RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10494
(203 letters)
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 101 bits (255), Expect = 2e-25
Identities = 40/137 (29%), Positives = 77/137 (56%), Gaps = 1/137 (0%)
Query: 39 HPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98
H N+K F+TQGG+QS EA+ VP++G+P GDQ YN LGIG ++ +
Sbjct: 362 HKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQ 421
Query: 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYWH 158
L I +++ N +Y+K +K + + Q M+P A+W+ E++++ + L+ + +
Sbjct: 422 LVLAIVDVIEN-PKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAAN 480
Query: 159 LTWYEYFGLDVYLVIFS 175
+++ +YF + + + +
Sbjct: 481 VSYSDYFMSYILVPLVT 497
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 97.9 bits (244), Expect = 6e-24
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 11/164 (6%)
Query: 39 HPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98
HP + F+T G + EA+ VP++G+P FGDQ N K + G + + +E
Sbjct: 339 HPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLTMTSED 398
Query: 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYWH 158
L ++ ++N+ YK+ + R S I Q + P D AV+W+E++++ G HL+P
Sbjct: 399 LLNALKTVIND-PSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKG-AKHLRPAAHD 456
Query: 159 LTWYEYFGLDVY--------LVIFSPVILALYGLYRLVLTINRR 194
LTWY+Y LDV V F L+G YR + +R
Sbjct: 457 LTWYQYHSLDVIGFLLACVATVAFITFKCCLFG-YRKFVGKKKR 499
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 70.2 bits (172), Expect = 2e-14
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
I GG + EA++ VP++ IP DQ N + + LG G + FE++ E L +
Sbjct: 303 AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAV 362
Query: 104 QEILNNYDRYKKAVKRASDISKTQMMSPRDTA 135
E+L + D Y++A +R ++ K + P A
Sbjct: 363 NEVLAD-DSYRRAAERLAEEFKEE-DGPAKAA 392
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 57.8 bits (140), Expect = 4e-10
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
P + GG + A+ VP + +PFFGDQ + + LG G ++ ++ E L
Sbjct: 303 PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERL 362
Query: 100 FENIQEILNNYDRYKKAVKRASDI 123
++ +L+ ++A I
Sbjct: 363 AAALRRLLDP-PSRRRAAALLRRI 385
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 54.3 bits (131), Expect = 6e-09
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
FIT GG+ S EA+ VP++ +P DQ + I LG+G ++ E++ E L E +
Sbjct: 294 AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAV 353
Query: 104 QEILNNYDRYKKAVKR 119
+L++ RY + +++
Sbjct: 354 LAVLSD-PRYAERLRK 368
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 42.5 bits (100), Expect = 6e-05
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK-IIRRLGIG 86
V+I++HP I F+T G S E + VP+I P F +Q N K I+ L IG
Sbjct: 355 VLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIG 408
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 40.6 bits (95), Expect = 2e-04
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 41 NIKLFITQGGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYMEFEDIHTET 98
N +L IT GG + EA+ P+I IP G +Q N + LG G +E++++
Sbjct: 247 NAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKELRLLE 306
Query: 99 LFENIQEI 106
+I+ +
Sbjct: 307 AILDIRNM 314
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 40.0 bits (94), Expect = 4e-04
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV-KIIRRLGIGSYME 90
I+AH + F+T G S+ E++ VP+ P + +Q+ N +++ +G+ M+
Sbjct: 352 ILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMK 407
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 43 KLFITQGGLQSLQEAVHFEVPVIGIPFFG--DQNYNVKIIRRLGIGSYMEFEDI 94
I G + L EA++ P++ +P G +Q N + RLG G M+ ED+
Sbjct: 251 SAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDL 304
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 38.5 bits (90), Expect = 0.001
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPF----FGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
L I++ G ++ E + VP I +P+ G Q YN K + + G + ++ E L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 100 FENIQEILNNYDRYKKAVKRASDISK 125
E I +L+N ++ K + A + K
Sbjct: 315 AELILRLLSNPEKLKAMAENAKKLGK 340
