Query psy10494
Match_columns 203
No_of_seqs 196 out of 1842
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:35:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 100.0 3.5E-51 7.6E-56 369.4 11.4 183 13-202 318-500 (500)
2 PHA03392 egt ecdysteroid UDP-g 100.0 7.4E-43 1.6E-47 316.4 19.1 153 15-174 343-496 (507)
3 KOG1192|consensus 100.0 5.9E-32 1.3E-36 243.5 16.7 147 17-172 334-481 (496)
4 PLN02670 transferase, transfer 99.9 4E-26 8.6E-31 205.2 13.4 130 15-145 327-466 (472)
5 PLN02554 UDP-glycosyltransfera 99.9 4.8E-25 1E-29 199.2 12.4 123 16-144 340-478 (481)
6 PLN02208 glycosyltransferase f 99.9 1.9E-24 4.2E-29 193.2 13.8 115 28-143 316-438 (442)
7 PLN02562 UDP-glycosyltransfera 99.9 4.9E-24 1.1E-28 191.0 12.8 104 16-127 326-430 (448)
8 COG1819 Glycosyl transferases, 99.9 9E-24 1.9E-28 187.3 13.7 126 12-147 278-403 (406)
9 PLN02207 UDP-glycosyltransfera 99.9 6.3E-24 1.4E-28 190.8 12.6 105 16-126 330-444 (468)
10 PLN02764 glycosyltransferase f 99.9 1.4E-23 3E-28 187.8 14.2 132 15-147 305-448 (453)
11 PLN02410 UDP-glucoronosyl/UDP- 99.9 1.4E-23 3E-28 188.1 13.7 105 16-126 322-429 (451)
12 PLN03004 UDP-glycosyltransfera 99.9 9.9E-24 2.1E-28 188.9 11.0 103 18-126 334-440 (451)
13 PLN02555 limonoid glucosyltran 99.9 7.6E-23 1.6E-27 184.5 14.4 126 15-145 334-470 (480)
14 PLN02992 coniferyl-alcohol glu 99.9 6.9E-23 1.5E-27 184.6 13.8 102 26-127 341-447 (481)
15 PLN02167 UDP-glycosyltransfera 99.9 7.8E-23 1.7E-27 184.6 12.9 100 27-126 344-451 (475)
16 PLN00414 glycosyltransferase f 99.9 1.2E-22 2.6E-27 181.9 13.6 132 15-147 300-443 (446)
17 PLN03007 UDP-glucosyltransfera 99.9 1.3E-22 2.8E-27 183.4 12.8 105 17-127 344-460 (482)
18 PLN02210 UDP-glucosyl transfer 99.9 7.3E-23 1.6E-27 183.8 10.8 99 28-126 329-434 (456)
19 PLN02173 UDP-glucosyl transfer 99.9 2.6E-22 5.6E-27 179.7 14.0 105 17-126 316-427 (449)
20 PLN02863 UDP-glucoronosyl/UDP- 99.9 2.9E-22 6.2E-27 180.8 14.1 118 28-146 348-473 (477)
21 PLN02152 indole-3-acetate beta 99.9 2.7E-22 5.9E-27 179.8 12.9 106 16-126 325-435 (455)
22 PLN02448 UDP-glycosyltransfera 99.9 4.4E-22 9.4E-27 179.1 13.6 105 18-127 323-437 (459)
23 PLN00164 glucosyltransferase; 99.9 6.2E-22 1.3E-26 178.9 13.0 120 25-144 341-473 (480)
24 TIGR01426 MGT glycosyltransfer 99.9 1.6E-21 3.5E-26 171.2 13.6 123 12-144 269-391 (392)
25 PLN03015 UDP-glucosyl transfer 99.9 8.8E-22 1.9E-26 176.8 11.6 112 15-126 323-447 (470)
26 cd03784 GT1_Gtf_like This fami 99.8 8.8E-21 1.9E-25 166.6 11.8 116 15-141 285-400 (401)
27 PLN02534 UDP-glycosyltransfera 99.8 6.9E-20 1.5E-24 165.6 14.4 118 28-145 349-487 (491)
28 PF04101 Glyco_tran_28_C: Glyc 99.5 2.8E-15 6E-20 117.1 2.9 92 17-116 54-150 (167)
29 PRK12446 undecaprenyldiphospho 99.4 8.9E-13 1.9E-17 115.1 12.1 105 28-140 239-350 (352)
30 TIGR00661 MJ1255 conserved hyp 99.4 1.3E-13 2.8E-18 118.5 6.2 89 15-114 226-318 (321)
31 PRK00726 murG undecaprenyldiph 99.4 5.2E-12 1.1E-16 109.3 11.6 112 28-144 240-356 (357)
32 PF13528 Glyco_trans_1_3: Glyc 99.4 1.9E-12 4.2E-17 110.2 7.8 83 17-106 231-317 (318)
33 COG0707 MurG UDP-N-acetylgluco 99.3 1.5E-11 3.2E-16 107.6 12.9 111 28-143 240-355 (357)
34 cd03785 GT1_MurG MurG is an N- 99.1 4.8E-10 1E-14 96.3 10.7 110 17-136 234-348 (350)
35 TIGR01133 murG undecaprenyldip 99.0 3.1E-09 6.8E-14 91.2 11.7 101 32-137 243-346 (348)
36 PRK13608 diacylglycerol glucos 99.0 6E-09 1.3E-13 92.0 13.6 108 28-144 261-370 (391)
37 PRK13609 diacylglycerol glucos 99.0 1E-08 2.2E-13 89.7 12.9 113 17-143 255-369 (380)
38 PLN02605 monogalactosyldiacylg 98.7 1.3E-07 2.9E-12 83.0 12.2 106 28-141 270-377 (382)
39 TIGR03492 conserved hypothetic 98.6 5.4E-07 1.2E-11 80.0 11.3 99 34-141 291-394 (396)
40 COG4671 Predicted glycosyl tra 98.4 6E-07 1.3E-11 77.5 6.6 85 18-109 277-365 (400)
41 PRK00025 lpxB lipid-A-disaccha 98.4 1.9E-06 4E-11 75.1 8.8 107 34-144 256-376 (380)
42 TIGR00215 lpxB lipid-A-disacch 98.3 1.1E-06 2.4E-11 77.7 6.7 103 33-139 261-382 (385)
43 TIGR03590 PseG pseudaminic aci 98.3 4.4E-07 9.4E-12 76.9 2.7 55 17-79 223-278 (279)
44 cd03814 GT1_like_2 This family 98.2 1.6E-05 3.5E-10 67.1 11.1 109 15-138 244-359 (364)
45 PRK05749 3-deoxy-D-manno-octul 98.1 6.7E-05 1.4E-09 66.7 12.1 101 35-142 315-420 (425)
46 KOG3349|consensus 98.0 9.2E-06 2E-10 62.3 5.0 63 29-93 69-136 (170)
47 cd03801 GT1_YqgM_like This fam 97.9 8.1E-05 1.8E-09 61.9 9.6 110 16-139 254-370 (374)
48 cd05844 GT1_like_7 Glycosyltra 97.9 0.00011 2.4E-09 63.0 10.4 93 16-122 243-348 (367)
49 cd03800 GT1_Sucrose_synthase T 97.9 0.00016 3.5E-09 62.4 10.8 94 16-123 281-381 (398)
50 cd03823 GT1_ExpE7_like This fa 97.8 0.00023 4.9E-09 59.8 11.2 94 16-123 241-342 (359)
51 cd03821 GT1_Bme6_like This fam 97.8 0.00022 4.9E-09 59.9 10.8 103 16-134 260-369 (375)
52 TIGR00236 wecB UDP-N-acetylglu 97.8 0.00012 2.6E-09 63.7 9.3 100 28-140 260-362 (365)
53 cd03795 GT1_like_4 This family 97.8 0.00021 4.5E-09 60.6 10.5 95 16-124 242-346 (357)
54 PRK15427 colanic acid biosynth 97.8 0.00031 6.8E-09 62.4 11.5 110 16-139 277-400 (406)
55 cd03794 GT1_wbuB_like This fam 97.7 0.00021 4.5E-09 60.3 9.2 96 17-126 274-381 (394)
56 cd03798 GT1_wlbH_like This fam 97.7 0.00038 8.2E-09 58.2 10.5 84 16-113 257-347 (377)
57 PF00534 Glycos_transf_1: Glyc 97.7 0.00024 5.3E-09 54.6 8.6 94 16-123 71-171 (172)
58 cd03822 GT1_ecORF704_like This 97.7 0.00042 9E-09 58.6 10.4 109 16-140 245-363 (366)
59 PRK14089 ipid-A-disaccharide s 97.6 0.00012 2.6E-09 64.0 6.5 99 34-140 230-345 (347)
60 cd03820 GT1_amsD_like This fam 97.6 0.00075 1.6E-08 55.9 10.9 95 34-138 247-346 (348)
61 TIGR03449 mycothiol_MshA UDP-N 97.6 0.0013 2.9E-08 57.5 12.3 109 17-140 282-397 (405)
62 COG1519 KdtA 3-deoxy-D-manno-o 97.6 0.00051 1.1E-08 60.9 9.2 90 45-140 327-416 (419)
63 cd03817 GT1_UGDG_like This fam 97.5 0.00046 9.9E-09 58.1 8.5 88 16-118 257-351 (374)
64 cd04946 GT1_AmsK_like This fam 97.5 0.0011 2.3E-08 58.9 11.2 91 28-124 294-391 (407)
65 cd03799 GT1_amsK_like This is 97.5 0.00077 1.7E-08 57.1 9.7 93 16-122 234-339 (355)
66 COG5017 Uncharacterized conser 97.5 0.00074 1.6E-08 51.2 8.1 61 29-91 54-123 (161)
67 PRK15484 lipopolysaccharide 1, 97.5 0.002 4.4E-08 56.6 12.1 87 16-115 255-349 (380)
68 cd04962 GT1_like_5 This family 97.5 0.0017 3.7E-08 55.7 11.2 111 17-141 252-367 (371)
69 cd03808 GT1_cap1E_like This fa 97.5 0.0014 3.1E-08 54.5 10.5 88 28-124 251-343 (359)
70 TIGR02149 glgA_Coryne glycogen 97.4 0.0043 9.4E-08 53.7 12.7 106 28-140 266-382 (388)
71 cd03807 GT1_WbnK_like This fam 97.4 0.0021 4.5E-08 53.7 10.3 77 34-121 263-343 (365)
72 cd03818 GT1_ExpC_like This fam 97.4 0.0013 2.7E-08 57.8 9.2 88 28-124 286-380 (396)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 97.3 0.00033 7.3E-09 60.4 5.4 80 28-118 263-345 (363)
74 cd03825 GT1_wcfI_like This fam 97.3 0.0035 7.7E-08 53.2 11.3 88 28-124 249-344 (365)
75 COG3980 spsG Spore coat polysa 97.3 0.00055 1.2E-08 57.9 5.9 84 36-124 224-307 (318)
76 TIGR03088 stp2 sugar transfera 97.3 0.0045 9.8E-08 53.5 11.9 98 34-140 267-368 (374)
77 cd03804 GT1_wbaZ_like This fam 97.2 0.00089 1.9E-08 57.4 6.9 94 15-122 239-339 (351)
78 cd04949 GT1_gtfA_like This fam 97.2 0.002 4.3E-08 55.7 8.5 95 16-123 259-358 (372)
79 cd03809 GT1_mtfB_like This fam 97.2 0.00075 1.6E-08 57.0 5.5 94 15-126 250-352 (365)
80 TIGR02472 sucr_P_syn_N sucrose 97.1 0.0059 1.3E-07 54.7 11.3 89 28-123 322-419 (439)
81 cd04951 GT1_WbdM_like This fam 97.1 0.0025 5.5E-08 54.0 7.8 107 17-139 244-355 (360)
82 PLN02871 UDP-sulfoquinovose:DA 97.0 0.012 2.7E-07 53.0 12.2 87 28-123 317-413 (465)
83 PRK09814 beta-1,6-galactofuran 97.0 0.0047 1E-07 53.3 8.8 100 15-127 204-319 (333)
84 TIGR03087 stp1 sugar transfera 96.9 0.0083 1.8E-07 52.7 10.3 86 28-124 285-376 (397)
85 PRK09922 UDP-D-galactose:(gluc 96.9 0.0088 1.9E-07 51.8 10.2 83 16-112 234-326 (359)
86 cd03805 GT1_ALG2_like This fam 96.9 0.0095 2.1E-07 51.6 10.2 93 16-123 278-377 (392)
87 PRK10307 putative glycosyl tra 96.8 0.027 5.8E-07 49.6 12.6 95 28-131 289-394 (412)
88 cd03813 GT1_like_3 This family 96.8 0.014 3.1E-07 52.8 11.0 94 16-123 352-455 (475)
89 cd03811 GT1_WabH_like This fam 96.8 0.007 1.5E-07 50.1 8.3 90 16-119 244-341 (353)
90 cd04955 GT1_like_6 This family 96.7 0.0097 2.1E-07 50.6 8.5 107 15-139 245-359 (363)
91 cd03812 GT1_CapH_like This fam 96.7 0.0082 1.8E-07 51.0 8.0 93 16-123 247-344 (358)
92 cd03792 GT1_Trehalose_phosphor 96.6 0.026 5.7E-07 49.0 11.0 103 28-141 257-368 (372)
93 PF13524 Glyco_trans_1_2: Glyc 96.6 0.027 5.9E-07 39.0 8.8 82 48-139 9-91 (92)
94 cd03816 GT1_ALG1_like This fam 96.5 0.021 4.5E-07 50.8 9.7 72 28-109 300-381 (415)
95 TIGR02918 accessory Sec system 96.3 0.078 1.7E-06 48.7 12.4 107 28-142 381-497 (500)
96 cd03819 GT1_WavL_like This fam 96.3 0.046 1E-06 46.3 10.3 90 16-119 244-340 (355)
97 cd03796 GT1_PIG-A_like This fa 96.2 0.045 9.7E-07 48.1 9.9 78 17-109 249-333 (398)
98 PRK15179 Vi polysaccharide bio 96.0 0.076 1.6E-06 50.7 10.7 93 17-121 573-674 (694)
99 PRK10017 colanic acid biosynth 95.9 0.14 3E-06 46.2 11.5 86 35-126 323-409 (426)
100 TIGR02468 sucrsPsyn_pln sucros 95.8 0.15 3.3E-06 50.6 12.2 109 28-144 553-670 (1050)
101 cd03802 GT1_AviGT4_like This f 95.7 0.12 2.6E-06 43.3 10.0 102 17-140 223-332 (335)
102 PLN02275 transferase, transfer 95.6 0.045 9.7E-07 47.9 7.4 70 28-107 292-371 (371)
103 PHA01633 putative glycosyl tra 95.6 0.084 1.8E-06 46.1 8.8 88 16-109 199-307 (335)
104 PF04007 DUF354: Protein of un 95.5 0.15 3.2E-06 44.6 9.8 93 33-143 242-334 (335)
105 TIGR03713 acc_sec_asp1 accesso 95.3 0.071 1.5E-06 49.2 7.7 97 28-139 414-516 (519)
106 PF02350 Epimerase_2: UDP-N-ac 95.3 0.046 9.9E-07 47.8 6.1 98 28-139 244-345 (346)
107 PLN02949 transferase, transfer 95.1 0.14 3.1E-06 46.5 9.1 86 16-116 333-429 (463)
108 COG0381 WecB UDP-N-acetylgluco 95.1 0.095 2.1E-06 46.3 7.5 106 27-145 269-374 (383)
109 PF13844 Glyco_transf_41: Glyc 95.0 0.12 2.6E-06 47.0 8.2 116 24-143 343-464 (468)
110 PF13692 Glyco_trans_1_4: Glyc 95.0 0.033 7.2E-07 40.8 3.8 78 17-109 52-135 (135)
111 cd04950 GT1_like_1 Glycosyltra 94.8 0.58 1.3E-05 40.8 11.8 75 18-109 254-340 (373)
112 cd03806 GT1_ALG11_like This fa 94.6 0.12 2.7E-06 46.0 7.2 80 16-109 303-392 (419)
113 cd03791 GT1_Glycogen_synthase_ 94.4 0.14 2.9E-06 46.1 7.0 99 36-139 367-471 (476)
114 PHA01630 putative group 1 glyc 93.7 0.88 1.9E-05 39.5 10.5 103 31-139 198-325 (331)
115 TIGR02095 glgA glycogen/starch 93.0 1 2.3E-05 40.6 10.2 77 28-108 351-436 (473)
116 PRK15490 Vi polysaccharide bio 92.9 2.1 4.6E-05 40.0 12.0 74 17-103 454-532 (578)
117 PRK14098 glycogen synthase; Pr 92.7 0.65 1.4E-05 42.5 8.4 81 16-107 360-449 (489)
118 TIGR03568 NeuC_NnaA UDP-N-acet 92.5 0.27 5.8E-06 43.2 5.5 69 34-116 276-344 (365)
119 PRK00654 glgA glycogen synthas 92.3 0.9 1.9E-05 41.0 8.7 70 35-108 352-427 (466)
120 PLN00142 sucrose synthase 91.4 2 4.4E-05 41.8 10.5 75 42-123 667-749 (815)
121 PLN02846 digalactosyldiacylgly 91.4 0.96 2.1E-05 41.2 7.8 72 27-109 288-363 (462)
122 TIGR02470 sucr_synth sucrose s 90.8 2.6 5.5E-05 41.0 10.5 75 42-123 644-726 (784)
123 COG0438 RfaG Glycosyltransfera 90.7 5.6 0.00012 32.0 11.3 82 28-118 262-350 (381)
124 cd01635 Glycosyltransferase_GT 90.3 0.42 9.1E-06 37.1 4.1 49 16-71 159-215 (229)
125 PRK10125 putative glycosyl tra 90.3 2.4 5.3E-05 37.7 9.4 61 35-104 302-366 (405)
126 COG4370 Uncharacterized protei 89.9 2.6 5.7E-05 36.6 8.7 98 28-128 282-397 (412)
127 TIGR02400 trehalose_OtsA alpha 89.9 3.5 7.6E-05 37.4 10.2 101 28-143 341-451 (456)
128 PF04464 Glyphos_transf: CDP-G 89.5 0.93 2E-05 39.4 5.9 105 29-140 259-368 (369)
129 PLN02501 digalactosyldiacylgly 88.7 1.4 3.1E-05 42.3 6.8 75 28-114 606-685 (794)
130 TIGR02919 accessory Sec system 87.6 1.6 3.5E-05 39.5 6.3 90 28-126 334-427 (438)
131 PRK04885 ppnK inorganic polyph 85.1 2.2 4.8E-05 36.0 5.5 53 41-109 35-93 (265)
132 PF06506 PrpR_N: Propionate ca 84.6 1.2 2.7E-05 34.9 3.6 33 38-71 31-63 (176)
133 PLN02939 transferase, transfer 83.6 9.3 0.0002 38.0 9.7 86 28-118 842-943 (977)
134 PLN02316 synthase/transferase 83.2 11 0.00023 38.0 10.0 71 35-109 915-998 (1036)
135 cd03788 GT1_TPS Trehalose-6-Ph 82.3 9.2 0.0002 34.6 8.7 71 28-109 346-427 (460)
136 PF02684 LpxB: Lipid-A-disacch 81.7 7.4 0.00016 34.5 7.6 90 32-125 253-355 (373)
137 PRK02155 ppnK NAD(+)/NADH kina 81.0 4 8.7E-05 34.9 5.6 53 41-109 63-119 (291)
138 PRK01021 lpxB lipid-A-disaccha 80.8 11 0.00023 35.7 8.6 88 34-126 483-591 (608)
139 PF06258 Mito_fiss_Elm1: Mitoc 79.9 5.1 0.00011 34.6 5.9 60 28-90 217-281 (311)
140 PRK02649 ppnK inorganic polyph 79.7 4.1 8.9E-05 35.1 5.2 53 41-109 68-124 (305)
141 PRK14077 pnk inorganic polypho 78.3 5.1 0.00011 34.2 5.4 53 41-109 64-120 (287)
142 PRK01911 ppnK inorganic polyph 77.8 5.2 0.00011 34.2 5.3 53 41-109 64-120 (292)
143 KOG4626|consensus 77.7 7.5 0.00016 37.0 6.5 71 43-118 841-912 (966)
144 PRK02231 ppnK inorganic polyph 77.2 5.1 0.00011 34.0 5.0 52 41-108 42-97 (272)
145 PRK14099 glycogen synthase; Pr 76.8 14 0.00031 33.7 8.2 76 41-119 369-456 (485)
146 PRK04539 ppnK inorganic polyph 75.6 5.9 0.00013 34.0 5.0 53 41-109 68-124 (296)
147 PRK03372 ppnK inorganic polyph 75.1 6.5 0.00014 33.9 5.2 53 41-109 72-128 (306)
148 PF05159 Capsule_synth: Capsul 74.7 4.7 0.0001 33.6 4.1 37 28-67 188-224 (269)
149 PRK03501 ppnK inorganic polyph 73.8 8.1 0.00018 32.6 5.4 54 41-109 39-97 (264)
150 PRK01185 ppnK inorganic polyph 73.6 7.6 0.00016 32.9 5.1 53 41-109 52-105 (271)
151 PLN03063 alpha,alpha-trehalose 73.6 13 0.00028 36.4 7.3 86 30-126 363-461 (797)
152 PRK14075 pnk inorganic polypho 72.7 9.6 0.00021 31.9 5.5 54 40-109 40-94 (256)
153 PRK03378 ppnK inorganic polyph 72.6 7.5 0.00016 33.3 4.9 53 41-109 63-119 (292)
154 PF15024 Glyco_transf_18: Glyc 71.8 9.2 0.0002 35.7 5.6 88 12-109 316-430 (559)
155 PRK03708 ppnK inorganic polyph 71.7 6.9 0.00015 33.2 4.5 53 41-109 57-112 (277)
156 cd03793 GT1_Glycogen_synthase_ 71.4 60 0.0013 30.7 10.8 74 33-109 468-552 (590)
157 PRK14501 putative bifunctional 71.1 9.4 0.0002 36.7 5.8 94 28-126 347-446 (726)
158 PLN02935 Bifunctional NADH kin 68.4 12 0.00026 34.6 5.4 53 41-109 262-318 (508)
159 KOG0853|consensus 68.2 3.6 7.9E-05 37.8 2.2 74 43-121 368-444 (495)
160 PRK14076 pnk inorganic polypho 67.0 11 0.00024 35.3 5.2 53 41-109 348-404 (569)
161 PRK01231 ppnK inorganic polyph 66.7 14 0.00029 31.7 5.3 53 41-109 62-118 (295)
162 PLN02929 NADH kinase 66.2 15 0.00032 31.7 5.4 65 41-109 64-137 (301)
163 PF15050 SCIMP: SCIMP protein 63.0 22 0.00047 26.4 4.9 36 159-194 1-37 (133)
164 PF05693 Glycogen_syn: Glycoge 62.2 21 0.00046 33.8 5.9 92 31-123 461-565 (633)
165 smart00096 UTG Uteroglobin. 61.8 36 0.00078 22.7 5.5 50 95-145 17-66 (69)
166 COG3914 Spy Predicted O-linked 59.3 48 0.001 31.3 7.6 61 28-90 494-561 (620)
167 TIGR02398 gluc_glyc_Psyn gluco 59.3 80 0.0017 29.1 9.1 103 27-144 366-478 (487)
168 PRK04761 ppnK inorganic polyph 59.0 22 0.00049 29.6 5.1 29 41-69 25-57 (246)
169 COG0763 LpxB Lipid A disacchar 55.9 43 0.00094 29.8 6.5 98 35-140 260-376 (381)
170 TIGR02836 spore_IV_A stage IV 55.8 87 0.0019 28.7 8.5 86 24-109 116-235 (492)
171 PF05393 Hum_adeno_E3A: Human 54.5 16 0.00034 25.6 2.8 24 166-189 32-55 (94)
172 PF06363 Picorna_P3A: Picornav 54.2 75 0.0016 22.4 8.3 52 93-147 11-70 (100)
173 PLN02727 NAD kinase 53.6 28 0.0006 34.6 5.4 53 41-109 743-799 (986)
174 cd00633 Secretoglobin Secretog 53.0 61 0.0013 21.0 5.6 49 95-144 15-63 (67)
175 PF11628 TCR_zetazeta: T-cell 52.7 32 0.00068 19.5 3.4 19 164-182 5-23 (33)
176 TIGR00725 conserved hypothetic 52.5 21 0.00046 27.5 3.8 42 28-69 78-123 (159)
177 PF02009 Rifin_STEVOR: Rifin/s 49.4 16 0.00034 31.5 2.8 18 177-194 268-285 (299)
178 COG3660 Predicted nucleoside-d 49.1 22 0.00048 30.4 3.5 61 28-90 233-298 (329)
179 PRK13718 conjugal transfer pro 48.7 40 0.00086 23.1 4.0 25 179-203 55-79 (84)
180 PF10661 EssA: WXG100 protein 48.0 29 0.00064 26.6 3.8 20 173-192 125-144 (145)
181 PRK06270 homoserine dehydrogen 46.1 82 0.0018 27.4 6.8 59 32-90 80-150 (341)
182 COG3195 Uncharacterized protei 45.7 1.1E+02 0.0024 24.1 6.6 51 73-123 110-162 (176)
183 PF06570 DUF1129: Protein of u 45.5 1.2E+02 0.0026 24.3 7.2 33 75-109 5-37 (206)
184 PRK15424 propionate catabolism 44.6 98 0.0021 28.9 7.4 34 37-71 60-93 (538)
185 PRK00561 ppnK inorganic polyph 44.6 56 0.0012 27.5 5.3 29 41-69 33-65 (259)
186 TIGR02329 propionate_PrpR prop 43.0 1.2E+02 0.0026 28.2 7.7 45 37-82 50-95 (526)
187 PF01102 Glycophorin_A: Glycop 41.9 35 0.00076 25.4 3.3 26 169-195 66-91 (122)
188 KOG3488|consensus 41.4 80 0.0017 21.2 4.5 11 158-168 35-45 (81)
189 PF11395 DUF2873: Protein of u 41.4 73 0.0016 18.6 4.3 7 168-174 8-14 (43)
190 PF07429 Glyco_transf_56: 4-al 40.3 1E+02 0.0022 27.3 6.3 75 28-108 251-332 (360)
191 PF15086 UPF0542: Uncharacteri 39.6 67 0.0014 21.7 4.0 45 133-193 6-50 (74)
192 PF15106 TMEM156: TMEM156 prot 39.1 50 0.0011 27.0 3.9 38 157-201 174-213 (226)
193 PF00558 Vpu: Vpu protein; In 37.2 52 0.0011 22.7 3.3 19 166-184 3-21 (81)
194 PF09547 Spore_IV_A: Stage IV 36.7 1.9E+02 0.0041 26.6 7.6 74 36-109 141-235 (492)
195 COG5547 Small integral membran 36.1 1.1E+02 0.0023 19.8 4.3 21 159-179 1-21 (62)
196 PF05568 ASFV_J13L: African sw 36.1 95 0.0021 24.0 4.8 10 160-169 25-34 (189)
197 cd07035 TPP_PYR_POX_like Pyrim 35.7 1.8E+02 0.0039 21.5 7.9 29 41-69 59-93 (155)
198 PF12965 DUF3854: Domain of un 35.3 40 0.00087 25.2 2.7 33 36-69 5-37 (130)
199 PF07219 HemY_N: HemY protein 34.5 82 0.0018 22.4 4.2 24 169-192 18-41 (108)
200 COG2327 WcaK Polysaccharide py 34.0 3.5E+02 0.0076 24.3 11.0 77 34-116 280-357 (385)
201 TIGR01477 RIFIN variant surfac 33.7 31 0.00068 30.4 2.2 18 179-196 324-341 (353)
202 COG2011 AbcD ABC-type metal io 33.5 65 0.0014 26.4 3.8 36 161-196 185-220 (222)
203 PF05225 HTH_psq: helix-turn-h 33.5 71 0.0015 19.1 3.2 25 95-119 1-25 (45)
204 PF12669 P12: Virus attachment 33.5 50 0.0011 21.1 2.6 8 188-195 17-24 (58)
205 PRK02645 ppnK inorganic polyph 33.4 49 0.0011 28.4 3.3 29 41-69 57-89 (305)
206 PTZ00046 rifin; Provisional 32.6 37 0.0008 30.0 2.5 18 179-196 329-346 (358)
207 PRK02797 4-alpha-L-fucosyltran 32.2 1.8E+02 0.0039 25.3 6.5 74 28-107 212-292 (322)
208 cd07037 TPP_PYR_MenD Pyrimidin 31.9 64 0.0014 24.9 3.5 29 41-69 60-94 (162)
209 cd01451 vWA_Magnesium_chelatas 31.6 1.7E+02 0.0036 22.4 5.9 47 58-104 129-177 (178)
210 KOG2678|consensus 31.0 3.1E+02 0.0067 22.7 8.6 17 151-167 198-214 (244)
211 PF11346 DUF3149: Protein of u 30.7 1.2E+02 0.0027 18.1 4.8 31 165-195 7-37 (42)
212 PF12689 Acid_PPase: Acid Phos 30.6 77 0.0017 24.8 3.8 47 59-105 119-165 (169)
213 PF04277 OAD_gamma: Oxaloaceta 30.4 1.4E+02 0.0031 19.7 4.7 15 181-195 22-36 (79)
214 PHA02754 hypothetical protein; 29.6 1.1E+02 0.0023 19.8 3.5 25 102-127 6-30 (67)
215 COG4394 Uncharacterized protei 29.6 3.7E+02 0.0081 23.4 7.8 41 24-67 239-282 (370)
216 cd07039 TPP_PYR_POX Pyrimidine 28.8 79 0.0017 24.3 3.5 28 41-68 63-96 (164)
217 PF10933 DUF2827: Protein of u 28.6 4.2E+02 0.0092 23.6 8.3 92 27-134 257-356 (364)
218 PF02038 ATP1G1_PLM_MAT8: ATP1 28.3 72 0.0016 19.9 2.5 23 161-183 8-30 (50)
219 PF10083 DUF2321: Uncharacteri 28.1 1.1E+02 0.0024 23.8 4.1 56 68-127 79-134 (158)
220 PLN03064 alpha,alpha-trehalose 27.9 2.9E+02 0.0062 27.9 7.9 89 30-126 447-545 (934)
221 PF11057 Cortexin: Cortexin of 26.7 1E+02 0.0022 21.0 3.2 21 171-191 32-52 (81)
222 PHA03240 envelope glycoprotein 25.9 83 0.0018 25.9 3.2 21 179-199 225-245 (258)
223 TIGR00732 dprA DNA protecting 25.8 1.6E+02 0.0034 24.0 5.0 39 51-89 171-211 (220)
224 TIGR02193 heptsyl_trn_I lipopo 25.7 1.1E+02 0.0025 25.6 4.3 64 35-107 250-319 (319)
225 PF03918 CcmH: Cytochrome C bi 25.6 32 0.0007 26.4 0.8 20 142-162 84-103 (148)
226 PF15013 CCSMST1: CCSMST1 fami 25.6 52 0.0011 22.5 1.7 15 154-168 23-37 (77)
227 PF01099 Uteroglobin: Uteroglo 25.1 1.5E+02 0.0032 19.2 3.9 48 95-143 15-62 (67)
228 TIGR03147 cyt_nit_nrfF cytochr 24.9 3E+02 0.0065 20.6 8.0 18 144-162 86-103 (126)
229 PRK14116 gpmA phosphoglyceromu 24.9 51 0.0011 26.8 1.9 24 41-64 175-198 (228)
230 PRK13463 phosphatase PhoE; Pro 24.9 57 0.0012 25.8 2.2 24 41-64 144-167 (203)
231 PRK14119 gpmA phosphoglyceromu 24.5 57 0.0012 26.4 2.1 24 41-64 175-198 (228)
232 TIGR03162 ribazole_cobC alpha- 24.4 56 0.0012 24.9 2.0 23 41-63 138-160 (177)
233 PF09753 Use1: Membrane fusion 24.3 1.3E+02 0.0029 24.8 4.3 29 111-140 177-205 (251)
234 PF14350 Beta_protein: Beta pr 24.2 1.1E+02 0.0024 26.5 4.0 47 63-109 99-148 (347)
235 COG0133 TrpB Tryptophan syntha 24.1 2.2E+02 0.0048 25.2 5.6 44 97-142 26-69 (396)
236 PF01513 NAD_kinase: ATP-NAD k 23.9 86 0.0019 26.4 3.2 31 39-69 74-108 (285)
237 PF10854 DUF2649: Protein of u 23.8 2.1E+02 0.0047 18.5 4.3 35 156-190 31-65 (67)
238 TIGR00045 glycerate kinase. Th 23.7 3.2E+02 0.007 24.3 6.8 87 28-122 272-370 (375)
239 TIGR00730 conserved hypothetic 23.3 1.7E+02 0.0036 23.1 4.5 50 35-85 91-153 (178)
240 TIGR00661 MJ1255 conserved hyp 23.0 1E+02 0.0023 26.0 3.6 33 35-67 87-119 (321)
241 PF03641 Lysine_decarbox: Poss 22.8 1.1E+02 0.0024 22.6 3.3 34 35-68 48-91 (133)
242 PRK13057 putative lipid kinase 22.7 96 0.0021 26.0 3.3 30 40-69 49-82 (287)
243 PF04558 tRNA_synt_1c_R1: Glut 22.1 98 0.0021 24.2 2.9 31 74-109 102-132 (164)
244 PF07069 PRRSV_2b: Porcine rep 22.1 2.4E+02 0.0051 18.4 4.3 30 167-196 27-58 (73)
245 TIGR02482 PFKA_ATP 6-phosphofr 22.1 1.1E+02 0.0025 26.2 3.6 35 36-70 86-124 (301)
246 PF05454 DAG1: Dystroglycan (D 22.0 30 0.00065 29.7 0.0 19 183-201 161-179 (290)
247 COG1817 Uncharacterized protei 21.9 3.9E+02 0.0084 23.5 6.7 95 35-146 248-343 (346)
248 TIGR00421 ubiX_pad polyprenyl 21.9 2.5E+02 0.0055 22.0 5.3 35 56-90 107-145 (181)
249 TIGR03848 MSMEG_4193 probable 21.6 86 0.0019 24.7 2.6 25 41-65 145-169 (204)
250 PRK11475 DNA-binding transcrip 21.6 4.2E+02 0.0091 21.1 8.2 53 59-113 66-118 (207)
251 PF06679 DUF1180: Protein of u 21.5 1.2E+02 0.0026 23.7 3.3 22 170-191 99-120 (163)
252 PRK14118 gpmA phosphoglyceromu 21.5 68 0.0015 26.0 2.0 24 41-64 174-197 (227)
253 PRK10342 glycerate kinase I; P 21.2 4.8E+02 0.01 23.3 7.4 90 28-125 273-374 (381)
254 PHA02688 ORF059 IMV protein VP 21.2 2.4E+02 0.0053 24.5 5.3 45 132-180 256-300 (323)
255 PHA00646 hypothetical protein 20.9 1.5E+02 0.0033 19.3 3.1 29 162-190 35-63 (65)
256 PF14851 FAM176: FAM176 family 20.6 1.4E+02 0.0031 23.1 3.5 23 170-192 25-47 (153)
257 PRK12446 undecaprenyldiphospho 20.6 1.2E+02 0.0026 26.3 3.6 33 35-67 85-120 (352)
258 KOG4180|consensus 20.6 50 0.0011 29.0 1.1 27 41-67 105-135 (395)
259 TIGR00147 lipid kinase, YegS/R 20.4 1.1E+02 0.0025 25.5 3.2 30 40-69 56-91 (293)
260 COG0061 nadF NAD kinase [Coenz 20.3 2.4E+02 0.0053 23.8 5.2 52 40-108 54-110 (281)
261 PF11814 DUF3335: Peptidase_C3 20.2 4.6E+02 0.01 21.3 6.5 30 99-130 89-118 (207)
262 PF02481 DNA_processg_A: DNA r 20.0 1.5E+02 0.0032 24.0 3.7 38 51-89 171-210 (212)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=3.5e-51 Score=369.41 Aligned_cols=183 Identities=35% Similarity=0.638 Sum_probs=96.3
Q ss_pred ccccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccC
Q psy10494 13 LINLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFE 92 (203)
Q Consensus 13 ~~~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~ 92 (203)
...+|+|+.+ .+|+||.+||+||++++||||||+||++||+++|||+|++|+++||+.||.++++.|+|+.++..
