RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10494
(203 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 118 bits (299), Expect = 2e-34
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95
++ HP + FIT GG + EA++ +P++GIP F DQ N+ ++ G ++F +
Sbjct: 81 LLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKARGAAVRVDFNTMS 140
Query: 96 TETLFENIQEILNNYDRYKKAVKRASDI 123
+ L ++ ++N+ YK+ V + S I
Sbjct: 141 STDLLNALKRVIND-PSYKENVMKLSRI 167
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 88.3 bits (219), Expect = 7e-21
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIH 95
I+ LF+T G QE + P+I +P DQ N +++ LG+ + E+
Sbjct: 296 ILRQA--DLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEAT 353
Query: 96 TETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKA 145
+ L E ++++ + ++R + + R A +E L A
Sbjct: 354 ADLLRETALALVDD-PEVARRLRRIQAEMAQEGGTRR--AADLIEAELPA 400
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 86.7 bits (215), Expect = 2e-20
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
FIT G+ S EA+ VP++ +P +Q N + I LG+G ++ + + E L
Sbjct: 320 TKASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKL 379
Query: 100 FENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADG 147
E + + ++ + + + A +E +L G
Sbjct: 380 REAVLAVASD-PGVAERLAAVRQEIREA--GGARAAADILEGILAEAG 424
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 72.8 bits (179), Expect = 2e-15
Identities = 20/104 (19%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
+ +T GG+ +L EA+++ P++ +P D + + +LG+G+ + E +TL
Sbjct: 312 EQATVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTL 371
Query: 100 FENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143
+ + + V+ + A VE L
Sbjct: 372 LAAVGAVAAD-PALLARVEAMRGHVRR--AGGAARAADAVEAYL 412
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 70.1 bits (172), Expect = 1e-14
Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 4/105 (3%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFG-DQNYNVKIIRRLGIGSYMEFEDIHTET 98
+ + +T G ++ EA VP++ +P F + + + + LG+GS + + + +
Sbjct: 296 AHARACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPAS 355
Query: 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLL 143
+ E ++ + + ++ V+R + A VE L
Sbjct: 356 IREAVERLAAD-SAVRERVRRMQRDILS--SGGPARAADEVEAYL 397
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 63.9 bits (156), Expect = 2e-12
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
L + GG + A+ VP + P+ GD N + + + G G ++ ++I +++
Sbjct: 311 LVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAA 370
Query: 104 QEILNNYDRYKKAVKRASD 122
+ +L + Y+ + +
Sbjct: 371 KRLLAE-ESYRAGARAVAA 388
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 62.1 bits (151), Expect = 8e-12
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 7/106 (6%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
P + GG S A VP + +P D + + G G + ++ + L
Sbjct: 334 PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQL 393
Query: 100 FENIQEILNNYDRYKKAVKRASDISKTQM--MSPRDTAVWWVEYLL 143
E+++ +L++ ++ R D M V E L
Sbjct: 394 RESVKRVLDD-PAHRAGAARMRD----DMLAEPSPAEVVGICEELA 434
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 61.8 bits (150), Expect = 1e-11
Identities = 21/120 (17%), Positives = 38/120 (31%), Gaps = 4/120 (3%)
Query: 39 HPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98
+ I GG + A P I +P DQ Y + LG+G + ++
Sbjct: 299 FGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDS 358
Query: 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYWH 158
L + L + +T A ++ + + VS L+ + H
Sbjct: 359 LSAALATALT--PETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPTVSALEHHHHH 414
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 60.3 bits (146), Expect = 4e-11
Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 4/119 (3%)
Query: 39 HPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTET 98
+ + GG + P + +P DQ Y + LG+G + E+
Sbjct: 282 FGRVAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVES 341