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 38.2 bits (89), Expect = 0.002
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK 78
++AHP++ F+T G S EA+ VPV+ P +GDQ +
Sbjct: 350 VLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAV 392
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 37.9 bits (88), Expect = 0.002
Identities = 23/104 (22%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV-KIIRRLGIGSYMEF- 91
V I+AH I F++ G S+ E++ F VP+ P + +Q N +++ LG+ +
Sbjct: 351 VEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLD 410
Query: 92 ------EDIHTETLFENIQEILNNYDRYKKAVKRASDISKTQMM 129
E + + + ++ +++ D +K VK ++ ++ +M
Sbjct: 411 YVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVM 454
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 37.7 bits (87), Expect = 0.003
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGI 85
I+AH + F+T G S E+V VP+I P F +QN N ++ LGI
Sbjct: 351 ILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGI 401
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 36.9 bits (85), Expect = 0.004
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK-IIRRLGIGSYMEFEDI 94
I++H I F+T G S E V VPV+ P + DQ + + ++ GIG M + +
Sbjct: 337 ILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAV 396
Query: 95 HTETLFENIQ 104
E E ++
Sbjct: 397 DGELKVEEVE 406
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 36.6 bits (84), Expect = 0.005
Identities = 26/106 (24%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYN-VKIIRRLGIGSYMEFE 92
V ++ H + F+T G S+ EAV VP++ P + +Q +N V I+ + I M
Sbjct: 345 VPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNES 404
Query: 93 D---IHTETLFENIQEILNNYDRYKK--AVKRASDISKTQMMSPRD 133
+ + + + + +QEI+ ++ A+K A++++ T+ S
Sbjct: 405 ETGFVSSTEVEKRVQEIIGECPVRERTMAMKNAAELALTETGSSHT 450
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 36.5 bits (85), Expect = 0.006
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPF---FGDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100
L I++ G ++ E VP I IP+ DQ YN K + LG G + +++ E L
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312
Query: 101 ENIQEILNNYDRYKKAVKRASDISK 125
E + ++L + + + A ++K
Sbjct: 313 EALLKLLLDPANLEAMAEAARKLAK 337
>gnl|CDD|171505 PRK12446, PRK12446, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase; Reviewed.
Length = 352
Score = 36.0 bits (83), Expect = 0.009
Identities = 22/79 (27%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 46 ITQGGLQSLQEAVHFEVPVIGIPFF-----GDQNYNVKIIRRLGIGSYMEFEDIHTETLF 100
I++ G ++ E + + P++ IP GDQ N + R G S + ED+ +L
Sbjct: 257 ISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLI 316
Query: 101 ENIQEILNNYDRYKKAVKR 119
++++E+ +N ++YK A+K+
Sbjct: 317 KHVEELSHNNEKYKTALKK 335
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 36.2 bits (83), Expect = 0.009
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR-RLGIGSYMEFED 93
+I++HP++ F++ G S+ E++ + ++ +P GDQ N +++ L + + E+
Sbjct: 329 LILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREE 388
Query: 94 ---IHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSP 131
E+L + I ++ VK+ + + SP
Sbjct: 389 TGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLASP 429
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 35.0 bits (81), Expect = 0.010
Identities = 21/127 (16%), Positives = 44/127 (34%), Gaps = 17/127 (13%)
Query: 17 KRNFTKFFFFFFFFFLFVIIIA-HPNIKLF-------ITQGGLQSLQEAVHFEVPVIGIP 68
K ++ + F + V + N+ + I++ G ++ E + P I +P
Sbjct: 40 KSDYEPVNCKYSKFGINVEVFPFIDNMAEYIKAADLVISRAGAGTIAELLALGKPAILVP 99
Query: 69 ----FFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRY-----KKAVKR 119
Q+ N + + G + +++ E L E + ++L R R
Sbjct: 100 RPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVEALLKLLLKPLRLYEMNKAAKGSR 159
Query: 120 ASDISKT 126
D K
Sbjct: 160 LKDAIKR 166
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 34.8 bits (80), Expect = 0.024
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYN 76
V ++A P I F+T G S+ E++ F VP+ P + +Q +N
Sbjct: 353 VAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFN 395
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 33.8 bits (78), Expect = 0.048
