BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10504
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 225 bits (573), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/167 (64%), Positives = 131/167 (78%), Gaps = 1/167 (0%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+ ALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQFASMRDLYIKNGQGF++VYSL N +FQDIK M++ I RVK E+VP++LV NK+DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268
S + + G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN+
Sbjct: 121 ESEREVSSSE-GRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY 166
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 192 bits (487), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 121/168 (72%), Gaps = 2/168 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+MRE+ ALTVQFV G F+EKYDPTIED YRK++EVD C+LEILDTA
Sbjct: 2 SMREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTA 61
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
GTEQF +MRDLY+KNGQGF +VYS+T TF D++ ++E I RVK ++ VP++LV NK D
Sbjct: 62 GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 221 LASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
L +R V GQ LA+ W C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 122 L-EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQIN 168
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 191 bits (485), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/167 (55%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+ ALTVQFV G F+EKYDPTIED YRK++EVD C+LEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQF +MRDLY+KNGQGF +VYS+T TF D++ ++E I RVK ++ VP++LV NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
+R V GQ LA+ W C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQIN 166
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/167 (56%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+ ALTVQFV G F+EKYDPTIED YRK++EVD C+LEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQF +MRDLY+KNGQGF +VYS+T TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
+R V GQ LA+ W C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 187 bits (476), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 92/167 (55%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+ ALTVQFV G F+++YDPTIED YRK++EVD C+LEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQF +MRDLY+KNGQGF +VYS+T TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
+R V GQ LA+ W C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI +E I RVK SE VP++LV NK DL S R V T Q LA+
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
S+G PFIE SAK + V++ F +VRE+ + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 160 bits (405), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI +E I RVK SE VP++LV NK DL S R V T Q LA+
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
S+G PFIE SAK + V++ F +VRE+ + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI +E I RVK SE VP++LV NK DL S R V T Q LA+
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
S+G PFIE SAK + V++ F +VRE+ + EK
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 160 bits (405), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 75/154 (48%), Positives = 109/154 (70%), Gaps = 2/154 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 36 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI +E I RVK SE VP++LV NK DL S R V T Q LA+
Sbjct: 96 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLAR 153
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
S+G PFIE SAK + V++ F +VRE+ + EK
Sbjct: 154 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 187
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 73/149 (48%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+EKYDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 159 bits (403), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 113/171 (66%), Gaps = 8/171 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM------NFNPEKDNASFCWCSSC 283
S+G P+IE SAK + V + F +VRE+ NP ++ C C
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIRQHKLRKLNPPDESGPGCMSCKC 186
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 74/153 (48%), Positives = 108/153 (70%), Gaps = 2/153 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 19 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI +E I RVK SE VP++LV NK DL S R V T Q LA+
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS--RTVDTKQAQDLAR 136
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
S+G PFIE SAK + V++ F +VRE+ + E
Sbjct: 137 SYGIPFIETSAKTRQGVDDAFYTLVREIRKHKE 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 72/149 (48%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F++KYDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 157 bits (396), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 73/166 (43%), Positives = 111/166 (66%), Gaps = 2/166 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M E+ ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA
Sbjct: 7 SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 66
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E++++MRD Y++ G+GF+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 67 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 126
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
LA+ R V + Q LA+S+G P+IE SAK + V + F +VRE+
Sbjct: 127 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 156 bits (395), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M E+ ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA
Sbjct: 5 SMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E++++MRD Y++ G+GF+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
LA+ R V + Q LA+S+G P+IE SAK + V + F +VRE+
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M E+ ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA
Sbjct: 5 SMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E++++MRD Y++ G+GF+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65 GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
