BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10494
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95
++ HP + FIT GG + EA++ +P +GIP F DQ N+ + G ++F
Sbjct: 81 LLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNTXS 140
Query: 96 TETLFENIQEILNNYDRYKKAVKRASDI 123
+ L ++ ++N+ YK+ V + S I
Sbjct: 141 STDLLNALKRVIND-PSYKENVXKLSRI 167
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFEDI 94
++AH + F+T G SL E+V VP+I PFFGDQ N +++ L IG +E
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVF 397
Query: 95 HTETLFENIQEILNNYDRYK-----KAVKRASD 122
L +IL+ K +A++ +D
Sbjct: 398 TKSGLMSCFDQILSQEKGKKLRENLRALRETAD 430
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK-IIRRLGIGSYMEFE-D 93
++ HP+I F+T G S E++ VP++ PFF DQ + + I IG ME + +
Sbjct: 366 VLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIG--MEIDTN 423
Query: 94 IHTETLFENIQEILNNYDRYKKAVKRASDISK 125
+ E L + I E++ D+ KK ++A ++ K
Sbjct: 424 VKREELAKLINEVIAG-DKGKKMKQKAMELKK 454
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 45 FITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQ 104
FIT G+ S EA+ VP++ +P +Q N + I LG+G ++ + + E L E +
Sbjct: 325 FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREAVL 384
Query: 105 EILNN 109
+ ++
Sbjct: 385 AVASD 389
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYN---VKIIRRLGIG 86
V I+ H ++ +F+T G S+ E + VP+I PFFGDQ N + + +G+G
Sbjct: 338 VEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGVG 393
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
LF+T G QE + P+I +P DQ N +++ LG+ + E+ + L E
Sbjct: 302 LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRETA 361
Query: 104 QEILNNYDRYKK------------AVKRASDISKTQMMS 130
++++ + ++ +RA+D+ + ++ +
Sbjct: 362 LALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPA 400
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV-KIIRRLGIG-----S 87
V ++AH I F++ G S+ E++ F VP++ P + +Q N ++++ G+G
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 88 YMEFED-IHTETLFENIQEILNNYDRYKKAVKRASDISKTQMM 129
Y + D + E + + ++++++ K V+ ++S+ ++
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV-KIIRRLGIG-----S 87
V ++AH I F++ G S+ E++ F VP++ P + +Q N ++++ G+G
Sbjct: 343 VEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVD 402
Query: 88 YMEFED-IHTETLFENIQEILNNYDRYKKAVKRASDISKTQMM 129
Y + D + E + + ++++++ K V+ ++S+ ++
Sbjct: 403 YRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMKEMSRNAVV 445
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 80
++AHP+ F+T G S E+V +P+I P + +Q N ++
Sbjct: 352 VLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL 396
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 40 PNIKLF------ITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFED 93
P++K+ +T GG +L EA+++ P++ +P D + + +LG+G+ + E
Sbjct: 306 PHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEK 365
Query: 94 IHTETLF 100
+TL
Sbjct: 366 ADGDTLL 372
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 40 PNIKLF------ITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFED 93
P++K+ +T GG +L EA+++ P++ +P D + + +LG+G+ + E
Sbjct: 306 PHVKVLEQATVCVTHGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVDQLGLGAVLPGEK 365
Query: 94 IHTETLF 100
+TL
Sbjct: 366 ADGDTLL 372
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 82 RLGIGSYMEFEDIHTETLFENIQEILNNYDRYK 114
R+G YM+FEDI + +N++E++N + K
Sbjct: 353 RIGHMGYMKFEDIQ--EMLDNLREVINELKKQK 383
>pdb|1NST|A Chain A, The Sulfotransferase Domain Of Human Haparin Sulfate N-
DeacetylaseN-Sulfotransferase
Length = 325
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 11/89 (12%)
Query: 67 IPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISK- 125
I FF NY+ GI YMEF I + T + E NY + A +RA+ +
Sbjct: 86 IQFFNGHNYHK------GIDWYMEFFPIPSNTTSDFYFEKSANYFDSEVAPRRAAALLPK 139
Query: 126 ----TQMMSPRDTAVWWVEYLLKADGNVS 150
T +++P D A W ++ D V+
Sbjct: 140 AKVLTILINPADRAYSWYQHQRAHDDPVA 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,025,938
Number of Sequences: 62578
Number of extensions: 240010
Number of successful extensions: 561
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 29
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)