T Consensus 318 ~~~l~~n~~~-----~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~ 392 (500)
T PF00201_consen 318 PENLPKNVLI-----VKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKN 392 (500)
T ss_dssp GCHHHTTEEE-----ESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGG
T ss_pred cccccceEEE-----eccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEec
Confidence 3568899988 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCCCccHHHHHHHHHHHH
Q psy10494 93 DIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFGLDVYLV 172 (203)
Q Consensus 93 ~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~~~~~l~~~~~~~~~~q~~~lDv~~~ 172 (203)
+++++++.++|+++++| ++|++||++++++++++|.+|.|+|++||||++||+| ++|||+.+.++||||||+|||+++
T Consensus 393 ~~~~~~l~~ai~~vl~~-~~y~~~a~~ls~~~~~~p~~p~~~~~~~ie~v~~~~~-~~~l~~~~~~l~~~~~~~lDv~~~ 470 (500)
T PF00201_consen 393 DLTEEELRAAIREVLEN-PSYKENAKRLSSLFRDRPISPLERAVWWIEYVARHGG-APHLRSPARDLSFYQYYLLDVIAF 470 (500)
T ss_dssp C-SHHHHHHHHHHHHHS-HHHHHHHHHHHHTTT-----------------------------------------------
T ss_pred CCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCC-CcccCChhhcCCHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCccCC
Q psy10494 173 IFSPVILALYGLYRLVLTINRRWSNGKLKS 202 (203)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~ 202 (203)
++++++++++++++++++++|+.+++|+|+
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 500 (500)
T PF00201_consen 471 LLLIILLIIYIIFKICRFVCRKCVKKKKKK 500 (500)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 998888999999999999999987766553
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=7.4e-43 Score=316.42 Aligned_cols=153 Identities=29% Similarity=0.561 Sum_probs=148.7
Q ss_pred ccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCC
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDI 94 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~ 94 (203)
++|+|+.+ .+|+||.+||+||++++||||||.||++||+++|||+|++|+++||+.||++++++|+|+.++..++
T Consensus 343 ~~p~Nv~i-----~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~ 417 (507)
T PHA03392 343 NLPANVLT-----QKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTV 417 (507)
T ss_pred cCCCceEE-----ecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCc
Confidence 67899999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhC-CCCCCCCcCCCCccHHHHHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKAD-GNVSHLQPEYWHLTWYEYFGLDVYLVI 173 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~-~~~~~l~~~~~~~~~~q~~~lDv~~~~ 173 (203)
+++++.++|+++++| ++|+++|+++++.++++|.+|.++|++|+|+++||+ | ++|||+++.+++|||||+|||++++
T Consensus 418 t~~~l~~ai~~vl~~-~~y~~~a~~ls~~~~~~p~~~~~~av~~iE~v~r~~~g-~~~lr~~~~~l~~~qy~~lDv~~~~ 495 (507)
T PHA03392 418 SAAQLVLAIVDVIEN-PKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHG-NTSLKTKAANVSYSDYFMSYILVPL 495 (507)
T ss_pred CHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCCC-cccccccccCCCHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999 9 9999999999999999999998655
Q ss_pred H
Q psy10494 174 F 174 (203)
Q Consensus 174 ~ 174 (203)
+
T Consensus 496 ~ 496 (507)
T PHA03392 496 V 496 (507)
T ss_pred H
Confidence 3
No 3
>KOG1192|consensus
Probab=99.98 E-value=5.9e-32 Score=243.54 Aligned_cols=147 Identities=37% Similarity=0.610 Sum_probs=139.8
Q ss_pred ccccccccccccccCCHHHH-hcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCC
Q psy10494 17 KRNFTKFFFFFFFFFLFVII-IAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~i-L~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~ 95 (203)
+.|+.. .+|+||.++ |+||++++||||||+||++|++++|||++++|+++||+.||+++++.|.|.++...+.+
T Consensus 334 ~~nV~~-----~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~ 408 (496)
T KOG1192|consen 334 RGNVVL-----SKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLV 408 (496)
T ss_pred cCceEE-----ecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcC
Confidence 446777 899999998 59999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCCCCCCCCcCCCCccHHHHHHHHHHHH
Q psy10494 96 TETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFGLDVYLV 172 (203)
Q Consensus 96 ~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~~~~~l~~~~~~~~~~q~~~lDv~~~ 172 (203)
.+.+.+++.+++++ ++|+++++++++.++++|.+| +.+++|+|++.++++ +.++++. .+++|++|+++|++.+
T Consensus 409 ~~~~~~~~~~il~~-~~y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~-~~~l~~~-~~~~~~~~~~~d~~~~ 481 (496)
T KOG1192|consen 409 SEELLEAIKEILEN-EEYKEAAKRLSEILRDQPISP-ELAVKWVEFVARHGG-AKHLKEA-AHLSFIEYGSLDVIAF 481 (496)
T ss_pred cHHHHHHHHHHHcC-hHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCC-CcccCcc-ccCChhhhhhhHHHHH
Confidence 77799999999999 999999999999999999999 999999999999999 9999998 8999999999999976
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=99.94 E-value=4e-26 Score=205.24 Aligned_cols=130 Identities=16% Similarity=0.230 Sum_probs=109.6
Q ss_pred cccccccc----ccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEc
Q psy10494 15 NLKRNFTK----FFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 15 ~lp~n~~~----~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
.+|+|+.. +.+++.+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++.|+|+.++
T Consensus 327 ~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~ 406 (472)
T PLN02670 327 MLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVP 406 (472)
T ss_pred cCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEee
Confidence 46766432 22444799999999999999999999999999999999999999999999999999999999999997
Q ss_pred cC----CCCHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy10494 91 FE----DIHTETLFENIQEILNN--YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKA 145 (203)
Q Consensus 91 ~~----~~~~~~l~~ai~~ll~~--~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~ 145 (203)
.. .++.+++.++|++++.+ +.+|++||+++++.++++| .+.+.|-..+.++.+.
T Consensus 407 ~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~~~-~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 407 RDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGDMD-RNNRYVDELVHYLREN 466 (472)
T ss_pred ccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhCcc-hhHHHHHHHHHHHHHh
Confidence 53 38999999999999977 1389999999999999986 5555555555555443
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.92 E-value=4.8e-25 Score=199.19 Aligned_cols=123 Identities=22% Similarity=0.338 Sum_probs=103.1
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHH-HHHHcCceEEEcc---
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK-IIRRLGIGSYMEF--- 91 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~-~~~~~G~G~~l~~--- 91 (203)
+++|..+ .+|+||.+||+||++++||||||+||+.||+++|||||++|+++||+.||+ +++++|+|+.++.
T Consensus 340 ~~~~g~v-----~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~ 414 (481)
T PLN02554 340 TKDIGKV-----IGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWR 414 (481)
T ss_pred hccCceE-----EeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeecccc
Confidence 3445555 899999999999999999999999999999999999999999999999995 5788999999863
Q ss_pred --------CCCCHHHHHHHHHHHHh-chHHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHH
Q psy10494 92 --------EDIHTETLFENIQEILN-NYDRYKKAVKRASDISKTQ---MMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 92 --------~~~~~~~l~~ai~~ll~-~~~~y~~~a~~~s~~~~~~---p~~~~~~a~~~ie~v~~ 144 (203)
..++.+++.++|+++++ + ++|+++|+++++.+++. .-+........|+.+.+
T Consensus 415 ~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 415 GDLLAGEMETVTAEEIERGIRCLMEQD-SDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred ccccccccCeEcHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 35799999999999996 7 89999999999998853 12233344455655544
No 6
>PLN02208 glycosyltransferase family protein
Probab=99.92 E-value=1.9e-24 Score=193.22 Aligned_cols=115 Identities=17% Similarity=0.242 Sum_probs=99.9
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEccCC---CCHHHHHHHH
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFED---IHTETLFENI 103 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~~~---~~~~~l~~ai 103 (203)
.+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++ +|+|+.++.++ ++.+++.++|
T Consensus 316 ~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai 395 (442)
T PLN02208 316 GGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAI 395 (442)
T ss_pred eccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999998776 99999997654 8999999999
Q ss_pred HHHHhc----hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 104 QEILNN----YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 104 ~~ll~~----~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
++++++ +..++++++++++...+. .+........|+.+.
T Consensus 396 ~~~m~~~~e~g~~~r~~~~~~~~~~~~~-gsS~~~l~~~v~~l~ 438 (442)
T PLN02208 396 KSVMDKDSDLGKLVRSNHTKLKEILVSP-GLLTGYVDKFVEELQ 438 (442)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHH
Confidence 999975 235999999999998763 355555556666553
No 7
>PLN02562 UDP-glycosyltransferase
Probab=99.91 E-value=4.9e-24 Score=191.03 Aligned_cols=104 Identities=14% Similarity=0.245 Sum_probs=96.6
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEccCCC
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFEDI 94 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~~~~ 94 (203)
+++|+.+ .+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++ .|+|+.+. ++
T Consensus 326 ~~~~~~v-----~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~ 398 (448)
T PLN02562 326 VSKQGKV-----VSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GF 398 (448)
T ss_pred hccCEEE-----EecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CC
Confidence 5678877 8999999999999999999999999999999999999999999999999999987 69998774 67
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcC
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~ 127 (203)
+.+++.++|++++++ ++|++||+++++.....
T Consensus 399 ~~~~l~~~v~~~l~~-~~~r~~a~~l~~~~~~~ 430 (448)
T PLN02562 399 GQKEVEEGLRKVMED-SGMGERLMKLRERAMGE 430 (448)
T ss_pred CHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhc
Confidence 999999999999998 99999999999988764
No 8
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.91 E-value=9e-24 Score=187.25 Aligned_cols=126 Identities=25% Similarity=0.360 Sum_probs=119.8
Q ss_pred cccccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 12 GLINLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 12 ~~~~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
.+.++|+|+.+ .+|+||..+|.+ +++||||||+||++|++++|||++++|...||+.||.++++.|+|+.+..
T Consensus 278 ~~~~~p~n~~v-----~~~~p~~~~l~~--ad~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~ 350 (406)
T COG1819 278 TLVNVPDNVIV-----ADYVPQLELLPR--ADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPF 350 (406)
T ss_pred ccccCCCceEE-----ecCCCHHHHhhh--cCEEEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCc
Confidence 57889999999 999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADG 147 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~ 147 (203)
+.++++.+.++|+++|+| ++|+++++++++.++.. .+...+.+++|...+.+.
T Consensus 351 ~~l~~~~l~~av~~vL~~-~~~~~~~~~~~~~~~~~--~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 351 EELTEERLRAAVNEVLAD-DSYRRAAERLAEEFKEE--DGPAKAADLLEEFAREKK 403 (406)
T ss_pred ccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHhhhc--ccHHHHHHHHHHHHhccc
Confidence 999999999999999999 99999999999999996 567889999999887754
No 9
>PLN02207 UDP-glycosyltransferase
Probab=99.91 E-value=6.3e-24 Score=190.83 Aligned_cols=105 Identities=21% Similarity=0.333 Sum_probs=94.4
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEc----
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYME---- 90 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~---- 90 (203)
+++|..+ .+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++ +|+|+.+.
T Consensus 330 ~~~~g~i-----~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~ 404 (468)
T PLN02207 330 VSGRGMI-----CGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYR 404 (468)
T ss_pred cCCCeEE-----EEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccc
Confidence 4555566 8999999999999999999999999999999999999999999999999998876 99999663
Q ss_pred --c-CCCCHHHHHHHHHHHHh--chHHHHHHHHHHHHHhhc
Q psy10494 91 --F-EDIHTETLFENIQEILN--NYDRYKKAVKRASDISKT 126 (203)
Q Consensus 91 --~-~~~~~~~l~~ai~~ll~--~~~~y~~~a~~~s~~~~~ 126 (203)
. +.++.++|.++|++++. + ++||+||+++++.+++
T Consensus 405 ~~~~~~v~~e~i~~av~~vm~~~~-~~~r~~a~~l~~~a~~ 444 (468)
T PLN02207 405 VHSDEIVNANEIETAIRCVMNKDN-NVVRKRVMDISQMIQR 444 (468)
T ss_pred cccCCcccHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHH
Confidence 1 23588999999999997 5 8999999999999885
No 10
>PLN02764 glycosyltransferase family protein
Probab=99.91 E-value=1.4e-23 Score=187.82 Aligned_cols=132 Identities=17% Similarity=0.235 Sum_probs=110.6
Q ss_pred ccccccccc----cccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCceEEE
Q psy10494 15 NLKRNFTKF----FFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYM 89 (203)
Q Consensus 15 ~lp~n~~~~----~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~G~~l 89 (203)
.+|+|+..+ ..++.+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||++++ ..|+|+.+
T Consensus 305 ~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~ 384 (453)
T PLN02764 305 ALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEV 384 (453)
T ss_pred hCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEe
Confidence 467666541 2344699999999999999999999999999999999999999999999999999996 48999887
Q ss_pred ccC---CCCHHHHHHHHHHHHhc----hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q psy10494 90 EFE---DIHTETLFENIQEILNN----YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADG 147 (203)
Q Consensus 90 ~~~---~~~~~~l~~ai~~ll~~----~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~ 147 (203)
..+ .++.+++.+++++++++ +.+++++++++++.+++.. +........|+.+.+..+
T Consensus 385 ~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~~~G-SS~~~l~~lv~~~~~~~~ 448 (453)
T PLN02764 385 AREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASPG-LLTGYVDNFIESLQDLVS 448 (453)
T ss_pred ccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhcc
Confidence 543 58999999999999976 2349999999999998763 455666678888777654
No 11
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.90 E-value=1.4e-23 Score=188.12 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=96.0
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHc-CceEEEccCCC
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL-GIGSYMEFEDI 94 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~-G~G~~l~~~~~ 94 (203)
+++|..+ .+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++. |+|+.+. ..+
T Consensus 322 ~~~~g~v-----~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~ 395 (451)
T PLN02410 322 ISGRGYI-----VKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDL 395 (451)
T ss_pred ccCCeEE-----EccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-Ccc
Confidence 5566666 89999999999999999999999999999999999999999999999999999875 9999997 688
Q ss_pred CHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhhc
Q psy10494 95 HTETLFENIQEILNN--YDRYKKAVKRASDISKT 126 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~--~~~y~~~a~~~s~~~~~ 126 (203)
+.+++.++|++++.+ +++|+++|+++++.++.
T Consensus 396 ~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 396 DRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRA 429 (451)
T ss_pred cHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999976 24799999999988875
No 12
>PLN03004 UDP-glycosyltransferase
Probab=99.90 E-value=9.9e-24 Score=188.89 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=94.9
Q ss_pred cccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEccC---C
Q psy10494 18 RNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFE---D 93 (203)
Q Consensus 18 ~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~~---~ 93 (203)
.|+.+ .+|+||.+||+|+++++||||||+||++||+++|||++++|+++||+.||+++++ .|+|+.++.+ .
T Consensus 334 ~g~~v-----~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~ 408 (451)
T PLN03004 334 KGMVV-----KSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGF 408 (451)
T ss_pred CcEEE-----EeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCc
Confidence 45555 8999999999999999999999999999999999999999999999999999975 7999999754 4
Q ss_pred CCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhc
Q psy10494 94 IHTETLFENIQEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 94 ~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
++.++|.++|++++++ ++|+++++++++..+.
T Consensus 409 ~~~e~l~~av~~vm~~-~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 409 VSSTEVEKRVQEIIGE-CPVRERTMAMKNAAEL 440 (451)
T ss_pred cCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 7999999999999998 9999999999987665
No 13
>PLN02555 limonoid glucosyltransferase
Probab=99.89 E-value=7.6e-23 Score=184.45 Aligned_cols=126 Identities=20% Similarity=0.220 Sum_probs=105.5
Q ss_pred ccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHc-CceEEEc---
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL-GIGSYME--- 90 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~-G~G~~l~--- 90 (203)
++++|..+ .+|+||.+||+||++++||||||+||+.||+++|||++++|+++||+.|++++++. |+|+.+.
T Consensus 334 ~~~~~g~v-----~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~ 408 (480)
T PLN02555 334 KAGDKGKI-----VQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGE 408 (480)
T ss_pred hcCCceEE-----EecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCc
Confidence 35567766 89999999999999999999999999999999999999999999999999999885 9999993
Q ss_pred --cCCCCHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHh
Q psy10494 91 --FEDIHTETLFENIQEILNN--YDRYKKAVKRASDISKTQM---MSPRDTAVWWVEYLLKA 145 (203)
Q Consensus 91 --~~~~~~~~l~~ai~~ll~~--~~~y~~~a~~~s~~~~~~p---~~~~~~a~~~ie~v~~~ 145 (203)
...++.+++.++|++++.+ +.++|+||+++++..++.- -+........|+.+.+.
T Consensus 409 ~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 409 AENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred cccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 3467999999999999965 3689999999999866531 13344555667766554
No 14
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.89 E-value=6.9e-23 Score=184.59 Aligned_cols=102 Identities=25% Similarity=0.345 Sum_probs=91.7
Q ss_pred cccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHH-HHcCceEEEcc--CCCCHHHHHHH
Q psy10494 26 FFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-RRLGIGSYMEF--EDIHTETLFEN 102 (203)
Q Consensus 26 ~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~-~~~G~G~~l~~--~~~~~~~l~~a 102 (203)
++.+|+||.+||+|+++++||||||+||+.||+++|||++++|+++||+.||+++ +++|+|+.++. ..++.+++.++
T Consensus 341 vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~l~~a 420 (481)
T PLN02992 341 VVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDDPKEVISRSKIEAL 420 (481)
T ss_pred EEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecCCCCcccHHHHHHH
Confidence 3389999999999999999999999999999999999999999999999999999 48999999976 34899999999
Q ss_pred HHHHHhc--hHHHHHHHHHHHHHhhcC
Q psy10494 103 IQEILNN--YDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 103 i~~ll~~--~~~y~~~a~~~s~~~~~~ 127 (203)
|++++.+ +..++++++++++..+..
T Consensus 421 v~~vm~~~~g~~~r~~a~~~~~~a~~A 447 (481)
T PLN02992 421 VRKVMVEEEGEEMRRKVKKLRDTAEMS 447 (481)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHH
Confidence 9999976 347888888888876653
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.89 E-value=7.8e-23 Score=184.58 Aligned_cols=100 Identities=22% Similarity=0.412 Sum_probs=90.7
Q ss_pred ccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHH-HHHcCceEEEcc-------CCCCHHH
Q psy10494 27 FFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKI-IRRLGIGSYMEF-------EDIHTET 98 (203)
Q Consensus 27 ~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~-~~~~G~G~~l~~-------~~~~~~~ 98 (203)
+.+|+||.+||+||++++||||||+||++||+++|||||++|+++||+.||++ ++++|+|+.+.. ..++.++
T Consensus 344 v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 423 (475)
T PLN02167 344 VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADE 423 (475)
T ss_pred eeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHH
Confidence 38999999999999999999999999999999999999999999999999976 678999998863 2468999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhhc
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
+.++|++++.+.++|+++|+++++..++
T Consensus 424 l~~av~~~m~~~~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 424 IAGAVRSLMDGEDVPRKKVKEIAEAARK 451 (475)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999997614899999999998776
No 16
>PLN00414 glycosyltransferase family protein
Probab=99.89 E-value=1.2e-22 Score=181.86 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=108.1
Q ss_pred cccccccc----ccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCceEEE
Q psy10494 15 NLKRNFTK----FFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYM 89 (203)
Q Consensus 15 ~lp~n~~~----~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~G~~l 89 (203)
.+|+|+.. +..++.+|+||.+||+|+.+++||||||+||++||+++|||++++|+++||+.||++++ +.|+|+.+
T Consensus 300 ~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~ 379 (446)
T PLN00414 300 ALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKV 379 (446)
T ss_pred hCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEe
Confidence 46776654 22344699999999999999999999999999999999999999999999999999996 69999999
Q ss_pred ccC---CCCHHHHHHHHHHHHhc----hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q psy10494 90 EFE---DIHTETLFENIQEILNN----YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADG 147 (203)
Q Consensus 90 ~~~---~~~~~~l~~ai~~ll~~----~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~ 147 (203)
..+ .++.+++.+++++++.+ +.+++++|+++++.+.+..-. .......|+.+....+
T Consensus 380 ~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~-ss~l~~~v~~~~~~~~ 443 (446)
T PLN00414 380 QREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSPGLL-SGYADKFVEALENEVN 443 (446)
T ss_pred ccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhcc
Confidence 643 38999999999999975 235999999999998765321 3335667777665554
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.89 E-value=1.3e-22 Score=183.45 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=91.2
Q ss_pred ccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH---cCceEEE----
Q psy10494 17 KRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR---LGIGSYM---- 89 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~---~G~G~~l---- 89 (203)
+.|+.+ .+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||+++++ .|+|+..
T Consensus 344 ~~g~~v-----~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 418 (482)
T PLN03007 344 GKGLII-----RGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLV 418 (482)
T ss_pred cCCEEE-----ecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEecccccc
Confidence 345566 8999999999999999999999999999999999999999999999999998863 4554421
Q ss_pred --ccCCCCHHHHHHHHHHHHhchH---HHHHHHHHHHHHhhcC
Q psy10494 90 --EFEDIHTETLFENIQEILNNYD---RYKKAVKRASDISKTQ 127 (203)
Q Consensus 90 --~~~~~~~~~l~~ai~~ll~~~~---~y~~~a~~~s~~~~~~ 127 (203)
+...++.++|.+++++++.+ + +|+++|+++++..++.
T Consensus 419 ~~~~~~~~~~~l~~av~~~m~~-~~~~~~r~~a~~~~~~a~~a 460 (482)
T PLN03007 419 KVKGDFISREKVEKAVREVIVG-EEAEERRLRAKKLAEMAKAA 460 (482)
T ss_pred ccccCcccHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHH
Confidence 33568999999999999987 6 9999999999987763
No 18
>PLN02210 UDP-glucosyl transferase
Probab=99.89 E-value=7.3e-23 Score=183.81 Aligned_cols=99 Identities=21% Similarity=0.353 Sum_probs=91.4
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEccC----CCCHHHHHHH
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFE----DIHTETLFEN 102 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~~----~~~~~~l~~a 102 (203)
.+|+||.+||+|+.+++||||||+||++||+++|||++++|+++||+.||+++++ .|+|+.+... .++.++|.++
T Consensus 329 ~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~a 408 (456)
T PLN02210 329 LEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERC 408 (456)
T ss_pred EecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999998 8999998642 5899999999
Q ss_pred HHHHHhc--hHHHHHHHHHHHHHhhc
Q psy10494 103 IQEILNN--YDRYKKAVKRASDISKT 126 (203)
Q Consensus 103 i~~ll~~--~~~y~~~a~~~s~~~~~ 126 (203)
|++++.+ +.++|+||+++++..+.
T Consensus 409 v~~~m~~~~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 409 IEAVTEGPAAADIRRRAAELKHVARL 434 (456)
T ss_pred HHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 9999976 23599999999988776
No 19
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.88 E-value=2.6e-22 Score=179.70 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=92.6
Q ss_pred ccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEccC---
Q psy10494 17 KRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFE--- 92 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~~--- 92 (203)
++|+.+ .+|+||.+||+||.+++||||||+||++||+++|||++++|+++||+.||+++++ .|+|+.+..+
T Consensus 316 ~~~~~i-----~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~ 390 (449)
T PLN02173 316 KDKSLV-----LKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKES 390 (449)
T ss_pred CCceEE-----eCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccC
Confidence 455666 9999999999999999999999999999999999999999999999999999987 4999888643
Q ss_pred -CCCHHHHHHHHHHHHhc--hHHHHHHHHHHHHHhhc
Q psy10494 93 -DIHTETLFENIQEILNN--YDRYKKAVKRASDISKT 126 (203)
Q Consensus 93 -~~~~~~l~~ai~~ll~~--~~~y~~~a~~~s~~~~~ 126 (203)
.++.+++.+++++++.+ +..++++|+++++..++
T Consensus 391 ~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~ 427 (449)
T PLN02173 391 GIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVK 427 (449)
T ss_pred CcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 25899999999999976 35678888888887774
No 20
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.88 E-value=2.9e-22 Score=180.79 Aligned_cols=118 Identities=18% Similarity=0.173 Sum_probs=100.5
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCceEEEcc---CCCCHHHHHHHH
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYMEF---EDIHTETLFENI 103 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~G~~l~~---~~~~~~~l~~ai 103 (203)
.+|+||.+||+|+++++||||||+||++||+++|||+|++|+++||+.||++++ ++|+|+.+.. ...+.+++.+++
T Consensus 348 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v 427 (477)
T PLN02863 348 RGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVF 427 (477)
T ss_pred cCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999975 5899998853 235889999999
Q ss_pred HHHH-hchHHHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHHhC
Q psy10494 104 QEIL-NNYDRYKKAVKRASDISKTQ---MMSPRDTAVWWVEYLLKAD 146 (203)
Q Consensus 104 ~~ll-~~~~~y~~~a~~~s~~~~~~---p~~~~~~a~~~ie~v~~~~ 146 (203)
++++ ++ ++|++||+++++..++. .-+........|+.+.+.|
T Consensus 428 ~~~m~~~-~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 428 MESVSEN-QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHHhhcc-HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 9998 56 99999999999985542 1234555567777776664
No 21
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.88 E-value=2.7e-22 Score=179.82 Aligned_cols=106 Identities=16% Similarity=0.283 Sum_probs=91.7
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEc--cC
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYME--FE 92 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~--~~ 92 (203)
+++|..+ .+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++ .|+|+.+. .+
T Consensus 325 ~~~~g~v-----~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 399 (455)
T PLN02152 325 LEEVGMI-----VSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSE 399 (455)
T ss_pred ccCCeEE-----EeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcC
Confidence 4556666 8999999999999999999999999999999999999999999999999999988 46666553 23
Q ss_pred -CCCHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhhc
Q psy10494 93 -DIHTETLFENIQEILNN-YDRYKKAVKRASDISKT 126 (203)
Q Consensus 93 -~~~~~~l~~ai~~ll~~-~~~y~~~a~~~s~~~~~ 126 (203)
.++.++|.+++++++++ +.++|++|+++++..++
T Consensus 400 ~~~~~e~l~~av~~vm~~~~~~~r~~a~~~~~~~~~ 435 (455)
T PLN02152 400 GLVERGEIRRCLEAVMEEKSVELRESAEKWKRLAIE 435 (455)
T ss_pred CcCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 35899999999999976 23589999888887765
No 22
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.88 E-value=4.4e-22 Score=179.06 Aligned_cols=105 Identities=22% Similarity=0.265 Sum_probs=94.1
Q ss_pred cccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHH-cCceEEEcc-----
Q psy10494 18 RNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEF----- 91 (203)
Q Consensus 18 ~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~-~G~G~~l~~----- 91 (203)
+|..+ .+|+||.+||+||++++||||||+||++||+++|||++++|+++||+.||+++++ +|+|+.+..
T Consensus 323 ~~~~v-----~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~ 397 (459)
T PLN02448 323 DMGLV-----VPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEE 397 (459)
T ss_pred CCEEE-----eccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccC
Confidence 56666 8999999999999999999999999999999999999999999999999999988 688888752
Q ss_pred CCCCHHHHHHHHHHHHhc----hHHHHHHHHHHHHHhhcC
Q psy10494 92 EDIHTETLFENIQEILNN----YDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~----~~~y~~~a~~~s~~~~~~ 127 (203)
..+++++|.+++++++.+ +.++|++|+++++..+..
T Consensus 398 ~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a 437 (459)
T PLN02448 398 TLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGA 437 (459)
T ss_pred CcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 246999999999999975 248999999999987764
No 23
>PLN00164 glucosyltransferase; Provisional
Probab=99.87 E-value=6.2e-22 Score=178.85 Aligned_cols=120 Identities=14% Similarity=0.229 Sum_probs=97.5
Q ss_pred ccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCceEEEccC-----CCCHHH
Q psy10494 25 FFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYMEFE-----DIHTET 98 (203)
Q Consensus 25 ~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~G~~l~~~-----~~~~~~ 98 (203)
.++.+|+||.+||+|+.+.+||||||+||++||+++|||||++|+++||+.||++++ .+|+|+.+..+ .++.++
T Consensus 341 ~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~ 420 (480)
T PLN00164 341 LVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAE 420 (480)
T ss_pred eEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcCcHHH
Confidence 334799999999999999999999999999999999999999999999999998875 58999988532 368999
Q ss_pred HHHHHHHHHhc----hHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHH
Q psy10494 99 LFENIQEILNN----YDRYKKAVKRASDISKTQM---MSPRDTAVWWVEYLLK 144 (203)
Q Consensus 99 l~~ai~~ll~~----~~~y~~~a~~~s~~~~~~p---~~~~~~a~~~ie~v~~ 144 (203)
+.++|++++.+ +..++++|+++++..++.- -+........|+.+.+
T Consensus 421 l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 421 LERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 99999999965 2457999999998877632 1233444455555543
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.87 E-value=1.6e-21 Score=171.24 Aligned_cols=123 Identities=25% Similarity=0.350 Sum_probs=113.7
Q ss_pred cccccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 12 GLINLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 12 ~~~~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
.+.++|+|+.+ .+|+||.+++++ ++++|||||.+|+.|++++|+|++++|...||..|++++++.|+|+.+..
T Consensus 269 ~~~~~~~~v~~-----~~~~p~~~ll~~--~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~ 341 (392)
T TIGR01426 269 DLGELPPNVEV-----RQWVPQLEILKK--ADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPP 341 (392)
T ss_pred HhccCCCCeEE-----eCCCCHHHHHhh--CCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEecc
Confidence 34457888888 999999999988 99999999999999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
.+++++++.++++++++| ++|+++++++++.+... ++.+.++.+|+.+++
T Consensus 342 ~~~~~~~l~~ai~~~l~~-~~~~~~~~~l~~~~~~~--~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 342 EEVTAEKLREAVLAVLSD-PRYAERLRKMRAEIREA--GGARRAADEIEGFLA 391 (392)
T ss_pred ccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHhhc
Confidence 889999999999999999 99999999999999984 678999999988754
No 25
>PLN03015 UDP-glucosyl transferase
Probab=99.87 E-value=8.8e-22 Score=176.83 Aligned_cols=112 Identities=18% Similarity=0.291 Sum_probs=96.3
Q ss_pred cccccccc----ccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHH-HHcCceEEE
Q psy10494 15 NLKRNFTK----FFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-RRLGIGSYM 89 (203)
Q Consensus 15 ~lp~n~~~----~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~-~~~G~G~~l 89 (203)
.+|+|+.- +..++.+|+||.+||+||++++||||||+||++||+++||||+++|+++||+.||+++ +..|+|+.+
T Consensus 323 ~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~ 402 (470)
T PLN03015 323 SLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRT 402 (470)
T ss_pred cCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEe
Confidence 47777431 1134489999999999999999999999999999999999999999999999999999 669999998
Q ss_pred c----cCCCCHHHHHHHHHHHHh---c-hHHHHHHHHHHHHHhhc
Q psy10494 90 E----FEDIHTETLFENIQEILN---N-YDRYKKAVKRASDISKT 126 (203)
Q Consensus 90 ~----~~~~~~~~l~~ai~~ll~---~-~~~y~~~a~~~s~~~~~ 126 (203)
. .+.++.+++.++|++++. + +.++|+||+++++..++
T Consensus 403 ~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 403 SELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred cccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 5 235899999999999994 1 47899999999987766
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.84 E-value=8.8e-21 Score=166.56 Aligned_cols=116 Identities=19% Similarity=0.299 Sum_probs=104.1
Q ss_pred ccccccccccccccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCC
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDI 94 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~ 94 (203)
.+|+|+.+ .+|+||.++|++ +++||||||+||++|++++|+|++++|...||+.||+++++.|+|+.++..++
T Consensus 285 ~~~~~v~~-----~~~~p~~~ll~~--~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~ 357 (401)
T cd03784 285 DLPDNVRV-----VDFVPHDWLLPR--CAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPREL 357 (401)
T ss_pred CCCCceEE-----eCCCCHHHHhhh--hheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccC
Confidence 46789988 999999999999 99999999999999999999999999999999999999999999999988888
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 141 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~ 141 (203)
+++++.+++++++++ + +++++++..+.+++ .++.+.++..||.
T Consensus 358 ~~~~l~~al~~~l~~-~-~~~~~~~~~~~~~~--~~g~~~~~~~ie~ 400 (401)
T cd03784 358 TAERLAAALRRLLDP-P-SRRRAAALLRRIRE--EDGVPSAADVIER 400 (401)
T ss_pred CHHHHHHHHHHHhCH-H-HHHHHHHHHHHHHh--ccCHHHHHHHHhh
Confidence 999999999999976 5 55667777777765 4778888888874
No 27
>PLN02534 UDP-glycosyltransferase
Probab=99.83 E-value=6.9e-20 Score=165.64 Aligned_cols=118 Identities=23% Similarity=0.332 Sum_probs=97.3
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCceEEEcc------------C-C
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYMEF------------E-D 93 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~G~~l~~------------~-~ 93 (203)
.+|+||.+||+|+++.+||||||+||++||+++|||++++|+++||+.||++++ .+|+|+.+.. + .
T Consensus 349 ~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~ 428 (491)
T PLN02534 349 KGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVL 428 (491)
T ss_pred cCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCc
Confidence 899999999999999999999999999999999999999999999999999996 4899987731 1 2
Q ss_pred CCHHHHHHHHHHHHh---c-hHHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHHHh
Q psy10494 94 IHTETLFENIQEILN---N-YDRYKKAVKRASDISKTQM---MSPRDTAVWWVEYLLKA 145 (203)
Q Consensus 94 ~~~~~l~~ai~~ll~---~-~~~y~~~a~~~s~~~~~~p---~~~~~~a~~~ie~v~~~ 145 (203)
++.+++.++|++++. + +.++|+||+++++..++.- -++....-..|+.+.+.
T Consensus 429 v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 429 VKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred cCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 789999999999995 2 3689999999999877632 12344444555555443
No 28
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.54 E-value=2.8e-15 Score=117.13 Aligned_cols=92 Identities=27% Similarity=0.406 Sum_probs=75.9
Q ss_pred ccccccccccccccCC-HHHHhcCCCccEEEecCChhHHHHHHHcCCceeeccccc----chHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFFL-FVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG----DQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~p-q~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~----DQ~~na~~~~~~G~G~~l~~ 91 (203)
+.|+.+ .+|.+ ..+++.. ++++|||||.+|++|+++.|+|+|++|... +|..|+..+++.|+|+.+..
T Consensus 54 ~~~v~~-----~~~~~~m~~~m~~--aDlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~ 126 (167)
T PF04101_consen 54 NPNVKV-----FGFVDNMAELMAA--ADLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDE 126 (167)
T ss_dssp TCCCEE-----ECSSSSHHHHHHH--HSEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSEC
T ss_pred CCcEEE-----EechhhHHHHHHH--cCEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCc
Confidence 356667 89999 6788888 999999999999999999999999999988 99999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHH
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKA 116 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~ 116 (203)
.+.+.++|.++|.+++.+ +.+...
T Consensus 127 ~~~~~~~L~~~i~~l~~~-~~~~~~ 150 (167)
T PF04101_consen 127 SELNPEELAEAIEELLSD-PEKLKE 150 (167)
T ss_dssp CC-SCCCHHHHHHCHCCC-HH-SHH
T ss_pred ccCCHHHHHHHHHHHHcC-cHHHHH
Confidence 888889999999999988 655333
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.45 E-value=8.9e-13 Score=115.06 Aligned_cols=105 Identities=25% Similarity=0.404 Sum_probs=84.8
Q ss_pred cccC-C-HHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccc-----cchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFF-L-FVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFF-----GDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~-p-q~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~-----~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+|+ + -.+++++ ++++|||||.+|+.|++++|+|+|++|+. +||..||.++++.|+|..+..++++++.+.
T Consensus 239 ~~f~~~~m~~~~~~--adlvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~ 316 (352)
T PRK12446 239 FEYVHGELPDILAI--TDFVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLI 316 (352)
T ss_pred ecchhhhHHHHHHh--CCEEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHH
Confidence 4555 3 3468888 99999999999999999999999999985 489999999999999999998899999999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 101 ENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 101 ~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+++.++++|.+.|++++++++ .| ++.+.++++++
T Consensus 317 ~~l~~ll~~~~~~~~~~~~~~-----~~-~aa~~i~~~i~ 350 (352)
T PRK12446 317 KHVEELSHNNEKYKTALKKYN-----GK-EAIQTIIDHIS 350 (352)
T ss_pred HHHHHHHcCHHHHHHHHHHcC-----CC-CHHHHHHHHHH
Confidence 999999987235555444422 22 56666666654
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.44 E-value=1.3e-13 Score=118.55 Aligned_cols=89 Identities=31% Similarity=0.475 Sum_probs=73.8
Q ss_pred ccccccccccccccccCCH--HHHhcCCCccEEEecCChhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCceEEEc
Q psy10494 15 NLKRNFTKFFFFFFFFFLF--VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq--~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G~~l~ 90 (203)
.+++|+.. .+|.|+ .+.|+. ++++|||||.+|++|++++|+|++.+|..+ ||..||..+++.|+|+.++
T Consensus 226 ~~~~~v~~-----~~~~~~~~~~~l~~--ad~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~ 298 (321)
T TIGR00661 226 SYNENVEI-----RRITTDNFKELIKN--AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALE 298 (321)
T ss_pred ccCCCEEE-----EECChHHHHHHHHh--CCEEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcC
Confidence 45678887 888882 344454 999999999999999999999999999965 8999999999999999998
Q ss_pred cCCCCHHHHHHHHHHHHhchHHHH
Q psy10494 91 FEDIHTETLFENIQEILNNYDRYK 114 (203)
Q Consensus 91 ~~~~~~~~l~~ai~~ll~~~~~y~ 114 (203)
..++ ++.+++.++++| +.|.