LA+ R V + Q LA+S+G P+IE SAK + V + F +VRE+
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 156 bits (395), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 156 bits (394), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 111/167 (66%), Gaps = 2/167 (1%)
Query: 101 TMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M E+ ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA
Sbjct: 5 SMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E++++MRD Y++ G+GF+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK D
Sbjct: 65 GLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 124
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
LA+ R V + Q LA+S+G P+IE SAK + V + F +VRE+
Sbjct: 125 LAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 169
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/147 (48%), Positives = 106/147 (72%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
S+G P+IE SAK + V + F +VRE
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVRE 162
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV N+ DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 155 bits (393), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 155 bits (392), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDP+IED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDT G E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 107/148 (72%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDP+IED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 24 ALTIQLIQNHFVDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 84 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G P+IE SAK + V + F +VRE+
Sbjct: 142 SYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDT G E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 155 bits (391), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F++++DPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIE+ YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTA E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 154 bits (390), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 106/149 (71%), Gaps = 2/149 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E+ ++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++ DPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 152 bits (384), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D +L+ILDTAG E++++MRD Y++ G+G
Sbjct: 18 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DLA+ R V + Q LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVESRQAQDLAR 135
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G P+IE SAK + V + F +VRE+
Sbjct: 136 SYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 151 bits (381), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 103/148 (69%), Gaps = 2/148 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG E++++MRD Y++ G+G
Sbjct: 36 ALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+++ N +F DI +E I RVK S+ VP++LV NK DL + R V T LA+
Sbjct: 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAK 153
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S+G PFIE SAK + V + F +VRE+
Sbjct: 154 SYGIPFIETSAKTRQGVEDAFYTLVREI 181
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 103/147 (70%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF F+++YDPTIED YRK E+D +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33 ALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++VYS+T+ +F+ + + +LI RVK E P++LVANK+DL H R+V G+ +A
Sbjct: 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
+ P+IE SAK+ NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 140 bits (353), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 100/146 (68%), Gaps = 1/146 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+ YDPTIED Y K+ +D L+ILDTAG E+F +MR+ Y++ G+G
Sbjct: 20 ALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEG 79
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++V+S+T+ +F++I + + I RVK + P++L+ NK DL HQR+V +GQ LA+
Sbjct: 80 FLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL-DHQRQVTQEEGQQLAR 138
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVR 264
++EASAK + NV++ F E+VR
Sbjct: 139 QLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF F++ YDPTIED Y K E+D +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33 ALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++VYS+T+ +F+ + + +LI RVK E P++LVANK+DL H R+V G+ +A
Sbjct: 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
+ P+IE SAK+ NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 100/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF F+ YDPTIED Y K E+D +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 28 ALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 87
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++VYS+T+ +F+ + + +LI RVK E P++LVANK+DL H R+V G+ +A
Sbjct: 88 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 146
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
+ P+IE SAK+ NV++ F ++VR
Sbjct: 147 KYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/147 (44%), Positives = 101/147 (68%), Gaps = 2/147 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF F+ +YDPTIED Y K E+D +L++LDTAG E+F++MR+ Y++ G G
Sbjct: 33 ALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++VYS+T+ +F+ + + +LI RVK E P++LVANK+DL H R+V G+ +A
Sbjct: 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMAT 151
Query: 239 SWGCPFIEASAKNKT-NVNEMFAEIVR 264
+ P+IE SAK+ NV++ F ++VR
Sbjct: 152 KYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 22 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLASHQREVPTLDGQALA 237
F++V+S+T H +F + +E I RVK E ++P+L+V NK DL +R+VP + ++ A
Sbjct: 82 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-EERRQVPVEEARSKA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
+ WG ++E SAK + NV+++F +++RE+ +N
Sbjct: 141 EEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 177