Query: 99 LFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYLLKADGNVSHLQPEYW 157
L + L + + + A +E + + +V +
Sbjct: 342 LSAALATALT--PGIRARAAAVAG--TIRTDGTTVAAKLLLEAISRQRSSVPAAKLAAA 396
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 59.0 bits (143), Expect = 9e-11
Identities = 12/79 (15%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
+ + GG + + VP + +P + + +++ G G + +E E++
Sbjct: 303 VVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESVLAAC 362
Query: 104 QEILNNYDRYKKAVKRASD 122
I ++ Y +R +
Sbjct: 363 ARIRDD-SSYVGNARRLAA 380
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 58.7 bits (142), Expect = 1e-10
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETLFENI 103
L + G S + VP + IP + + G + + TE + ++
Sbjct: 282 LLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPGEDSTEAIADSC 341
Query: 104 QEILNNYDRYKKAVKRASD 122
QE+ D Y + + S
Sbjct: 342 QELQAK-DTYARRAQDLSR 359
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 58.7 bits (142), Expect = 1e-10
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 40 PNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHTETL 99
+ I G + A VP + IP DQ Y + LGIG + E+L
Sbjct: 301 RRVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESL 360
Query: 100 FENIQEILNNYDRYKKAVKRASDISKT-----------QMMSPRDTAVWWVE 140
+ +L + + + + T + AV +E
Sbjct: 361 SAALTTVLA--PETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPALE 410
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 54.8 bits (132), Expect = 3e-09
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRRLGIGSYMEFEDIHT--ETLFE 101
L I GG + A +P + +P + DQ + + G G + E + E +
Sbjct: 289 LVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQAQSDHEQFTD 348
Query: 102 NIQEILNNYDRYKKAVKRASD 122
+I +L + + A + SD
Sbjct: 349 SIATVLGD-TGFAAAAIKLSD 368
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 48.3 bits (115), Expect = 5e-07
Identities = 17/101 (16%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 44 LFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVK--IIRRLGIGSYMEFEDIHTETLFE 101
+ GG ++ A+ +P + P DQ + + R GIG + + + L
Sbjct: 302 AVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVSTSDKVDADLL-- 359
Query: 102 NIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVWWVEYL 142
+ ++ + + + A + + + +P +T VE +
Sbjct: 360 --RRLIGD-ESLRTAAREVRE-EMVALPTPAETVRRIVERI 396
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 42.6 bits (101), Expect = 4e-05
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFED 93
++AH + F+T G SL E+V VP+I PFFGDQ N +++ L IG + E
Sbjct: 338 VLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIG--VRIEG 394
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 42.3 bits (100), Expect = 4e-05
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 9/94 (9%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-----RRLGIGSYME 90
++ HP+I F+T G S E++ VP++ PFF DQ + + I + I + ++
Sbjct: 366 VLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVK 425
Query: 91 FEDIHT--ETLF--ENIQEILNNYDRYKKAVKRA 120
E++ + + +++ KK +
Sbjct: 426 REELAKLINEVIAGDKGKKMKQKAMELKKKAEEN 459
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 42.2 bits (100), Expect = 4e-05
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIGSYMEFED 93
I+ H ++ +F+T G S+ E + VP+I PFFGDQ N + L IG + ++
Sbjct: 340 ILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG--VGVDN 396
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 41.1 bits (97), Expect = 1e-04
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKII-RRLGIG 86
++AHP+ F+T G S E+V +P+I P + +Q N ++ +
Sbjct: 352 VLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAA 403
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 39.9 bits (94), Expect = 3e-04
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 36 IIAHPNIKLFITQGGLQSLQEAVHFEVPVIGIPFFGDQNYNVKIIRR-LGIG 86
++AH I F++ G S+ E++ F VP++ P + +Q N + + G+G
Sbjct: 345 VLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVG 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.002