T Consensus 299 ~~~~---~~~~~~~~~~~~-~~~~ 318 (321)
T TIGR00661 299 YKEL---RLLEAILDIRNM-KRYK 318 (321)
T ss_pred hhhH---HHHHHHHhcccc-cccc
Confidence 7665 667777777777 6653
No 31
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.37 E-value=5.2e-12 Score=109.32 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=96.4
Q ss_pred cccCC-HHHHhcCCCccEEEecCChhHHHHHHHcCCceeeccc----ccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 28 FFFFL-FVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPF----FGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 28 ~~~~p-q~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~----~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
.+|.. ..++++. ++++|+|+|.++++|++++|+|+|++|. .++|..|+..+.+.|.|..+..++++++++.++
T Consensus 240 ~g~~~~~~~~~~~--~d~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~ 317 (357)
T PRK00726 240 VPFIDDMAAAYAA--ADLVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEK 317 (357)
T ss_pred eehHhhHHHHHHh--CCEEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHH
Confidence 77773 3578888 9999999999999999999999999997 468999999999999999999888889999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 103 IQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 103 i~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
+.++++| +++++++.+-++...+. .+.++++..++.+++
T Consensus 318 i~~ll~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 318 LLELLSD-PERLEAMAEAARALGKP--DAAERLADLIEELAR 356 (357)
T ss_pred HHHHHcC-HHHHHHHHHHHHhcCCc--CHHHHHHHHHHHHhh
Confidence 9999999 99999998888887553 567777776665544
No 32
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.35 E-value=1.9e-12 Score=110.22 Aligned_cols=83 Identities=29% Similarity=0.474 Sum_probs=73.9
Q ss_pred ccccccccccccccC--CHHHHhcCCCccEEEecCChhHHHHHHHcCCceeeccc--ccchHHHHHHHHHcCceEEEccC
Q psy10494 17 KRNFTKFFFFFFFFF--LFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPF--FGDQNYNVKIIRRLGIGSYMEFE 92 (203)
Q Consensus 17 p~n~~~~~~~~~~~~--pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~--~~DQ~~na~~~~~~G~G~~l~~~ 92 (203)
++|+.+ .+|. .-.++|+. ++++|||||.+|++|+++.|+|++++|. ..||..||+++++.|+|+.++.+
T Consensus 231 ~~ni~~-----~~~~~~~~~~~m~~--ad~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~ 303 (318)
T PF13528_consen 231 PGNIHV-----RPFSTPDFAELMAA--ADLVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQE 303 (318)
T ss_pred CCCEEE-----eecChHHHHHHHHh--CCEEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccc
Confidence 677777 5554 34577887 9999999999999999999999999999 77999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy10494 93 DIHTETLFENIQEI 106 (203)
Q Consensus 93 ~~~~~~l~~ai~~l 106 (203)
+++++.|.++|+++
T Consensus 304 ~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 304 DLTPERLAEFLERL 317 (318)
T ss_pred cCCHHHHHHHHhcC
Confidence 99999999998764
No 33
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=1.5e-11 Score=107.57 Aligned_cols=111 Identities=23% Similarity=0.322 Sum_probs=91.4
Q ss_pred cccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeecccc----cchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 28 FFFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFF----GDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 28 ~~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~----~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
.+|+.+. +++.. +|++||++|++|+.|.++.|+|.|.+|.. +||..||..+++.|+|.+++..+++++++.+.
T Consensus 240 ~~f~~dm~~~~~~--ADLvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~ 317 (357)
T COG0707 240 LPFIDDMAALLAA--ADLVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAEL 317 (357)
T ss_pred eeHHhhHHHHHHh--ccEEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHH
Confidence 5666654 56776 99999999999999999999999999873 38999999999999999999999999999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 103 IQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 103 i~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
|.+++.+ +.-.+++++-++.+... ++.++....++...
T Consensus 318 i~~l~~~-~~~l~~m~~~a~~~~~p--~aa~~i~~~~~~~~ 355 (357)
T COG0707 318 ILRLLSN-PEKLKAMAENAKKLGKP--DAAERIADLLLALA 355 (357)
T ss_pred HHHHhcC-HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Confidence 9999998 66666666666666552 56666666665543
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.12 E-value=4.8e-10 Score=96.28 Aligned_cols=110 Identities=21% Similarity=0.303 Sum_probs=88.6
Q ss_pred ccccccccccccccC-CHHHHhcCCCccEEEecCChhHHHHHHHcCCceeeccc----ccchHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFF-LFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPF----FGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~-pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~----~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
++|+.. .+|. ...++|+. ++++++++|.+++.||+++|+|++++|. .++|..|+..+.+.|.|..++.
T Consensus 234 ~~~v~~-----~g~~~~~~~~l~~--ad~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~ 306 (350)
T cd03785 234 GVNYEV-----FPFIDDMAAAYAA--ADLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQ 306 (350)
T ss_pred CCCeEE-----eehhhhHHHHHHh--cCEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEec
Confidence 346665 7776 34567877 9999999999999999999999999986 4678999999999999999987
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHH
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAV 136 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~ 136 (203)
++.+.+++.+++++++++ ++.++++.+-++..... .+.++++
T Consensus 307 ~~~~~~~l~~~i~~ll~~-~~~~~~~~~~~~~~~~~--~~~~~i~ 348 (350)
T cd03785 307 EELTPERLAAALLELLSD-PERLKAMAEAARSLARP--DAAERIA 348 (350)
T ss_pred CCCCHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCC--CHHHHHH
Confidence 667899999999999998 88777777666655442 4455543
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.02 E-value=3.1e-09 Score=91.16 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=83.7
Q ss_pred CHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccc---cchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHh
Q psy10494 32 LFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFF---GDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILN 108 (203)
Q Consensus 32 pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~---~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~ 108 (203)
.-.++++. ++++|+++|.+++.||+++|+|+|+.|.. ++|..|+..+++.|.|..++.++.+.+++.++++++++
T Consensus 243 ~~~~~l~~--ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAYAA--ADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHHHh--CCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 44577887 99999999988999999999999999863 47888999999999999998777789999999999999
Q ss_pred chHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q psy10494 109 NYDRYKKAVKRASDISKTQMMSPRDTAVW 137 (203)
Q Consensus 109 ~~~~y~~~a~~~s~~~~~~p~~~~~~a~~ 137 (203)
| +++++++.+-++.+... ...++++.
T Consensus 321 ~-~~~~~~~~~~~~~~~~~--~~~~~i~~ 346 (348)
T TIGR01133 321 D-PANLEAMAEAARKLAKP--DAAKRIAE 346 (348)
T ss_pred C-HHHHHHHHHHHHhcCCc--cHHHHHHh
Confidence 9 88888777777665542 44555443
No 36
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.02 E-value=6e-09 Score=92.01 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=84.3
Q ss_pred cccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeec-ccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHH
Q psy10494 28 FFFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI-PFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQE 105 (203)
Q Consensus 28 ~~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i-P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ 105 (203)
.+|.++. +++.. +|++|+.+|..|+.||+++|+|+|.. |..++|..|+..+++.|+|+... +.+++.+++.+
T Consensus 261 ~G~~~~~~~~~~~--aDl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ 334 (391)
T PRK13608 261 LGYTKHMNEWMAS--SQLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVAS 334 (391)
T ss_pred EeccchHHHHHHh--hhEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHH
Confidence 7787653 57777 99999999999999999999999998 77778889999999999998765 78899999999
Q ss_pred HHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 106 ILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 106 ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
+++| ++.++++.+-++.... |... +..+..++.++.
T Consensus 335 ll~~-~~~~~~m~~~~~~~~~-~~s~-~~i~~~l~~l~~ 370 (391)
T PRK13608 335 LTNG-NEQLTNMISTMEQDKI-KYAT-QTICRDLLDLIG 370 (391)
T ss_pred HhcC-HHHHHHHHHHHHHhcC-CCCH-HHHHHHHHHHhh
Confidence 9998 7777666666666543 3444 444433333333
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.97 E-value=1e-08 Score=89.69 Aligned_cols=113 Identities=22% Similarity=0.220 Sum_probs=89.1
Q ss_pred ccccccccccccccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeec-ccccchHHHHHHHHHcCceEEEccCCC
Q psy10494 17 KRNFTKFFFFFFFFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI-PFFGDQNYNVKIIRRLGIGSYMEFEDI 94 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i-P~~~DQ~~na~~~~~~G~G~~l~~~~~ 94 (203)
++|+.. .+|+++. +++.. ++++|+.+|..++.||+++|+|+|+. |..+.+..|+..+++.|+|+...
T Consensus 255 ~~~v~~-----~g~~~~~~~l~~~--aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~---- 323 (380)
T PRK13609 255 PDALKV-----FGYVENIDELFRV--TSCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR---- 323 (380)
T ss_pred CCcEEE-----EechhhHHHHHHh--ccEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----
Confidence 446666 7888764 78888 99999999999999999999999985 77778889999999999998653
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
+.+++.+++.++++| ++.++++.+-++.+.+. .+.+.++..++..+
T Consensus 324 ~~~~l~~~i~~ll~~-~~~~~~m~~~~~~~~~~--~s~~~i~~~i~~~~ 369 (380)
T PRK13609 324 DDEEVFAKTEALLQD-DMKLLQMKEAMKSLYLP--EPADHIVDDILAEN 369 (380)
T ss_pred CHHHHHHHHHHHHCC-HHHHHHHHHHHHHhCCC--chHHHHHHHHHHhh
Confidence 679999999999998 88877777666655543 35556555555443
No 38
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.75 E-value=1.3e-07 Score=83.00 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=78.8
Q ss_pred cccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeecccccch-HHHHHHHHHcCceEEEccCCCCHHHHHHHHHH
Q psy10494 28 FFFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQ-NYNVKIIRRLGIGSYMEFEDIHTETLFENIQE 105 (203)
Q Consensus 28 ~~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ-~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ 105 (203)
.+|.++. ++++. +|++|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+.|.|+.+ -+++++.+++.+
T Consensus 270 ~G~~~~~~~l~~a--aDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~----~~~~~la~~i~~ 343 (382)
T PLN02605 270 RGFVTNMEEWMGA--CDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFS----ESPKEIARIVAE 343 (382)
T ss_pred EeccccHHHHHHh--CCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeec----CCHHHHHHHHHH
Confidence 7887754 67777 99999999999999999999999999755445 4799999999999865 388999999999
Q ss_pred HHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10494 106 ILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 141 (203)
Q Consensus 106 ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~ 141 (203)
++.+.++.++++.+.++.... | ++.+.++..+..
T Consensus 344 ll~~~~~~~~~m~~~~~~~~~-~-~a~~~i~~~l~~ 377 (382)
T PLN02605 344 WFGDKSDELEAMSENALKLAR-P-EAVFDIVHDLHE 377 (382)
T ss_pred HHcCCHHHHHHHHHHHHHhcC-C-chHHHHHHHHHH
Confidence 997524455555555555443 3 344444444443
No 39
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.58 E-value=5.4e-07 Score=79.97 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=77.5
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHc----CceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL----GIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~----G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++. ++++|+.+|..| .|+...|+|+|.+|....|. |+...++. |.++.+.. .+.+.+.+++.++++|
T Consensus 291 ~~~l~~--ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~--~~~~~l~~~l~~ll~d 364 (396)
T TIGR03492 291 AEILHW--ADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLAS--KNPEQAAQVVRQLLAD 364 (396)
T ss_pred HHHHHh--CCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCC--CCHHHHHHHHHHHHcC
Confidence 567888 999999999877 99999999999999877786 99887774 77777763 4569999999999998
Q ss_pred hHHHHHHHH-HHHHHhhcCCCCHHHHHHHHHHH
Q psy10494 110 YDRYKKAVK-RASDISKTQMMSPRDTAVWWVEY 141 (203)
Q Consensus 110 ~~~y~~~a~-~~s~~~~~~p~~~~~~a~~~ie~ 141 (203)
++..+++. +..+.+.+ | ++.++++..|..
T Consensus 365 -~~~~~~~~~~~~~~lg~-~-~a~~~ia~~i~~ 394 (396)
T TIGR03492 365 -PELLERCRRNGQERMGP-P-GASARIAESILK 394 (396)
T ss_pred -HHHHHHHHHHHHHhcCC-C-CHHHHHHHHHHH
Confidence 87776666 44444443 2 667777776653
No 40
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=98.41 E-value=6e-07 Score=77.47 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=74.8
Q ss_pred cccccccccccccCCH-HHHhcCCCccEEEecCChhHHHHHHHcCCceeeccccc---chHHHHHHHHHcCceEEEccCC
Q psy10494 18 RNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG---DQNYNVKIIRRLGIGSYMEFED 93 (203)
Q Consensus 18 ~n~~~~~~~~~~~~pq-~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~---DQ~~na~~~~~~G~G~~l~~~~ 93 (203)
+++.+ ..|..+ .+++.- ++.+|+-||.||++|-+++|+|.+++|... ||.-.|.++++.|+.-++.+++
T Consensus 277 p~i~I-----~~f~~~~~~ll~g--A~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~ 349 (400)
T COG4671 277 PHISI-----FEFRNDFESLLAG--ARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPEN 349 (400)
T ss_pred CCeEE-----EEhhhhHHHHHHh--hheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCccc
Confidence 56666 555555 367777 999999999999999999999999999853 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q psy10494 94 IHTETLFENIQEILNN 109 (203)
Q Consensus 94 ~~~~~l~~ai~~ll~~ 109 (203)
++++.+.+++...++-
T Consensus 350 lt~~~La~al~~~l~~ 365 (400)
T COG4671 350 LTPQNLADALKAALAR 365 (400)
T ss_pred CChHHHHHHHHhcccC
Confidence 9999999999999873
No 41
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.36 E-value=1.9e-06 Score=75.15 Aligned_cols=107 Identities=16% Similarity=0.084 Sum_probs=72.6
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeeccccc--------chHHH-----HHHHHHcCceEEEccCCCCHHHHH
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG--------DQNYN-----VKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~--------DQ~~n-----a~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.++++. +|++|+.+|.+++ |++++|+|+|.+|-.. .|..| +..+.+.+++..+...+.+++++.
T Consensus 256 ~~~~~~--aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 332 (380)
T PRK00025 256 REAMAA--ADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLA 332 (380)
T ss_pred HHHHHh--CCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHH
Confidence 467777 9999999999887 9999999999995432 22222 223333444444454677899999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHH
Q psy10494 101 ENIQEILNNYDRYKKAVKRASDISKTQ-MMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 101 ~ai~~ll~~~~~y~~~a~~~s~~~~~~-p~~~~~~a~~~ie~v~~ 144 (203)
+++.++++| ++.++++.+-.+..... ..++.++++.+|...++
T Consensus 333 ~~i~~ll~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 333 RALLPLLAD-GARRQALLEGFTELHQQLRCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHhcC-HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 999999999 87776555544222221 12678888888776654
No 42
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.33 E-value=1.1e-06 Score=77.68 Aligned_cols=103 Identities=14% Similarity=0.057 Sum_probs=80.5
Q ss_pred HHHHhcCCCccEEEecCChhHHHHHHHcCCceeec----cccc---------chHHHHHHHHHcCceEEEccCCCCHHHH
Q psy10494 33 FVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI----PFFG---------DQNYNVKIIRRLGIGSYMEFEDIHTETL 99 (203)
Q Consensus 33 q~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i----P~~~---------DQ~~na~~~~~~G~G~~l~~~~~~~~~l 99 (203)
..++++. +|++|+.+|..|+ |++++|+|+|.+ |+.. .|..|+..+.+.+++..+..++.+++.+
T Consensus 261 ~~~~l~a--ADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l 337 (385)
T TIGR00215 261 ARKAMFA--ADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPL 337 (385)
T ss_pred HHHHHHh--CCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHH
Confidence 3467777 9999999999988 999999999999 8742 3788999999999999888889999999
Q ss_pred HHHHHHHHhchH----HHHHHHHHHHHHhhcCC--CCHHHHHHHHH
Q psy10494 100 FENIQEILNNYD----RYKKAVKRASDISKTQM--MSPRDTAVWWV 139 (203)
Q Consensus 100 ~~ai~~ll~~~~----~y~~~a~~~s~~~~~~p--~~~~~~a~~~i 139 (203)
.+.+.++++| + +++++.++--..++.+- .++.++++..|
T Consensus 338 ~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 338 AIALLLLLEN-GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HHHHHHHhcC-CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 9999999998 7 55555554444443321 24566777644
No 43
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.28 E-value=4.4e-07 Score=76.87 Aligned_cols=55 Identities=18% Similarity=0.182 Sum_probs=48.5
Q ss_pred ccccccccccccccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHH
Q psy10494 17 KRNFTKFFFFFFFFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKI 79 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~ 79 (203)
++|+.+ ..|.++. +++.. ++++||+|| +|++|+++.|+|++++|...+|..||+.
T Consensus 223 ~~~i~~-----~~~~~~m~~lm~~--aDl~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 223 YPNIIL-----FIDVENMAELMNE--ADLAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CCCEEE-----EeCHHHHHHHHHH--CCEEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 346666 7888875 78888 999999999 9999999999999999999999999875
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.22 E-value=1.6e-05 Score=67.06 Aligned_cols=109 Identities=14% Similarity=0.036 Sum_probs=79.3
Q ss_pred ccccccccccccccccCCHHH---HhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceE
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGS 87 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~ 87 (203)
...+|+.. .+|+|+.+ ++.. +++++..+. .+++.||+++|+|+|+.+..+ +...+++.+.|.
T Consensus 244 ~~~~~v~~-----~g~~~~~~~~~~~~~--~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~ 312 (364)
T cd03814 244 ARYPNVHF-----LGFLDGEELAAAYAS--ADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGL 312 (364)
T ss_pred ccCCcEEE-----EeccCHHHHHHHHHh--CCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceE
Confidence 44567777 88888765 6776 899997764 478999999999999988654 445566678898
Q ss_pred EEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy10494 88 YMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWW 138 (203)
Q Consensus 88 ~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ 138 (203)
..+. .+.+++.+++.++++| ++.++++.+-+.....+ .+....+-.+
T Consensus 313 ~~~~--~~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 359 (364)
T cd03814 313 LVEP--GDAEAFAAALAALLAD-PELRRRMAARARAEAER-RSWEAFLDNL 359 (364)
T ss_pred EcCC--CCHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHhh-cCHHHHHHHH
Confidence 7763 3678899999999998 87777766666665432 4444443333
No 45
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.05 E-value=6.7e-05 Score=66.66 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=74.8
Q ss_pred HHhcCCCccEEEe-----cCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 35 IIIAHPNIKLFIT-----QGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 35 ~iL~~~~~~~~It-----hgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
++++. +++++. -+|..++.||+++|+|+|..|..+++......+.+.|+++... +.+++.+++.++++|
T Consensus 315 ~~y~~--aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~~La~~l~~ll~~ 388 (425)
T PRK05749 315 LLYAI--ADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAEDLAKAVTYLLTD 388 (425)
T ss_pred HHHHh--CCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHHHHHHHHHHHhcC
Confidence 45565 887443 2455569999999999999999888888888777778776644 679999999999998
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy10494 110 YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYL 142 (203)
Q Consensus 110 ~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v 142 (203)
++.++++.+-++..-.+.....++....++..
T Consensus 389 -~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~ 420 (425)
T PRK05749 389 -PDARQAYGEAGVAFLKQNQGALQRTLQLLEPY 420 (425)
T ss_pred -HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHh
Confidence 87777666666555443346667777666543
No 46
>KOG3349|consensus
Probab=98.02 E-value=9.2e-06 Score=62.33 Aligned_cols=63 Identities=21% Similarity=0.079 Sum_probs=50.9
Q ss_pred ccCCH-HHHhcCCCccEEEecCChhHHHHHHHcCCceeeccc----ccchHHHHHHHHHcCceEEEccCC
Q psy10494 29 FFFLF-VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPF----FGDQNYNVKIIRRLGIGSYMEFED 93 (203)
Q Consensus 29 ~~~pq-~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~----~~DQ~~na~~~~~~G~G~~l~~~~ 93 (203)
+|-|- .+.... ++++|+|+|+||++|.+..|+|.|+++- .+.|..-|..+++.|.=..-...+
T Consensus 69 ~f~psl~e~I~~--AdlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 69 DFSPSLTEDIRS--ADLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred ecCccHHHHHhh--ccEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 44554 445555 9999999999999999999999999984 468999999999999766555433
No 47
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=97.92 E-value=8.1e-05 Score=61.92 Aligned_cols=110 Identities=18% Similarity=0.102 Sum_probs=75.2
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
.++++.. .+++|+.+ ++.. ++++|.. |..+++.||+++|+|+|+.+.. .....+++.+.|..
T Consensus 254 ~~~~v~~-----~g~~~~~~~~~~~~~--~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~----~~~~~~~~~~~g~~ 322 (374)
T cd03801 254 LGDRVTF-----LGFVPDEDLPALYAA--ADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG----GIPEVVEDGETGLL 322 (374)
T ss_pred CCcceEE-----EeccChhhHHHHHHh--cCEEEecchhccccchHHHHHHcCCcEEEeCCC----ChhHHhcCCcceEE
Confidence 4566776 88887654 5666 8888843 5578999999999999998752 34555565778888
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
.+.. +.+++.+++.+++++ ++.++++.+-++....+.++....+..++
T Consensus 323 ~~~~--~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (374)
T cd03801 323 VPPG--DPEALAEAILRLLDD-PELRRRLGEAARERVAERFSWDRVAARTE 370 (374)
T ss_pred eCCC--CHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7743 589999999999998 76666555555422222245444444443
No 48
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.91 E-value=0.00011 Score=62.99 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=68.1
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec----------CChhHHHHHHHcCCceeecccccchHHHHHHHHH
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----------GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR 82 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----------gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~ 82 (203)
+++++.. .+++|+.+ ++.. +++++.. |-.+++.||+++|+|+|+-+..+ +...+.+
T Consensus 243 ~~~~v~~-----~g~~~~~~l~~~~~~--ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~ 311 (367)
T cd05844 243 LGGRVTF-----LGAQPHAEVRELMRR--ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVED 311 (367)
T ss_pred CCCeEEE-----CCCCCHHHHHHHHHh--CCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheec
Confidence 3556666 88988765 4666 8887753 23689999999999999987643 5566667
Q ss_pred cCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy10494 83 LGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASD 122 (203)
Q Consensus 83 ~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~ 122 (203)
.+.|..++. .+.+++.+++.++++| ++.++++.+-++
T Consensus 312 ~~~g~~~~~--~d~~~l~~~i~~l~~~-~~~~~~~~~~a~ 348 (367)
T cd05844 312 GETGLLVPE--GDVAALAAALGRLLAD-PDLRARMGAAGR 348 (367)
T ss_pred CCeeEEECC--CCHHHHHHHHHHHHcC-HHHHHHHHHHHH
Confidence 788888874 3779999999999998 765554444333
No 49
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=97.87 E-value=0.00016 Score=62.44 Aligned_cols=94 Identities=14% Similarity=0.077 Sum_probs=69.3
Q ss_pred cccccccccccccccCCHHHH---hcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVII---IAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~i---L~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+.+|+.. .+|+|+.++ +.. +++++.. |-..++.||+++|+|+|+.+..+ ....+++.+.|..
T Consensus 281 ~~~~v~~-----~g~~~~~~~~~~~~~--adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~ 349 (398)
T cd03800 281 VIDRVDF-----PGRVSREDLPALYRA--ADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLL 349 (398)
T ss_pred CCceEEE-----eccCCHHHHHHHHHh--CCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEE
Confidence 3456666 899998764 666 8888854 32478999999999999876543 4455666778988
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
++.. +.+++.+++.+++++ ++.++++.+-++.
T Consensus 350 ~~~~--~~~~l~~~i~~l~~~-~~~~~~~~~~a~~ 381 (398)
T cd03800 350 VDPR--DPEALAAALRRLLTD-PALRRRLSRAGLR 381 (398)
T ss_pred eCCC--CHHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 8744 689999999999998 7655555444433
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=97.85 E-value=0.00023 Score=59.82 Aligned_cols=94 Identities=13% Similarity=0.088 Sum_probs=68.5
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec-----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ-----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGS 87 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith-----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~ 87 (203)
..+++.. .+|+|+.+ ++.. +++++.. |...++.||+++|+|+|+.+.. .....+.+.+.|.
T Consensus 241 ~~~~v~~-----~g~~~~~~~~~~~~~--ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~ 309 (359)
T cd03823 241 GDPRVEF-----LGAYPQEEIDDFYAE--IDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGL 309 (359)
T ss_pred CCCeEEE-----eCCCCHHHHHHHHHh--CCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEE
Confidence 3466666 89998765 4776 8888842 3456899999999999997653 3455566666888
Q ss_pred EEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 88 YMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 88 ~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
.++.+ +.+++.+++.++++| +...+.+.+-++.
T Consensus 310 ~~~~~--d~~~l~~~i~~l~~~-~~~~~~~~~~~~~ 342 (359)
T cd03823 310 LFPPG--DAEDLAAALERLIDD-PDLLERLRAGIEP 342 (359)
T ss_pred EECCC--CHHHHHHHHHHHHhC-hHHHHHHHHhHHH
Confidence 88754 589999999999998 7666555554433
No 51
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=97.82 E-value=0.00022 Score=59.86 Aligned_cols=103 Identities=17% Similarity=0.095 Sum_probs=71.0
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+++++.. .+|+|+.+ ++.. +++++...- .+++.||+++|+|+|+.+..+ ....+.. +.|..
T Consensus 260 ~~~~v~~-----~g~~~~~~~~~~~~~--adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~ 327 (375)
T cd03821 260 LEDRVTF-----TGMLYGEDKAAALAD--ADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWV 327 (375)
T ss_pred ccceEEE-----cCCCChHHHHHHHhh--CCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEE
Confidence 4677777 89999654 4666 888776432 678999999999999976533 3344444 78877
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDT 134 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~ 134 (203)
.+. +.+++.+++.+++++ ++..+++.+-++....+.++....
T Consensus 328 ~~~---~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~~~~s~~~~ 369 (375)
T cd03821 328 VDD---DVDALAAALRRALEL-PQRLKAMGENGRALVEERFSWTAI 369 (375)
T ss_pred eCC---ChHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhcCHHHH
Confidence 764 449999999999998 766666665555552222444333
No 52
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.82 E-value=0.00012 Score=63.68 Aligned_cols=100 Identities=15% Similarity=0.118 Sum_probs=69.8
Q ss_pred cccCCHH---HHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHH
Q psy10494 28 FFFFLFV---IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQ 104 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 104 (203)
.+.++.. .++.+ ++++++..|.. +.||+++|+|+|.++-.++++. +.+.|.+..+. .+++++.+++.
T Consensus 260 ~~~~~~~~~~~~l~~--ad~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~ 329 (365)
T TIGR00236 260 IEPLEYLDFLNLAAN--SHLILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAK 329 (365)
T ss_pred ECCCChHHHHHHHHh--CCEEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHH
Confidence 5555543 45666 99999987754 7999999999999976555442 33467776653 37899999999
Q ss_pred HHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 105 EILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 105 ~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+++++ ++.++++.+-...+.+ ..+.+++++.++
T Consensus 330 ~ll~~-~~~~~~~~~~~~~~g~--~~a~~ri~~~l~ 362 (365)
T TIGR00236 330 RLLTD-PDEYKKMSNASNPYGD--GEASERIVEELL 362 (365)
T ss_pred HHHhC-hHHHHHhhhcCCCCcC--chHHHHHHHHHH
Confidence 99998 8877777655544433 245566555443
No 53
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.82 E-value=0.00021 Score=60.65 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=67.1
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec------CChhHHHHHHHcCCceeecccccchHHHHHHHH-HcCc
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ------GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGI 85 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith------gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~-~~G~ 85 (203)
+.+|+.. .+|+|+.+ ++.. +++++.- |...++.||+++|+|+|+.+..+... .+. ..+.
T Consensus 242 ~~~~V~~-----~g~v~~~~~~~~~~~--ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~ 310 (357)
T cd03795 242 LLDRVRF-----LGRLDDEEKAALLAA--CDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVT 310 (357)
T ss_pred CcceEEE-----cCCCCHHHHHHHHHh--CCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCc
Confidence 4567777 99999864 5555 7777622 33568999999999999976554443 233 3678
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
|...+. -+.+++.+++.++++| ++.++++.+-++..
T Consensus 311 g~~~~~--~d~~~~~~~i~~l~~~-~~~~~~~~~~~~~~ 346 (357)
T cd03795 311 GLVVPP--GDPAALAEAIRRLLED-PELRERLGEAARER 346 (357)
T ss_pred eEEeCC--CCHHHHHHHHHHHHHC-HHHHHHHHHHHHHH
Confidence 877764 3789999999999998 76665555544443
No 54
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.79 E-value=0.00031 Score=62.41 Aligned_cols=110 Identities=12% Similarity=0.079 Sum_probs=73.9
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec---------CC-hhHHHHHHHcCCceeecccccchHHHHHHHHH
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ---------GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR 82 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith---------gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~ 82 (203)
+.+++.. .+|+|+.+ ++.. +++|+.. -| .+++.||+++|+|+|+....+ ....+++
T Consensus 277 l~~~V~~-----~G~~~~~el~~~l~~--aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~ 345 (406)
T PRK15427 277 LEDVVEM-----PGFKPSHEVKAMLDD--ADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEA 345 (406)
T ss_pred CCCeEEE-----eCCCCHHHHHHHHHh--CCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcC
Confidence 3456666 89999875 5555 8888863 23 367999999999999976533 2344555
Q ss_pred cCceEEEccCCCCHHHHHHHHHHHHh-chHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 83 LGIGSYMEFEDIHTETLFENIQEILN-NYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 83 ~G~G~~l~~~~~~~~~l~~ai~~ll~-~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
...|..++.+ +.+++.++|.++++ | ++.++++.+-++..-.+.++....+..+.
T Consensus 346 ~~~G~lv~~~--d~~~la~ai~~l~~~d-~~~~~~~~~~ar~~v~~~f~~~~~~~~l~ 400 (406)
T PRK15427 346 DKSGWLVPEN--DAQALAQRLAAFSQLD-TDELAPVVKRAREKVETDFNQQVINRELA 400 (406)
T ss_pred CCceEEeCCC--CHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5678887743 78999999999999 8 76555555555444333345433333333
No 55
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=97.74 E-value=0.00021 Score=60.27 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=67.4
Q ss_pred ccccccccccccccCCHHH---HhcCCCccEEEecCC---------hhHHHHHHHcCCceeecccccchHHHHHHHHHcC
Q psy10494 17 KRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQGG---------LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLG 84 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~---iL~~~~~~~~IthgG---------~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G 84 (203)
.+|+.. .+++|+.+ ++.. +++++.... .+++.||+.+|+|+|+.+..+.+.. +.+.+
T Consensus 274 ~~~v~~-----~g~~~~~~~~~~~~~--~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~----~~~~~ 342 (394)
T cd03794 274 LDNVTF-----LGRVPKEELPELLAA--ADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL----VEEAG 342 (394)
T ss_pred CCcEEE-----eCCCChHHHHHHHHh--hCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh----hccCC
Confidence 356666 78888765 5666 888875432 3447999999999999987654432 23337
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhc
Q psy10494 85 IGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 85 ~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
.|..++.+ +.+++.+++.++++| ++.++++.+-+..+..
T Consensus 343 ~g~~~~~~--~~~~l~~~i~~~~~~-~~~~~~~~~~~~~~~~ 381 (394)
T cd03794 343 AGLVVPPG--DPEALAAAILELLDD-PEERAEMGENGRRYVE 381 (394)
T ss_pred cceEeCCC--CHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHH
Confidence 78777744 789999999999988 7666666555554443
No 56
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=97.72 E-value=0.00038 Score=58.16 Aligned_cols=84 Identities=23% Similarity=0.142 Sum_probs=63.4
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEe----cCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFIT----QGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~It----hgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+++|+.. .+++|+.+ ++.. +++++. -|..+++.||+++|+|+|+.+..+ ....+.+.+.|..
T Consensus 257 ~~~~v~~-----~g~~~~~~~~~~~~~--ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~ 325 (377)
T cd03798 257 LEDRVTF-----LGAVPHEEVPAYYAA--ADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLL 325 (377)
T ss_pred CcceEEE-----eCCCCHHHHHHHHHh--cCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeE
Confidence 4567777 89998764 4555 778773 355788999999999999876543 3455666777877
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRY 113 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y 113 (203)
.+. -+.+++.+++.+++++ +..
T Consensus 326 ~~~--~~~~~l~~~i~~~~~~-~~~ 347 (377)
T cd03798 326 VPP--GDPEALAEAILRLLAD-PWL 347 (377)
T ss_pred ECC--CCHHHHHHHHHHHhcC-cHH
Confidence 764 3789999999999988 664
No 57
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.72 E-value=0.00024 Score=54.65 Aligned_cols=94 Identities=22% Similarity=0.223 Sum_probs=70.2
Q ss_pred cccccccccccccccCCH---HHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLF---VIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq---~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+++++.. .++.++ ..++.. ++++++. |...++.||+.+|+|+|+.. ...+...+.+.+.|..
T Consensus 71 ~~~~i~~-----~~~~~~~~l~~~~~~--~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~ 139 (172)
T PF00534_consen 71 LKENIIF-----LGYVPDDELDELYKS--SDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFL 139 (172)
T ss_dssp CGTTEEE-----EESHSHHHHHHHHHH--TSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEE
T ss_pred ccccccc-----ccccccccccccccc--ceeccccccccccccccccccccccceeecc----ccCCceeeccccceEE
Confidence 4556666 788883 356777 8888887 66789999999999999864 3455566677778998
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
++.. +.+++.++|.+++++ +++++++.+-++.
T Consensus 140 ~~~~--~~~~l~~~i~~~l~~-~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 140 FDPN--DIEELADAIEKLLND-PELRQKLGKNARE 171 (172)
T ss_dssp ESTT--SHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred eCCC--CHHHHHHHHHHHHCC-HHHHHHHHHHhcC
Confidence 8854 899999999999999 8777777665543
No 58
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=97.69 E-value=0.00042 Score=58.57 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=73.7
Q ss_pred ccccccccccccc-ccCCHHH---HhcCCCccEEEec------CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCc
Q psy10494 16 LKRNFTKFFFFFF-FFFLFVI---IIAHPNIKLFITQ------GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGI 85 (203)
Q Consensus 16 lp~n~~~~~~~~~-~~~pq~~---iL~~~~~~~~Ith------gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~ 85 (203)
+++++.. . +|+|+.+ ++.. +++++.. |..+++.||+++|+|+|+.+..+ ...+...+.
T Consensus 245 ~~~~v~~-----~~~~~~~~~~~~~~~~--ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~ 312 (366)
T cd03822 245 LADRVIF-----INRYLPDEELPELFSA--ADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGT 312 (366)
T ss_pred CCCcEEE-----ecCcCCHHHHHHHHhh--cCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCC
Confidence 4455555 5 4588754 5555 8888742 34578999999999999987654 233555677
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
|..++.. +.+++.+++.+++++ ++.++++.+-++....+ ++....+..+.+
T Consensus 313 g~~~~~~--d~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~~-~s~~~~~~~~~~ 363 (366)
T cd03822 313 GLLVPPG--DPAALAEAIRRLLAD-PELAQALRARAREYARA-MSWERVAERYLR 363 (366)
T ss_pred cEEEcCC--CHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHhh-CCHHHHHHHHHH
Confidence 8877644 589999999999998 66666666555555544 555554444443
No 59
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.64 E-value=0.00012 Score=64.03 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=77.7
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeec-ccccchHHHHHHHH---HcCceEEE-------------ccCCCCH
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI-PFFGDQNYNVKIIR---RLGIGSYM-------------EFEDIHT 96 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i-P~~~DQ~~na~~~~---~~G~G~~l-------------~~~~~~~ 96 (203)
.+++.. +|+.|+.+|..|+ |+...|+|+++. ....-|..||+++. ..|++-++ ..++.|+
T Consensus 230 ~~~m~~--aDlal~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~ 306 (347)
T PRK14089 230 HKALLE--AEFAFICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTV 306 (347)
T ss_pred HHHHHh--hhHHHhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCH
Confidence 467777 9999999999999 999999999983 33457889999998 56766555 3367899
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 97 ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 97 ~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+.+.+++.+ ... .+.++...++.+.+.. ++.++++.++.