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/157 (40%), Positives = 106/157 (67%), Gaps = 2/157 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 18 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLASHQREVPTLDGQALA 237
F++V+S+T H +F + +E I RVK E ++P+L+V NK DL +R+VP + ++ A
Sbjct: 78 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDL-EERRQVPVEEARSKA 136
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
+ WG ++E SAK + NV+++F +++RE+ +N
Sbjct: 137 EEWGVQYVETSAKTRANVDKVFFDLMREIRTKKMSEN 173
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 101/157 (64%), Gaps = 8/157 (5%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+L ++FV G F + Y PTIED YR+ I DK+ C L+I DT G+ QF +M+ L I G
Sbjct: 23 SLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHA 82
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQREVPTLDGQALA 237
F++V+S+T+ + +++ + +LI ++KGS E +P++LV NK D QREV T + QA+A
Sbjct: 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD--ETQREVDTREAQAVA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIV-----REMNFN 269
Q W C F+E SAK NV E+F E++ R M+ N
Sbjct: 141 QEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLN 177
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 134 bits (337), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 65/146 (44%), Positives = 96/146 (65%), Gaps = 2/146 (1%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+L ++FV G F E Y PT+ED YR+ I DK+ C L+I DT G+ QF +M+ L I G
Sbjct: 18 SLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHA 77
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQREVPTLDGQALA 237
F++VYS+T+ + +++K + E I +KG E +PI+LV NK D S REV + + +ALA
Sbjct: 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD-ESPSREVQSSEAEALA 136
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIV 263
++W C F+E SAK NV E+F E++
Sbjct: 137 RTWKCAFMETSAKLNHNVKELFQELL 162
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 132 bits (332), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 64/146 (43%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+ YDPTIED Y K VD P L+ILDTAG E+F +MR+ Y++ G G
Sbjct: 24 ALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F++V+++ + +F ++ ++ I RVK + P++LV NK DL S QR+VP + A
Sbjct: 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLES-QRQVPRSEASAFGA 142
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVR 264
S + EASAK + NV+E F ++VR
Sbjct: 143 SHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 33 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+S+T +F +E I RVK E VP LLV NK DL +R+V + + A+
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 151
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 152 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 21 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+S+T +F +E I RVK E VP LLV NK DL +R+V + + A+
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 140 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 21 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEG 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+S+T +F +E I RVK E VP LLV NK DL +R+V + + A+
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 140 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 175
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 99/156 (63%), Gaps = 1/156 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 29 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+S+T +F +E I RVK E VP LLV NK DL +R+V + + A+
Sbjct: 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAE 147
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 148 QWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 183
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 125 bits (315), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/148 (41%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG E +A++RD Y ++G+G
Sbjct: 19 ALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
F+ V+S+T +F +E I RVK E VP LLV NK DL +R+V + + A
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL-EDKRQVSVEEAKNRAD 137
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
W ++E SAK + NV+++F +++RE+
Sbjct: 138 QWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 95/148 (64%), Gaps = 1/148 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+L QFV G F E YDPT+E+ Y K + + K L ++DTAG ++++ + +I G
Sbjct: 39 SLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG 98
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+V+VYS+T+ H+FQ I+ + + + G RVP++LV NK DL S +REV ++G+ LA+
Sbjct: 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADL-SPEREVQAVEGKKLAE 157
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
SWG F+E+SA+ +F ++++E+
Sbjct: 158 SWGATFMESSARENQLTQGIFTKVIQEI 185
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 93/150 (62%), Gaps = 3/150 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
AL V+F++ F+ +YDPT+E YR + +D +EILDTAG E R+ +++ G+G
Sbjct: 43 ALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
FV+VY +T+ +F+++ +K ++ +K + V ++LV NK DL H R+V T +G+ LA
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL-DHSRQVSTEEGEKLAT 160
Query: 239 SWGCPFIEASA-KNKTNVNEMFAEIVREMN 267
C F E SA + N+ E+F E+ RE+
Sbjct: 161 ELACAFYECSACTGEGNITEIFYELCREVR 190
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+LT+QFV G F++ YDPTIE+ + K I V+ L+++DTAG ++++ Y + G
Sbjct: 16 SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 75
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+++VYS+T+ +F+ IK + + + G ++PI+LV NK DL +R + +G+ALA+
Sbjct: 76 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 134
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
SW F+E+SAK ++F I+ E
Sbjct: 135 SWNAAFLESSAKENQTAVDVFRRIILE 161
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+LT+QFV G F++ YDPTIE+ + K I V+ L+++DTAG ++++ Y + G
Sbjct: 21 SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+++VYS+T+ +F+ IK + + + G ++PI+LV NK DL +R + +G+ALA+
Sbjct: 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
SW F+E+SAK ++F I+ E