Identities = 23/119 (19%), Positives = 38/119 (31%), Gaps = 42/119 (35%)
Query: 87 SYMEFEDIHT---------ETLFENIQEILNNYDRYKKAVKRASDISKTQMMSPRDTAVW 137
Y+E DIH +T +E++ NY A ++K ++A
Sbjct: 94 CYLEGNDIHALAAKLLQENDTTLVKTKELIKNY--I-----TARIMAKRPFDKKSNSA-- 144
Query: 138 WVEYLLKA--DGNVSHLQPEYWHLTWYEYFG----LDVYLVIFSPVILALYGLYRLVLT 190
L +A +GN FG D Y + LY Y +++
Sbjct: 145 ----LFRAVGEGNAQ----------LVAIFGGQGNTDDYF----EELRDLYQTYHVLVG 185
>2q01_A Uronate isomerase; structural genomics, protein structure
initiative NEW YORK SGX research center for structural
genomics, nysgx; 2.34A {Caulobacter crescentus}
Length = 497
Score = 30.1 bits (67), Expect = 0.52
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 15/83 (18%)
Query: 100 FENIQEILNNYDRYKKAVKRASDISKTQMM----------SPRDTAVWWVEYLLKADGNV 149
F++ ++L D Y + + +S + PR+ + + G
Sbjct: 55 FQDATDLLLAPDHYLFRMLYSQGVSLDALKVRSKAGVPDTDPREAWRVFASHFYLFRGTP 114
Query: 150 SHLQPEYW-HLTWYEYFGLDVYL 171
S W + + + FG +L
Sbjct: 115 SW----VWLNHVFSQVFGFTEFL 133
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 27.9 bits (61), Expect = 1.3
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 158 HLTWYEYFGLDVYLVIFSPVILALYGLYRLVLTIN 192
+ +W E + V+++ F P+ L+ G Y N
Sbjct: 67 YTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 101
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 27.9 bits (61), Expect = 1.3
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 152 LQPEYWHLTWYEYFGLDVYLVIFSPVILALYGLYR 186
++ E +W E + +++ F PV+ G YR
Sbjct: 55 VKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYR 89
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural
genomic center for structural genomics, JCSG; 2.25A
{Bacteroides ovatus}
Length = 520
Score = 26.8 bits (58), Expect = 5.4
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 105 EILNNYDRYKKAVKRASDISKTQMMSPRDTAVWW 138
E N + + AV + SKT+ T VWW
Sbjct: 484 EYRENRESVEAAVATLTQESKTKRGDTMATHVWW 517
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 1/88 (1%)
Query: 8 HNNNGLINLKRNFTKFFFFFFFFFLFVIIIAHPNIKLFITQGGLQSLQEAVHFEVPVIGI 67
+N L L++ F I I + EA+ + I
Sbjct: 192 SSNPNLKKLQKFAKLHNNIRLFIDHENIAKLMNESNKLIISASS-LVNEALLLKANFKAI 250
Query: 68 PFFGDQNYNVKIIRRLGIGSYMEFEDIH 95
+ +Q + + G ++ + H
Sbjct: 251 CYVKNQESTATWLAKKGYEVEYKYLEHH 278
>1lf6_A Glucoamylase; (alpha/alpha) barrel, 6 alpha-helical hairpin
torroid, super beta sandwich, carbohydrase family GH15;
2.10A {Thermoanaerobacteriumthermosaccharolyticum} SCOP:
a.102.1.5 b.30.5.5 PDB: 1lf9_A*
Length = 684
Score = 26.6 bits (58), Expect = 6.5
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 132 RDTAVWWVEYLLKADGNVSHLQPEYWHLTWYEYFG--LDVYLVIFSPVILALYGLYR 186
D+A ++YL K + + W + G LD + I+ Y L R
Sbjct: 358 VDSANRSLDYLAKVVKDNGMIPQNTWISGKPYWTGIQLDEQ----ADPIILSYRLKR 410
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional
regulator LYSR struc genomics, PSI-2, protein structure
initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Length = 238
Score = 26.4 bits (59), Expect = 6.8
Identities = 3/21 (14%), Positives = 12/21 (57%)
Query: 38 AHPNIKLFITQGGLQSLQEAV 58
+P+I L + + + +++ +
Sbjct: 55 RYPSITLQLQEMSQEKIEDML 75
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase;
1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A*
2uzj_A* 2jtc_A
Length = 261
Score = 26.2 bits (57), Expect = 8.2
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 63 PVIGIPFFGDQNYNV-KIIRRLGIGSYMEFEDIHTETLFENIQEILNNYDRYKKAVK 118
P Q + +++ +GI M++ +Q L Y ++V
Sbjct: 102 PTYSGRESNVQKMAISELMADVGISVDMDYGPSSGSAGSSRVQRALKENFGYNQSVH 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.144 0.450
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,330,677
Number of extensions: 197915
Number of successful extensions: 835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 45
Length of query: 203
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 114
Effective length of database: 4,216,824
Effective search space: 480717936
Effective search space used: 480717936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.1 bits)