T Consensus 307 ~~la~~i~~-~~~-~~~~~~~~~l~~~l~~---~a~~~~A~~i~ 345 (347)
T PRK14089 307 ENLLKAYKE-MDR-EKFFKKSKELREYLKH---GSAKNVAKILK 345 (347)
T ss_pred HHHHHHHHH-HHH-HHHHHHHHHHHHHhcC---CHHHHHHHHHh
Confidence 999999988 344 6788888888887742 67777776654
No 60
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=97.63 E-value=0.00075 Score=55.94 Aligned_cols=95 Identities=20% Similarity=0.246 Sum_probs=65.6
Q ss_pred HHHhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcC-ceEEEccCCCCHHHHHHHHHHHHh
Q psy10494 34 VIIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLG-IGSYMEFEDIHTETLFENIQEILN 108 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ll~ 108 (203)
.+++.. +++++.... .+++.||+++|+|+|+.+..+.+. .+.+.| .|...+. .+.+++.+++.++++
T Consensus 247 ~~~~~~--ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~~~~g~~~~~--~~~~~~~~~i~~ll~ 318 (348)
T cd03820 247 EEYYAK--ASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIEDGVNGLLVPN--GDVEALAEALLRLME 318 (348)
T ss_pred HHHHHh--CCEEEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhccCcceEEeCC--CCHHHHHHHHHHHHc
Confidence 356776 888887653 578999999999999886544332 233444 7887764 367999999999999
Q ss_pred chHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy10494 109 NYDRYKKAVKRASDISKTQMMSPRDTAVWW 138 (203)
Q Consensus 109 ~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ 138 (203)
| ++.++++.+-++.+..+ ++....+..|
T Consensus 319 ~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 346 (348)
T cd03820 319 D-EELRKRMGANARESAER-FSIENIIKQW 346 (348)
T ss_pred C-HHHHHHHHHHHHHHHHH-hCHHHHHHHh
Confidence 9 88777776665554443 4444444333
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.58 E-value=0.0013 Score=57.52 Aligned_cols=109 Identities=11% Similarity=-0.054 Sum_probs=73.9
Q ss_pred ccccccccccccccCCHHH---HhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEE
Q psy10494 17 KRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYM 89 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l 89 (203)
.+++.. .+++|..+ ++.. +++++.. |...++.||+++|+|+|+....+ ....+++...|..+
T Consensus 282 ~~~v~~-----~g~~~~~~~~~~l~~--ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~ 350 (405)
T TIGR03449 282 ADRVRF-----LPPRPPEELVHVYRA--ADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLV 350 (405)
T ss_pred CceEEE-----CCCCCHHHHHHHHHh--CCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEEC
Confidence 455666 88988764 5777 8888743 33578999999999999976533 23345566678877
Q ss_pred ccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 90 EFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 90 ~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+. -+.+++.+++.+++++ +..++++.+-+....++ ++-...+..+.+
T Consensus 351 ~~--~d~~~la~~i~~~l~~-~~~~~~~~~~~~~~~~~-fsw~~~~~~~~~ 397 (405)
T TIGR03449 351 DG--HDPADWADALARLLDD-PRTRIRMGAAAVEHAAG-FSWAATADGLLS 397 (405)
T ss_pred CC--CCHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 64 3779999999999998 76666655555444332 454444444443
No 62
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.56 E-value=0.00051 Score=60.91 Aligned_cols=90 Identities=19% Similarity=0.190 Sum_probs=71.4
Q ss_pred EEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Q psy10494 45 FITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 45 ~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
++-+||+| ..|++++|+|+|.-|....|..-++++++.|+|+.++ +++.+.+++..+++| +..++++.+-...+
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v~~l~~~-~~~r~~~~~~~~~~ 400 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAVELLLAD-EDKREAYGRAGLEF 400 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHHHHhcCC-HHHHHHHHHHHHHH
Confidence 44588887 8899999999999999999999999999999999998 478899999888888 77777775555555
Q ss_pred hcCCCCHHHHHHHHHH
Q psy10494 125 KTQMMSPRDTAVWWVE 140 (203)
Q Consensus 125 ~~~p~~~~~~a~~~ie 140 (203)
-.+...+.++....++
T Consensus 401 v~~~~gal~r~l~~l~ 416 (419)
T COG1519 401 LAQNRGALARTLEALK 416 (419)
T ss_pred HHHhhHHHHHHHHHhh
Confidence 4443345666555443
No 63
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=97.54 E-value=0.00046 Score=58.06 Aligned_cols=88 Identities=16% Similarity=0.102 Sum_probs=63.9
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+++|+.. .+++|+.+ ++.. +++++... ...++.||+++|+|+|+.+.. ..+..+++.+.|..
T Consensus 257 ~~~~v~~-----~g~~~~~~~~~~~~~--ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~ 325 (374)
T cd03817 257 LADRVIF-----TGFVPREELPDYYKA--ADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFL 325 (374)
T ss_pred CCCcEEE-----eccCChHHHHHHHHH--cCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEE
Confidence 4567777 89999865 5666 88888543 357899999999999997643 24455666678888
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVK 118 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~ 118 (203)
++..+ . ++.+++.+++++ ++..+.+.
T Consensus 326 ~~~~~--~-~~~~~i~~l~~~-~~~~~~~~ 351 (374)
T cd03817 326 FPPGD--E-ALAEALLRLLQD-PELRRRLS 351 (374)
T ss_pred eCCCC--H-HHHHHHHHHHhC-hHHHHHHH
Confidence 87543 2 899999999998 65433333
No 64
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.54 E-value=0.0011 Score=58.91 Aligned_cols=91 Identities=16% Similarity=0.237 Sum_probs=65.3
Q ss_pred cccCCHHHH---hcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFFLFVII---IAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~pq~~i---L~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+|+|+.++ +....+++|+...- .++++||+++|+|+|+....+ ....+.+.+.|..+.. .-+.+++.
T Consensus 294 ~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~-~~~~~~la 368 (407)
T cd04946 294 TGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSK-DPTPNELV 368 (407)
T ss_pred ecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCC-CCCHHHHH
Confidence 899998754 44445788876543 578999999999999875433 3445555558888764 34789999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHh
Q psy10494 101 ENIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 101 ~ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
++|.++++| ++.++++.+-++..
T Consensus 369 ~~I~~ll~~-~~~~~~m~~~ar~~ 391 (407)
T cd04946 369 SSLSKFIDN-EEEYQTMREKAREK 391 (407)
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHH
Confidence 999999998 76666555544443
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=97.52 E-value=0.00077 Score=57.07 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=66.0
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEe----------cCChhHHHHHHHcCCceeecccccchHHHHHHHHH
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFIT----------QGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR 82 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~It----------hgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~ 82 (203)
+++|+.. .+++|+.+ ++.+ +++++. -|..+++.||+++|+|+|+.+..+ ....+++
T Consensus 234 ~~~~v~~-----~g~~~~~~l~~~~~~--adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~ 302 (355)
T cd03799 234 LEDRVTL-----LGAKSQEEVRELLRA--ADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVED 302 (355)
T ss_pred CCCeEEE-----CCcCChHHHHHHHHh--CCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhC
Confidence 4677777 89998654 5565 888777 344689999999999999976533 1234444
Q ss_pred cCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy10494 83 LGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASD 122 (203)
Q Consensus 83 ~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~ 122 (203)
...|..++.+ +.+++.+++.+++++ +....++.+-++
T Consensus 303 ~~~g~~~~~~--~~~~l~~~i~~~~~~-~~~~~~~~~~a~ 339 (355)
T cd03799 303 GETGLLVPPG--DPEALADAIERLLDD-PELRREMGEAGR 339 (355)
T ss_pred CCceEEeCCC--CHHHHHHHHHHHHhC-HHHHHHHHHHHH
Confidence 5588877643 789999999999988 655444444333
No 66
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.00074 Score=51.19 Aligned_cols=61 Identities=13% Similarity=0.055 Sum_probs=48.7
Q ss_pred ccCCHH-HHhcCCCccEEEecCChhHHHHHHHcCCceeecccc--------cchHHHHHHHHHcCceEEEcc
Q psy10494 29 FFFLFV-IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFF--------GDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 29 ~~~pq~-~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~--------~DQ~~na~~~~~~G~G~~l~~ 91 (203)
++-+-. .+..+ ++++|+|+|.||+..++..++|.|++|-. ..|..-|..+.+.+.-....+
T Consensus 54 ~~~~kiQsli~d--arIVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~sp 123 (161)
T COG5017 54 DKEEKIQSLIHD--ARIVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSP 123 (161)
T ss_pred chHHHHHHHhhc--ceEEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcC
Confidence 333433 45555 77999999999999999999999999964 368888999999888776664
No 67
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.48 E-value=0.002 Score=56.59 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=61.4
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEecC----C-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQG----G-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGS 87 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ithg----G-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~ 87 (203)
++.++.. .+++|+.+ +++. +++++... | ..++.||+++|+|+|+....+ +...+++...|.
T Consensus 255 l~~~v~~-----~G~~~~~~l~~~~~~--aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~ 323 (380)
T PRK15484 255 IGDRCIM-----LGGQPPEKMHNYYPL--ADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGY 323 (380)
T ss_pred cCCcEEE-----eCCCCHHHHHHHHHh--CCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceE
Confidence 4455555 88998755 4766 88888533 3 367899999999999986532 344555666787
Q ss_pred EEccCCCCHHHHHHHHHHHHhchHHHHH
Q psy10494 88 YMEFEDIHTETLFENIQEILNNYDRYKK 115 (203)
Q Consensus 88 ~l~~~~~~~~~l~~ai~~ll~~~~~y~~ 115 (203)
.+. ...+.+++.+++.++++| ++.++
T Consensus 324 ~l~-~~~d~~~la~~I~~ll~d-~~~~~ 349 (380)
T PRK15484 324 HLA-EPMTSDSIISDINRTLAD-PELTQ 349 (380)
T ss_pred EEe-CCCCHHHHHHHHHHHHcC-HHHHH
Confidence 443 134789999999999998 76543
No 68
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.47 E-value=0.0017 Score=55.68 Aligned_cols=111 Identities=13% Similarity=0.077 Sum_probs=73.1
Q ss_pred ccccccccccccccCCH-HHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq-~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
++++.. .++.++ .+++.. +++++.- |...++.||+.+|+|+|+.+.. .....+++...|...+.
T Consensus 252 ~~~v~~-----~g~~~~~~~~~~~--~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~ 320 (371)
T cd04962 252 QDDVLF-----LGKQDHVEELLSI--ADLFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDV 320 (371)
T ss_pred CceEEE-----ecCcccHHHHHHh--cCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCC
Confidence 445555 566554 356777 7888743 4467999999999999997553 24455555567877764
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 141 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~ 141 (203)
+ +.+++.+++.+++++ +..++.+.+-++..-.+.++....+..+.+.
T Consensus 321 ~--~~~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~~~~~ 367 (371)
T cd04962 321 G--DVEAMAEYALSLLED-DELWQEFSRAARNRAAERFDSERIVPQYEAL 367 (371)
T ss_pred C--CHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3 678999999999988 7666555554444422225555555555443
No 69
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.46 E-value=0.0014 Score=54.47 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=62.5
Q ss_pred cccCCH-HHHhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 28 FFFFLF-VIIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 28 ~~~~pq-~~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
.++..+ .+++.. +++++.... .+++.||+.+|+|+|+.+..+ ....+++.+.|..++.+ +.+++.++
T Consensus 251 ~g~~~~~~~~~~~--adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~~~~~~~~ 322 (359)
T cd03808 251 LGFRDDVPELLAA--ADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--DAEALADA 322 (359)
T ss_pred eeccccHHHHHHh--ccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--CHHHHHHH
Confidence 554332 356766 888886543 688999999999999976543 34455556788887643 68999999
Q ss_pred HHHHHhchHHHHHHHHHHHHHh
Q psy10494 103 IQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 103 i~~ll~~~~~y~~~a~~~s~~~ 124 (203)
+.+++.| ++..+++.+-+...
T Consensus 323 i~~l~~~-~~~~~~~~~~~~~~ 343 (359)
T cd03808 323 IERLIED-PELRARMGQAARKR 343 (359)
T ss_pred HHHHHhC-HHHHHHHHHHHHHH
Confidence 9999988 76666555554444
No 70
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.37 E-value=0.0043 Score=53.70 Aligned_cols=106 Identities=15% Similarity=0.056 Sum_probs=69.8
Q ss_pred cccCCHH---HHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCH----
Q psy10494 28 FFFFLFV---IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHT---- 96 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~---- 96 (203)
.+++|.. +++.+ +|+++.- |...++.||+++|+|+|+....+ ....+++.+.|..++.++.+.
T Consensus 266 ~~~~~~~~~~~~~~~--aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~----~~e~i~~~~~G~~~~~~~~~~~~~~ 339 (388)
T TIGR02149 266 NKMLPKEELVELLSN--AEVFVCPSIYEPLGIVNLEAMACGTPVVASATGG----IPEVVVDGETGFLVPPDNSDADGFQ 339 (388)
T ss_pred cCCCCHHHHHHHHHh--CCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCC----HHHHhhCCCceEEcCCCCCcccchH
Confidence 4567764 45777 8888864 33567899999999999976532 445566667898887654322
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 97 ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 97 ~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+++.+++.++++| ++-++++.+-++....+.++....+..+++
T Consensus 340 ~~l~~~i~~l~~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 382 (388)
T TIGR02149 340 AELAKAINILLAD-PELAKKMGIAGRKRAEEEFSWGSIAKKTVE 382 (388)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 7899999999988 766555544444332222454444444444
No 71
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.37 E-value=0.0021 Score=53.74 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=53.8
Q ss_pred HHHhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 34 VIIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.+++.. +++++..+. .+++.||+++|+|+|+.+..+ +...+.+ .|..++.+ +.+++.+++.+++++
T Consensus 263 ~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~~----~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~ 332 (365)
T cd03807 263 PALLNA--LDVFVLSSLSEGFPNVLLEAMACGLPVVATDVGD----NAELVGD--TGFLVPPG--DPEALAEAIEALLAD 332 (365)
T ss_pred HHHHHh--CCEEEeCCccccCCcHHHHHHhcCCCEEEcCCCC----hHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhC
Confidence 356776 888886544 489999999999999875433 3344444 56666643 689999999999998
Q ss_pred hHHHHHHHHHHH
Q psy10494 110 YDRYKKAVKRAS 121 (203)
Q Consensus 110 ~~~y~~~a~~~s 121 (203)
++.+....+-+
T Consensus 333 -~~~~~~~~~~~ 343 (365)
T cd03807 333 -PALRQALGEAA 343 (365)
T ss_pred -hHHHHHHHHHH
Confidence 65444433333
No 72
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.35 E-value=0.0013 Score=57.82 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=62.2
Q ss_pred cccCCHHH---HhcCCCccEEEec---CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFFLFVI---IIAHPNIKLFITQ---GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~pq~~---iL~~~~~~~~Ith---gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+++|+.+ ++.. +++++.- .| ..++.||+++|+|+|+.... .....+.+...|..++.+ +++++.
T Consensus 286 ~G~v~~~~~~~~l~~--adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~--d~~~la 357 (396)
T cd03818 286 LGRVPYDQYLALLQV--SDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF--DPDALA 357 (396)
T ss_pred eCCCCHHHHHHHHHh--CcEEEEcCcccccchHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--CHHHHH
Confidence 89999876 4555 7777642 22 35899999999999987542 334455555678877643 689999
Q ss_pred HHHHHHHhchHHHHHHHHHHHHHh
Q psy10494 101 ENIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 101 ~ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
+++.++++| ++.++++.+-++..
T Consensus 358 ~~i~~ll~~-~~~~~~l~~~ar~~ 380 (396)
T cd03818 358 AAVIELLDD-PARRARLRRAARRT 380 (396)
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHH
Confidence 999999998 76655555544443
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.34 E-value=0.00033 Score=60.35 Aligned_cols=80 Identities=15% Similarity=0.253 Sum_probs=57.7
Q ss_pred cccCCHH---HHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHH
Q psy10494 28 FFFFLFV---IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQ 104 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 104 (203)
.+..+.. .++.. ++++|+..| +.+.|+++.|+|+|.++-..+ +....+.|++..+. + +.+++.+++.
T Consensus 263 ~~~~~~~~~~~l~~~--ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~--~-~~~~i~~~i~ 332 (363)
T cd03786 263 ISPLGYLYFLLLLKN--ADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVG--T-DPEAILAAIE 332 (363)
T ss_pred ECCcCHHHHHHHHHc--CcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecC--C-CHHHHHHHHH
Confidence 4444443 34555 999999999 677899999999999864322 33456677776654 2 5899999999
Q ss_pred HHHhchHHHHHHHH
Q psy10494 105 EILNNYDRYKKAVK 118 (203)
Q Consensus 105 ~ll~~~~~y~~~a~ 118 (203)
+++++ +..+.+++
T Consensus 333 ~ll~~-~~~~~~~~ 345 (363)
T cd03786 333 KLLSD-EFAYSLMS 345 (363)
T ss_pred HHhcC-chhhhcCC
Confidence 99988 66655543
No 74
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.31 E-value=0.0035 Score=53.21 Aligned_cols=88 Identities=17% Similarity=0.115 Sum_probs=60.8
Q ss_pred cccCC-HH---HHhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHH
Q psy10494 28 FFFFL-FV---IIIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99 (203)
Q Consensus 28 ~~~~p-q~---~iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l 99 (203)
.+|++ +. .++.. +++++... ..+++.||+++|+|+|+....+ ....+.+.+.|..++. .+.+++
T Consensus 249 ~g~~~~~~~~~~~~~~--ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~~--~~~~~~ 320 (365)
T cd03825 249 LGSLNDDESLALIYSA--ADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAKP--GDPEDL 320 (365)
T ss_pred cCCcCCHHHHHHHHHh--CCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeCC--CCHHHH
Confidence 88888 43 35766 88988853 3689999999999999875432 1123333457777663 378899
Q ss_pred HHHHHHHHhchHHHHHHHHHHHHHh
Q psy10494 100 FENIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 100 ~~ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
.+++.+++++ ++..+++.+-++..
T Consensus 321 ~~~l~~l~~~-~~~~~~~~~~~~~~ 344 (365)
T cd03825 321 AEGIEWLLAD-PDEREELGEAAREL 344 (365)
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 9999999988 76444444444433
No 75
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.30 E-value=0.00055 Score=57.86 Aligned_cols=84 Identities=21% Similarity=0.280 Sum_probs=68.5
Q ss_pred HhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHHHH
Q psy10494 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKK 115 (203)
Q Consensus 36 iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~ 115 (203)
++.. +++.|+-||. |+.|++..|+|.+++|+...|.--|...+..|+-..+... +........+.++.+| ...+.
T Consensus 224 LMke--~d~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d-~~~rk 298 (318)
T COG3980 224 LMKE--ADLAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKD-YARRK 298 (318)
T ss_pred HHHh--cchheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhC-HHHhh
Confidence 5555 8888888775 8999999999999999999999999999999999888755 6777888888888888 66666
Q ss_pred HHHHHHHHh
Q psy10494 116 AVKRASDIS 124 (203)
Q Consensus 116 ~a~~~s~~~ 124 (203)
+.-.-++..
T Consensus 299 ~l~~~~~~i 307 (318)
T COG3980 299 NLSFGSKLI 307 (318)
T ss_pred hhhhcccee
Confidence 555444433
No 76
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.29 E-value=0.0045 Score=53.52 Aligned_cols=98 Identities=17% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 34 VIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 34 ~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.+++.. +++++.- |-.+++.||+++|+|+|+.+..+ +...+++...|..++. -+.+++.+++.+++++
T Consensus 267 ~~~~~~--adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~--~d~~~la~~i~~l~~~ 338 (374)
T TIGR03088 267 PALMQA--LDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPP--GDAVALARALQPYVSD 338 (374)
T ss_pred HHHHHh--cCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCC--CCHHHHHHHHHHHHhC
Confidence 356777 8888742 44689999999999999977533 3445555567887764 3778999999999988
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 110 YDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 110 ~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
++.+..+.+-++....+.++....+..+.+
T Consensus 339 -~~~~~~~~~~a~~~~~~~fs~~~~~~~~~~ 368 (374)
T TIGR03088 339 -PAARRAHGAAGRARAEQQFSINAMVAAYAG 368 (374)
T ss_pred -HHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 665554443333332222454444444443
No 77
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.25 E-value=0.00089 Score=57.42 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=66.8
Q ss_pred ccccccccccccccccCCHHH---HhcCCCccEEEec--CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ--GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith--gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
.+++|+.. .+++|+.+ +++. +++++.. -| ..++.||+++|+|+|+....+ ....+++.+.|..
T Consensus 239 ~~~~~V~~-----~g~~~~~~~~~~~~~--ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~ 307 (351)
T cd03804 239 KAGPNVTF-----LGRVSDEELRDLYAR--ARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGIL 307 (351)
T ss_pred hcCCCEEE-----ecCCCHHHHHHHHHh--CCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEE
Confidence 35677777 99999854 5667 7877753 22 366789999999999986533 2234555578888
Q ss_pred EccCCCCHHHHHHHHHHHHhchH-HHHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYD-RYKKAVKRASD 122 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~-~y~~~a~~~s~ 122 (203)
++.+ +.+++.++|.++++| + ..++++++.++
T Consensus 308 ~~~~--~~~~la~~i~~l~~~-~~~~~~~~~~~~~ 339 (351)
T cd03804 308 FEEQ--TVESLAAAVERFEKN-EDFDPQAIRAHAE 339 (351)
T ss_pred eCCC--CHHHHHHHHHHHHhC-cccCHHHHHHHHH
Confidence 8743 678899999999988 6 45555554443
No 78
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.18 E-value=0.002 Score=55.67 Aligned_cols=95 Identities=22% Similarity=0.103 Sum_probs=63.6
Q ss_pred cccccccccccccccCCHH-HHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEc
Q psy10494 16 LKRNFTKFFFFFFFFFLFV-IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~-~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
+++++.. .++.++. .++.. ++++|.- |...++.||+++|+|+|+..... .....+++...|..++
T Consensus 259 ~~~~v~~-----~g~~~~~~~~~~~--ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~ 328 (372)
T cd04949 259 LEDYVFL-----KGYTRDLDEVYQK--AQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVP 328 (372)
T ss_pred CcceEEE-----cCCCCCHHHHHhh--hhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeC
Confidence 4455555 5555443 46777 6666643 33678999999999999875431 1234556667888887
Q ss_pred cCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 91 FEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 91 ~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
. -+.+++.++|.++++| ++..+.+.+-+..
T Consensus 329 ~--~d~~~la~~i~~ll~~-~~~~~~~~~~a~~ 358 (372)
T cd04949 329 K--GDIEALAEAIIELLND-PKLLQKFSEAAYE 358 (372)
T ss_pred C--CcHHHHHHHHHHHHcC-HHHHHHHHHHHHH
Confidence 4 3789999999999998 6554444444433
No 79
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.16 E-value=0.00075 Score=56.97 Aligned_cols=94 Identities=14% Similarity=0.140 Sum_probs=65.6
Q ss_pred ccccccccccccccccCCHHH---HhcCCCccEEEec----CChhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCc
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGI 85 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~ 85 (203)
..++++.. .+|+|+.+ ++.. +++++.. |..+++.||+++|+|+|+....+ |.. . ..
T Consensus 250 ~~~~~v~~-----~g~~~~~~~~~~~~~--~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~------~--~~ 314 (365)
T cd03809 250 GLGDRVRF-----LGYVSDEELAALYRG--ARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVA------G--DA 314 (365)
T ss_pred CCCCeEEE-----CCCCChhHHHHHHhh--hhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcccee------c--Cc
Confidence 35677777 89998864 5666 7776643 33568999999999999875422 221 1 24
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhc
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
|..+... +.+++.+++.++++| +..+.++.+-++....
T Consensus 315 ~~~~~~~--~~~~~~~~i~~l~~~-~~~~~~~~~~~~~~~~ 352 (365)
T cd03809 315 ALYFDPL--DPEALAAAIERLLED-PALREELRERGLARAK 352 (365)
T ss_pred eeeeCCC--CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 5555533 789999999999998 8877777666654443
No 80
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.14 E-value=0.0059 Score=54.68 Aligned_cols=89 Identities=13% Similarity=0.054 Sum_probs=62.1
Q ss_pred cccCCHHHH---hcCC--CccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 28 FFFFLFVII---IAHP--NIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 28 ~~~~pq~~i---L~~~--~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
.+++|+.++ +... .+++|+... -..++.||+++|+|+|+....+ ....+.+...|..++.. ++++
T Consensus 322 ~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~~--d~~~ 395 (439)
T TIGR02472 322 PKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDVL--DLEA 395 (439)
T ss_pred cCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCCC--CHHH
Confidence 777787664 4431 247888653 3579999999999999886533 33444555678887754 7899
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
+.+++.++++| +..++++.+-++.
T Consensus 396 la~~i~~ll~~-~~~~~~~~~~a~~ 419 (439)
T TIGR02472 396 IASALEDALSD-SSQWQLWSRNGIE 419 (439)
T ss_pred HHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 99999999998 7665555554443
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.06 E-value=0.0025 Score=53.99 Aligned_cols=107 Identities=15% Similarity=0.142 Sum_probs=66.4
Q ss_pred ccccccccccccccCCH-HHHhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq-~~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
++|+.. .++..+ .+++.. +++++.-.. .+++.||+++|+|+|+... ..+...+++ .|..+..
T Consensus 244 ~~~v~~-----~g~~~~~~~~~~~--ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~--~g~~~~~ 310 (360)
T cd04951 244 SNRVKL-----LGLRDDIAAYYNA--ADLFVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGD--SGLIVPI 310 (360)
T ss_pred CCcEEE-----ecccccHHHHHHh--hceEEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecC--CceEeCC
Confidence 445555 555443 356777 777776543 6789999999999998643 334444444 4444543
Q ss_pred CCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
-+.+++.+++.+++++.+.+++.+.+..+...+ .++....+..+.
T Consensus 311 --~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~-~~s~~~~~~~~~ 355 (360)
T cd04951 311 --SDPEALANKIDEILKMSGEERDIIGARRERIVK-KFSINSIVQQWL 355 (360)
T ss_pred --CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 378899999999984316666666655333333 255444444443
No 82
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.01 E-value=0.012 Score=52.98 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred cccCCHHH---HhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHH---cCceEEEccCCCCHH
Q psy10494 28 FFFFLFVI---IIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR---LGIGSYMEFEDIHTE 97 (203)
Q Consensus 28 ~~~~pq~~---iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~---~G~G~~l~~~~~~~~ 97 (203)
.+|+|..+ ++.. +++|+.... ..++.||+++|+|+|+....+ ....+++ .+.|..++.+ +.+
T Consensus 317 ~G~v~~~ev~~~~~~--aDv~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~ 388 (465)
T PLN02871 317 TGMLQGDELSQAYAS--GDVFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVD 388 (465)
T ss_pred eccCCHHHHHHHHHH--CCEEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHH
Confidence 88998765 5666 889986543 467899999999999876532 2234444 6788888744 679
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 98 TLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 98 ~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
++.+++.++++| ++.++++.+-++.
T Consensus 389 ~la~~i~~ll~~-~~~~~~~~~~a~~ 413 (465)
T PLN02871 389 DCVEKLETLLAD-PELRERMGAAARE 413 (465)
T ss_pred HHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 999999999998 7655555444443
No 83
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.97 E-value=0.0047 Score=53.30 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=70.7
Q ss_pred ccccccccccccccccCCHHHHhcC--CCccEEEecC-------C------hhHHHHHHHcCCceeecccccchHHHHHH
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVIIIAH--PNIKLFITQG-------G------LQSLQEAVHFEVPVIGIPFFGDQNYNVKI 79 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~iL~~--~~~~~~Ithg-------G------~~s~~Eal~~gvP~i~iP~~~DQ~~na~~ 79 (203)
..++|+.. .+|+|++++..+ ....++.... . -+-+.|.+++|+|+|+.+ ....+..
T Consensus 204 ~~~~~V~f-----~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~ 274 (333)
T PRK09814 204 ENSANISY-----KGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADF 274 (333)
T ss_pred ccCCCeEE-----ecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHH
Confidence 34567777 899999876433 1122222111 1 122778899999999864 4567788
Q ss_pred HHHcCceEEEccCCCCHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhhcC
Q psy10494 80 IRRLGIGSYMEFEDIHTETLFENIQEILNN-YDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 80 ~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~-~~~y~~~a~~~s~~~~~~ 127 (203)
+++.++|.+++ +.+++.+++.++..+ +..+++|++++++.++.-
T Consensus 275 V~~~~~G~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 275 IVENGLGFVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred HHhCCceEEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999997 567899999886533 356889999999999874
No 84
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.95 E-value=0.0083 Score=52.73 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=59.5
Q ss_pred cccCCHH-HHhcCCCccEEE--ec--CCh-hHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHH
Q psy10494 28 FFFFLFV-IIIAHPNIKLFI--TQ--GGL-QSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFE 101 (203)
Q Consensus 28 ~~~~pq~-~iL~~~~~~~~I--th--gG~-~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ 101 (203)
.+++|+. ..+.+ ++++| ++ .|. +.+.||+++|+|+|+.+...+.. .+..|.|..+. .+.+++.+
T Consensus 285 ~G~v~~~~~~~~~--adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~---~~~~~la~ 354 (397)
T TIGR03087 285 TGSVADVRPYLAH--AAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA---ADPADFAA 354 (397)
T ss_pred eeecCCHHHHHHh--CCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC---CCHHHHHH
Confidence 7777753 46666 88887 32 343 46999999999999987543321 12346777664 37899999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHh
Q psy10494 102 NIQEILNNYDRYKKAVKRASDIS 124 (203)
Q Consensus 102 ai~~ll~~~~~y~~~a~~~s~~~ 124 (203)
++.++++| +..++++.+-++..
T Consensus 355 ai~~ll~~-~~~~~~~~~~ar~~ 376 (397)
T TIGR03087 355 AILALLAN-PAEREELGQAARRR 376 (397)
T ss_pred HHHHHHcC-HHHHHHHHHHHHHH
Confidence 99999998 77665555544443
No 85
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.93 E-value=0.0088 Score=51.82 Aligned_cols=83 Identities=13% Similarity=0.189 Sum_probs=58.3
Q ss_pred cccccccccccccccCCH--HH---HhcCCCccEEEec----CChhHHHHHHHcCCceeecc-cccchHHHHHHHHHcCc
Q psy10494 16 LKRNFTKFFFFFFFFFLF--VI---IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIP-FFGDQNYNVKIIRRLGI 85 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq--~~---iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP-~~~DQ~~na~~~~~~G~ 85 (203)
+++++.. .+|.++ .. .+.. +++++.. |-..++.||+++|+|+|+.. ..+ ....+++...
T Consensus 234 l~~~v~f-----~G~~~~~~~~~~~~~~~--~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~ 302 (359)
T PRK09922 234 IEQRIIW-----HGWQSQPWEVVQQKIKN--VSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLN 302 (359)
T ss_pred CCCeEEE-----ecccCCcHHHHHHHHhc--CcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCc
Confidence 4567776 787643 22 3334 6777754 33689999999999999875 432 1234555567
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhchHH
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNNYDR 112 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~~~~ 112 (203)
|..++. -+.+++.+++.++++| ++
T Consensus 303 G~lv~~--~d~~~la~~i~~l~~~-~~ 326 (359)
T PRK09922 303 GELYTP--GNIDEFVGKLNKVISG-EV 326 (359)
T ss_pred eEEECC--CCHHHHHHHHHHHHhC-cc
Confidence 887764 3889999999999988 65
No 86
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=96.90 E-value=0.0095 Score=51.62 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=64.7
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
+.+++.. .+++|+.+ ++.. +++++... -..++.||+++|+|+|+.-..+ ....+.+.+.|..
T Consensus 278 l~~~V~f-----~g~~~~~~~~~~l~~--ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~ 346 (392)
T cd03805 278 LEDQVIF-----LPSISDSQKELLLSS--ARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFL 346 (392)
T ss_pred CCceEEE-----eCCCChHHHHHHHhh--CeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEE
Confidence 3456666 89999874 5666 78877432 2467899999999999875433 2234555567877
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
.+ . +.+++.+++.+++++ ++.++++.+-++.
T Consensus 347 ~~--~-~~~~~a~~i~~l~~~-~~~~~~~~~~a~~ 377 (392)
T cd03805 347 CE--P-TPEEFAEAMLKLAND-PDLADRMGAAGRK 377 (392)
T ss_pred eC--C-CHHHHHHHHHHHHhC-hHHHHHHHHHHHH
Confidence 65 2 789999999999998 7655555444433
No 87
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.84 E-value=0.027 Score=49.64 Aligned_cols=95 Identities=13% Similarity=0.168 Sum_probs=61.9
Q ss_pred cccCCHHH---HhcCCCccEEE--ecCC------hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCH
Q psy10494 28 FFFFLFVI---IIAHPNIKLFI--TQGG------LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHT 96 (203)
Q Consensus 28 ~~~~pq~~---iL~~~~~~~~I--thgG------~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 96 (203)
.+|+|+.+ +++. +++++ +..+ -+.+.|++.+|+|+|+.+..+.... ..++ +.|..++.+ +.
T Consensus 289 ~G~~~~~~~~~~~~~--aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~~~--~~i~--~~G~~~~~~--d~ 360 (412)
T PRK10307 289 LPLQPYDRLPALLKM--ADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTELG--QLVE--GIGVCVEPE--SV 360 (412)
T ss_pred eCCCCHHHHHHHHHh--cCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCchHH--HHHh--CCcEEeCCC--CH
Confidence 88998764 5666 66544 3322 1347899999999999875442211 2223 788888754 67
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCH
Q psy10494 97 ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSP 131 (203)
Q Consensus 97 ~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~ 131 (203)
+++.++|.++++| +..++++.+-++..-.+.++.
T Consensus 361 ~~la~~i~~l~~~-~~~~~~~~~~a~~~~~~~fs~ 394 (412)
T PRK10307 361 EALVAAIAALARQ-ALLRPKLGTVAREYAERTLDK 394 (412)
T ss_pred HHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHcCH
Confidence 9999999999988 766655555555433322443
No 88
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.82 E-value=0.014 Score=52.84 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=64.5
Q ss_pred cccccccccccccccCCHHHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHc------Cc
Q psy10494 16 LKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL------GI 85 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~------G~ 85 (203)
+++|+.. .+...-.++++. +++++.. |-.+++.||+++|+|+|+-... .....+++. ..
T Consensus 352 l~~~V~f-----~G~~~v~~~l~~--aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~ 420 (475)
T cd03813 352 LEDNVKF-----TGFQNVKEYLPK--LDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPA 420 (475)
T ss_pred CCCeEEE-----cCCccHHHHHHh--CCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCc
Confidence 4566666 665455567776 8887754 3357899999999999996442 233344442 27
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
|.+++. .+.+++.+++.++++| ++.++++.+-++.
T Consensus 421 G~lv~~--~d~~~la~ai~~ll~~-~~~~~~~~~~a~~ 455 (475)
T cd03813 421 GEVVPP--ADPEALARAILRLLKD-PELRRAMGEAGRK 455 (475)
T ss_pred eEEECC--CCHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 877764 3789999999999998 7666655554443
No 89
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=96.81 E-value=0.007 Score=50.07 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=60.1
Q ss_pred cccccccccccccccCCHH-HHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEc
Q psy10494 16 LKRNFTKFFFFFFFFFLFV-IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~-~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
+++++.. .++.+.. +++.. +++++.. |..+++.||+++|+|+|+.... .....+++.+.|...+
T Consensus 244 ~~~~v~~-----~g~~~~~~~~~~~--~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~ 312 (353)
T cd03811 244 LADRVHF-----LGFQSNPYPYLKA--ADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVP 312 (353)
T ss_pred CCccEEE-----ecccCCHHHHHHh--CCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEEC
Confidence 3455665 6665543 56776 7887743 3467899999999999987553 4456677788898887
Q ss_pred cCCCCHHHH---HHHHHHHHhchHHHHHHHHH
Q psy10494 91 FEDIHTETL---FENIQEILNNYDRYKKAVKR 119 (203)
Q Consensus 91 ~~~~~~~~l---~~ai~~ll~~~~~y~~~a~~ 119 (203)
.+ +.+.+ .+.+.++..+ ++...++.+
T Consensus 313 ~~--~~~~~~~~~~~i~~~~~~-~~~~~~~~~ 341 (353)
T cd03811 313 VG--DEAALAAAALALLDLLLD-PELRERLAA 341 (353)
T ss_pred CC--CHHHHHHHHHHHHhccCC-hHHHHHHHH
Confidence 43 56666 5566666666 554444444
No 90
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.70 E-value=0.0097 Score=50.55 Aligned_cols=107 Identities=14% Similarity=0.089 Sum_probs=63.9
Q ss_pred ccccccccccccccccCCHHH---HhcCCCccEEEecCC-----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCce
Q psy10494 15 NLKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQGG-----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIG 86 (203)
Q Consensus 15 ~lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~IthgG-----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G 86 (203)
++.+++.. .+++|+.+ .+.. +++++.+.- .+++.||+++|+|+|+....+. ...++. .|
T Consensus 245 ~~~~~V~~-----~g~~~~~~~~~~~~~--ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g 311 (363)
T cd04955 245 AADPRIIF-----VGPIYDQELLELLRY--AALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KA 311 (363)
T ss_pred CCCCcEEE-----ccccChHHHHHHHHh--CCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--Ce
Confidence 34567777 89999875 4444 677766543 3679999999999998754321 111222 34
Q ss_pred EEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 87 SYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 87 ~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
...+.. +.+.+++.+++++ ++...++.+-++....+.++-...+..++
T Consensus 312 ~~~~~~----~~l~~~i~~l~~~-~~~~~~~~~~~~~~~~~~fs~~~~~~~~~ 359 (363)
T cd04955 312 IYFKVG----DDLASLLEELEAD-PEEVSAMAKAARERIREKYTWEKIADQYE 359 (363)
T ss_pred eEecCc----hHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 444422 2299999999998 65555554444443332244333333433
No 91
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=96.69 E-value=0.0082 Score=50.97 Aligned_cols=93 Identities=14% Similarity=0.016 Sum_probs=63.1
Q ss_pred cccccccccccccccCCH-HHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEc
Q psy10494 16 LKRNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq-~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
+++++.. .++..+ .+++.. +++++.. |-.+++.||+++|+|+|+....+. ...+.+ +.|....
T Consensus 247 ~~~~v~~-----~g~~~~~~~~~~~--adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~ 314 (358)
T cd03812 247 LEDKVIF-----LGVRNDVPELLQA--MDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSL 314 (358)
T ss_pred CCCcEEE-----ecccCCHHHHHHh--cCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeC
Confidence 3455655 565333 357776 7887764 447899999999999998765442 233444 5565554
Q ss_pred cCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q psy10494 91 FEDIHTETLFENIQEILNNYDRYKKAVKRASDI 123 (203)
Q Consensus 91 ~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~ 123 (203)
. -+++++.++|.++++| +..++++...+..