Sbjct: 140 SWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 103 bits (258), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 92/147 (62%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+LT+QFV G F++ YDPTIE+ + K I V+ L+++DTAG ++++ Y + G
Sbjct: 21 SLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 80
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+++VYS+T+ +F+ IK + + + G ++PI+LV NK DL +R + +G+ALA+
Sbjct: 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 139
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
SW F+E+SAK ++F I+ E
Sbjct: 140 SWNAAFLESSAKENQTAVDVFRRIILE 166
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 100 bits (249), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 91/147 (61%), Gaps = 1/147 (0%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+LT+QFV G F++ DPTIE+ + K I V+ L+++DTAG ++++ Y + G
Sbjct: 19 SLTIQFVEGQFVDSADPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDING 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+++VYS+T+ +F+ IK + + + G ++PI+LV NK DL +R + +G+ALA+
Sbjct: 79 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL-HMERVISYEEGKALAE 137
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVRE 265
SW F+E+SAK ++F I+ E
Sbjct: 138 SWNAAFLESSAKENQTAVDVFRRIILE 164
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 15 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 74
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 75 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 132
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
S G PF+E SAKN TNV + F AEI + M
Sbjct: 133 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 22 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 82 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 139
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
S G PF+E SAKN TNV + F AEI + M
Sbjct: 140 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 94.7 bits (234), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 32 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 92 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 149
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
S G PF+E SAKN TNV + F AEI + M
Sbjct: 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/152 (38%), Positives = 83/152 (54%), Gaps = 7/152 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 22 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 81
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 82 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 139
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREM 266
S G PF+E SAKN TNV + F AEI + M
Sbjct: 140 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 32 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 91
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 92 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 149
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
S G PF+E SAKN TNV + F AEI + M
Sbjct: 150 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 182
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 41 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 100
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 101 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 158
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
S G PF+E SAKN TNV + F AEI + M
Sbjct: 159 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 191
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 83/153 (54%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 25 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ ++ ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 85 IIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTT-KKVVDNTTAKEFAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
S G PF+E SAKN TNV + F AEI + M
Sbjct: 143 SLGIPFLETSAKNATNVEQAFMTMAAEIKKRMG 175
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 83/154 (53%), Gaps = 7/154 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 25 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ ++ ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 85 IIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTT-KKVVDNTTAKEFAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMNF 268
S G PF+E SAKN TNV + F AEI + M
Sbjct: 143 SLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGL 176
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L V+FV F + TI DF K ++++ L+I DTAG E+F ++ Y + G
Sbjct: 19 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ TF +IKQ + + ++ +LLV NK D+ + R V G+ALA+
Sbjct: 79 IILVYDITDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
G PFIE+SAKN NVNE+F A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 49 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 108
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV NK DL + ++ V + A
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT-KKVVDYTTAKEFAD 166
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S G PF+E SAKN TNV + F E+
Sbjct: 167 SLGIPFLETSAKNATNVEQSFXTXAAEI 194
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L V+FV F + TI DF K ++++ L++ DTAG E+F ++ Y + G
Sbjct: 36 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ TF +IKQ + + ++ +LLV NK D+ + R V G+ALA+
Sbjct: 96 IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 152
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
G PFIE+SAKN NVNE+F A++++E
Sbjct: 153 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 182
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 87/150 (58%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L V+FV F + TI DF K ++++ L++ DTAG E+F ++ Y + G
Sbjct: 23 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 82
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ TF +IKQ + + ++ +LLV NK D+ + R V G+ALA+
Sbjct: 83 IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDMET--RVVTADQGEALAK 139
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
G PFIE+SAKN NVNE+F A++++E
Sbjct: 140 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 169