Identities = 17/42 (40%), Positives = 22/42 (52%)
Query: 39 HPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 80
H ++ F T G S EAV VP++ P F DQ N K+I
Sbjct: 339 HSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI 380
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 33.9 bits (77), Expect = 0.050
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR 81
++++ I F+T G S E + VP++ +P + DQ N K I+
Sbjct: 330 VLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQ 375
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 33.5 bits (76), Expect = 0.059
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRL 83
++ H + F+T G S E++ VPV+ P + DQ N K++ +
Sbjct: 340 VLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEI 387
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 33.1 bits (75), Expect = 0.098
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNV-KIIRRLGIGSYMEFE 92
V I+AH + F++ G S+ E++ F VP++ P + +Q N +++ L + ++ +
Sbjct: 343 VEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLD 402
Query: 93 -DIHT---------ETLFENIQEILNNYDRYKKAVKRASDISK 125
+H+ ET + NN R KR DIS+
Sbjct: 403 YRVHSDEIVNANEIETAIRCVMNKDNNVVR-----KRVMDISQ 440
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 32.1 bits (74), Expect = 0.15
Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 53 SLQEAVHFEVPVIGIPF----FGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILN 108
++ E +P I IP Q N + + + G + E++ E L + E+L+
Sbjct: 264 TVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLS 323
Query: 109 NYDRYKKAVKRASDISK 125
+ +R K + A +++
Sbjct: 324 DPERLKAMAEAARSLAR 340
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 31.9 bits (72), Expect = 0.21
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-RRLGIGSYMEFED 93
+I++HP++ F+ G S+ E++ + ++ IP DQ +++ L + ++ ED
Sbjct: 324 LILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQRED 383
Query: 94 ---IHTETLFENIQEILNNYDRYKKAVKRASDISKTQMMSP 131
E+L + ++ +++ VKR K ++SP
Sbjct: 384 SGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVSP 424
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 31.9 bits (72), Expect = 0.22
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIR---RLGI 85
+++HP + F + G S E++ VP+I PF DQ N + + ++GI
Sbjct: 337 VLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGI 389
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 31.5 bits (71), Expect = 0.24
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 35 IIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQ 73
+I+ HP+I F+ G ++ E++ + ++ IPF DQ
Sbjct: 323 LILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQ 361
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 31.0 bits (70), Expect = 0.40
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 80
V+I+ H F+T G SL E V +P++ P +Q YN K++
Sbjct: 356 VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLV 402
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 30.2 bits (68), Expect = 0.65
Identities = 14/47 (29%), Positives = 24/47 (51%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 80
V I++H + F+T G S+ E + VP++ P DQ N ++
Sbjct: 354 VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 30.5 bits (69), Expect = 0.77
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 13 LINLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGL-QSLQEA 57
++N +R +FFF+ F+ + ++H LF + G + ++L EA
Sbjct: 522 MVNFRRTAGRFFFYLLILFICTLAMSH----LFRSIGAVTKTLSEA 563
>gnl|CDD|233061 TIGR00629, uvde, UV damage endonuclease UvdE. All proteins in this
family for which functions are known are UV dimer
endonucleases that function in an alternative nucleotide
excision repair process. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 312
Score = 29.9 bits (67), Expect = 0.82
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 72 DQNYNVKIIRRLGIGSYMEFE---DIHTETLFENIQEILNNYDRYKKAVKRASDISKTQM 128
D Y+ +++ + + + + IH F N L R+ + KR S K ++
Sbjct: 134 DLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAFGNKDTTL---ARFHQNYKRLSQSIKERL 190
Query: 129 MSPRDTAVWWVEYLL 143
+ D W VE LL
Sbjct: 191 VLENDDVTWTVEDLL 205
>gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional.