T Consensus 315 ~--~~~~~~a~~i~~l~~~-~~~~~~~~~~~~~ 344 (358)
T cd03812 315 D--ESPEIWAEEILKLKSE-DRRERSSESIKKK 344 (358)
T ss_pred C--CCHHHHHHHHHHHHhC-cchhhhhhhhhhc
Confidence 2 2579999999999999 8777666554433
No 92
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=96.65 E-value=0.026 Score=48.95 Aligned_cols=103 Identities=12% Similarity=0.024 Sum_probs=67.4
Q ss_pred cccC--CHH---HHhcCCCccEEEecCC----hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 28 FFFF--LFV---IIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 28 ~~~~--pq~---~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
.++. |.. .+++. +++|+.... ..++.||+++|+|+|+.+..+ ....+.+...|...+ +.++
T Consensus 257 ~~~~~~~~~~~~~~~~~--ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~ 326 (372)
T cd03792 257 LTLPPVSDLEVNALQRA--STVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEE 326 (372)
T ss_pred EecCCCCHHHHHHHHHh--CeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHH
Confidence 5655 443 45666 899886542 569999999999999976533 123355556777665 4567
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEY 141 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~ 141 (203)
+..++.+++++ ++.++.+.+-++....+.++....+..|++.
T Consensus 327 ~a~~i~~ll~~-~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~~ 368 (372)
T cd03792 327 AAVRILYLLRD-PELRRKMGANAREHVRENFLITRHLKDYLYL 368 (372)
T ss_pred HHHHHHHHHcC-HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 88899999988 7777666665555433225555555555543
No 93
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.59 E-value=0.027 Score=39.01 Aligned_cols=82 Identities=18% Similarity=0.085 Sum_probs=53.8
Q ss_pred cCChhHHHHHHHcCCceeecccccchHHHHHHHHHcC-ceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhc
Q psy10494 48 QGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLG-IGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 48 hgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
+|-..-+.|++++|+|+|.-+. ..... +-..| -++..+ +.+++.+.+..+++| +..+++..+-+...-.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~-~~~~~~~~~~~~----~~~el~~~i~~ll~~-~~~~~~ia~~a~~~v~ 78 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE-IFEDGEHIITYN----DPEELAEKIEYLLEN-PEERRRIAKNARERVL 78 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH-HcCCCCeEEEEC----CHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
Confidence 4556789999999999998854 22222 22334 344443 889999999999999 7655555555544333
Q ss_pred CCCCHHHHHHHHH
Q psy10494 127 QMMSPRDTAVWWV 139 (203)
Q Consensus 127 ~p~~~~~~a~~~i 139 (203)
..++...++.+++
T Consensus 79 ~~~t~~~~~~~il 91 (92)
T PF13524_consen 79 KRHTWEHRAEQIL 91 (92)
T ss_pred HhCCHHHHHHHHH
Confidence 3356666666654
No 94
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.51 E-value=0.021 Score=50.79 Aligned_cols=72 Identities=15% Similarity=0.175 Sum_probs=53.9
Q ss_pred cccCCHHH---HhcCCCccEEEe----c---CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHH
Q psy10494 28 FFFFLFVI---IIAHPNIKLFIT----Q---GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTE 97 (203)
Q Consensus 28 ~~~~pq~~---iL~~~~~~~~It----h---gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~ 97 (203)
.+|+|..+ +|+. ++++++ . |-.+.+.||+++|+|+|+.... .....+++.+.|..++ +.+
T Consensus 300 ~g~~~~~~~~~~l~~--aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~----d~~ 369 (415)
T cd03816 300 TPWLSAEDYPKLLAS--ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG----DSE 369 (415)
T ss_pred cCcCCHHHHHHHHHh--CCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC----CHH
Confidence 46888765 4666 888874 1 1245799999999999996542 3445677777898873 789
Q ss_pred HHHHHHHHHHhc
Q psy10494 98 TLFENIQEILNN 109 (203)
Q Consensus 98 ~l~~ai~~ll~~ 109 (203)
++.+++.++++|
T Consensus 370 ~la~~i~~ll~~ 381 (415)
T cd03816 370 ELAEQLIDLLSN 381 (415)
T ss_pred HHHHHHHHHHhc
Confidence 999999999976
No 95
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=96.32 E-value=0.078 Score=48.66 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=68.4
Q ss_pred cccCCHHHHhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccC--CCC----HH
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFE--DIH----TE 97 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~--~~~----~~ 97 (203)
.++.+..+++.. +++++.- |-..++.||+++|+|+|+....+ .+...+++-..|..++.. .-+ .+
T Consensus 381 ~G~~~~~~~~~~--adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~ 455 (500)
T TIGR02918 381 KGHRNLSEVYKD--YELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIIT 455 (500)
T ss_pred cCCCCHHHHHHh--CCEEEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHH
Confidence 778777888887 7887763 33688999999999999976431 123445555578877632 122 67
Q ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy10494 98 TLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYL 142 (203)
Q Consensus 98 ~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v 142 (203)
++.++|.+++++ + .+.++.+-+.....+ ++....+-.|.+.+
T Consensus 456 ~la~~I~~ll~~-~-~~~~~~~~a~~~a~~-fs~~~v~~~w~~ll 497 (500)
T TIGR02918 456 ALAEKIVEYFNS-N-DIDAFHEYSYQIAEG-FLTANIIEKWKKLV 497 (500)
T ss_pred HHHHHHHHHhCh-H-HHHHHHHHHHHHHHh-cCHHHHHHHHHHHH
Confidence 899999999954 3 233333333333322 45555566666543
No 96
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=96.30 E-value=0.046 Score=46.27 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=59.2
Q ss_pred cccccccccccccccCCH-HHHhcCCCccEEEecC-----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEE
Q psy10494 16 LKRNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQG-----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYM 89 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq-~~iL~~~~~~~~Ithg-----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l 89 (203)
+++++.. .+|.+. .+++.. +++++.-. ..+++.||+++|+|+|+....+ ....+.+.+.|..+
T Consensus 244 ~~~~v~~-----~g~~~~~~~~l~~--ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~ 312 (355)
T cd03819 244 LQDRVTF-----VGHCSDMPAAYAL--ADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLV 312 (355)
T ss_pred CcceEEE-----cCCcccHHHHHHh--CCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEe
Confidence 3456666 666332 356766 77777544 2479999999999999875432 34455555688888
Q ss_pred ccCCCCHHHHHHHHHHHHh-chHHHHHHHHH
Q psy10494 90 EFEDIHTETLFENIQEILN-NYDRYKKAVKR 119 (203)
Q Consensus 90 ~~~~~~~~~l~~ai~~ll~-~~~~y~~~a~~ 119 (203)
+.+ +.+++.+++..++. + ++.+.++.+
T Consensus 313 ~~~--~~~~l~~~i~~~~~~~-~~~~~~~~~ 340 (355)
T cd03819 313 PPG--DAEALAQALDQILSLL-PEGRAKMFA 340 (355)
T ss_pred CCC--CHHHHHHHHHHHHhhC-HHHHHHHHH
Confidence 643 78899999976654 4 444443333
No 97
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=96.20 E-value=0.045 Score=48.10 Aligned_cols=78 Identities=10% Similarity=0.130 Sum_probs=53.2
Q ss_pred ccccccccccccccCCHHH---HhcCCCccEEEecC---C-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEE
Q psy10494 17 KRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQG---G-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYM 89 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ithg---G-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l 89 (203)
.+++.. .+|+|+.+ +++. +++++.-. | ..++.||+++|+|+|+-+..+- ...+.+ |.+...
T Consensus 249 ~~~v~~-----~G~~~~~~~~~~l~~--ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~~-~~~~~~ 316 (398)
T cd03796 249 QDRVEL-----LGAVPHERVRDVLVQ--GHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLPP-DMILLA 316 (398)
T ss_pred CCeEEE-----eCCCCHHHHHHHHHh--CCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhheeC-Cceeec
Confidence 344555 89998754 5655 88887543 3 3599999999999999876432 223333 434333
Q ss_pred ccCCCCHHHHHHHHHHHHhc
Q psy10494 90 EFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 90 ~~~~~~~~~l~~ai~~ll~~ 109 (203)
. . +.+++.+++.+++++
T Consensus 317 ~--~-~~~~l~~~l~~~l~~ 333 (398)
T cd03796 317 E--P-DVESIVRKLEEAISI 333 (398)
T ss_pred C--C-CHHHHHHHHHHHHhC
Confidence 2 2 679999999999976
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.95 E-value=0.076 Score=50.69 Aligned_cols=93 Identities=14% Similarity=0.086 Sum_probs=63.5
Q ss_pred ccccccccccccccCCHH-HHhcCCCccEEEe---cCC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFFLFV-IIIAHPNIKLFIT---QGG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~-~iL~~~~~~~~It---hgG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
.+++.. .+|.+.. .++.. +++|+. +.| .+++.||+.+|+|+|+....+ ....+++-..|..++.
T Consensus 573 ~~~V~f-----lG~~~dv~~ll~a--aDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~ 641 (694)
T PRK15179 573 GERILF-----TGLSRRVGYWLTQ--FNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPA 641 (694)
T ss_pred CCcEEE-----cCCcchHHHHHHh--cCEEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCC
Confidence 355555 7776643 56766 778775 344 589999999999999986532 3344556567999987
Q ss_pred CCCCHHHHHHHHHHHHh----chHHHHHHHHHHH
Q psy10494 92 EDIHTETLFENIQEILN----NYDRYKKAVKRAS 121 (203)
Q Consensus 92 ~~~~~~~l~~ai~~ll~----~~~~y~~~a~~~s 121 (203)
++.+.+++.+++.+++. + +..++++++..
T Consensus 642 ~d~~~~~La~aL~~ll~~l~~~-~~l~~~ar~~a 674 (694)
T PRK15179 642 DTVTAPDVAEALARIHDMCAAD-PGIARKAADWA 674 (694)
T ss_pred CCCChHHHHHHHHHHHhChhcc-HHHHHHHHHHH
Confidence 77776677777766654 4 66666665544
No 99
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.87 E-value=0.14 Score=46.20 Aligned_cols=86 Identities=16% Similarity=0.323 Sum_probs=66.9
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE-EccCCCCHHHHHHHHHHHHhchHHH
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY-MEFEDIHTETLFENIQEILNNYDRY 113 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~-l~~~~~~~~~l~~ai~~ll~~~~~y 113 (203)
.++++ ++++|..= +.+..=|+..|||.++++. | +-....+++.|.... .+.++++.+++.+.+.++++|++.+
T Consensus 323 ~iIs~--~dl~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~ 396 (426)
T PRK10017 323 KILGA--CELTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPAL 396 (426)
T ss_pred HHHhh--CCEEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHH
Confidence 67777 89998753 5567778899999999997 3 344445578888754 7778899999999999999986777
Q ss_pred HHHHHHHHHHhhc
Q psy10494 114 KKAVKRASDISKT 126 (203)
Q Consensus 114 ~~~a~~~s~~~~~ 126 (203)
++..++.....+.
T Consensus 397 ~~~l~~~v~~~r~ 409 (426)
T PRK10017 397 NARLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666655
No 100
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.79 E-value=0.15 Score=50.59 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=70.4
Q ss_pred cccCCHHHH---hcC--CCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 28 FFFFLFVII---IAH--PNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 28 ~~~~pq~~i---L~~--~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
.+++|+.++ +.. ...++|+.- |=..++.||+++|+|+|+-...+ ....++....|..++.. ++++
T Consensus 553 lG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlLVdP~--D~ea 626 (1050)
T TIGR02468 553 PKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLLVDPH--DQQA 626 (1050)
T ss_pred cCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEEECCC--CHHH
Confidence 788888653 433 123688875 33588999999999999986543 12233344568888743 7889
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
+.++|.++++| +..++++.+-+.....+ ++-...+..+.+.+..
T Consensus 627 LA~AL~~LL~D-pelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~~ 670 (1050)
T TIGR02468 627 IADALLKLVAD-KQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIAS 670 (1050)
T ss_pred HHHHHHHHhhC-HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHH
Confidence 99999999998 77666555554443332 4544444455544443
No 101
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=95.70 E-value=0.12 Score=43.35 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=64.8
Q ss_pred ccccccccccccccCCHHH---HhcCCCccEEEec----CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEE
Q psy10494 17 KRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSY 88 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~ 88 (203)
.+++.. .+++|+.+ +++. +++++.. -| ..++.||+++|+|+|+....+ ....+.+...|..
T Consensus 223 ~~~v~~-----~G~~~~~~~~~~~~~--~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l 291 (335)
T cd03802 223 GPDIEY-----LGEVGGAEKAELLGN--ARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFL 291 (335)
T ss_pred CCcEEE-----eCCCCHHHHHHHHHh--CcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEE
Confidence 466666 89999864 4665 6676642 23 468999999999999886532 2233444447877
Q ss_pred EccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 89 MEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 89 l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
.+. .+++.+++.++... + ++++++... + .++....+..|++
T Consensus 292 ~~~----~~~l~~~l~~l~~~-~--~~~~~~~~~---~-~~s~~~~~~~~~~ 332 (335)
T cd03802 292 VDS----VEELAAAVARADRL-D--RAACRRRAE---R-RFSAARMVDDYLA 332 (335)
T ss_pred eCC----HHHHHHHHHHHhcc-H--HHHHHHHHH---H-hCCHHHHHHHHHH
Confidence 762 89999999998765 3 233333322 2 2455555555554
No 102
>PLN02275 transferase, transferring glycosyl groups
Probab=95.65 E-value=0.045 Score=47.85 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=51.7
Q ss_pred cccCCHHHH---hcCCCccEEEe----c--CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHH
Q psy10494 28 FFFFLFVII---IAHPNIKLFIT----Q--GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTE 97 (203)
Q Consensus 28 ~~~~pq~~i---L~~~~~~~~It----h--gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~ 97 (203)
.+|+|..++ ++. +|+++. . -| .+++.||+++|+|+|+....+ +.+.+++.+.|..++ +.+
T Consensus 292 ~~~~~~~~~~~~l~~--aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg----~~eiv~~g~~G~lv~----~~~ 361 (371)
T PLN02275 292 TMWLEAEDYPLLLGS--ADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSC----IGELVKDGKNGLLFS----SSS 361 (371)
T ss_pred cCCCCHHHHHHHHHh--CCEEEEeccccccccccHHHHHHHHCCCCEEEecCCC----hHHHccCCCCeEEEC----CHH
Confidence 347888765 666 899884 1 12 367999999999999975422 556677777898876 478
Q ss_pred HHHHHHHHHH
Q psy10494 98 TLFENIQEIL 107 (203)
Q Consensus 98 ~l~~ai~~ll 107 (203)
++.+++.+++
T Consensus 362 ~la~~i~~l~ 371 (371)
T PLN02275 362 ELADQLLELL 371 (371)
T ss_pred HHHHHHHHhC
Confidence 8999888764
No 103
>PHA01633 putative glycosyl transferase group 1
Probab=95.61 E-value=0.084 Score=46.07 Aligned_cols=88 Identities=15% Similarity=0.024 Sum_probs=55.9
Q ss_pred cccccccccccccccCCHH---HHhcCCCccEEEec----CChhHHHHHHHcCCceeeccc------ccch------HHH
Q psy10494 16 LKRNFTKFFFFFFFFFLFV---IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPF------FGDQ------NYN 76 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~---~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~------~~DQ------~~n 76 (203)
+++++....+ .++.++. ++++. +++|+.- |=.+++.||+++|+|+|+--. .+++ ..+
T Consensus 199 l~~~V~f~g~--~G~~~~~dl~~~y~~--aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~ 274 (335)
T PHA01633 199 VPANVHFVAE--FGHNSREYIFAFYGA--MDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSK 274 (335)
T ss_pred CCCcEEEEec--CCCCCHHHHHHHHHh--CCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCC
Confidence 4556555111 2555654 45666 8888874 336789999999999998622 2332 222
Q ss_pred HHHHH--HcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 77 VKIIR--RLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 77 a~~~~--~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
..... +.|.|..++ ..+++++.+++.+++..
T Consensus 275 v~~~~~~~~g~g~~~~--~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 275 VEEYYDKEHGQKWKIH--KFQIEDMANAIILAFEL 307 (335)
T ss_pred HHHhcCcccCceeeec--CCCHHHHHHHHHHHHhc
Confidence 22222 356776665 56899999999999544
No 104
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.46 E-value=0.15 Score=44.57 Aligned_cols=93 Identities=19% Similarity=0.241 Sum_probs=58.8
Q ss_pred HHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHH
Q psy10494 33 FVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDR 112 (203)
Q Consensus 33 q~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~ 112 (203)
-.++|.+ ++++|+-|| .+..||...|+|.|.+ +.++-...-+++.+.|+- .. .-+.+++.+.+++.+ .
T Consensus 242 ~~~Ll~~--a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll--~~--~~~~~ei~~~v~~~~----~ 309 (335)
T PF04007_consen 242 GLDLLYY--ADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLL--YH--STDPDEIVEYVRKNL----G 309 (335)
T ss_pred HHHHHHh--cCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCe--Ee--cCCHHHHHHHHHHhh----h
Confidence 3478988 999999887 6789999999999975 223322333556777762 32 226677776555443 3
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 113 YKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 113 y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
.+.+.+.... .++.+..++.|+.++
T Consensus 310 ~~~~~~~~~~------~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 310 KRKKIREKKS------EDPTDLIIEEIEEYI 334 (335)
T ss_pred cccchhhhhc------cCHHHHHHHHHHHhh
Confidence 3333333211 367788777777653
No 105
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.29 E-value=0.071 Score=49.22 Aligned_cols=97 Identities=11% Similarity=0.074 Sum_probs=68.3
Q ss_pred cccCCH---HHHhcCCCccEEEecC---ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHH
Q psy10494 28 FFFFLF---VIIIAHPNIKLFITQG---GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFE 101 (203)
Q Consensus 28 ~~~~pq---~~iL~~~~~~~~Ithg---G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ 101 (203)
.++.+. ..++.+ ++++|.-+ |.++..||+.+|+|+| .......++..--|..+. +.+++.+
T Consensus 414 ~gy~~e~dl~~~~~~--arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~~~l~~ 480 (519)
T TIGR03713 414 TTLTNEEDLISALDK--LRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DISELLK 480 (519)
T ss_pred EecCCHHHHHHHHhh--heEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CHHHHHH
Confidence 777773 246666 99999876 6779999999999999 223345666667787773 7789999
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 102 NIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 102 ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
++...|.+ ++-.+.+..-|-...++ ++....+-.|-
T Consensus 481 al~~~L~~-~~~wn~~~~~sy~~~~~-yS~~~i~~kW~ 516 (519)
T TIGR03713 481 ALDYYLDN-LKNWNYSLAYSIKLIDD-YSSENIIERLN 516 (519)
T ss_pred HHHHHHhC-HHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 99999998 76555555555554443 44444444553
No 106
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=95.25 E-value=0.046 Score=47.78 Aligned_cols=98 Identities=15% Similarity=0.248 Sum_probs=59.4
Q ss_pred cccCCH---HHHhcCCCccEEEecCChhHHH-HHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHH
Q psy10494 28 FFFFLF---VIIIAHPNIKLFITQGGLQSLQ-EAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103 (203)
Q Consensus 28 ~~~~pq---~~iL~~~~~~~~IthgG~~s~~-Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 103 (203)
.+-++. ..+|.+ ++++|+..| +++ ||.+.|+|+|.+=-.++.+. ....|..+.+. .+++++.+++
T Consensus 244 ~~~l~~~~~l~ll~~--a~~vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe----~r~~~~nvlv~---~~~~~I~~ai 312 (346)
T PF02350_consen 244 IEPLGYEEYLSLLKN--ADLVVGDSS--GIQEEAPSLGKPVVNIRDSGERQE----GRERGSNVLVG---TDPEAIIQAI 312 (346)
T ss_dssp E----HHHHHHHHHH--ESEEEESSH--HHHHHGGGGT--EEECSSS-S-HH----HHHTTSEEEET---SSHHHHHHHH
T ss_pred ECCCCHHHHHHHHhc--ceEEEEcCc--cHHHHHHHhCCeEEEecCCCCCHH----HHhhcceEEeC---CCHHHHHHHH
Confidence 444444 457777 999999999 666 99999999999922222222 23456666643 5899999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 104 QEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 104 ~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
++++++ ..+..++.....-+.+. ++.+++++.+
T Consensus 313 ~~~l~~-~~~~~~~~~~~npYgdG--~as~rI~~~L 345 (346)
T PF02350_consen 313 EKALSD-KDFYRKLKNRPNPYGDG--NASERIVEIL 345 (346)
T ss_dssp HHHHH--HHHHHHHHCS--TT-SS---HHHHHHHHH
T ss_pred HHHHhC-hHHHHhhccCCCCCCCC--cHHHHHHHhh
Confidence 999987 66666665544445442 4556655544
No 107
>PLN02949 transferase, transferring glycosyl groups
Probab=95.14 E-value=0.14 Score=46.52 Aligned_cols=86 Identities=13% Similarity=-0.017 Sum_probs=54.1
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec---CC-hhHHHHHHHcCCceeeccccc---chHHHHHHHHHcC-
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ---GG-LQSLQEAVHFEVPVIGIPFFG---DQNYNVKIIRRLG- 84 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith---gG-~~s~~Eal~~gvP~i~iP~~~---DQ~~na~~~~~~G- 84 (203)
+++++.. .+++|+.+ +|.. +++++.- -| ..++.||+++|+|+|+....+ |-..+. ..|
T Consensus 333 L~~~V~f-----~g~v~~~el~~ll~~--a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~ 401 (463)
T PLN02949 333 LDGDVEF-----HKNVSYRDLVRLLGG--AVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQ 401 (463)
T ss_pred CCCcEEE-----eCCCCHHHHHHHHHh--CcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCc
Confidence 4556666 88888765 5666 7777732 22 458999999999999986533 111110 002
Q ss_pred ceEEEccCCCCHHHHHHHHHHHHhchHHHHHH
Q psy10494 85 IGSYMEFEDIHTETLFENIQEILNNYDRYKKA 116 (203)
Q Consensus 85 ~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~ 116 (203)
.|...+ +.+++.+++.+++++.+..+++
T Consensus 402 tG~l~~----~~~~la~ai~~ll~~~~~~r~~ 429 (463)
T PLN02949 402 TGFLAT----TVEEYADAILEVLRMRETERLE 429 (463)
T ss_pred ccccCC----CHHHHHHHHHHHHhCCHHHHHH
Confidence 343332 7899999999999731443333
No 108
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.10 E-value=0.095 Score=46.31 Aligned_cols=106 Identities=13% Similarity=0.162 Sum_probs=79.7
Q ss_pred ccccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHH
Q psy10494 27 FFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEI 106 (203)
Q Consensus 27 ~~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~l 106 (203)
+.+|.+..-++.+ +.+++|-.|.. .-||-..|+|++++=...+++. ..+.|.-+.+. .+.+.+.+++.++
T Consensus 269 pl~~~~f~~L~~~--a~~iltDSGgi-qEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg---~~~~~i~~~~~~l 338 (383)
T COG0381 269 PLGYLDFHNLMKN--AFLILTDSGGI-QEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVG---TDEENILDAATEL 338 (383)
T ss_pred CcchHHHHHHHHh--ceEEEecCCch-hhhHHhcCCcEEeeccCCCCcc----ceecCceEEeC---ccHHHHHHHHHHH
Confidence 4677888888888 89999998753 6799999999999977777776 23445555554 3679999999999
Q ss_pred HhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy10494 107 LNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKA 145 (203)
Q Consensus 107 l~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~ 145 (203)
+++ ++..+++.+...-+.+- .+.++.++.+..-...
T Consensus 339 l~~-~~~~~~m~~~~npYgdg--~as~rIv~~l~~~~~~ 374 (383)
T COG0381 339 LED-EEFYERMSNAKNPYGDG--NASERIVEILLNYFDS 374 (383)
T ss_pred hhC-hHHHHHHhcccCCCcCc--chHHHHHHHHHHHhhh
Confidence 999 99999888877777663 3556666665554443
No 109
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=95.04 E-value=0.12 Score=47.04 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=61.6
Q ss_pred cccccccCCHHHHh-cCCCccEEEe---cCChhHHHHHHHcCCceeeccccc-chHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 24 FFFFFFFFLFVIII-AHPNIKLFIT---QGGLQSLQEAVHFEVPVIGIPFFG-DQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 24 ~~~~~~~~pq~~iL-~~~~~~~~It---hgG~~s~~Eal~~gvP~i~iP~~~-DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
|..+.++.|+.+-| .+..+|+++. .+|..|++||++.|||+|.+|--. -...-+..+...|+.-.+-. +.++
T Consensus 343 Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~e 419 (468)
T PF13844_consen 343 RIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEE 419 (468)
T ss_dssp GEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHH
T ss_pred hEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHH
Confidence 34447777776533 2344888774 578999999999999999998432 33445566777888866553 5666
Q ss_pred HHHHHHHHHhchHHHHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 99 LFENIQEILNNYDRYKKAVKR-ASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~-~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
..+.--++-+| ++++++.++ +.+.....|.--....+.-+|.++
T Consensus 420 Yv~~Av~La~D-~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~ 464 (468)
T PF13844_consen 420 YVEIAVRLATD-PERLRALRAKLRDRRSKSPLFDPKRFARNLEAAY 464 (468)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-HHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 66666677777 665555443 334444444433445555555544
No 110
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=94.99 E-value=0.033 Score=40.85 Aligned_cols=78 Identities=26% Similarity=0.247 Sum_probs=46.7
Q ss_pred ccccccccccccccCCHH-HHhcCCCccEEEecC----C-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEc
Q psy10494 17 KRNFTKFFFFFFFFFLFV-IIIAHPNIKLFITQG----G-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq~-~iL~~~~~~~~Ithg----G-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
.+|+.. .+|+|.- ++++. +++.+.-. | .+++.|++.+|+|+|+.+. ......+..+.|..+.
T Consensus 52 ~~~v~~-----~g~~~e~~~~l~~--~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~~ 119 (135)
T PF13692_consen 52 RPNVRF-----HGFVEELPEILAA--ADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLVA 119 (135)
T ss_dssp HCTEEE-----E-S-HHHHHHHHC---SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE-T
T ss_pred CCCEEE-----cCCHHHHHHHHHh--CCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEEC
Confidence 557776 7777542 56777 66665522 2 4899999999999999865 1222334467787762
Q ss_pred cCCCCHHHHHHHHHHHHhc
Q psy10494 91 FEDIHTETLFENIQEILNN 109 (203)
Q Consensus 91 ~~~~~~~~l~~ai~~ll~~ 109 (203)
-+++++.+++.++++|
T Consensus 120 ---~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 ---NDPEELAEAIERLLND 135 (135)
T ss_dssp ---T-HHHHHHHHHHHHH-
T ss_pred ---CCHHHHHHHHHHHhcC
Confidence 2889999999999875
No 111
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.80 E-value=0.58 Score=40.82 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=50.8
Q ss_pred cccccccccccccCCHHH---HhcCCCccEEEec--------CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCc
Q psy10494 18 RNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ--------GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGI 85 (203)
Q Consensus 18 ~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith--------gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~ 85 (203)
+|++. .+++|..+ .+.+ +++++.- ++ -+.+.|++++|+|+|..++. ...+..+.
T Consensus 254 ~nV~~-----~G~~~~~~l~~~l~~--~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~ 319 (373)
T cd04950 254 PNVHY-----LGPKPYKELPAYLAG--FDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDE 319 (373)
T ss_pred CCEEE-----eCCCCHHHHHHHHHh--CCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCc
Confidence 68887 88888765 4666 7776642 22 24589999999999988641 12223333
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
+.... + +.+++.++|.+++.+
T Consensus 320 ~~~~~-~--d~~~~~~ai~~~l~~ 340 (373)
T cd04950 320 VVLIA-D--DPEEFVAAIEKALLE 340 (373)
T ss_pred EEEeC-C--CHHHHHHHHHHHHhc
Confidence 33332 2 789999999997755
No 112
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=94.61 E-value=0.12 Score=46.02 Aligned_cols=80 Identities=14% Similarity=0.004 Sum_probs=54.9
Q ss_pred cccccccccccccccCCHHH---HhcCCCccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHH---HcCc
Q psy10494 16 LKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR---RLGI 85 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~---~~G~ 85 (203)
+.+++.. .+++|+.+ +|.. ++++++. +=..++.||+++|+|+|+....+.- ...++ +...
T Consensus 303 l~~~V~f-----~g~v~~~~l~~~l~~--adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~g~~ 372 (419)
T cd03806 303 LEDKVEF-----VVNAPFEELLEELST--ASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDGGPT 372 (419)
T ss_pred CCCeEEE-----ecCCCHHHHHHHHHh--CeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCCCCc
Confidence 3456666 88888865 5666 7887743 2246889999999999987543211 11222 3457
Q ss_pred eEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 86 GSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 86 G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
|...+ +++++.+++.+++++
T Consensus 373 G~l~~----d~~~la~ai~~ll~~ 392 (419)
T cd03806 373 GFLAS----TAEEYAEAIEKILSL 392 (419)
T ss_pred eEEeC----CHHHHHHHHHHHHhC
Confidence 76642 789999999999986
No 113
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=94.40 E-value=0.14 Score=46.05 Aligned_cols=99 Identities=17% Similarity=0.077 Sum_probs=57.5
Q ss_pred HhcCCCccEEEec----CChhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 36 IIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 36 iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
+++. +++++.. +-..+.+||+.+|+|+|+....+ |...+.....+.|.|..++.. +.+++.+++.++++.
T Consensus 367 ~~~~--aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~~ 442 (476)
T cd03791 367 IYAG--ADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALAL 442 (476)
T ss_pred HHHh--CCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHHH
Confidence 5555 8888854 23467899999999999775432 222111111135589888743 689999999998864
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 110 YDRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 110 ~~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
..-.+...++++....+.++-...+..++
T Consensus 443 -~~~~~~~~~~~~~~~~~~fsw~~~a~~~~ 471 (476)
T cd03791 443 -YRDPEAWRKLQRNAMAQDFSWDRSAKEYL 471 (476)
T ss_pred -HcCHHHHHHHHHHHhccCCChHHHHHHHH
Confidence 21123333333333333344434444443
No 114
>PHA01630 putative group 1 glycosyl transferase
Probab=93.72 E-value=0.88 Score=39.46 Aligned_cols=103 Identities=15% Similarity=0.191 Sum_probs=57.7
Q ss_pred CCHHH---HhcCCCccEEEe--c--CChhHHHHHHHcCCceeeccccc--chHHH---HHHHH-----------HcCceE
Q psy10494 31 FLFVI---IIAHPNIKLFIT--Q--GGLQSLQEAVHFEVPVIGIPFFG--DQNYN---VKIIR-----------RLGIGS 87 (203)
Q Consensus 31 ~pq~~---iL~~~~~~~~It--h--gG~~s~~Eal~~gvP~i~iP~~~--DQ~~n---a~~~~-----------~~G~G~ 87 (203)
+|..+ ++.. +++|+. + |...++.||+++|+|+|+....+ |...+ ...+. ..++|.
T Consensus 198 v~~~~l~~~y~~--aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 198 LPDDDIYSLFAG--CDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred CCHHHHHHHHHh--CCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 67654 4666 888873 2 22678999999999999986533 32221 11010 023455
Q ss_pred EEccCCCCHHHHHHHHHHHHhch--HHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q psy10494 88 YMEFEDIHTETLFENIQEILNNY--DRYKKAVKRASDISKTQMMSPRDTAVWWV 139 (203)
Q Consensus 88 ~l~~~~~~~~~l~~ai~~ll~~~--~~y~~~a~~~s~~~~~~p~~~~~~a~~~i 139 (203)
.++. +.+++.+.+.+++.|. +.+++.+.+-++...++ ++-...+-.|.
T Consensus 276 ~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~-fs~~~ia~k~~ 325 (331)
T PHA01630 276 FLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYREN-YSYNAIAKMWE 325 (331)
T ss_pred ccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Confidence 5443 5677788888888751 24555555544444433 44333333333
No 115
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=93.03 E-value=1 Score=40.55 Aligned_cols=77 Identities=14% Similarity=0.057 Sum_probs=49.6
Q ss_pred cccCCHH---HHhcCCCccEEEecC---C-hhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 28 FFFFLFV---IIIAHPNIKLFITQG---G-LQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~Ithg---G-~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
....+.. .+++. +++++.-. | ..+.+||+++|+|.|+-...+ |...+...-...+.|..++. -++++
T Consensus 351 ~~~~~~~~~~~~~~~--aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~--~d~~~ 426 (473)
T TIGR02095 351 IIGYDEALAHLIYAG--ADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEE--YDPGA 426 (473)
T ss_pred EEcCCHHHHHHHHHh--CCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCC--CCHHH
Confidence 3444554 35666 88888642 2 358899999999999875432 21111100012278888874 37889
Q ss_pred HHHHHHHHHh
Q psy10494 99 LFENIQEILN 108 (203)
Q Consensus 99 l~~ai~~ll~ 108 (203)
+.++|.+++.
T Consensus 427 la~~i~~~l~ 436 (473)
T TIGR02095 427 LLAALSRALR 436 (473)
T ss_pred HHHHHHHHHH
Confidence 9999999987
No 116
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=92.85 E-value=2.1 Score=40.00 Aligned_cols=74 Identities=19% Similarity=0.032 Sum_probs=49.5
Q ss_pred ccccccccccccccCCH-HHHhcCCCccEEEec---CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEcc
Q psy10494 17 KRNFTKFFFFFFFFFLF-VIIIAHPNIKLFITQ---GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEF 91 (203)
Q Consensus 17 p~n~~~~~~~~~~~~pq-~~iL~~~~~~~~Ith---gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~ 91 (203)
.+++.. .+|..+ .+++.. +++|+.. -| .+++.||+++|+|+|+.... .+...+.+-..|..++.
T Consensus 454 ~d~V~F-----lG~~~Dv~~~Laa--ADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~ 522 (578)
T PRK15490 454 LERILF-----VGASRDVGYWLQK--MNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDD 522 (578)
T ss_pred CCcEEE-----CCChhhHHHHHHh--CCEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECC
Confidence 355555 666433 245776 8898863 34 68999999999999988653 34455666778988875
Q ss_pred CCCCHHHHHHHH
Q psy10494 92 EDIHTETLFENI 103 (203)
Q Consensus 92 ~~~~~~~l~~ai 103 (203)
. +.+++.+++
T Consensus 523 ~--D~~aLa~ai 532 (578)
T PRK15490 523 A--QTVNLDQAC 532 (578)
T ss_pred C--ChhhHHHHH
Confidence 4 344444444
No 117
>PRK14098 glycogen synthase; Provisional
Probab=92.68 E-value=0.65 Score=42.48 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=53.9
Q ss_pred cccccccccccccccCCHH---HHhcCCCccEEEecCC----hhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCce
Q psy10494 16 LKRNFTKFFFFFFFFFLFV---IIIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIG 86 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq~---~iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G 86 (203)
+|+++.. .+.++.. .+++. +|+|+...= ..+.+||+.+|+|.|+....+ |...+ ..++.+.|
T Consensus 360 ~~~~V~~-----~g~~~~~~~~~~~a~--aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G 430 (489)
T PRK14098 360 HPEQVSV-----QTEFTDAFFHLAIAG--LDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSG 430 (489)
T ss_pred CCCCEEE-----EEecCHHHHHHHHHh--CCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCce
Confidence 4556655 6777764 46666 899886542 357899999999888775432 22111 11124678
Q ss_pred EEEccCCCCHHHHHHHHHHHH
Q psy10494 87 SYMEFEDIHTETLFENIQEIL 107 (203)
Q Consensus 87 ~~l~~~~~~~~~l~~ai~~ll 107 (203)
..++. .+++++.+++.+++
T Consensus 431 ~l~~~--~d~~~la~ai~~~l 449 (489)
T PRK14098 431 FIFHD--YTPEALVAKLGEAL 449 (489)
T ss_pred eEeCC--CCHHHHHHHHHHHH
Confidence 88764 47899999999876
No 118
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=92.48 E-value=0.27 Score=43.23 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=45.5
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHH
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRY 113 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y 113 (203)
..++.+ ++++||.++.+. .||...|+|+|.+- +-+ ...+.|..+.+- ..++++|.+++.+++ + +.+
T Consensus 276 l~Ll~~--a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~v--g~~~~~I~~a~~~~~-~-~~~ 341 (365)
T TIGR03568 276 LSLLKN--ADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDV--DPDKEEIVKAIEKLL-D-PAF 341 (365)
T ss_pred HHHHHh--CCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEe--CCCHHHHHHHHHHHh-C-hHH
Confidence 356767 999999986555 89999999999772 211 112334443321 347899999999954 5 444
Q ss_pred HHH
Q psy10494 114 KKA 116 (203)
Q Consensus 114 ~~~ 116 (203)
.++
T Consensus 342 ~~~ 344 (365)
T TIGR03568 342 KKS 344 (365)
T ss_pred HHH
Confidence 444
No 119
>PRK00654 glgA glycogen synthase; Provisional
Probab=92.26 E-value=0.9 Score=41.03 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=46.8
Q ss_pred HHhcCCCccEEEec----CChhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHh
Q psy10494 35 IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILN 108 (203)
Q Consensus 35 ~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~ 108 (203)
.+++. +++|+.- |-..+.+||+.+|+|.|+....+ |...+...-.+.+.|..++.. +++++.+++.++++
T Consensus 352 ~~~~~--aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 352 RIYAG--ADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred HHHhh--CCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 35666 8898865 22468999999999999875432 221111001233778888743 78899999999886
No 120
>PLN00142 sucrose synthase
Probab=91.43 E-value=2 Score=41.80 Aligned_cols=75 Identities=16% Similarity=0.124 Sum_probs=51.6
Q ss_pred ccEEEec---CC-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHH----HhchHHH
Q psy10494 42 IKLFITQ---GG-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEI----LNNYDRY 113 (203)
Q Consensus 42 ~~~~Ith---gG-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~l----l~~~~~y 113 (203)
.++|+.- -| ..++.||+++|+|+|+....+ ....+++-..|..++.. +++++.++|.++ ++| ++.