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L V+FV F + TI DF K ++++ L+I DTAG E+F ++ Y + G
Sbjct: 19 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ TF +IKQ + + ++ +LLV NK D + R V G+ALA+
Sbjct: 79 IILVYDITDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDXET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
G PFIE+SAKN NVNE+F A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 90.9 bits (224), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 55/150 (36%), Positives = 86/150 (57%), Gaps = 7/150 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L V+FV F + TI DF K ++++ L++ DTAG E+F ++ Y + G
Sbjct: 19 LLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXG 78
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ TF +IKQ + + ++ +LLV NK D + R V G+ALA+
Sbjct: 79 IILVYDVTDERTFTNIKQWFKTVNE-HANDEAQLLLVGNKSDXET--RVVTADQGEALAK 135
Query: 239 SWGCPFIEASAKNKTNVNEMF---AEIVRE 265
G PFIE+SAKN NVNE+F A++++E
Sbjct: 136 ELGIPFIESSAKNDDNVNEIFFTLAKLIQE 165
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 90.5 bits (223), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 58/153 (37%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 24 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
+VVY +T+ +F ++KQ + I R SE V LLV K DL + ++ V + A
Sbjct: 84 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGIKCDLTT-KKVVDYTTAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMF----AEIVREMN 267
S G PF+E SAKN TNV + F AEI + M
Sbjct: 142 SLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG 174
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 81/148 (54%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + + Y TI DF + I ++ L+I DTAG E+F ++ Y + G
Sbjct: 25 LLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHG 84
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ +F ++KQ + I R E V LLV NK DL S +R V + +G+ LA
Sbjct: 85 IIIVYDVTDRDSFDNVKQWIQEIDRY-AMENVNKLLVGNKCDLVS-KRVVTSDEGRELAD 142
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
S G FIE SAKN NV + F + E+
Sbjct: 143 SHGIKFIETSAKNAYNVEQAFHTMAGEI 170
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 120 LTVQFVSGCFME-KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
L V+F G F+ + T+ DF K ++VD L++ DTAG E+F S+ Y ++
Sbjct: 26 LLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+++Y +TN +F +I+ I V ++L+ NK+D ++H+R V DG+ LA
Sbjct: 86 ALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVD-SAHERVVKREDGEKLA 143
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
+ +G PF+E SAK NV+ F I +E+
Sbjct: 144 KEYGLPFMETSAKTGLNVDLAFTAIAKELK 173
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 82/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI+ F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 20 SLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
+VVY +TN TF K +KEL + + S + I L NK DLAS +R V + QA
Sbjct: 80 AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 136
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
A F+E SAK NVNE+F I +++
Sbjct: 137 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 18 SLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 77
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
+VVY +TN TF K +KEL + + S + I L NK DLAS +R V + QA
Sbjct: 78 AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 134
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
A F+E SAK NVNE+F I +++
Sbjct: 135 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 86/150 (57%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
ALTV+F++ F+ +YDP +ED Y E VD P L ++DTA + + + Y+
Sbjct: 36 ALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94
Query: 179 FVVVYSLTNHHTFQDIKQMKELIT-RVKGSER-VPILLVANKLDLASHQREVPTLDGQAL 236
F+VVYS+ + +F EL+ K ++R +P LL+ NKLD+A + R+V +G AL
Sbjct: 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY-RQVTKAEGVAL 153
Query: 237 AQSWGCPFIEASA-KNKTNVNEMFAEIVRE 265
A +GC F E SA + +V +F E VRE
Sbjct: 154 AGRFGCLFFEVSACLDFEHVQHVFHEAVRE 183
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/150 (37%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 20 SLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
+VVY +TN TF K +KEL + + S + I L NK DLAS +R V + QA
Sbjct: 80 AAIVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLAS-KRAVEFQEAQAY 136
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
A F+E SAK NVNE+F I +++
Sbjct: 137 ADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 83/150 (55%), Gaps = 4/150 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +F F E T+ DF K +E+ L+I DTAG E+F S+ Y ++ +
Sbjct: 41 SLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 100
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
G ++VY +T TF D+ + ++I + SE +LLV NKLD + RE+ G+ A
Sbjct: 101 GIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETD-REITRQQGEKFA 158
Query: 238 QS-WGCPFIEASAKNKTNVNEMFAEIVREM 266
Q G F EASAK+ NV+E+F ++V ++
Sbjct: 159 QQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/150 (34%), Positives = 84/150 (56%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV F+E + TI F+ + + V+ A EI DTAG E++ S+ +Y +
Sbjct: 27 SLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAA 86
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
++V+ +TN +F+ K+ ++EL + +G+ + + L NK DL R+V D Q
Sbjct: 87 AAIIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLLDA-RKVTAEDAQTY 143
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
AQ G F+E SAK TNV E+F EI R +
Sbjct: 144 AQENGLFFMETSAKTATNVKEIFYEIARRL 173
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/145 (35%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
++ ++FVS F E +PTI F + + +++ EI DTAG E+FAS+ Y +N Q
Sbjct: 18 SIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQ 77
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASH--QREVPTLDGQ 234
+VVY +T +F + +KEL + S+ + I LV NK+D +R+V +G+
Sbjct: 78 AALVVYDVTKPQSFIKARHWVKEL--HEQASKDIIIALVGNKIDXLQEGGERKVAREEGE 135
Query: 235 ALAQSWGCPFIEASAKNKTNVNEMF 259
LA+ G F E SAK NVN++F