Length = 305
Score = 29.6 bits (67), Expect = 0.98
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 97 ETLFENIQEILNNYDRYKKAVKRA 120
ETL + I+ YD YK A++ A
Sbjct: 18 ETLKDKIKGFFGLYDPYKPAIEEA 41
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 29.7 bits (66), Expect = 1.0
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII 80
V I++H +I F++ G S+ E++ VP++ P + +Q N ++
Sbjct: 346 VEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLL 392
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 29.5 bits (66), Expect = 1.4
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 34 VIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIG 86
V I++H ++ F+T G S+ E + F +I P +Q N +++ +G
Sbjct: 350 VKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLG 402
>gnl|CDD|190882 pfam04144, SCAMP, SCAMP family. In vertebrates, secretory carrier
membrane proteins (SCAMPs) 1-3 constitute a family of
putative membrane-trafficking proteins composed of
cytoplasmic N-terminal sequences with NPF repeats, four
central transmembrane regions (TMRs), and a cytoplasmic
tail. SCAMPs probably function in endocytosis by
recruiting EH-domain proteins to the N-terminal NPF
repeats but may have additional functions mediated by
their other sequences.
Length = 177
Score = 28.3 bits (64), Expect = 1.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 19 NFTKFFFFFFFFFLFVIIIA 38
NF FFF FF LF II A
Sbjct: 101 NFFWFFFIFFLHILFCIIQA 120
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 28.6 bits (65), Expect = 2.5
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 62 VPVIGIPF----FGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAV 117
+P I +P Q N + + G + D+ E L E + E+L++ +R +
Sbjct: 273 LPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMA 332
Query: 118 KRASDISK 125
+ A + K
Sbjct: 333 EAARALGK 340
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 28.1 bits (62), Expect = 3.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 144 KADGNVSHLQPEYWHLTWYEYFGLD 168
D +S L+ EY HL +YEY+ +D
Sbjct: 263 IIDAAISSLKLEYDHLCYYEYWDID 287
>gnl|CDD|217143 pfam02614, UxaC, Glucuronate isomerase. This is a family of
Glucuronate isomerases also known as D-glucuronate
isomerase, uronic isomerase, uronate isomerase, or
uronic acid isomerase, EC:5.3.1.12. This enzyme
catalyzes the reactions: D-glucuronate <=>
D-fructuronate and D-galacturonate <=> D-tagaturonate.
It is not however clear where the experimental evidence
for this functional assignment came from and thus this
family has no literature reference.
Length = 469
Score = 28.0 bits (63), Expect = 4.2
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 10/82 (12%)
Query: 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISK---TQMMSPRDTAVWWVEYLLKADGN 148
++I FENI EI D YK RA+ + + T S + + W E + K GN
Sbjct: 39 KEIAENKRFENITEIWLAGDHYKWRAMRANGVPEDLITGDASDYEKFLAWAETVPKTIGN 98
Query: 149 VSHLQPEY-W-HLTWYEYFGLD 168
P Y W HL YFG+
Sbjct: 99 -----PLYHWTHLELKRYFGIT 115
>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion
transport and metabolism].
Length = 653
Score = 27.6 bits (62), Expect = 5.0
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 23 FFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIP 68
F F F I P L GG +L E V +P + IP
Sbjct: 278 FLLVMFLMFQLTFTIGGPLSDLI--DGGFGALIEWVAQILPNLDIP 321
>gnl|CDD|107331 cd06336, PBP1_ABC_ligand_binding_like_3, Type I periplasmic
ligand-binding domain of uncharacterized ABC (ATPase
Binding Cassette)-type active transport systems that are
predicted to be involved in transport of amino acids,
peptides, or inorganic ions. This group includes the
type I periplasmic ligand-binding domain of
uncharacterized ABC (ATPase Binding Cassette)-type
active transport systems that are predicted to be
involved in transport of amino acids, peptides, or
inorganic ions. Members of this group are
sequence-similar to members of the family of ABC-type
hydrophobic amino acid transporters (HAAT), such as
leucine-isoleucine-valine-binding protein (LIVBP);
however their ligand specificity has not been determined
experimentally.
Length = 347
Score = 26.9 bits (60), Expect = 7.4
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 100 FENIQEILNNYDRYKK---AVKRASDISKTQMMSPRD-TAVWWVEYLLKA 145
+ Y+ Y A + K ++ P D WV A
Sbjct: 112 NPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYKAA 161
>gnl|CDD|132263 TIGR03219, salicylate_mono, salicylate 1-monooxygenase. Members of
this protein family are salicylate 1-monooxygenase, also
called salicylate hydroxylase. This enzyme converts
salicylate to catechol, which is a common intermediate
in the degradation of a number of aromatic compounds
(phenol, toluene, benzoate, etc.). The gene for this
protein may occur in catechol degradation genes, such as
those of the meta-cleavage pathway.