T Consensus 667 aDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P~--D~eaLA~aI~~lLekLl~D-p~l 739 (815)
T PLN00142 667 KGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDPY--HGDEAANKIADFFEKCKED-PSY 739 (815)
T ss_pred CCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCC-HHH
Confidence 5677764 23 568999999999999876543 33445555679888754 677777777654 467 777
Q ss_pred HHHHHHHHHH
Q psy10494 114 KKAVKRASDI 123 (203)
Q Consensus 114 ~~~a~~~s~~ 123 (203)
++++.+-+..
T Consensus 740 r~~mg~~Ar~ 749 (815)
T PLN00142 740 WNKISDAGLQ 749 (815)
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 121
>PLN02846 digalactosyldiacylglycerol synthase
Probab=91.36 E-value=0.96 Score=41.24 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=53.1
Q ss_pred ccccCCHHHHhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 27 FFFFFLFVIIIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 27 ~~~~~pq~~iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
+.++.+..+++.. .|+|+.-+ -.+++.||+++|+|+|+....+ | ..+.+-+.|...+ +.+++.++
T Consensus 288 f~G~~~~~~~~~~--~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHD--YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHh--CCEEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHH
Confidence 3566666678887 89998874 4688999999999999985433 1 3344445554443 67899999
Q ss_pred HHHHHhc
Q psy10494 103 IQEILNN 109 (203)
Q Consensus 103 i~~ll~~ 109 (203)
+.+++.+
T Consensus 357 i~~~l~~ 363 (462)
T PLN02846 357 TLKALAE 363 (462)
T ss_pred HHHHHcc
Confidence 9999986
No 122
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=90.83 E-value=2.6 Score=41.01 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=53.0
Q ss_pred ccEEEec----CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHH----hchHHH
Q psy10494 42 IKLFITQ----GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEIL----NNYDRY 113 (203)
Q Consensus 42 ~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll----~~~~~y 113 (203)
.++|+.- +-..++.||+++|+|+|+-...+ ....+++-..|..++.. +++++.+++.+++ .| ++.
T Consensus 644 adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp~--D~eaLA~aL~~ll~kll~d-p~~ 716 (784)
T TIGR02470 644 KGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDPY--HGEEAAEKIVDFFEKCDED-PSY 716 (784)
T ss_pred CcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCCC--CHHHHHHHHHHHHHHhcCC-HHH
Confidence 4677754 33679999999999999875543 34455556679888754 6788999998876 46 666
Q ss_pred HHHHHHHHHH
Q psy10494 114 KKAVKRASDI 123 (203)
Q Consensus 114 ~~~a~~~s~~ 123 (203)
++++.+-+..
T Consensus 717 ~~~ms~~a~~ 726 (784)
T TIGR02470 717 WQKISQGGLQ 726 (784)
T ss_pred HHHHHHHHHH
Confidence 6665554433
No 123
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.66 E-value=5.6 Score=31.98 Aligned_cols=82 Identities=16% Similarity=0.218 Sum_probs=51.3
Q ss_pred cccCCH---HHHhcCCCccEEEec---CCh-hHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFFLF---VIIIAHPNIKLFITQ---GGL-QSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~pq---~~iL~~~~~~~~Ith---gG~-~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+++|. ..++.. +++++.. .|. .++.|++++|+|++..+.. .....+.+.+.|..... . +.+++.
T Consensus 262 ~g~~~~~~~~~~~~~--~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~~~g~~~~~-~-~~~~~~ 333 (381)
T COG0438 262 LGYVPDEELAELLAS--ADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDGETGLLVPP-G-DVEELA 333 (381)
T ss_pred ecccCHHHHHHHHHh--CCEEEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCCCceEecCC-C-CHHHHH
Confidence 788883 345655 6676666 243 4569999999999877553 12222223324653332 2 689999
Q ss_pred HHHHHHHhchHHHHHHHH
Q psy10494 101 ENIQEILNNYDRYKKAVK 118 (203)
Q Consensus 101 ~ai~~ll~~~~~y~~~a~ 118 (203)
+++..++++ .+..+...
T Consensus 334 ~~i~~~~~~-~~~~~~~~ 350 (381)
T COG0438 334 DALEQLLED-PELREELG 350 (381)
T ss_pred HHHHHHhcC-HHHHHHHH
Confidence 999999988 64444443
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.31 E-value=0.42 Score=37.10 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=36.8
Q ss_pred cccccccccccccccCCH-HH---HhcCCCccEEEecCC----hhHHHHHHHcCCceeeccccc
Q psy10494 16 LKRNFTKFFFFFFFFFLF-VI---IIAHPNIKLFITQGG----LQSLQEAVHFEVPVIGIPFFG 71 (203)
Q Consensus 16 lp~n~~~~~~~~~~~~pq-~~---iL~~~~~~~~IthgG----~~s~~Eal~~gvP~i~iP~~~ 71 (203)
..+|+.. .++++. +. ++. .++++++... .+++.||+.+|+|+|+.+..+
T Consensus 159 ~~~~v~~-----~~~~~~~~~~~~~~~--~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 159 LLDRVIF-----LGGLDPEELLALLLA--AADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CcccEEE-----eCCCCcHHHHHHHhh--cCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 4567777 777633 32 333 3899998887 799999999999999987644
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=90.31 E-value=2.4 Score=37.68 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=41.8
Q ss_pred HHhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHH
Q psy10494 35 IIIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQ 104 (203)
Q Consensus 35 ~iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 104 (203)
++++. +++|+... -.+++.||+++|+|+|+....+ - .+.+ +.+.|..++.+ +.+++.++++
T Consensus 302 ~~y~~--aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG-~---~Eiv-~~~~G~lv~~~--d~~~La~~~~ 366 (405)
T PRK10125 302 SALNQ--MDALVFSSRVDNYPLILCEALSIGVPVIATHSDA-A---REVL-QKSGGKTVSEE--EVLQLAQLSK 366 (405)
T ss_pred HHHHh--CCEEEECCccccCcCHHHHHHHcCCCEEEeCCCC-h---HHhE-eCCcEEEECCC--CHHHHHhccC
Confidence 34555 78887643 3688999999999999998765 1 1222 23579888755 6677776543
No 126
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.94 E-value=2.6 Score=36.56 Aligned_cols=98 Identities=20% Similarity=0.236 Sum_probs=64.3
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHH---------------HHHHcCCceeecccccchHH--HHHHHHH-cCceEEE
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQ---------------EAVHFEVPVIGIPFFGDQNY--NVKIIRR-LGIGSYM 89 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~---------------Eal~~gvP~i~iP~~~DQ~~--na~~~~~-~G~G~~l 89 (203)
.+|-|..|++...+|.+..+..-...+. .++-.|+|+|.+|-.+-|+. -|++-.+ .|+.+.+
T Consensus 282 ~gWq~~ad~~~kdnc~l~lsqqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 282 QGWQPLADRFGKDNCSLWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred cCcchhhhhhccCceEEEEeHHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 6777777777766777777654433332 34567999999999988875 3444434 7777766
Q ss_pred ccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCC
Q psy10494 90 EFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQM 128 (203)
Q Consensus 90 ~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p 128 (203)
-.. ....-..+.++++.| +.+.+..+.-...--.+|
T Consensus 362 v~~--~aq~a~~~~q~ll~d-p~r~~air~nGqrRiGqa 397 (412)
T COG4370 362 VRP--EAQAAAQAVQELLGD-PQRLTAIRHNGQRRIGQA 397 (412)
T ss_pred cCC--chhhHHHHHHHHhcC-hHHHHHHHhcchhhccCc
Confidence 543 333334445569999 999988886555444443
No 127
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.88 E-value=3.5 Score=37.44 Aligned_cols=101 Identities=14% Similarity=0.108 Sum_probs=63.8
Q ss_pred cccCCHHHHhcC-CCccEEEec---CC-hhHHHHHHHcCCc----eeecccccchHHHHHHHHHcCceEEEccCCCCHHH
Q psy10494 28 FFFFLFVIIIAH-PNIKLFITQ---GG-LQSLQEAVHFEVP----VIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98 (203)
Q Consensus 28 ~~~~pq~~iL~~-~~~~~~Ith---gG-~~s~~Eal~~gvP----~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~ 98 (203)
.+.+|+.++.+. ..+++|+.- -| ..++.||+++|+| +|+--+.+-... + +-|..+++ .+.++
T Consensus 341 ~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~----l---~~gllVnP--~d~~~ 411 (456)
T TIGR02400 341 NRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQE----L---NGALLVNP--YDIDG 411 (456)
T ss_pred cCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHH----h---CCcEEECC--CCHHH
Confidence 345667765322 348998864 36 4678899999999 666655442221 2 24777764 47899
Q ss_pred HHHHHHHHHhc-hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 99 LFENIQEILNN-YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 99 l~~ai~~ll~~-~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
+.++|.+++++ .++.++++.++.+..... + +.+|.+..+
T Consensus 412 lA~aI~~aL~~~~~er~~r~~~~~~~v~~~--~----~~~W~~~~l 451 (456)
T TIGR02400 412 MADAIARALTMPLEEREERHRAMMDKLRKN--D----VQRWREDFL 451 (456)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhC--C----HHHHHHHHH
Confidence 99999999975 134555566666655442 3 355666544
No 128
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=89.49 E-value=0.93 Score=39.45 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=63.4
Q ss_pred ccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHH----HHHHcCceEEEccCCCCHHHHHHHHH
Q psy10494 29 FFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK----IIRRLGIGSYMEFEDIHTETLFENIQ 104 (203)
Q Consensus 29 ~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~----~~~~~G~G~~l~~~~~~~~~l~~ai~ 104 (203)
+..+-.++|.. +++.||-- ...+.|.+..++|++......|+....+ -.++...|.... +.++|.++|+
T Consensus 259 ~~~~~~~ll~~--aDiLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~rg~~~~~~~~~pg~~~~----~~~eL~~~i~ 331 (369)
T PF04464_consen 259 DNEDIYDLLAA--ADILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKERGFYFDYEEDLPGPIVY----NFEELIEAIE 331 (369)
T ss_dssp T-S-HHHHHHT---SEEEESS--THHHHHGGGT--EEEE-TTTTTTTTTSSBSS-TTTSSSS-EES----SHHHHHHHHT
T ss_pred CCCCHHHHHHh--cCEEEEec-hhHHHHHHHhCCCEEEEeccHHHHhhccCCCCchHhhCCCceeC----CHHHHHHHHH
Confidence 44467789999 99999997 4578999999999998876555442210 011223333332 7799999999
Q ss_pred HHHhchHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Q psy10494 105 EILNNYDRYKKAVKRASDISKTQ-MMSPRDTAVWWVE 140 (203)
Q Consensus 105 ~ll~~~~~y~~~a~~~s~~~~~~-p~~~~~~a~~~ie 140 (203)
+++++.+.++++.++..+.+... ..++.++++.+|.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 332 NIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp THHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 99877345566666666666432 2356777766654
No 129
>PLN02501 digalactosyldiacylglycerol synthase
Probab=88.71 E-value=1.4 Score=42.31 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=51.5
Q ss_pred cccCCHH-HHhcCCCccEEEecC----ChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 28 FFFFLFV-IIIAHPNIKLFITQG----GLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 28 ~~~~pq~-~iL~~~~~~~~Ithg----G~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
.++.+.. ++++. +++|+.-. =.+++.||+++|+|+|+....+... +..-+.|. +. -+.+++.++
T Consensus 606 LG~~dd~~~lyas--aDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGl-l~---~D~EafAeA 674 (794)
T PLN02501 606 LKGRDHADDSLHG--YKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCL-TY---KTSEDFVAK 674 (794)
T ss_pred cCCCCCHHHHHHh--CCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeE-ec---CCHHHHHHH
Confidence 5666644 47777 88887643 2688999999999999986654321 22223333 22 268999999
Q ss_pred HHHHHhchHHHH
Q psy10494 103 IQEILNNYDRYK 114 (203)
Q Consensus 103 i~~ll~~~~~y~ 114 (203)
+.+++.+ +.-+
T Consensus 675 I~~LLsd-~~~r 685 (794)
T PLN02501 675 VKEALAN-EPQP 685 (794)
T ss_pred HHHHHhC-chhh
Confidence 9999988 6533
No 130
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=87.59 E-value=1.6 Score=39.53 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=59.0
Q ss_pred cccCCH--HHHhcCCCccEEEecCC--hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHH
Q psy10494 28 FFFFLF--VIIIAHPNIKLFITQGG--LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103 (203)
Q Consensus 28 ~~~~pq--~~iL~~~~~~~~IthgG--~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai 103 (203)
.++.|+ .+++....+-+-|+||+ ..++.||+.+|+|+++.=.... +...+.. |-....+ +.+++.++|
T Consensus 334 ~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~~i~~---g~l~~~~--~~~~m~~~i 405 (438)
T TIGR02919 334 PNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRDFIAS---ENIFEHN--EVDQLISKL 405 (438)
T ss_pred CCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---CcccccC---CceecCC--CHHHHHHHH
Confidence 566662 46888855556677876 6899999999999998843211 1122222 5455533 679999999
Q ss_pred HHHHhchHHHHHHHHHHHHHhhc
Q psy10494 104 QEILNNYDRYKKAVKRASDISKT 126 (203)
Q Consensus 104 ~~ll~~~~~y~~~a~~~s~~~~~ 126 (203)
.+++++ ++-.+.+....+....
T Consensus 406 ~~lL~d-~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 406 KDLLND-PNQFRELLEQQREHAN 427 (438)
T ss_pred HHHhcC-HHHHHHHHHHHHHHhc
Confidence 999998 7544444444444443
No 131
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=85.13 E-value=2.2 Score=35.99 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.2
Q ss_pred CccEEEecCChhHHHHHHH------cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH------FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~------~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
+++++|+-||=||+..++. .++|++++.. |..=-..+.+++++.+++++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~----------------G~lGFL~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT----------------GHLGFYTDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC----------------CCceecccCCHHHHHHHHHHHHcC
Confidence 4899999999999999986 4889888852 322122345677788888888765
No 132
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=84.57 E-value=1.2 Score=34.88 Aligned_cols=33 Identities=27% Similarity=0.531 Sum_probs=24.0
Q ss_pred cCCCccEEEecCChhHHHHHHHcCCceeeccccc
Q psy10494 38 AHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG 71 (203)
Q Consensus 38 ~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~ 71 (203)
.+..++++||+||...+..... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 6788999999999888888877 99999999855
No 133
>PLN02939 transferase, transferring glycosyl groups
Probab=83.59 E-value=9.3 Score=38.02 Aligned_cols=86 Identities=16% Similarity=0.066 Sum_probs=55.7
Q ss_pred cccCCHH---HHhcCCCccEEEec----CChhHHHHHHHcCCceeeccccc--chHHH--HHHH-HHcCceEEEccCCCC
Q psy10494 28 FFFFLFV---IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYN--VKII-RRLGIGSYMEFEDIH 95 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~n--a~~~-~~~G~G~~l~~~~~~ 95 (203)
..+.+.. .+++. +++|+.. +-..+.+||+.+|+|.|+....+ |...+ ...+ +.-+-|..++. .+
T Consensus 842 lG~~de~lah~IYAa--ADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~--~D 917 (977)
T PLN02939 842 ILKYDEALSHSIYAA--SDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLT--PD 917 (977)
T ss_pred EeccCHHHHHHHHHh--CCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecC--CC
Confidence 6677664 46776 9999864 23568999999999999876543 32211 1111 12356877764 37
Q ss_pred HHHHHHHHHHHHh----chHHHHHHHH
Q psy10494 96 TETLFENIQEILN----NYDRYKKAVK 118 (203)
Q Consensus 96 ~~~l~~ai~~ll~----~~~~y~~~a~ 118 (203)
++++.+++.+++. | +..+.++.
T Consensus 918 ~eaLa~AL~rAL~~~~~d-pe~~~~L~ 943 (977)
T PLN02939 918 EQGLNSALERAFNYYKRK-PEVWKQLV 943 (977)
T ss_pred HHHHHHHHHHHHHHhccC-HHHHHHHH
Confidence 8889999988875 5 55544443
No 134
>PLN02316 synthase/transferase
Probab=83.20 E-value=11 Score=38.01 Aligned_cols=71 Identities=10% Similarity=0.054 Sum_probs=47.5
Q ss_pred HHhcCCCccEEEec----CChhHHHHHHHcCCceeeccccc--chHHHHH----HHHH---cCceEEEccCCCCHHHHHH
Q psy10494 35 IIIAHPNIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYNVK----IIRR---LGIGSYMEFEDIHTETLFE 101 (203)
Q Consensus 35 ~iL~~~~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~----~~~~---~G~G~~l~~~~~~~~~l~~ 101 (203)
.+++. +|+|+.. +=..+.+||+.+|+|.|+-...+ |...... ..+. .+-|...+ ..+++.+..
T Consensus 915 ~iyaa--ADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~--~~d~~aLa~ 990 (1036)
T PLN02316 915 LIYAG--ADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFD--GADAAGVDY 990 (1036)
T ss_pred HHHHh--CcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeC--CCCHHHHHH
Confidence 46666 9999954 33578999999999988765432 3222210 0111 25688776 447889999
Q ss_pred HHHHHHhc
Q psy10494 102 NIQEILNN 109 (203)
Q Consensus 102 ai~~ll~~ 109 (203)
+|.+++.+
T Consensus 991 AL~raL~~ 998 (1036)
T PLN02316 991 ALNRAISA 998 (1036)
T ss_pred HHHHHHhh
Confidence 99999865
No 135
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=82.32 E-value=9.2 Score=34.65 Aligned_cols=71 Identities=13% Similarity=0.050 Sum_probs=47.8
Q ss_pred cccCCHHHH---hcCCCccEEEec---CC-hhHHHHHHHcCCc----eeecccccchHHHHHHHHHcCceEEEccCCCCH
Q psy10494 28 FFFFLFVII---IAHPNIKLFITQ---GG-LQSLQEAVHFEVP----VIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHT 96 (203)
Q Consensus 28 ~~~~pq~~i---L~~~~~~~~Ith---gG-~~s~~Eal~~gvP----~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~ 96 (203)
.+++++.++ +.. +++|+.- -| ..++.||+++|+| +|+--..+-... ..-|..++.. +.
T Consensus 346 ~g~v~~~el~~~y~~--aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p~--d~ 414 (460)
T cd03788 346 YRSLPREELAALYRA--ADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNPY--DI 414 (460)
T ss_pred eCCCCHHHHHHHHHh--ccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECCC--CH
Confidence 467787764 555 8888853 34 4677999999999 554433221111 2346677643 78
Q ss_pred HHHHHHHHHHHhc
Q psy10494 97 ETLFENIQEILNN 109 (203)
Q Consensus 97 ~~l~~ai~~ll~~ 109 (203)
+++.++|.+++++
T Consensus 415 ~~la~ai~~~l~~ 427 (460)
T cd03788 415 DEVADAIHRALTM 427 (460)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999986
No 136
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=81.71 E-value=7.4 Score=34.52 Aligned_cols=90 Identities=18% Similarity=0.141 Sum_probs=57.3
Q ss_pred CHHHHhcCCCccEEEecCChhHHHHHHHcCCceeec-ccccchHHHHHHHHHcC-ceE--E---------EccCCCCHHH
Q psy10494 32 LFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI-PFFGDQNYNVKIIRRLG-IGS--Y---------MEFEDIHTET 98 (203)
Q Consensus 32 pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i-P~~~DQ~~na~~~~~~G-~G~--~---------l~~~~~~~~~ 98 (203)
...+++.. +++.+.-.|. .+.|+...|+|++++ -...=...-++++.+.. +|+ . +-.++.+++.
T Consensus 253 ~~~~~m~~--ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~ 329 (373)
T PF02684_consen 253 ESYDAMAA--ADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPEN 329 (373)
T ss_pred chHHHHHh--CcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHH
Confidence 44567777 8888877765 468999999999987 22222344555554422 111 1 1125779999
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhh
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDISK 125 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~~~ 125 (203)
+.+++.+++.| ++.++......+.++
T Consensus 330 i~~~~~~ll~~-~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 330 IAAELLELLEN-PEKRKKQKELFREIR 355 (373)
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHHH
Confidence 99999999998 655544444444443
No 137
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=80.95 E-value=4 Score=34.89 Aligned_cols=53 Identities=25% Similarity=0.332 Sum_probs=39.2
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+-||=||+.+++.. ++|++++. .|..=-..+.+.+++.+++.+++++
T Consensus 63 ~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn----------------~G~lGFL~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGIN----------------HGRLGFITDIPLDDMQETLPPMLAG 119 (291)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEc----------------CCCccccccCCHHHHHHHHHHHHcC
Confidence 48999999999999999774 67888874 2221112256778888888888865
No 138
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=80.76 E-value=11 Score=35.69 Aligned_cols=88 Identities=16% Similarity=0.190 Sum_probs=54.4
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeecc-cccchHHHHHHHHHc------------CceEEEc----cCCCCH
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIP-FFGDQNYNVKIIRRL------------GIGSYME----FEDIHT 96 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP-~~~DQ~~na~~~~~~------------G~G~~l~----~~~~~~ 96 (203)
.++++. +++.+.-.|.- +.|+...|+|++++= ...=-..-++++.+. |=.++.+ .++.++
T Consensus 483 ~~~m~a--aD~aLaaSGTa-TLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tp 559 (608)
T PRK01021 483 YELMRE--CDCALAKCGTI-VLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQP 559 (608)
T ss_pred HHHHHh--cCeeeecCCHH-HHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCH
Confidence 467777 89999888864 679999999999872 111122334555441 1111111 246789
Q ss_pred HHHHHHHHHHHhchHHHH----HHHHHHHHHhhc
Q psy10494 97 ETLFENIQEILNNYDRYK----KAVKRASDISKT 126 (203)
Q Consensus 97 ~~l~~ai~~ll~~~~~y~----~~a~~~s~~~~~ 126 (203)
+++.+++ +++.| ++++ +..+++.+.+.+
T Consensus 560 e~La~~l-~lL~d-~~~r~~~~~~l~~lr~~Lg~ 591 (608)
T PRK01021 560 EEVAAAL-DILKT-SQSKEKQKDACRDLYQAMNE 591 (608)
T ss_pred HHHHHHH-HHhcC-HHHHHHHHHHHHHHHHHhcC
Confidence 9999997 88877 5444 444444444443
No 139
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=79.94 E-value=5.1 Score=34.56 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=43.8
Q ss_pred cccCCHHHHhcCCCccEEEecCC-hhHHHHHHHcCCceeecccccchHH----HHHHHHHcCceEEEc
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGG-LQSLQEAVHFEVPVIGIPFFGDQNY----NVKIIRRLGIGSYME 90 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG-~~s~~Eal~~gvP~i~iP~~~DQ~~----na~~~~~~G~G~~l~ 90 (203)
.+.-|..+.|+. ++.++.-+. .+.++||+..|+|+.++|... +.. -...+++.|.-..++
T Consensus 217 ~~~nPy~~~La~--ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~ 281 (311)
T PF06258_consen 217 TGENPYLGFLAA--ADAIVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFT 281 (311)
T ss_pred CCCCcHHHHHHh--CCEEEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECC
Confidence 444577788988 777665555 799999999999999998876 222 234556678777666
No 140
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.68 E-value=4.1 Score=35.12 Aligned_cols=53 Identities=23% Similarity=0.318 Sum_probs=40.2
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++.. ++|++++-. |..=-..+.+.+++.+++++++++
T Consensus 68 ~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~----------------G~lGFLt~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT----------------GHLGFLTEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC----------------CCCcccccCCHHHHHHHHHHHHcC
Confidence 48999999999999999775 789998842 322122345778889999998876
No 141
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.32 E-value=5.1 Score=34.20 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=38.9
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+-||=||+..++. .++|++++-. |..=-..+++.+++.+++++++++
T Consensus 64 ~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~----------------G~lGFLt~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 64 ISDFLISLGGDGTLISLCRKAAEYDKFVLGIHA----------------GHLGFLTDITVDEAEKFFQAFFQG 120 (287)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC----------------CCcccCCcCCHHHHHHHHHHHHcC
Confidence 4899999999999998866 3778888842 322222356778888888888865
No 142
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.84 E-value=5.2 Score=34.24 Aligned_cols=53 Identities=25% Similarity=0.492 Sum_probs=40.2
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++.. ++|++++-. |..=-..+.+++++.+++++++++
T Consensus 64 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~----------------G~lGFLt~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 64 SADMVISIGGDGTFLRTATYVGNSNIPILGINT----------------GRLGFLATVSKEEIEETIDELLNG 120 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEec----------------CCCCcccccCHHHHHHHHHHHHcC
Confidence 48999999999999998873 789888843 221122356778899999999876
No 143
>KOG4626|consensus
Probab=77.75 E-value=7.5 Score=37.00 Aligned_cols=71 Identities=14% Similarity=0.250 Sum_probs=47.1
Q ss_pred cEEEecCChhHHHHHHHcCCceeecccccchHH-HHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHH
Q psy10494 43 KLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNY-NVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVK 118 (203)
Q Consensus 43 ~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~-na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~ 118 (203)
+-+.+. |..|.+|.++.||||+.+|.-.-... -+..+...|+|-.+-+ +.++-.+.--++-.| ..|-++.+
T Consensus 841 DTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd-~~~L~~lr 912 (966)
T KOG4626|consen 841 DTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---NREEYVQIAVRLATD-KEYLKKLR 912 (966)
T ss_pred cCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---hHHHHHHHHHHhhcC-HHHHHHHH
Confidence 334554 67889999999999999997543333 3455677899986653 555555555566666 55554443
No 144
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.17 E-value=5.1 Score=33.97 Aligned_cols=52 Identities=25% Similarity=0.474 Sum_probs=37.7
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHh
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILN 108 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~ 108 (203)
.++++|+=||=||+..++. .++|++++-.. .+|-.. +.+++++.+.+.++++
T Consensus 42 ~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGFL~---~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 42 RAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGFLT---DIDPKNAYEQLEACLE 97 (272)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcccc---cCCHHHHHHHHHHHHh
Confidence 3899999999999998765 36798888431 133322 4567788888888887
No 145
>PRK14099 glycogen synthase; Provisional
Probab=76.79 E-value=14 Score=33.70 Aligned_cols=76 Identities=8% Similarity=0.059 Sum_probs=46.7
Q ss_pred CccEEEec----CChhHHHHHHHcCCceeeccccc--chHHHHHH-HHH--cCceEEEccCCCCHHHHHHHHHH---HHh
Q psy10494 41 NIKLFITQ----GGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKI-IRR--LGIGSYMEFEDIHTETLFENIQE---ILN 108 (203)
Q Consensus 41 ~~~~~Ith----gG~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~-~~~--~G~G~~l~~~~~~~~~l~~ai~~---ll~ 108 (203)
.+++|+.. |-..+.+||+++|+|.|+-...+ |...+... .+. .+.|..++.. +++++.+++.+ +++
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~~--d~~~La~ai~~a~~l~~ 446 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSPV--TADALAAALRKTAALFA 446 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCCC--CHHHHHHHHHHHHHHhc
Confidence 48888863 22568899999998766654322 32211110 111 1578888754 78999999997 566
Q ss_pred chHHHHHHHHH
Q psy10494 109 NYDRYKKAVKR 119 (203)
Q Consensus 109 ~~~~y~~~a~~ 119 (203)
| +..++++.+
T Consensus 447 d-~~~~~~l~~ 456 (485)
T PRK14099 447 D-PVAWRRLQR 456 (485)
T ss_pred C-HHHHHHHHH
Confidence 6 655554444
No 146
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.55 E-value=5.9 Score=33.97 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=40.3
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..+.. .++|++++-.. .+|... +++.+++.+++++++++
T Consensus 68 ~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 68 YCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-------------HLGFLT---QIPREYMTDKLLPVLEG 124 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-------------CCeEee---ccCHHHHHHHHHHHHcC
Confidence 4899999999999999875 37899988431 144333 45778899999999866
No 147
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.13 E-value=6.5 Score=33.91 Aligned_cols=53 Identities=23% Similarity=0.468 Sum_probs=40.5
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++.. ++|++++... .+|... +...+++.+++.+++++
T Consensus 72 ~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 72 GCELVLVLGGDGTILRAAELARAADVPVLGVNLG-------------HVGFLA---EAEAEDLDEAVERVVDR 128 (306)
T ss_pred CCCEEEEEcCCHHHHHHHHHhccCCCcEEEEecC-------------CCceec---cCCHHHHHHHHHHHHcC
Confidence 48999999999999998764 7899998541 133333 45678899999999876
No 148
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=74.69 E-value=4.7 Score=33.56 Aligned_cols=37 Identities=16% Similarity=-0.012 Sum_probs=32.3
Q ss_pred cccCCHHHHhcCCCccEEEecCChhHHHHHHHcCCceeec
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI 67 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i 67 (203)
.+-.+-.++|.+ ++.+||-.+. .-.||+.+|+|++++
T Consensus 188 ~~~~~~~~Ll~~--s~~VvtinSt-vGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 188 DDDVNLYELLEQ--SDAVVTINST-VGLEALLHGKPVIVF 224 (269)
T ss_pred CCCCCHHHHHHh--CCEEEEECCH-HHHHHHHcCCceEEe
Confidence 666788899999 9999998754 678999999999997
No 149
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.82 E-value=8.1 Score=32.59 Aligned_cols=54 Identities=28% Similarity=0.391 Sum_probs=39.5
Q ss_pred CccEEEecCChhHHHHHHHc-----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF-----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~-----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++.. .+|++++...+ .+|.. .+.+.+++.+++.+++++
T Consensus 39 ~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred CccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcC
Confidence 48999999999999999874 56777774311 23322 356778888888888865
No 150
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.58 E-value=7.6 Score=32.89 Aligned_cols=53 Identities=23% Similarity=0.453 Sum_probs=39.6
Q ss_pred CccEEEecCChhHHHHHHHc-CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF-EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~-gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++.. ..|++++-.. .+|-. .+.+.+++.+++++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFL---TEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccC---cccCHHHHHHHHHHHHcC
Confidence 48999999999999999873 5688777320 12322 356788999999999876
No 151
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=73.58 E-value=13 Score=36.37 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=54.4
Q ss_pred cCCHHH---HhcCCCccEEEecC---Ch-hHHHHHHHcCCc---eeecc-cccchHHHHHHHHHcC-ceEEEccCCCCHH
Q psy10494 30 FFLFVI---IIAHPNIKLFITQG---GL-QSLQEAVHFEVP---VIGIP-FFGDQNYNVKIIRRLG-IGSYMEFEDIHTE 97 (203)
Q Consensus 30 ~~pq~~---iL~~~~~~~~Ithg---G~-~s~~Eal~~gvP---~i~iP-~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~ 97 (203)
++|..+ ++.. +++|+.-. |+ .+..|++++|+| +++++ +.+-- .. .| .|+.+++. +.+
T Consensus 363 ~v~~~el~aly~~--ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~----~~---l~~~allVnP~--D~~ 431 (797)
T PLN03063 363 SVDFNYLCALYAI--TDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAG----QS---LGAGALLVNPW--NIT 431 (797)
T ss_pred CCCHHHHHHHHHh--CCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCch----hh---hcCCeEEECCC--CHH
Confidence 445544 4555 88988654 66 566899999999 33333 33211 11 23 57788754 788
Q ss_pred HHHHHHHHHHh-chHHHHHHHHHHHHHhhc
Q psy10494 98 TLFENIQEILN-NYDRYKKAVKRASDISKT 126 (203)
Q Consensus 98 ~l~~ai~~ll~-~~~~y~~~a~~~s~~~~~ 126 (203)
++.++|.++++ +..+.+++.+++.+....
T Consensus 432 ~lA~AI~~aL~m~~~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 432 EVSSAIKEALNMSDEERETRHRHNFQYVKT 461 (797)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 99999999998 413344455555555555
No 152
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.69 E-value=9.6 Score=31.91 Aligned_cols=54 Identities=19% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCccEEEecCChhHHHHHHH-cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 40 PNIKLFITQGGLQSLQEAVH-FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 40 ~~~~~~IthgG~~s~~Eal~-~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
..++++|+=||=||+..++. .++|++++-... +|.. .+.+.+++.++++++++.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~G~-------------lGfl---~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKAGR-------------LGFL---SSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeCCC-------------Cccc---cccCHHHHHHHHHHHHcC
Confidence 35899999999999999876 578888774211 3322 245678888888888765
No 153
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.56 E-value=7.5 Score=33.27 Aligned_cols=53 Identities=23% Similarity=0.451 Sum_probs=39.4
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+..++. .++|++++-... +|.. .+++++++.+++++++++
T Consensus 63 ~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G~-------------lGFl---~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 63 QADLAIVVGGDGNMLGAARVLARYDIKVIGINRGN-------------LGFL---TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECCC-------------CCcc---cccCHHHHHHHHHHHHcC
Confidence 4899999999999999975 367888874311 2322 245678899999999865
No 154
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=71.79 E-value=9.2 Score=35.66 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=62.5
Q ss_pred cccccccccccccccccccCCHHH---HhcCCCccEEEecCC---hhHHHHHHHcCCceeec----cc-------cc---
Q psy10494 12 GLINLKRNFTKFFFFFFFFFLFVI---IIAHPNIKLFITQGG---LQSLQEAVHFEVPVIGI----PF-------FG--- 71 (203)
Q Consensus 12 ~~~~lp~n~~~~~~~~~~~~pq~~---iL~~~~~~~~IthgG---~~s~~Eal~~gvP~i~i----P~-------~~--- 71 (203)
...++|+-+.+ .+-+|+.+ +|.. +++||--|. .-+-.||+++|+|.|-- |. +.
T Consensus 316 ~~~~~P~~V~N-----HG~l~~~ef~~lL~~--akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KP 388 (559)
T PF15024_consen 316 RPPNVPSFVKN-----HGILSGDEFQQLLRK--AKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKP 388 (559)
T ss_pred CCcccchhhhh-----cCcCCHHHHHHHHHh--hhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCC
Confidence 34568888999 99999975 6777 999998887 57889999999988743 21 11
Q ss_pred ------chHHHHHHHHH-cCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 72 ------DQNYNVKIIRR-LGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 72 ------DQ~~na~~~~~-~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.|.. +++. .|-=-+...+--+.+++.+||++++++
T Consensus 389 t~r~~~SQhP---Y~e~~iG~PhVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 389 TLREWTSQHP---YAEEFIGEPHVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred CcceeccCCh---HHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhc
Confidence 2333 2332 443334444455789999999999987
No 155
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.70 E-value=6.9 Score=33.20 Aligned_cols=53 Identities=21% Similarity=0.481 Sum_probs=37.7
Q ss_pred CccEEEecCChhHHHHHHH---cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH---FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~---~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+-||=||+.+++. .++|++++|... .|-. .+++++++.+++.+++++
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-------------lGFl---~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMGT-------------LGFL---TEVEPEETFFALSRLLEG 112 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-------------CCcc---ccCCHHHHHHHHHHHHcC
Confidence 5899999999999999884 356888887521 1111 234567788888888765
No 156
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=71.39 E-value=60 Score=30.69 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHhcCCCccEEEe----cCChhHHHHHHHcCCceeeccccc-chHHHHHHHHHc-CceEEEccCC-----CCHHHHHH
Q psy10494 33 FVIIIAHPNIKLFIT----QGGLQSLQEAVHFEVPVIGIPFFG-DQNYNVKIIRRL-GIGSYMEFED-----IHTETLFE 101 (203)
Q Consensus 33 q~~iL~~~~~~~~It----hgG~~s~~Eal~~gvP~i~iP~~~-DQ~~na~~~~~~-G~G~~l~~~~-----~~~~~l~~ 101 (203)
..+++.. |++|+. -|=..++.||+++|+|+|.....+ ..... ..+... ..|+.+...+ -+.+++.+
T Consensus 468 y~E~~~g--~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRG--CHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhh--ceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 4556655 888877 333678999999999999986532 11111 111111 2566554211 13466777
Q ss_pred HHHHHHhc
Q psy10494 102 NIQEILNN 109 (203)
Q Consensus 102 ai~~ll~~ 109 (203)
++.++++.
T Consensus 545 ~m~~~~~~ 552 (590)
T cd03793 545 YMYEFCQL 552 (590)
T ss_pred HHHHHhCC
Confidence 77777743
No 157
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=71.10 E-value=9.4 Score=36.71 Aligned_cols=94 Identities=11% Similarity=0.090 Sum_probs=55.6
Q ss_pred cccCCHHHHhcC-CCccEEEecC---C-hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 28 FFFFLFVIIIAH-PNIKLFITQG---G-LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 28 ~~~~pq~~iL~~-~~~~~~Ithg---G-~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
.+++|+.++.+. ..+++|+... | ...+.|++++|+|-.+.|+..+--.-+. +..-|+.+++. +.+++.++
T Consensus 347 ~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~l~~~llv~P~--d~~~la~a 421 (726)
T PRK14501 347 YRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---ELAEALLVNPN--DIEGIAAA 421 (726)
T ss_pred eCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhH---HhCcCeEECCC--CHHHHHHH
Confidence 567888765433 4488888753 4 4677999999776322222211111111 11237777754 68999999
Q ss_pred HHHHHhc-hHHHHHHHHHHHHHhhc
Q psy10494 103 IQEILNN-YDRYKKAVKRASDISKT 126 (203)
Q Consensus 103 i~~ll~~-~~~y~~~a~~~s~~~~~ 126 (203)
|.+++++ .++.+++..++.+....