Sbjct: 136 KLAEEKGLLFFETSAKTGENVNDVF 160
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 5/150 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 23 SLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 82
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
+VVY +TN TF K +KEL + + S + I L NK DLA ++R V + QA
Sbjct: 83 AAIVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKADLA-NKRMVEYEEAQAY 139
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
A F+E SAK NVN++F I +++
Sbjct: 140 ADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 81.3 bits (199), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 89/184 (48%), Gaps = 7/184 (3%)
Query: 90 LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
L+PR S + + + + + ++ F E T+ DF K + VD
Sbjct: 14 LVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD 73
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208
VL++ DTAG E+F S+ Y + G +++Y +T +F +I++ ++I E
Sbjct: 74 GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHE 132
Query: 209 RVPILLVANKLDL-----ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
VPI+LV NK D+ Q+ VP G+ LA ++G F E SAK+ +N+ E +
Sbjct: 133 TVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLA 192
Query: 264 REMN 267
RE+
Sbjct: 193 REVK 196
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 80.5 bits (197), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 56 EFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 115
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I+LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 116 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 172
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 173 AFQTILTEI 181
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 44 EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 103
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I+LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 104 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 160
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 161 AFQTILTEI 169
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
+R+F +L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E+F S+ YI++ VVVY +TN ++FQ + + + +GS+ V I+LV NK D
Sbjct: 64 GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 122
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
LA +R+V +G+ A+ FIE SAK NV ++F +
Sbjct: 123 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 22 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 81
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 82 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 139
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 140 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 168
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 65 EFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 124
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I+LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 125 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 182 AFQTILTEI 190
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 20 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQ 79
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 80 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 137
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 138 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 166
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 65 EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 124
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I+LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 125 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 181
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 182 AFQTILTEI 190
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 79/149 (53%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ +Y + Q
Sbjct: 21 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQ 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 81 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAK NVNE+F I +++
Sbjct: 139 DDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
+R+F +L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E+F S+ YI++ VVVY +TN ++F + + + +GS+ V I+LV NK D
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD-VIIMLVGNKTD 130
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
L S +R+V T +G+ A+ FIE SAK NV ++F +
Sbjct: 131 L-SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 171
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L +QF F +D TI +F + I +D L+I DTAG E F S+ Y + G
Sbjct: 26 LLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 85
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T TF + E R + + I+L+ NK DL S +REV +G+A A+
Sbjct: 86 ALLVYDITRRDTFNHLTTWLE-DARQHSNSNMVIMLIGNKSDLES-RREVKKEEGEAFAR 143
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
G F+E SAK +NV E F +E+
Sbjct: 144 EHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +F+ F Y TI DF K + ++ L++ DTAG E+F S+ YI++
Sbjct: 17 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 76
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
VVVY +TN ++FQ + + + +GS+ V I+LV NK DLA +R++ +G+ A
Sbjct: 77 VAVVVYDITNLNSFQQTSKWIDDVRTERGSD-VIIMLVGNKTDLA-DKRQITIEEGEQRA 134
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEI 262
+ FIE SAK NV ++F +
Sbjct: 135 KELSVMFIETSAKTGYNVKQLFRRV 159
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 41 EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 100
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 101 KEL--RDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 157
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 158 AFQTILTEI 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
+R+F +L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E+F S+ YI++ VVVY +TN ++FQ + + + +GS+ V I+LV NK D
Sbjct: 71 GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 129
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