Length = 414
Score = 27.1 bits (60), Expect = 7.4
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 95 HTETLFENIQEILNNYDRYKKAVKRASDISKT-----QMMSPRDTAVWWVEYLLKA 145
TE ++ +L YD ++ RA + +T ++ RD AV E LL A
Sbjct: 336 DTELEAGDLPALLEAYDDVRR--PRACRVQRTSREAGELYELRDPAVGADEELLGA 389
>gnl|CDD|216975 pfam02326, YMF19, Plant ATP synthase F0. This family corresponds
to subunit 8 (YMF19) of the F0 complex of plant and
algae mitochondrial F-ATPases (EC:3.6.1.34).
Length = 84
Score = 25.4 bits (56), Expect = 7.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 20 FTKFFFFFFFFFLFVIIIAH 39
FT+FF+ FFF F I + +
Sbjct: 9 FTQFFWLCLFFFTFYIFLLN 28
>gnl|CDD|233736 TIGR02122, TRAP_TAXI, TRAP transporter solute receptor, TAXI
family. This family is one of at least three major
families of extracytoplasmic solute receptor (ESR) for
TRAP (Tripartite ATP-independent Periplasmic
Transporter) transporters. The others are the DctP
(TIGR00787) and SmoM (pfam03480) families. These
transporters are secondary (driven by an ion gradient)
but composed of three polypeptides, although in some
species the 4-TM and 12-TM integral membrane proteins
are fused. Substrates for this transporter family are
not fully characterized but, besides C4 dicarboxylates,
may include mannitol and other compounds [Transport and
binding proteins, Unknown substrate].
Length = 320
Score = 26.9 bits (60), Expect = 8.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 92 EDIHTETLFENIQEILNNYDRYKKAVKRASDISK 125
D+ + +++ + I N D K A A DI+
Sbjct: 264 SDVPEDLVYQITKAIFENLDELKDAHPAAQDIAL 297
>gnl|CDD|220439 pfam09847, DUF2074, Predicted permease (DUF2074). This domain,
found in various archaeal hypothetical proteins, has no
known function.
Length = 449
Score = 27.0 bits (60), Expect = 8.4
Identities = 16/57 (28%), Positives = 23/57 (40%)
Query: 15 NLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG 71
NL RNF + F F F +++II + NI + + F I PF
Sbjct: 146 NLLRNFGRLLFLVFIFGIYLIIQYNANIVYEMIPPIPEYYDYIFPFYALTIYQPFKS 202
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2.
FadE2-like Acyl-CoA dehydrogenase (ACAD). Acyl-CoA
dehydrogenases (ACAD) catalyze the alpha,beta
dehydrogenation of the corresponding trans-enoyl-CoA by
FAD, which becomes reduced. The reduced form of ACAD is
reoxidized in the oxidative half-reaction by
electron-transferring flavoprotein (ETF), from which the
electrons are transferred to the mitochondrial
respiratory chain coupled with ATP synthesis. The ACAD
family includes the eukaryotic beta-oxidation, as well
as amino acid catabolism enzymes. These enzymes share
high sequence similarity, but differ in their substrate
specificities. ACAD's are generally homotetramers and
have an active site glutamate at a conserved position.
Length = 394
Score = 26.6 bits (59), Expect = 9.2
Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 38 AHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTE 97
P K+ I G H + +I +P V IIR L + Y + H E
Sbjct: 168 GDPRCKIAIVMGRTDPDGAPRHRQQSMILVPM---DTPGVTIIRPLSVFGYDDAPHGHAE 224
Query: 98 TLFENI 103
F+N+
Sbjct: 225 ITFDNV 230
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.144 0.450
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,042,429
Number of extensions: 1083896
Number of successful extensions: 3933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3692
Number of HSP's successfully gapped: 146
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (25.7 bits)