T Consensus 422 i~~~l~~~~~e~~~r~~~~~~~v~~ 446 (726)
T PRK14501 422 IKRALEMPEEEQRERMQAMQERLRR 446 (726)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 9999975 13455555555555543
No 158
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=68.36 E-value=12 Score=34.61 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=39.5
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||++.++.. ++|++++.. -.+|-. .+++.+++.+++.+++++
T Consensus 262 ~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~-------------G~LGFL---t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 262 KVDLVITLGGDGTVLWAASMFKGPVPPVVPFSM-------------GSLGFM---TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred CCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC-------------CCccee---cccCHHHHHHHHHHHHcC
Confidence 58999999999999999774 567777731 013332 356788899999999876
No 159
>KOG0853|consensus
Probab=68.18 E-value=3.6 Score=37.77 Aligned_cols=74 Identities=11% Similarity=0.083 Sum_probs=50.8
Q ss_pred cEEEecCC---hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHH
Q psy10494 43 KLFITQGG---LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKR 119 (203)
Q Consensus 43 ~~~IthgG---~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~ 119 (203)
.+|++-.+ ..++.||+++|.|+++.--.| =++-++..-.|..++++.-....+.+++.++..| ++++.++.+
T Consensus 368 ~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~-p~l~~~~~~ 442 (495)
T KOG0853|consen 368 GVLYQPANEHFGIVPIEAMACGLPVVATNNGG----PAEIVVHGVTGLLIDPGQEAVAELADALLKLRRD-PELWARMGK 442 (495)
T ss_pred eEEecCCCCCccceeHHHHhcCCCEEEecCCC----ceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcC-HHHHHHHHH
Confidence 34666666 568899999999999883322 0122333446777776333334799999999999 998887765
Q ss_pred HH
Q psy10494 120 AS 121 (203)
Q Consensus 120 ~s 121 (203)
-.
T Consensus 443 ~G 444 (495)
T KOG0853|consen 443 NG 444 (495)
T ss_pred HH
Confidence 43
No 160
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=67.03 E-value=11 Score=35.27 Aligned_cols=53 Identities=26% Similarity=0.501 Sum_probs=40.1
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+-||=||+..+... ++|++++-... +|- ..+.+.+++.+++++++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF---L~~~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF---LTEFSKEEIFKAIDSIISG 404 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc---CcccCHHHHHHHHHHHHcC
Confidence 47999999999999999774 77988884311 222 2356778899999999865
No 161
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.70 E-value=14 Score=31.72 Aligned_cols=53 Identities=34% Similarity=0.445 Sum_probs=40.2
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+=||=||+.+++. .++|++++... .+|. ..+.+.+++.+++.+++++
T Consensus 62 ~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-------------~lGF---l~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDLVIVVGGDGSLLGAARALARHNVPVLGINRG-------------RLGF---LTDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-------------cccc---cccCCHHHHHHHHHHHHcC
Confidence 4889999999999999875 36788888641 1332 2356788999999999865
No 162
>PLN02929 NADH kinase
Probab=66.25 E-value=15 Score=31.73 Aligned_cols=65 Identities=20% Similarity=0.303 Sum_probs=45.0
Q ss_pred CccEEEecCChhHHHHHHH---cCCceeeccccc------chHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVH---FEVPVIGIPFFG------DQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~---~gvP~i~iP~~~------DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.++++|+-||=||+..+.. .++|++++-... .++.|.- -+.+..|.... .+.+++.+++.+++++
T Consensus 64 ~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~-~~~r~lGfL~~---~~~~~~~~~L~~il~g 137 (301)
T PLN02929 64 DVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEF-DARRSTGHLCA---ATAEDFEQVLDDVLFG 137 (301)
T ss_pred CCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCccccccccccccc-ccccCcccccc---CCHHHHHHHHHHHHcC
Confidence 4899999999999998855 468999985431 2233321 12234665443 4678999999999976
No 163
>PF15050 SCIMP: SCIMP protein
Probab=62.99 E-value=22 Score=26.45 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Q psy10494 159 LTWYEYFGLDVYLVIFSPVILALYGL-YRLVLTINRR 194 (203)
Q Consensus 159 ~~~~q~~~lDv~~~~~~~~~~~~~~~-~~~~~~~~~~ 194 (203)
|+||.-+..=++++.++++.+.+-++ |.++|...|+
T Consensus 1 M~WWr~nFWiiLAVaII~vS~~lglIlyCvcR~~lRq 37 (133)
T PF15050_consen 1 MSWWRDNFWIILAVAIILVSVVLGLILYCVCRWQLRQ 37 (133)
T ss_pred CchHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57777777666666555444444333 3445555554
No 164
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=62.24 E-value=21 Score=33.78 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCHHHHhcCCCccEEEecC--ChhHHHHHHHcCCceeeccccc-chHHHHH--HHHHcCceEEEccCCCCHHHHHHHHHH
Q psy10494 31 FLFVIIIAHPNIKLFITQG--GLQSLQEAVHFEVPVIGIPFFG-DQNYNVK--IIRRLGIGSYMEFEDIHTETLFENIQE 105 (203)
Q Consensus 31 ~pq~~iL~~~~~~~~Ithg--G~~s~~Eal~~gvP~i~iP~~~-DQ~~na~--~~~~~G~G~~l~~~~~~~~~l~~ai~~ 105 (203)
+|..+++.-....+|-|.= =.-|-.|++.+|+|.|.--+-+ -++.+-. .-...|+-+ ++..+.+.++..+.+.+
T Consensus 461 l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~V-vdR~~~n~~e~v~~la~ 539 (633)
T PF05693_consen 461 LDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYV-VDRRDKNYDESVNQLAD 539 (633)
T ss_dssp S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEE-E-SSSS-HHHHHHHHHH
T ss_pred CCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEE-EeCCCCCHHHHHHHHHH
Confidence 4566766663344444411 1358899999999999886633 2222211 113355554 44456677777777777
Q ss_pred HHhc--------hHHHHHHHHHHHHH
Q psy10494 106 ILNN--------YDRYKKAVKRASDI 123 (203)
Q Consensus 106 ll~~--------~~~y~~~a~~~s~~ 123 (203)
.+.+ +...|+++.++|+.
T Consensus 540 ~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 540 FLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6644 24577777777775
No 165
>smart00096 UTG Uteroglobin.
Probab=61.76 E-value=36 Score=22.72 Aligned_cols=50 Identities=8% Similarity=0.106 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHh
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKA 145 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~ 145 (203)
|+++....+..--.| +...+++.++++....-+....+.+...++.+...
T Consensus 17 t~~~Y~~~l~~y~~~-~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI~~s 66 (69)
T smart00096 17 TPSSYEASLKQFKPD-PDMLEAGRQLKKLVDTLPQETRENILKLTEKIYTS 66 (69)
T ss_pred CHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 677888888888888 99999999999998886666677788888877654
No 166
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=59.35 E-value=48 Score=31.26 Aligned_cols=61 Identities=20% Similarity=0.111 Sum_probs=40.4
Q ss_pred cccCCHHH-HhcCCCccEEEe---cCChhHHHHHHHcCCceeecccccchHH--HHHH-HHHcCceEEEc
Q psy10494 28 FFFFLFVI-IIAHPNIKLFIT---QGGLQSLQEAVHFEVPVIGIPFFGDQNY--NVKI-IRRLGIGSYME 90 (203)
Q Consensus 28 ~~~~pq~~-iL~~~~~~~~It---hgG~~s~~Eal~~gvP~i~iP~~~DQ~~--na~~-~~~~G~G~~l~ 90 (203)
.+=.|..+ .-.+.-+|+|.. .||..|..|++..|+|++..+ |+|+. |+.- +...|+-..+-
T Consensus 494 ~p~~~~~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA 561 (620)
T COG3914 494 LPPAPNEDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVA 561 (620)
T ss_pred cCCCCCHHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhc
Confidence 44444432 333455788876 599999999999999999886 77775 3333 34466554443
No 167
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=59.29 E-value=80 Score=29.12 Aligned_cols=103 Identities=15% Similarity=0.093 Sum_probs=65.7
Q ss_pred ccccCCHHHHhcC-CCccEEEec---CChhHH-HHHHHcCC----ceeecccccchHHHHHHHHHcCceEEEccCCCCHH
Q psy10494 27 FFFFFLFVIIIAH-PNIKLFITQ---GGLQSL-QEAVHFEV----PVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTE 97 (203)
Q Consensus 27 ~~~~~pq~~iL~~-~~~~~~Ith---gG~~s~-~Eal~~gv----P~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~ 97 (203)
+.+.+|..++.+. ..+++++.- -|+|.+ .|.++++. |+|.--+.+= .+...-|+.+++ .+.+
T Consensus 366 ~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGa-------a~~l~~AllVNP--~d~~ 436 (487)
T TIGR02398 366 FTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGA-------AVELKGALLTNP--YDPV 436 (487)
T ss_pred EcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccc-------hhhcCCCEEECC--CCHH
Confidence 3678888875542 447887764 488755 59999987 5555443321 144445777775 4789
Q ss_pred HHHHHHHHHHhc-hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 98 TLFENIQEILNN-YDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 98 ~l~~ai~~ll~~-~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
++.++|.+.|+. ..+-+++.+++.+..... .+.+|.+..+.
T Consensus 437 ~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~~------d~~~W~~~fl~ 478 (487)
T TIGR02398 437 RMDETIYVALAMPKAEQQARMREMFDAVNYY------DVQRWADEFLA 478 (487)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhC------CHHHHHHHHHH
Confidence 999999999987 123445555555555442 35667776554
No 168
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=58.99 E-value=22 Score=29.65 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=24.2
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeeccc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPF 69 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~ 69 (203)
.++++|+-||=||+..++.. ++|++++-.
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 48999999999999988664 688888853
No 169
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=55.90 E-value=43 Score=29.83 Aligned_cols=98 Identities=19% Similarity=0.204 Sum_probs=63.2
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHcCCceeec----ccccchHHHHHHHHHcC--------ceEEEc----cCCCCHHH
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI----PFFGDQNYNVKIIRRLG--------IGSYME----FEDIHTET 98 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i----P~~~DQ~~na~~~~~~G--------~G~~l~----~~~~~~~~ 98 (203)
+++.. +|+.+.-+|.. +.|+..+|+||++. |+. ..-+++..+.. +|..+- .++.+++.
T Consensus 260 ~a~~~--aD~al~aSGT~-tLE~aL~g~P~Vv~Yk~~~it---~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~ 333 (381)
T COG0763 260 KAFAA--ADAALAASGTA-TLEAALAGTPMVVAYKVKPIT---YFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPEN 333 (381)
T ss_pred HHHHH--hhHHHHhccHH-HHHHHHhCCCEEEEEeccHHH---HHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHH
Confidence 34554 77777777654 57999999999987 331 22333333322 121111 24678999
Q ss_pred HHHHHHHHHhch---HHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 99 LFENIQEILNNY---DRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 99 l~~ai~~ll~~~---~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
+.+++.+++.|+ ..+++...++.+.++.. .+.+.+++.+-
T Consensus 334 la~~l~~ll~~~~~~~~~~~~~~~l~~~l~~~--~~~e~aA~~vl 376 (381)
T COG0763 334 LARALEELLLNGDRREALKEKFRELHQYLRED--PASEIAAQAVL 376 (381)
T ss_pred HHHHHHHHhcChHhHHHHHHHHHHHHHHHcCC--cHHHHHHHHHH
Confidence 999999999982 36777777777777774 36677776554
No 170
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=55.77 E-value=87 Score=28.72 Aligned_cols=86 Identities=15% Similarity=0.291 Sum_probs=58.6
Q ss_pred cccccccCC------------HHHHhc-CCCccEEEecCC--------------hhHHHHHHHcCCceeec-----cccc
Q psy10494 24 FFFFFFFFL------------FVIIIA-HPNIKLFITQGG--------------LQSLQEAVHFEVPVIGI-----PFFG 71 (203)
Q Consensus 24 ~~~~~~~~p------------q~~iL~-~~~~~~~IthgG--------------~~s~~Eal~~gvP~i~i-----P~~~ 71 (203)
|++-++|+. -..++. |.-+.++||-.| ...+.|.-..|+|.+++ |...
T Consensus 116 RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 116 RMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHP 195 (492)
T ss_pred ccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 355578853 245666 888888999555 23566667889999988 4433
Q ss_pred chHHHHHHH-HHcCce-EEEccCCCCHHHHHHHHHHHHhc
Q psy10494 72 DQNYNVKII-RRLGIG-SYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 72 DQ~~na~~~-~~~G~G-~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
+...-+..+ ++.++- +.++..+++.+++.+.++++|-.
T Consensus 196 et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 196 ETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred hhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 333333344 345765 56777789999999999999854
No 171
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=54.51 E-value=16 Score=25.62 Aligned_cols=24 Identities=13% Similarity=0.361 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 166 GLDVYLVIFSPVILALYGLYRLVL 189 (203)
Q Consensus 166 ~lDv~~~~~~~~~~~~~~~~~~~~ 189 (203)
+||+..+.+..+++.+.++|.+++
T Consensus 32 ~Lgm~~lvI~~iFil~VilwfvCC 55 (94)
T PF05393_consen 32 NLGMWFLVICGIFILLVILWFVCC 55 (94)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 667663333333333344444333
No 172
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=54.17 E-value=75 Score=22.44 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHhchHH--------HHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhCC
Q psy10494 93 DIHTETLFENIQEILNNYDR--------YKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADG 147 (203)
Q Consensus 93 ~~~~~~l~~ai~~ll~~~~~--------y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~~ 147 (203)
+.+.+++.+.+++++..+++ +..+.+..++...+ --.+..-.|.+|+.|+++
T Consensus 11 ~~e~s~LIEqiE~~i~P~~S~F~CFa~~~~~~~~~a~~kv~~---W~~~k~k~~~~FV~RNk~ 70 (100)
T PF06363_consen 11 NIEMSELIEQIEAFIEPRPSVFKCFASKVPTKIKTACDKVKS---WVKNKMKSMLSFVERNKA 70 (100)
T ss_pred hhhHHHHHHHHHHHHCCCCChHHHHHhcccchhHHHHHHHHH---HHHHHHHHHHHHHHHcch
Confidence 34667888888888865321 22222222222222 122344567888888877
No 173
>PLN02727 NAD kinase
Probab=53.64 E-value=28 Score=34.64 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=40.5
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
+++++|+=||=||++.++.. ++|++++-. |..=-..+++.+++.++|.+++++
T Consensus 743 ~~DLVIvLGGDGTlLrAar~~~~~~iPILGINl----------------GrLGFLTdi~~ee~~~~L~~Il~G 799 (986)
T PLN02727 743 RVDFVACLGGDGVILHASNLFRGAVPPVVSFNL----------------GSLGFLTSHYFEDFRQDLRQVIHG 799 (986)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeC----------------CCccccccCCHHHHHHHHHHHHcC
Confidence 58999999999999999774 678888743 322222356788899999999976
No 174
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=53.05 E-value=61 Score=21.03 Aligned_cols=49 Identities=10% Similarity=0.135 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLK 144 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~ 144 (203)
+.+.+...+..--.+ +..++++.++++-+...+......+...++.+..
T Consensus 15 s~~~y~~~L~~f~~~-~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~I~~ 63 (67)
T cd00633 15 SEEEYKAELEKFNAT-PEAVEAKEKLKQCVDEQSLETKENIAKLLEKILA 63 (67)
T ss_pred CHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHc
Confidence 778888888888888 9999999999999999877777777777777654
No 175
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=52.70 E-value=32 Score=19.52 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10494 164 YFGLDVYLVIFSPVILALY 182 (203)
Q Consensus 164 ~~~lDv~~~~~~~~~~~~~ 182 (203)
.|-||.++++-++++.++|
T Consensus 5 CYiLDgiL~iYgiiiT~L~ 23 (33)
T PF11628_consen 5 CYILDGILFIYGIIITALY 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHH
Confidence 5788998887777766654
No 176
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=52.53 E-value=21 Score=27.54 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=27.7
Q ss_pred ccc-CCHHHHhcCCCccEEEecCChhHHH---HHHHcCCceeeccc
Q psy10494 28 FFF-FLFVIIIAHPNIKLFITQGGLQSLQ---EAVHFEVPVIGIPF 69 (203)
Q Consensus 28 ~~~-~pq~~iL~~~~~~~~IthgG~~s~~---Eal~~gvP~i~iP~ 69 (203)
.++ .++..++....-.+++--||.||+. |++.+++|++.+|.
T Consensus 78 ~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 78 TGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 344 5666666553334455567777764 56889999999975
No 177
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=49.42 E-value=16 Score=31.48 Aligned_cols=18 Identities=11% Similarity=0.349 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy10494 177 VILALYGLYRLVLTINRR 194 (203)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (203)
+++++.++|.++|+-.++
T Consensus 268 IVLIMvIIYLILRYRRKK 285 (299)
T PF02009_consen 268 IVLIMVIIYLILRYRRKK 285 (299)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334455677777755433
No 178
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.14 E-value=22 Score=30.37 Aligned_cols=61 Identities=16% Similarity=0.174 Sum_probs=42.2
Q ss_pred cccCCHHHHhcCCCccEEEecCC-hhHHHHHHHcCCceeec--cccc-chHH-HHHHHHHcCceEEEc
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGG-LQSLQEAVHFEVPVIGI--PFFG-DQNY-NVKIIRRLGIGSYME 90 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG-~~s~~Eal~~gvP~i~i--P~~~-DQ~~-na~~~~~~G~G~~l~ 90 (203)
.++-|.-+.|+. +|.+|+-.. .+..+||...|+|+.++ |.++ +-+. --+.+++.++++..+
T Consensus 233 ~g~NPY~~~La~--Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~ 298 (329)
T COG3660 233 TGYNPYIDMLAA--ADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFE 298 (329)
T ss_pred CCCCchHHHHhh--cceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccC
Confidence 367799999998 999888776 58889999999999876 3332 2211 223344566665554
No 179
>PRK13718 conjugal transfer protein TrbE; Provisional
Probab=48.75 E-value=40 Score=23.12 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhhccCCccCCC
Q psy10494 179 LALYGLYRLVLTINRRWSNGKLKSE 203 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~k~k~~ 203 (203)
++++++|.++..+.+.....+.||+
T Consensus 55 v~~~~ly~ffs~Ltkl~~~d~~ks~ 79 (84)
T PRK13718 55 VLLFILYFFFSALTKLQKHDERKSD 79 (84)
T ss_pred HHHHHHHHHHHHHHHHHhcccccch
Confidence 4455566666666665655555553
No 180
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=47.98 E-value=29 Score=26.55 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10494 173 IFSPVILALYGLYRLVLTIN 192 (203)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (203)
++++++++.+++|.++|.++
T Consensus 125 i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444445556677777765
No 181
>PRK06270 homoserine dehydrogenase; Provisional
Probab=46.15 E-value=82 Score=27.37 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=41.2
Q ss_pred CHHHHhcCCCccEEEe------cCC---hhHHHHHHHcCCceee---cccccchHHHHHHHHHcCceEEEc
Q psy10494 32 LFVIIIAHPNIKLFIT------QGG---LQSLQEAVHFEVPVIG---IPFFGDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 32 pq~~iL~~~~~~~~It------hgG---~~s~~Eal~~gvP~i~---iP~~~DQ~~na~~~~~~G~G~~l~ 90 (203)
.-.++|.++..+++|- |+| ..-+.+++.+|+++++ -|+...-..-.+.+++.|.....+
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEe
Confidence 4467888888998887 443 4456899999999999 477544344445566677776654
No 182
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.67 E-value=1.1e+02 Score=24.10 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=38.5
Q ss_pred hHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc--hHHHHHHHHHHHHH
Q psy10494 73 QNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN--YDRYKKAVKRASDI 123 (203)
Q Consensus 73 Q~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~--~~~y~~~a~~~s~~ 123 (203)
+..|+.+.++.|+=-++-.+..+.++|.++..+=+.| ..++++...++-+.
T Consensus 110 ~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~e~E~~tAl~eI~rI 162 (176)
T COG3195 110 TELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDREQEFATALAEIERI 162 (176)
T ss_pred HHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 4579999999999988888888999999999888877 13444444444443
No 183
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=45.54 E-value=1.2e+02 Score=24.28 Aligned_cols=33 Identities=24% Similarity=0.165 Sum_probs=20.2
Q ss_pred HHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 75 YNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 75 ~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
.|.+++.+...-+ .....++++..+.+.|++.+
T Consensus 5 kN~~y~~~l~~~L--~~~~~~e~~~e~~L~eil~~ 37 (206)
T PF06570_consen 5 KNQEYIFDLRKYL--RSSGVSEEEIEELLEEILPH 37 (206)
T ss_pred HHHHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHH
Confidence 4556665554332 44566777777777777654
No 184
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=44.62 E-value=98 Score=28.92 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=28.1
Q ss_pred hcCCCccEEEecCChhHHHHHHHcCCceeeccccc
Q psy10494 37 IAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG 71 (203)
Q Consensus 37 L~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~ 71 (203)
+.+..++++|+.||-...... +..+|+|-+++.+
T Consensus 60 ~~~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 60 LATERCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred HhhCCCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 445679999999999888887 4679999998854
No 185
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.61 E-value=56 Score=27.51 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=24.4
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeeccc
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGIPF 69 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~iP~ 69 (203)
.++++|+=||=||+..++. .++|++++-.
T Consensus 33 ~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 33 GADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 3899999999999998875 5789998853
No 186
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=42.95 E-value=1.2e+02 Score=28.18 Aligned_cols=45 Identities=20% Similarity=0.283 Sum_probs=31.7
Q ss_pred hcCCCccEEEecCChhHHHHHHHcCCceeeccccc-chHHHHHHHHH
Q psy10494 37 IAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG-DQNYNVKIIRR 82 (203)
Q Consensus 37 L~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~-DQ~~na~~~~~ 82 (203)
+.+..++++|+.||-...... +..+|++-+++.+ |=..-...++.
T Consensus 50 ~~~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~~Dil~al~~a~~ 95 (526)
T TIGR02329 50 LGAERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTGFDVMQALARARR 95 (526)
T ss_pred HHhCCCcEEEECchHHHHHHH-hCCCCEEEecCChhhHHHHHHHHHh
Confidence 445579999999998888877 4579999998854 43333333333
No 187
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=41.90 E-value=35 Score=25.40 Aligned_cols=26 Identities=15% Similarity=0.079 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10494 169 VYLVIFSPVILALYGLYRLVLTINRRW 195 (203)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (203)
+.++++++++.++.++.. +.+++||.
T Consensus 66 i~~Ii~gv~aGvIg~Ill-i~y~irR~ 91 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILL-ISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred eeehhHHHHHHHHHHHHH-HHHHHHHH
Confidence 445555555555444443 33333443
No 188
>KOG3488|consensus
Probab=41.43 E-value=80 Score=21.19 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=7.1
Q ss_pred CccHHHHHHHH
Q psy10494 158 HLTWYEYFGLD 168 (203)
Q Consensus 158 ~~~~~q~~~lD 168 (203)
.++.++.|.||
T Consensus 35 s~hiihKyFLp 45 (81)
T KOG3488|consen 35 SMHIIHKYFLP 45 (81)
T ss_pred hhHHHHHHhcC
Confidence 45666666665
No 189
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=41.37 E-value=73 Score=18.58 Aligned_cols=7 Identities=43% Similarity=0.932 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy10494 168 DVYLVIF 174 (203)
Q Consensus 168 Dv~~~~~ 174 (203)
|.|++++
T Consensus 8 dfylc~l 14 (43)
T PF11395_consen 8 DFYLCFL 14 (43)
T ss_pred HHHHHHH
Confidence 4444333
No 190
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=40.33 E-value=1e+02 Score=27.35 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=56.6
Q ss_pred cccCCHH---HHhcCCCccEEEe----cCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFFLFV---IIIAHPNIKLFIT----QGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~~It----hgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+++|-. .+|+. |++.|- .=|+|+++-.+..|+|+.+- .+..--..+.+.|+-+....++++...+.
T Consensus 251 ~e~mpf~eYl~lL~~--cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~L~~~~v~ 324 (360)
T PF07429_consen 251 TEFMPFDEYLALLSR--CDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDELDEALVR 324 (360)
T ss_pred hhhCCHHHHHHHHHh--CCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEeccccCCHHHHH
Confidence 5677775 47777 666544 35799999999999999876 22333455677798888888899999999
Q ss_pred HHHHHHHh
Q psy10494 101 ENIQEILN 108 (203)
Q Consensus 101 ~ai~~ll~ 108 (203)
++=+++..
T Consensus 325 ea~rql~~ 332 (360)
T PF07429_consen 325 EAQRQLAN 332 (360)
T ss_pred HHHHHHhh
Confidence 88887764
No 191
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=39.64 E-value=67 Score=21.65 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy10494 133 DTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFGLDVYLVIFSPVILALYGLYRLVLTINR 193 (203)
Q Consensus 133 ~~a~~~ie~v~~~~~~~~~l~~~~~~~~~~q~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~ 193 (203)
+=+.+.++|+.+.+. .|+.+.. +++.=+++++.++.++..+-+-+
T Consensus 6 ~w~~~~v~~vAkdP~------------~Fl~~vl----l~LtPlfiisa~lSwkLaK~ie~ 50 (74)
T PF15086_consen 6 AWASYIVEWVAKDPY------------EFLTTVL----LILTPLFIISAVLSWKLAKAIEK 50 (74)
T ss_pred HHHHHHHHHHHcChH------------HHHHHHH----HHHhHHHHHHHHHHHHHHHHHHH
Confidence 334556777766654 3443322 22333344445556666665543
No 192
>PF15106 TMEM156: TMEM156 protein family
Probab=39.13 E-value=50 Score=27.01 Aligned_cols=38 Identities=26% Similarity=0.655 Sum_probs=20.4
Q ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCCccC
Q psy10494 157 WHLTWYEYFGLDVYLVIFSPVILALYGLYRLVLTIN--RRWSNGKLK 201 (203)
Q Consensus 157 ~~~~~~q~~~lDv~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~k~k 201 (203)
-+++||. ++++++++++++++++++.--. ++|.+.|.|
T Consensus 174 mKITWYv-------LVllVfiflii~iI~KIle~hrrvqkwq~hky~ 213 (226)
T PF15106_consen 174 MKITWYV-------LVLLVFIFLIILIIYKILEGHRRVQKWQSHKYK 213 (226)
T ss_pred hhhHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHhHHhhcCCC
Confidence 3667763 2333444455567777775332 455555544
No 193
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=37.23 E-value=52 Score=22.69 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10494 166 GLDVYLVIFSPVILALYGL 184 (203)
Q Consensus 166 ~lDv~~~~~~~~~~~~~~~ 184 (203)
.+++++++.+++++++.++
T Consensus 3 ~l~i~~iialiv~~iiaIv 21 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIV 21 (81)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3455555544444433333
No 194
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=36.68 E-value=1.9e+02 Score=26.58 Aligned_cols=74 Identities=16% Similarity=0.337 Sum_probs=56.5
Q ss_pred HhcCCCccEEEecCCh--------------hHHHHHHHcCCceeec-----ccccchHHHHHHH-HHcCceE-EEccCCC
Q psy10494 36 IIAHPNIKLFITQGGL--------------QSLQEAVHFEVPVIGI-----PFFGDQNYNVKII-RRLGIGS-YMEFEDI 94 (203)
Q Consensus 36 iL~~~~~~~~IthgG~--------------~s~~Eal~~gvP~i~i-----P~~~DQ~~na~~~-~~~G~G~-~l~~~~~ 94 (203)
|=.|+-..++||--|. .++.|.=..|+|.+++ |...+-..-+..+ ++.++-+ .++..++
T Consensus 141 I~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~s~et~~L~~eL~ekY~vpVlpvnc~~l 220 (492)
T PF09547_consen 141 ITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPYSEETQELAEELEEKYDVPVLPVNCEQL 220 (492)
T ss_pred eccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCCCHHHHHHHHHHHHHhCCcEEEeehHHc
Confidence 3457788899999884 3567778899999988 6666656666656 4488775 5666789
Q ss_pred CHHHHHHHHHHHHhc
Q psy10494 95 HTETLFENIQEILNN 109 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~ 109 (203)
+.+++...++++|-.
T Consensus 221 ~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 221 REEDITRILEEVLYE 235 (492)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999999854
No 195
>COG5547 Small integral membrane protein [Function unknown]
Probab=36.12 E-value=1.1e+02 Score=19.78 Aligned_cols=21 Identities=10% Similarity=0.175 Sum_probs=11.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy10494 159 LTWYEYFGLDVYLVIFSPVIL 179 (203)
Q Consensus 159 ~~~~q~~~lDv~~~~~~~~~~ 179 (203)
|.|++.+...++..++.+++.
T Consensus 1 meflk~fkypIIgglvglliA 21 (62)
T COG5547 1 MEFLKKFKYPIIGGLVGLLIA 21 (62)
T ss_pred CcHHHHhccchHHHHHHHHHH
Confidence 346666666666555443333
No 196
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=36.06 E-value=95 Score=23.96 Aligned_cols=10 Identities=0% Similarity=0.268 Sum_probs=5.4
Q ss_pred cHHHHHHHHH
Q psy10494 160 TWYEYFGLDV 169 (203)
Q Consensus 160 ~~~q~~~lDv 169 (203)
+|+..|.+-+
T Consensus 25 sffsthm~tI 34 (189)
T PF05568_consen 25 SFFSTHMYTI 34 (189)
T ss_pred cHHHHHHHHH
Confidence 5666555443
No 197
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=35.72 E-value=1.8e+02 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=22.9
Q ss_pred CccEEEecCC------hhHHHHHHHcCCceeeccc
Q psy10494 41 NIKLFITQGG------LQSLQEAVHFEVPVIGIPF 69 (203)
Q Consensus 41 ~~~~~IthgG------~~s~~Eal~~gvP~i~iP~ 69 (203)
+..++++|+| .+.+.+|...++|++.+.-
T Consensus 59 ~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 4667888855 5678899999999999953
No 198
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=35.34 E-value=40 Score=25.21 Aligned_cols=33 Identities=27% Similarity=0.559 Sum_probs=27.2
Q ss_pred HhcCCCccEEEecCChhHHHHHHHcCCceeeccc
Q psy10494 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPF 69 (203)
Q Consensus 36 iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~ 69 (203)
++.||+..++||-|..-. .-++.+|.|.|++|=
T Consensus 5 v~~~p~~pi~ItEG~kKA-~al~s~G~~aIalpG 37 (130)
T PF12965_consen 5 VLDDPNIPIWITEGAKKA-GALLSQGYPAIALPG 37 (130)
T ss_pred eecCCCccEEEEechHHH-HHHHcCCceEEEeCc
Confidence 578999999999998665 334678999999994
No 199
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=34.49 E-value=82 Score=22.45 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 169 VYLVIFSPVILALYGLYRLVLTIN 192 (203)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~ 192 (203)
+.+++++++++++++++++++.++
T Consensus 18 ~~~~~l~~~~~~l~ll~~ll~~~~ 41 (108)
T PF07219_consen 18 VALILLLLLFVVLYLLLRLLRRLL 41 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555556666666666554
No 200
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=34.01 E-value=3.5e+02 Score=24.26 Aligned_cols=77 Identities=23% Similarity=0.340 Sum_probs=55.7
Q ss_pred HHHhcCCCccEEEecCChhHHHHHHHcCCceeecccccchHHHHHHHHHcCce-EEEccCCCCHHHHHHHHHHHHhchHH
Q psy10494 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIG-SYMEFEDIHTETLFENIQEILNNYDR 112 (203)
Q Consensus 34 ~~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G-~~l~~~~~~~~~l~~ai~~ll~~~~~ 112 (203)
..++++ ++++|.- =+.++.=|+..|+|.+++-+ |+-+...+++.|+- ..++..+++.+.+..++.+.+.+.++
T Consensus 280 ~~~l~~--~dl~Vg~-R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~~ 353 (385)
T COG2327 280 GGILAA--CDLIVGM-RLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLDE 353 (385)
T ss_pred HHHhcc--CceEEee-hhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccHH
Confidence 346666 7777643 36788889999999999943 45555777887764 46667788999999999988876344
Q ss_pred HHHH
Q psy10494 113 YKKA 116 (203)
Q Consensus 113 y~~~ 116 (203)
.+++
T Consensus 354 ~~~~ 357 (385)
T COG2327 354 LRER 357 (385)
T ss_pred HHhh
Confidence 4444
No 201
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=33.74 E-value=31 Score=30.35 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy10494 179 LALYGLYRLVLTINRRWS 196 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (203)
++..++|.++|+-.++-.
T Consensus 324 LIMvIIYLILRYRRKKKM 341 (353)
T TIGR01477 324 LIMVIIYLILRYRRKKKM 341 (353)
T ss_pred HHHHHHHHHHHhhhcchh
Confidence 344566777766544333
No 202
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=33.55 E-value=65 Score=26.41 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10494 161 WYEYFGLDVYLVIFSPVILALYGLYRLVLTINRRWS 196 (203)
Q Consensus 161 ~~q~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (203)
=||+++-||-....+++++++.++-.+--.+.|+..
T Consensus 185 GY~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~ 220 (222)
T COG2011 185 GYQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLD 220 (222)
T ss_pred hHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378889999887777777777766666666666554
No 203
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=33.51 E-value=71 Score=19.11 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKR 119 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~ 119 (203)
+++++..||..+.++.-++++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4688999999998652345554444
No 204
>PF12669 P12: Virus attachment protein p12 family
Probab=33.46 E-value=50 Score=21.10 Aligned_cols=8 Identities=0% Similarity=-0.076 Sum_probs=3.8
Q ss_pred HHHHHhhc
Q psy10494 188 VLTINRRW 195 (203)
Q Consensus 188 ~~~~~~~~ 195 (203)
++.++|..
T Consensus 17 ~r~~~k~~ 24 (58)
T PF12669_consen 17 IRKFIKDK 24 (58)
T ss_pred HHHHHHHh
Confidence 35555443
No 205
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=33.38 E-value=49 Score=28.40 Aligned_cols=29 Identities=24% Similarity=0.466 Sum_probs=24.8
Q ss_pred CccEEEecCChhHHHHHHHc----CCceeeccc
Q psy10494 41 NIKLFITQGGLQSLQEAVHF----EVPVIGIPF 69 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~----gvP~i~iP~ 69 (203)
..+++|+-||=||+.+++.. ++|++++..
T Consensus 57 ~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 48999999999999999864 789888864
No 206
>PTZ00046 rifin; Provisional
Probab=32.60 E-value=37 Score=29.98 Aligned_cols=18 Identities=11% Similarity=0.145 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy10494 179 LALYGLYRLVLTINRRWS 196 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~ 196 (203)
++..++|.++|+-.++-.
T Consensus 329 LIMvIIYLILRYRRKKKM 346 (358)
T PTZ00046 329 LIMVIIYLILRYRRKKKM 346 (358)
T ss_pred HHHHHHHHHHHhhhcchh
Confidence 344566777766544333
No 207
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=32.24 E-value=1.8e+02 Score=25.35 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=50.9
Q ss_pred cccCCHH---HHhcCCCccE--EEec--CChhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHH
Q psy10494 28 FFFFLFV---IIIAHPNIKL--FITQ--GGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100 (203)
Q Consensus 28 ~~~~pq~---~iL~~~~~~~--~Ith--gG~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~ 100 (203)
.+++|-. ++|+. |++ |+++ =|.|+++-.+..|+|+++-. +-+.+ .-+.+.|+-+..+.++++...+.
T Consensus 212 ~e~l~f~eYl~lL~~--~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fw-qdl~e~gv~Vlf~~d~L~~~~v~ 285 (322)
T PRK02797 212 TEKLPFDDYLALLRQ--CDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFW-QDLTEQGLPVLFTGDDLDEDIVR 285 (322)
T ss_pred hhhCCHHHHHHHHHh--CCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchH-HHHHhCCCeEEecCCcccHHHHH
Confidence 5566654 58888 665 4443 47999999999999999762 11222 22567788887788888887777
Q ss_pred HHHHHHH
Q psy10494 101 ENIQEIL 107 (203)
Q Consensus 101 ~ai~~ll 107 (203)
++=+++.
