = 27/157 (17%), Positives = 49/157 (31%), Gaps = 36/157 (22%)
Query: 27 MVSKYRDILEPPPMLPRALSPPLTQN---NNQGHEDCLSTVQQH---IIQNRGFLAISYM 80
+V Y L PP ++ GH L ++ + FL ++
Sbjct: 449 IVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRMVFLDFRFL 503
Query: 81 LQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLT---------LEVLGSFL-RFTK 130
QK+ + GS L + L Y + ++ + + FL + +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFY------KPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 131 HLVTCLTPNSELLLKQALDHI-LFNPGLWIHAPAPVQ 166
+L+ ++LL I L I A Q
Sbjct: 558 NLICS--KYTDLL------RIALMAEDEAIFEEAHKQ 586
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein
structure initiative, center for eukaryotic structural
genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP:
d.23.1.2 PDB: 2q4m_A
Length = 217
Score = 26.6 bits (58), Expect = 6.4
Identities = 10/67 (14%), Positives = 23/67 (34%)
Query: 61 LSTVQQHIIQNRGFLAISYMLQKLSREHLTLEVLGSFLRFTKHLVTYMLQKLSREHLTLE 120
+ T+++ ++ + R+ L S L+ L ++ +
Sbjct: 88 VVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFR 147
Query: 121 VLGSFLR 127
V GS+L
Sbjct: 148 VKGSWLE 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.138 0.416
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,275,394
Number of extensions: 178583
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 390
Number of HSP's successfully gapped: 9
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.5 bits)