T Consensus 286 e~~rql~ 292 (322)
T PRK02797 286 EAQRQLA 292 (322)
T ss_pred HHHHHHH
Confidence 7655543
No 208
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=31.91 E-value=64 Score=24.93 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=23.5
Q ss_pred CccEEEecCC------hhHHHHHHHcCCceeeccc
Q psy10494 41 NIKLFITQGG------LQSLQEAVHFEVPVIGIPF 69 (203)
Q Consensus 41 ~~~~~IthgG------~~s~~Eal~~gvP~i~iP~ 69 (203)
+..++++|+| .+.+.||...++|+|++.-
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 5667888887 4567899999999999953
No 209
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=31.59 E-value=1.7e+02 Score=22.42 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=34.5
Q ss_pred HHcCCceeecccccc--hHHHHHHHHHcCceEEEccCCCCHHHHHHHHH
Q psy10494 58 VHFEVPVIGIPFFGD--QNYNVKIIRRLGIGSYMEFEDIHTETLFENIQ 104 (203)
Q Consensus 58 l~~gvP~i~iP~~~D--Q~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~ 104 (203)
-..|++++++....+ +..-.+.+.+.+-|......+.+...+..+++
T Consensus 129 ~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 129 RARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred HhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 366888888876543 34456677788888888888888888877765
No 210
>KOG2678|consensus
Probab=30.98 E-value=3.1e+02 Score=22.75 Aligned_cols=17 Identities=18% Similarity=0.005 Sum_probs=8.1
Q ss_pred CCCcCCCCccHHHHHHH
Q psy10494 151 HLQPEYWHLTWYEYFGL 167 (203)
Q Consensus 151 ~l~~~~~~~~~~q~~~l 167 (203)
.|+..+..+--|.+-++
T Consensus 198 ~L~~~Serve~y~ksk~ 214 (244)
T KOG2678|consen 198 GLMDVSERVEKYDKSKL 214 (244)
T ss_pred HHHhhhHHHHHHHHhhh
Confidence 34444444444554443
No 211
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=30.70 E-value=1.2e+02 Score=18.08 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10494 165 FGLDVYLVIFSPVILALYGLYRLVLTINRRW 195 (203)
Q Consensus 165 ~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (203)
+.=|+-+.-++++++.+.+..++.+...++.
T Consensus 7 F~s~vGL~Sl~vI~~~igm~~~~~~~F~~k~ 37 (42)
T PF11346_consen 7 FGSDVGLMSLIVIVFTIGMGVFFIRYFIRKM 37 (42)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555444555555555555555555443
No 212
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=30.55 E-value=77 Score=24.84 Aligned_cols=47 Identities=15% Similarity=0.412 Sum_probs=31.4
Q ss_pred HcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHH
Q psy10494 59 HFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQE 105 (203)
Q Consensus 59 ~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ 105 (203)
..|+|---+=+|-|+..|...+.+.|+--+.-++.++.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHH
Confidence 45777666667889999999988899988888888898888887754
No 213
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=30.45 E-value=1.4e+02 Score=19.68 Aligned_cols=15 Identities=20% Similarity=0.321 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhhc
Q psy10494 181 LYGLYRLVLTINRRW 195 (203)
Q Consensus 181 ~~~~~~~~~~~~~~~ 195 (203)
++++..++.++.++.
T Consensus 22 L~~~i~l~~~~~~~~ 36 (79)
T PF04277_consen 22 LILVISLMSKLIRKF 36 (79)
T ss_pred HHHHHHHHHHHHHhh
Confidence 334444455555444
No 214
>PHA02754 hypothetical protein; Provisional
Probab=29.62 E-value=1.1e+02 Score=19.82 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.0
Q ss_pred HHHHHHhchHHHHHHHHHHHHHhhcC
Q psy10494 102 NIQEILNNYDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 102 ai~~ll~~~~~y~~~a~~~s~~~~~~ 127 (203)
.+.+.+.+ ..|++.+++++..+.++
T Consensus 6 Ei~k~i~e-K~Fke~MRelkD~LSe~ 30 (67)
T PHA02754 6 EIPKAIME-KDFKEAMRELKDILSEA 30 (67)
T ss_pred HHHHHHHH-hHHHHHHHHHHHHHhhC
Confidence 45566677 89999999999988764
No 215
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.57 E-value=3.7e+02 Score=23.43 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=31.6
Q ss_pred cccccccCCHHH---HhcCCCccEEEecCChhHHHHHHHcCCceeec
Q psy10494 24 FFFFFFFFLFVI---IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI 67 (203)
Q Consensus 24 ~~~~~~~~pq~~---iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i 67 (203)
+++-.+|+||++ +|.- |++-+-+ |--|+.-|...|+|.+=-
T Consensus 239 rvvklPFvpqddyd~LL~l--cD~n~VR-GEDSFVRAq~agkPflWH 282 (370)
T COG4394 239 RVVKLPFVPQDDYDELLWL--CDFNLVR-GEDSFVRAQLAGKPFLWH 282 (370)
T ss_pred EEEEecCCcHhHHHHHHHh--cccceee-cchHHHHHHHcCCCcEEE
Confidence 344489999974 7777 7776666 578999999999999843
No 216
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=28.76 E-value=79 Score=24.30 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=23.3
Q ss_pred CccEEEecCC------hhHHHHHHHcCCceeecc
Q psy10494 41 NIKLFITQGG------LQSLQEAVHFEVPVIGIP 68 (203)
Q Consensus 41 ~~~~~IthgG------~~s~~Eal~~gvP~i~iP 68 (203)
+..++++|.| ++.+.+|...++|+|++.
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 4667788877 567899999999999996
No 217
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=28.60 E-value=4.2e+02 Score=23.55 Aligned_cols=92 Identities=17% Similarity=0.262 Sum_probs=59.0
Q ss_pred ccccCCHHHHhcCCCccEEEecC---Chh-HHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHH
Q psy10494 27 FFFFFLFVIIIAHPNIKLFITQG---GLQ-SLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFEN 102 (203)
Q Consensus 27 ~~~~~pq~~iL~~~~~~~~Ithg---G~~-s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~a 102 (203)
+.+-.+-.+.|+. .+|+++||= |+| ...|+++-|-|.| .|+..+.+ +|-.-+ +++..+=.++
T Consensus 257 fegR~~~p~fla~-~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GYYY~--~fD~~~G~r~ 322 (364)
T PF10933_consen 257 FEGRFDFPDFLAQ-HTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGYYYP--DFDAFEGARQ 322 (364)
T ss_pred EeeecChHHHHHh-CCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCcCCC--CccHHHHHHH
Confidence 3555555555554 499999995 333 3479999999986 56666665 665444 4455544445
Q ss_pred HHHHHhc----hHHHHHHHHHHHHHhhcCCCCHHHH
Q psy10494 103 IQEILNN----YDRYKKAVKRASDISKTQMMSPRDT 134 (203)
Q Consensus 103 i~~ll~~----~~~y~~~a~~~s~~~~~~p~~~~~~ 134 (203)
+.+.+.+ -+.|+++|+++-..+.- .++...
T Consensus 323 L~~A~~~HD~~~~~Y~~ra~~~l~~~~p--~n~~nv 356 (364)
T PF10933_consen 323 LLRAIREHDADLDAYRARARRLLDRLSP--ENPANV 356 (364)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhhCC--CCHHHH
Confidence 5555433 36899999998887744 455433
No 218
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=28.26 E-value=72 Score=19.90 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 161 WYEYFGLDVYLVIFSPVILALYG 183 (203)
Q Consensus 161 ~~q~~~lDv~~~~~~~~~~~~~~ 183 (203)
+|.|..|-+-.+++..+++++-+
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi 30 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGI 30 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhhccchHHHHHHHHHHH
Confidence 35566666655555544444433
No 219
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.08 E-value=1.1e+02 Score=23.75 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=36.4
Q ss_pred ccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcC
Q psy10494 68 PFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQ 127 (203)
Q Consensus 68 P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~ 127 (203)
|....+..+|..+.+..-++.- -..+.|.+.+.+++.|.|+-+-.+.++++.+...
T Consensus 79 PWt~~~L~aa~el~ee~eeLs~----deke~~~~sl~dL~~d~PkT~vA~~rfKk~~~K~ 134 (158)
T PF10083_consen 79 PWTENALEAANELIEEDEELSP----DEKEQFKESLPDLTKDTPKTKVAATRFKKILSKA 134 (158)
T ss_pred chHHHHHHHHHHHHHHhhcCCH----HHHHHHHhhhHHHhhcCCccHHHHHHHHHHHHHH
Confidence 4445666677766553222111 1346788999999887677777888888777664
No 220
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=27.90 E-value=2.9e+02 Score=27.87 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=51.0
Q ss_pred cCCHHHHhcC-CCccEEEec---CChhHH-HHHHHcCCc---eeecccccchHHHHHHHHHcC-ceEEEccCCCCHHHHH
Q psy10494 30 FFLFVIIIAH-PNIKLFITQ---GGLQSL-QEAVHFEVP---VIGIPFFGDQNYNVKIIRRLG-IGSYMEFEDIHTETLF 100 (203)
Q Consensus 30 ~~pq~~iL~~-~~~~~~Ith---gG~~s~-~Eal~~gvP---~i~iP~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~ 100 (203)
.+|+.++++. ..+++++-. -|+|.+ .|+++++.. +++++-+.- -+ +..| -|+.+++ .+.+++.
T Consensus 447 ~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaG---aa---~~L~~~AllVNP--~D~~~vA 518 (934)
T PLN03064 447 SLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAG---AA---QSLGAGAILVNP--WNITEVA 518 (934)
T ss_pred CCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCc---hH---HHhCCceEEECC--CCHHHHH
Confidence 3666654433 347887765 477655 699999552 222232221 11 1223 4677775 4789999
Q ss_pred HHHHHHHh-chHHHHHHHHHHHHHhhc
Q psy10494 101 ENIQEILN-NYDRYKKAVKRASDISKT 126 (203)
Q Consensus 101 ~ai~~ll~-~~~~y~~~a~~~s~~~~~ 126 (203)
++|.+.|+ +.++-+++.+++.+....
T Consensus 519 ~AI~~AL~M~~~Er~~r~~~~~~~V~~ 545 (934)
T PLN03064 519 ASIAQALNMPEEEREKRHRHNFMHVTT 545 (934)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhccc
Confidence 99999987 413344444445554444
No 221
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=26.69 E-value=1e+02 Score=20.98 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy10494 171 LVIFSPVILALYGLYRLVLTI 191 (203)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~ 191 (203)
+|++++++++.+++++++|.+
T Consensus 32 aFV~~L~~fL~~liVRCfrIl 52 (81)
T PF11057_consen 32 AFVGLLCLFLGLLIVRCFRIL 52 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 334344444444555555554
No 222
>PHA03240 envelope glycoprotein M; Provisional
Probab=25.94 E-value=83 Score=25.89 Aligned_cols=21 Identities=5% Similarity=0.306 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhhccCCc
Q psy10494 179 LALYGLYRLVLTINRRWSNGK 199 (203)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~k 199 (203)
+++.+++++=.+++-+|...|
T Consensus 225 IIIL~cfKiPQKl~dKw~~~k 245 (258)
T PHA03240 225 VIILFFFKIPQKLFDKWDLHG 245 (258)
T ss_pred HHHHHHHhccHHHHHHHhhhc
Confidence 333445566667777775544
No 223
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=25.84 E-value=1.6e+02 Score=23.99 Aligned_cols=39 Identities=13% Similarity=0.008 Sum_probs=27.0
Q ss_pred hhHHHHHHHcCCceeecccccc--hHHHHHHHHHcCceEEE
Q psy10494 51 LQSLQEAVHFEVPVIGIPFFGD--QNYNVKIIRRLGIGSYM 89 (203)
Q Consensus 51 ~~s~~Eal~~gvP~i~iP~~~D--Q~~na~~~~~~G~G~~l 89 (203)
+.+...|+..|+|+.++|-..+ +..-+..+-+.|+..+.
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 6778888999999999986443 33434555567865443
No 224
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=25.67 E-value=1.1e+02 Score=25.63 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=40.0
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHcCCceeec--ccccchHHHHHHHHHcCce-EEE---ccCCCCHHHHHHHHHHHH
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI--PFFGDQNYNVKIIRRLGIG-SYM---EFEDIHTETLFENIQEIL 107 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i--P~~~DQ~~na~~~~~~G~G-~~l---~~~~~~~~~l~~ai~~ll 107 (203)
.++.+ ++++|+.- .|.++=|.+.|+|.+++ |-...+ ..-.|-. ..+ ....++++++.++++++|
T Consensus 250 ali~~--a~l~I~~D-Sgp~HlAaa~g~P~i~lfg~t~p~~------~~P~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 250 ALLAG--ADAVVGVD-TGLTHLAAALDKPTVTLYGATDPGR------TGGYGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHHc--CCEEEeCC-ChHHHHHHHcCCCEEEEECCCCHhh------cccCCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 56666 99999985 45566677889999987 321111 1011111 011 245789999999998764
No 225
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=25.62 E-value=32 Score=26.40 Aligned_cols=20 Identities=15% Similarity=0.396 Sum_probs=7.3
Q ss_pred HHHhCCCCCCCCcCCCCccHH
Q psy10494 142 LLKADGNVSHLQPEYWHLTWY 162 (203)
Q Consensus 142 v~~~~~~~~~l~~~~~~~~~~ 162 (203)
+-++|. ...+.|+....+|+
T Consensus 84 v~rYG~-~Vl~~Pp~~~~~~~ 103 (148)
T PF03918_consen 84 VERYGE-FVLYEPPFKGFTWL 103 (148)
T ss_dssp HHHHTT-T-EES--S------
T ss_pred HHhcCc-ceeecCCCCccHHH
Confidence 347876 66677776655555
No 226
>PF15013 CCSMST1: CCSMST1 family
Probab=25.55 E-value=52 Score=22.47 Aligned_cols=15 Identities=13% Similarity=0.625 Sum_probs=10.3
Q ss_pred cCCCCccHHHHHHHH
Q psy10494 154 PEYWHLTWYEYFGLD 168 (203)
Q Consensus 154 ~~~~~~~~~q~~~lD 168 (203)
+...+++|||.|.+-
T Consensus 23 ~~~~~~PWyq~~~is 37 (77)
T PF15013_consen 23 GKQQRMPWYQVYPIS 37 (77)
T ss_pred CCCCCCcceeeehhH
Confidence 344467999998743
No 227
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=25.12 E-value=1.5e+02 Score=19.22 Aligned_cols=48 Identities=13% Similarity=0.044 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy10494 95 HTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143 (203)
Q Consensus 95 ~~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~ 143 (203)
+.+.....+.+-..+ +...+++.++++-+...+....+.+...++.+.
T Consensus 15 s~~~Y~~~l~~y~~~-~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~~I~ 62 (67)
T PF01099_consen 15 SPEEYKESLQKYNPP-PEAVEAKLELKQCVDKLSNETRENILKLLEKIY 62 (67)
T ss_dssp -HHHHHHHHHCC----HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 667777777777777 889999999999998765444555556655554
No 228
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=24.93 E-value=3e+02 Score=20.59 Aligned_cols=18 Identities=11% Similarity=0.125 Sum_probs=13.3
Q ss_pred HhCCCCCCCCcCCCCccHH
Q psy10494 144 KADGNVSHLQPEYWHLTWY 162 (203)
Q Consensus 144 ~~~~~~~~l~~~~~~~~~~ 162 (203)
|+|. ...++|+-...+|+
T Consensus 86 RYG~-~Vly~Pp~~~~t~~ 103 (126)
T TIGR03147 86 RFGD-FVLYNPPFKWQTLL 103 (126)
T ss_pred hcCC-eEEecCCCCcchHH
Confidence 6877 77888887666665
No 229
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=24.87 E-value=51 Score=26.79 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=19.6
Q ss_pred CccEEEecCChhHHHHHHHcCCce
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVPV 64 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP~ 64 (203)
..-++|||||...+.=+...|.|.
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 456899999998888888888763
No 230
>PRK13463 phosphatase PhoE; Provisional
Probab=24.86 E-value=57 Score=25.83 Aligned_cols=24 Identities=8% Similarity=0.127 Sum_probs=19.6
Q ss_pred CccEEEecCChhHHHHHHHcCCce
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVPV 64 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP~ 64 (203)
..-++|+|||.....-+-..|.|.
T Consensus 144 ~~vlvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 144 ESILIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred CEEEEEeChHHHHHHHHHHhCCCH
Confidence 456899999999888888777665
No 231
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=24.46 E-value=57 Score=26.44 Aligned_cols=24 Identities=13% Similarity=-0.051 Sum_probs=19.3
Q ss_pred CccEEEecCChhHHHHHHHcCCce
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVPV 64 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP~ 64 (203)
..-++|||||...+.=+...|.|.
T Consensus 175 ~~vlvVsHg~vir~l~~~~~~~~~ 198 (228)
T PRK14119 175 QTVLVSAHGNSIRALIKYLEDVSD 198 (228)
T ss_pred CeEEEEeChHHHHHHHHHHhCCCH
Confidence 456899999998888887778763
No 232
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=24.44 E-value=56 Score=24.87 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=18.5
Q ss_pred CccEEEecCChhHHHHHHHcCCc
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVP 63 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP 63 (203)
+.-++|+|||....+-+...|.|
T Consensus 138 ~~vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 138 DNVLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred CeEEEEECHHHHHHHHHHHhCCC
Confidence 45689999999888877777766
No 233
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=24.33 E-value=1.3e+02 Score=24.82 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy10494 111 DRYKKAVKRASDISKTQMMSPRDTAVWWVE 140 (203)
Q Consensus 111 ~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie 140 (203)
...|+++..++..+.+.. .-++.+..-++
T Consensus 177 ~~LK~~s~~~~~~l~~D~-~~L~~~~~~~d 205 (251)
T PF09753_consen 177 RQLKENSLAFSQILKEDN-KVLDRTEEGLD 205 (251)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 357777777777776632 33444444443
No 234
>PF14350 Beta_protein: Beta protein
Probab=24.21 E-value=1.1e+02 Score=26.49 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=26.9
Q ss_pred ceeecccccchHHHHHHHH---HcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 63 PVIGIPFFGDQNYNVKIIR---RLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 63 P~i~iP~~~DQ~~na~~~~---~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
|++.+--..+.......+. ..|+++.+...++..+++...+.+++..
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~~ 148 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILAA 148 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHHH
Confidence 4444433333333333333 4667777777777666777777777654
No 235
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=24.08 E-value=2.2e+02 Score=25.16 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q psy10494 97 ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYL 142 (203)
Q Consensus 97 ~~l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~~~~~a~~~ie~v 142 (203)
++|.++..+..+| ++|++....+-+.+..+| +|+-.|..+.+++
T Consensus 26 ~eLe~ay~~~~~D-~~F~~el~~~l~~Y~GRp-tpLy~a~~Lt~~~ 69 (396)
T COG0133 26 EELEKAYEKAKND-PEFQAELDYLLKDYAGRP-TPLYFAERLTEHL 69 (396)
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhh
Confidence 5677777777788 999999999999999998 7777777766664
No 236
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=23.94 E-value=86 Score=26.42 Aligned_cols=31 Identities=26% Similarity=0.578 Sum_probs=25.2
Q ss_pred CCCccEEEecCChhHHHHHHHc----CCceeeccc
Q psy10494 39 HPNIKLFITQGGLQSLQEAVHF----EVPVIGIPF 69 (203)
Q Consensus 39 ~~~~~~~IthgG~~s~~Eal~~----gvP~i~iP~ 69 (203)
...++++|+-||=||+..+... ++|+++++.
T Consensus 74 ~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 74 EEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred ccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 4469999999999999998763 679999874
No 237
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=23.82 E-value=2.1e+02 Score=18.54 Aligned_cols=35 Identities=14% Similarity=0.222 Sum_probs=22.9
Q ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 156 YWHLTWYEYFGLDVYLVIFSPVILALYGLYRLVLT 190 (203)
Q Consensus 156 ~~~~~~~q~~~lDv~~~~~~~~~~~~~~~~~~~~~ 190 (203)
+...+-|-..++-++.+++.+..++++.+|+++.+
T Consensus 31 ~ltqneYlt~MiGiWiVilFLtWf~lwm~fKiv~~ 65 (67)
T PF10854_consen 31 NLTQNEYLTIMIGIWIVILFLTWFLLWMVFKIVGY 65 (67)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566667777777777777777777766543
No 238
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=23.73 E-value=3.2e+02 Score=24.33 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=49.5
Q ss_pred cccCCHHHHhcCCCccEEEecCC------------hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCC
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGG------------LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG------------~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~ 95 (203)
.+++-..+.+.. +|++||--| .+-..-|-.+|+|++++-=.- ..+...+.+.|+--+....+ .
T Consensus 272 ~~~~~l~~~l~~--ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v--~~~~~~~~~~g~~a~~~i~~-~ 346 (375)
T TIGR00045 272 LELLDLEQKIKD--ADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSL--GDGVDVLPQHGIDAAFSILP-S 346 (375)
T ss_pred HHhhCHHHHhcC--CCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEeccc--CCChHHHHhcCccEEEEcCC-C
Confidence 677777888888 999999877 233345667899999884211 12233455667655444322 2
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHH
Q psy10494 96 TETLFENIQEILNNYDRYKKAVKRASD 122 (203)
Q Consensus 96 ~~~l~~ai~~ll~~~~~y~~~a~~~s~ 122 (203)
+.++.+++++-- ....+.++++.+
T Consensus 347 ~~~l~~a~~~~~---~~l~~~~~~~~~ 370 (375)
T TIGR00045 347 PMPLEDALQNAS---TNLERTAENIAR 370 (375)
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHH
Confidence 233555554432 223444444443
No 239
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=23.27 E-value=1.7e+02 Score=23.07 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=27.8
Q ss_pred HHhcCCCccEEE-ecCChhHHHHHHH---------cCCceeeccc--ccchHH-HHHHHHHcCc
Q psy10494 35 IIIAHPNIKLFI-TQGGLQSLQEAVH---------FEVPVIGIPF--FGDQNY-NVKIIRRLGI 85 (203)
Q Consensus 35 ~iL~~~~~~~~I-thgG~~s~~Eal~---------~gvP~i~iP~--~~DQ~~-na~~~~~~G~ 85 (203)
.++.. .+++|| --||.||+.|.+. +.+|++++-. +.|... ..+.+.+.|.
T Consensus 91 ~~m~~-~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 91 AMMAE-LADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred HHHHH-hCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 44443 355554 4567899988743 4889888732 233322 2345555553
No 240
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=22.98 E-value=1e+02 Score=26.04 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHcCCceeec
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI 67 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i 67 (203)
.++..-+-|++|+.++..+..-|-..|+|.+.+
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 556666789999999999999999999999976
No 241
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=22.78 E-value=1.1e+02 Score=22.58 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=20.0
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHc---------CC-ceeecc
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHF---------EV-PVIGIP 68 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~---------gv-P~i~iP 68 (203)
.+|-...-..++..||.||+.|.... .. |++.+-
T Consensus 48 ~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~ 91 (133)
T PF03641_consen 48 EIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLN 91 (133)
T ss_dssp HHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEE
T ss_pred HHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeC
Confidence 44443333345667889999887532 34 888774
No 242
>PRK13057 putative lipid kinase; Reviewed
Probab=22.68 E-value=96 Score=25.96 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=24.6
Q ss_pred CCccEEEecCChhHHHHHH----HcCCceeeccc
Q psy10494 40 PNIKLFITQGGLQSLQEAV----HFEVPVIGIPF 69 (203)
Q Consensus 40 ~~~~~~IthgG~~s~~Eal----~~gvP~i~iP~ 69 (203)
+..+.+|.-||=||+.|++ ..+.|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 3478999999999998885 34688889996
No 243
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=22.11 E-value=98 Score=24.16 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhc
Q psy10494 74 NYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNN 109 (203)
Q Consensus 74 ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~ 109 (203)
...+..=++.|+|+.+ |++++.++|.+.++.
T Consensus 102 ~d~~~Fe~~cGVGV~V-----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 102 IDVAEFEKACGVGVVV-----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp --HHHHHHTTTTT---------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCCeEE-----CHHHHHHHHHHHHHH
Confidence 4444555668999877 789999999999865
No 244
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=22.11 E-value=2.4e+02 Score=18.39 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHhhcc
Q psy10494 167 LDVYLVIFSPVI--LALYGLYRLVLTINRRWS 196 (203)
Q Consensus 167 lDv~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 196 (203)
.|++.++.+.+. ++-++.+.++|.+|+.+.
T Consensus 27 vdiiiflailfgftiagwlvvfcirlv~sail 58 (73)
T PF07069_consen 27 VDIIIFLAILFGFTIAGWLVVFCIRLVCSAIL 58 (73)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 466655544333 344455556666666543
No 245
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=22.07 E-value=1.1e+02 Score=26.22 Aligned_cols=35 Identities=29% Similarity=0.336 Sum_probs=27.7
Q ss_pred HhcCCCccEEEecCChhHHHHHHH----cCCceeecccc
Q psy10494 36 IIAHPNIKLFITQGGLQSLQEAVH----FEVPVIGIPFF 70 (203)
Q Consensus 36 iL~~~~~~~~IthgG~~s~~Eal~----~gvP~i~iP~~ 70 (203)
.|..-+.+.+|.=||-+|..-+.. .++|++++|-.
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 455567999999999888865542 69999999964
No 246
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=22.05 E-value=30 Score=29.70 Aligned_cols=19 Identities=21% Similarity=0.097 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhccCCccC
Q psy10494 183 GLYRLVLTINRRWSNGKLK 201 (203)
Q Consensus 183 ~~~~~~~~~~~~~~~~k~k 201 (203)
++..+..++.|+-+++|.+
T Consensus 161 IA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 161 IAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHHhhhhhhccccc
Confidence 3344444555555566644
No 247
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.90 E-value=3.9e+02 Score=23.49 Aligned_cols=95 Identities=21% Similarity=0.207 Sum_probs=50.9
Q ss_pred HHhcCCCccEEEecCChhHHHHHHHcCCceeec-ccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHH
Q psy10494 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI-PFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRY 113 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s~~Eal~~gvP~i~i-P~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y 113 (203)
++|-. ++++|+-||. .--||+..|+|.|.+ |- .-..--++..+.|. .... -++.++.+.+.+.+.+ +..
T Consensus 248 ~Llyy--a~lvig~ggT-MarEaAlLGtpaIs~~pG--kll~vdk~lie~G~--~~~s--~~~~~~~~~a~~~l~~-~~~ 317 (346)
T COG1817 248 SLLYY--ATLVIGAGGT-MAREAALLGTPAISCYPG--KLLAVDKYLIEKGL--LYHS--TDEIAIVEYAVRNLKY-RRL 317 (346)
T ss_pred HHHhh--hheeecCCch-HHHHHHHhCCceEEecCC--ccccccHHHHhcCc--eeec--CCHHHHHHHHHHHhhc-hhh
Confidence 36666 7788877653 467999999999965 42 11112233445554 3432 1333333333344434 222
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHhC
Q psy10494 114 KKAVKRASDISKTQMMSPRDTAVWWVEYLLKAD 146 (203)
Q Consensus 114 ~~~a~~~s~~~~~~p~~~~~~a~~~ie~v~~~~ 146 (203)
++. -.-...++.+..++.+|.+.+..
T Consensus 318 kK~-------~~~k~e~~~~~ii~~ve~~~e~~ 343 (346)
T COG1817 318 KKT-------GVLKLEDPTRLIIDVVEEMLETS 343 (346)
T ss_pred ccc-------cccccccHHHHHHHHHHHHhhhc
Confidence 111 11122467777788888877653
No 248
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.90 E-value=2.5e+02 Score=22.04 Aligned_cols=35 Identities=11% Similarity=-0.010 Sum_probs=26.2
Q ss_pred HHHHcCCceeecccc----cchHHHHHHHHHcCceEEEc
Q psy10494 56 EAVHFEVPVIGIPFF----GDQNYNVKIIRRLGIGSYME 90 (203)
Q Consensus 56 Eal~~gvP~i~iP~~----~DQ~~na~~~~~~G~G~~l~ 90 (203)
.++..++|+++.|-. .-+..|...+.+.|+-+.-.
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~P 145 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILPP 145 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEECC
Confidence 367899999999952 23577888888888876544
No 249
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=21.65 E-value=86 Score=24.67 Aligned_cols=25 Identities=8% Similarity=-0.009 Sum_probs=18.7
Q ss_pred CccEEEecCChhHHHHHHHcCCcee
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVPVI 65 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP~i 65 (203)
..-++|||||.....=+...|.|.-
T Consensus 145 ~~vliVsHg~~ir~ll~~~lg~~~~ 169 (204)
T TIGR03848 145 AVWVACSHGDVIKSVLADALGMHLD 169 (204)
T ss_pred CEEEEEeCChHHHHHHHHHhCCCHH
Confidence 3457999999887777777776653
No 250
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=21.58 E-value=4.2e+02 Score=21.10 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=34.9
Q ss_pred HcCCceeecccccchHHHHHHHHHcCceEEEccCCCCHHHHHHHHHHHHhchHHH
Q psy10494 59 HFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRY 113 (203)
Q Consensus 59 ~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~~~~l~~ai~~ll~~~~~y 113 (203)
..+.|+|++-...+.......+.+.|+-=.+.+ +.+.+++.++|+.+++. ..|
T Consensus 66 ~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K-~~~~~eL~~aI~~v~~G-~~~ 118 (207)
T PRK11475 66 FPRMRRLVIADDDIEARLIGSLSPSPLDGVLSK-ASTLEILQQELFLSLNG-VRQ 118 (207)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHCC-Ccc
Confidence 346788887654444334444546776445553 56889999999999986 443
No 251
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=21.54 E-value=1.2e+02 Score=23.74 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10494 170 YLVIFSPVILALYGLYRLVLTI 191 (203)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~ 191 (203)
|.+..+..++++|++++++|.-
T Consensus 99 ~Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 99 YVLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4444455566667777777644
No 252
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=21.47 E-value=68 Score=26.03 Aligned_cols=24 Identities=8% Similarity=-0.089 Sum_probs=18.6
Q ss_pred CccEEEecCChhHHHHHHHcCCce
Q psy10494 41 NIKLFITQGGLQSLQEAVHFEVPV 64 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~~gvP~ 64 (203)
..-++|||||...+.=+...|.|.
T Consensus 174 ~~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 174 KRVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 456899999988777777777664
No 253
>PRK10342 glycerate kinase I; Provisional
Probab=21.24 E-value=4.8e+02 Score=23.35 Aligned_cols=90 Identities=21% Similarity=0.191 Sum_probs=53.4
Q ss_pred cccCCHHHHhcCCCccEEEecCC------------hhHHHHHHHcCCceeecccccchHHHHHHHHHcCceEEEccCCCC
Q psy10494 28 FFFFLFVIIIAHPNIKLFITQGG------------LQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95 (203)
Q Consensus 28 ~~~~pq~~iL~~~~~~~~IthgG------------~~s~~Eal~~gvP~i~iP~~~DQ~~na~~~~~~G~G~~l~~~~~~ 95 (203)
.+++...+.+.. ++++||-=| .+-..-|-.+++|++.+-=.- ..+...+.+.|+--+....+ .
T Consensus 273 ~~~~~l~~~l~~--ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~--~~~~~~~~~~g~~av~~i~~-~ 347 (381)
T PRK10342 273 TTALNLEEHIHD--CTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSL--TDDVGVVHQHGIDAVFSVLT-S 347 (381)
T ss_pred HHhcCHHHHhcc--CCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEeccc--CCChHHHHhcCceEEEEcCC-C
Confidence 677777888888 999999777 233355677899999984221 11224466677765554322 2
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHhh
Q psy10494 96 TETLFENIQEILNNYDRYKKAVKRASDISK 125 (203)
Q Consensus 96 ~~~l~~ai~~ll~~~~~y~~~a~~~s~~~~ 125 (203)
+.++.+++++-. +..+..++++.+.++
T Consensus 348 ~~~l~~a~~~~~---~~l~~~~~~i~r~~~ 374 (381)
T PRK10342 348 IGTLDEAFRGAY---DNICRASRNIAATLA 374 (381)
T ss_pred CCCHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 234555555442 234555555555443
No 254
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=21.20 E-value=2.4e+02 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHH
Q psy10494 132 RDTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFGLDVYLVIFSPVILA 180 (203)
Q Consensus 132 ~~~a~~~ie~v~~~~~~~~~l~~~~~~~~~~q~~~lDv~~~~~~~~~~~ 180 (203)
-.++..|+.. +.++ +-+. ....-.|+|=.++++|+.++.++++++
T Consensus 256 wsrl~~Wla~--~~P~-~~y~-lttPLfSfFGlfDInv~gviiil~ii~ 300 (323)
T PHA02688 256 WSRLGTWLAK--RYPG-FYYF-LTTPLFSFFGLFDINVIGVIIILFIIV 300 (323)
T ss_pred HHHHHHHHHh--hCCc-hhee-ecchHHHhhccchhHHHHHHHHHHHHH
Confidence 4556667664 4444 3222 222366788888888877655544443
No 255
>PHA00646 hypothetical protein
Probab=20.88 E-value=1.5e+02 Score=19.26 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 162 YEYFGLDVYLVIFSPVILALYGLYRLVLT 190 (203)
Q Consensus 162 ~q~~~lDv~~~~~~~~~~~~~~~~~~~~~ 190 (203)
|-..++-++++++..+.++++..+++++.
T Consensus 35 Y~~~MVgIWlvI~Fl~Wf~i~mvfKiv~~ 63 (65)
T PHA00646 35 YLTLMVGIWLVILFLTWFSLWMVFKIVGY 63 (65)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 33455566777766677777777776654
No 256
>PF14851 FAM176: FAM176 family
Probab=20.64 E-value=1.4e+02 Score=23.09 Aligned_cols=23 Identities=17% Similarity=-0.099 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10494 170 YLVIFSPVILALYGLYRLVLTIN 192 (203)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~ 192 (203)
|++..+|+.+++.++..+++..|
T Consensus 25 YFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhee
Confidence 33444555566666666777666
No 257
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=20.60 E-value=1.2e+02 Score=26.29 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHhcCCCccEEEecCChhH---HHHHHHcCCceeec
Q psy10494 35 IIIAHPNIKLFITQGGLQS---LQEAVHFEVPVIGI 67 (203)
Q Consensus 35 ~iL~~~~~~~~IthgG~~s---~~Eal~~gvP~i~i 67 (203)
.++..-+-++++++||.-| ...|...|+|.++.
T Consensus 85 ~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 85 VRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 4677788899999999886 89999999999875
No 258
>KOG4180|consensus
Probab=20.56 E-value=50 Score=28.97 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=23.5
Q ss_pred CccEEEecCChhHHHHHHH----cCCceeec
Q psy10494 41 NIKLFITQGGLQSLQEAVH----FEVPVIGI 67 (203)
Q Consensus 41 ~~~~~IthgG~~s~~Eal~----~gvP~i~i 67 (203)
.++++|+-||-||+.-|.. -.+|+|++
T Consensus 105 waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 105 WADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred hhhEEEEecCccceeehhhhhhccCCceeee
Confidence 4999999999999987765 57999998
No 259
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=20.37 E-value=1.1e+02 Score=25.48 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=22.6
Q ss_pred CCccEEEecCChhHHHHHHHc-----CCceee-ccc
Q psy10494 40 PNIKLFITQGGLQSLQEAVHF-----EVPVIG-IPF 69 (203)
Q Consensus 40 ~~~~~~IthgG~~s~~Eal~~-----gvP~i~-iP~ 69 (203)
...+++|.-||=||+.|++.. ..|.++ +|.
T Consensus 56 ~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 56 FGVDTVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred cCCCEEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 357899999999999996643 345555 886
No 260
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=20.28 E-value=2.4e+02 Score=23.75 Aligned_cols=52 Identities=27% Similarity=0.537 Sum_probs=36.3
Q ss_pred CCccEEEecCChhHHHHHHHcC----CceeecccccchHHHHHHHHHcC-ceEEEccCCCCHHHHHHHHHHHHh
Q psy10494 40 PNIKLFITQGGLQSLQEAVHFE----VPVIGIPFFGDQNYNVKIIRRLG-IGSYMEFEDIHTETLFENIQEILN 108 (203)
Q Consensus 40 ~~~~~~IthgG~~s~~Eal~~g----vP~i~iP~~~DQ~~na~~~~~~G-~G~~l~~~~~~~~~l~~ai~~ll~ 108 (203)
..+++++.=||-||+..+.... +|++++=. | +|... ++..+++.+++.++++
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~--------------G~lGFLt---~~~~~~~~~~~~~~~~ 110 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINL--------------GHLGFLT---DFEPDELEKALDALLE 110 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeC--------------CCccccc---ccCHHHHHHHHHHHhc
Confidence 4589999999999999887654 47777732 2 34333 3456777777777775
No 261
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=20.24 E-value=4.6e+02 Score=21.35 Aligned_cols=30 Identities=10% Similarity=0.233 Sum_probs=17.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHHHHHhhcCCCC
Q psy10494 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMS 130 (203)
Q Consensus 99 l~~ai~~ll~~~~~y~~~a~~~s~~~~~~p~~ 130 (203)
-++.+.+++. ..+++.+.+..-.....+.+
T Consensus 89 ~kk~v~~~v~--~~f~~~a~~~gv~~~~~~~~ 118 (207)
T PF11814_consen 89 EKKEVMELVH--EDFREEAEQAGVPVHYRPLS 118 (207)
T ss_pred HHHHHHHHHH--HHHHHHHHHCCCceecCCCC
Confidence 3344444443 46777777766666665544
No 262
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=20.02 E-value=1.5e+02 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=22.4
Q ss_pred hhHHHHHHHcCCceeeccccc--chHHHHHHHHHcCceEEE
Q psy10494 51 LQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYM 89 (203)
Q Consensus 51 ~~s~~Eal~~gvP~i~iP~~~--DQ~~na~~~~~~G~G~~l 89 (203)
+.++-+|+..|+|+.++|-.. ++..-...+-+.| +..+
T Consensus 171 ~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 171 LHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp HHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 688899999999999997543 4455556777777 4443
Done!