LA +R+V +G+ A+ FIE SAK NV ++F +
Sbjct: 130 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ + Y + G ++VY + H T++++++ +
Sbjct: 41 EFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWL 100
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I+LV NK DL H R VPT + +A A+ FIE SA + TNV E
Sbjct: 101 KEL--RDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEE 157
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 158 AFKNILTEI 166
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 79.0 bits (193), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 72/129 (55%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + I+VD +I DTAG E++ ++ Y + G ++VY + H T++++++ +
Sbjct: 47 EFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWL 106
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL R + I LV NK DL H R VPT + +A A+ G FIE SA + TNV
Sbjct: 107 KEL--RDHADSNIVIXLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEA 163
Query: 258 MFAEIVREM 266
F I+ E+
Sbjct: 164 AFQTILTEI 172
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +F+ F Y TI DF K + ++ L++ DTAG E+F S+ YI++
Sbjct: 16 SLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST 75
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
VVVY +TN ++FQ + + + +GS+ V I+LV NK DLA +R+V +G+ A
Sbjct: 76 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTDLA-DKRQVSIEEGERKA 133
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEI 262
+ FIE SAK NV ++F +
Sbjct: 134 KELNVMFIETSAKAGYNVKQLFRRV 158
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++FV G F E + TI F + + +D EI DTAG E++ S+ Y + Q
Sbjct: 22 SLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQ 81
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F K + + R + S + I L NK DLA ++R V + Q+ A
Sbjct: 82 AAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLA-NKRAVDFQEAQSYA 139
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
F E SAK NVNE+F I +++
Sbjct: 140 DDNSLLFXETSAKTSXNVNEIFXAIAKKL 168
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 3/162 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
+R+F +L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 4 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E+F S+ YI++ VVVY +TN ++FQ + + + +GS+ V I+LV NK D
Sbjct: 64 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 122
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
LA +R+V +G+ A+ FIE SAK NV ++F +
Sbjct: 123 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 163
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L +QF F +D TI +F + + +D L+I DTAG E F S+ Y + G
Sbjct: 37 LLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG 96
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T TF + E R S + I+L+ NK DL S +R+V +G+A A+
Sbjct: 97 ALLVYDITRRETFNHLTSWLE-DARQHSSSNMVIMLIGNKSDLES-RRDVKREEGEAFAR 154
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
G F+E SAK NV E F +E+
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINTAKEI 182
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 90 LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTI-EDFYRKEIEVD 148
L+PR S +RE ++ +FV F PTI F K +
Sbjct: 14 LVPRGS-----AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTV--- 65
Query: 149 KAPCVLE-----ILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT 202
PC E I DTAG E+F S+ +Y + V+VY +T +F +K+ +KEL
Sbjct: 66 --PCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL-- 121
Query: 203 RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
+ G E + + + NK DL S REVP D + A+S G +E SAKN N+ E+F I
Sbjct: 122 KEHGPENIVMAIAGNKCDL-SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI 180
Query: 263 VREM 266
R++
Sbjct: 181 SRQI 184
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTA 160
+R+F +L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E+F S+ YI++ VVVY +TN ++FQ + + + +GS+ V I+LV NK D
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSD-VIIMLVGNKTD 132
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263
LA +R+V +G+ A+ FIE SAK NV ++F +
Sbjct: 133 LA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 78/147 (53%), Gaps = 6/147 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+F +G F E+ TI DF K +E+ L+I DTAG E+F ++ Y ++ G ++
Sbjct: 48 RFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL 107
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
Y +T +F + E + + GS V LL+ NK DL S REV + Q+LA+ +
Sbjct: 108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDL-SELREVSLAEAQSLAEHYD 165
Query: 242 --CPFIEASAKNKTNVNEMFAEIVREM 266
C IE SAK+ +NV E F + E+
Sbjct: 166 ILCA-IETSAKDSSNVEEAFLRVATEL 191
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
ED Y + + VD + +LD G ++ + D ++ G +++VYS+T+ +F+
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
+++ + R + +E +PI+LV NK DL REV +G+A A + C FIE SA + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDCKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNFNPE 271
V E+F IVR++ +
Sbjct: 159 VKELFEGIVRQVRLRRD 175
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 76/137 (55%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
ED Y + + VD + +LD G ++ + D ++ G +++VYS+T+ +F+
Sbjct: 73 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 130
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
+++ + R + +E +PI+LV NK DL REV +G+A A + C FIE SA + N
Sbjct: 131 SELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHN 189
Query: 255 VNEMFAEIVREMNFNPE 271
V E+F IVR++ +
Sbjct: 190 VKELFEGIVRQVRLRRD 206
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 77/149 (51%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
++ +F F Y TI DF K + +D+ P L++ DTAG E+F S+ YI++
Sbjct: 16 SIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSA 75
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
+VVY +TN +F++ + + I +G + V I LV NK DL R+V +G A
Sbjct: 76 AAIVVYDITNRQSFENTTKWIQDILNERGKD-VIIALVGNKTDLGD-LRKVTYEEGXQKA 133
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
Q + F E SAK N+ +F + ++
Sbjct: 134 QEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAP-CVLEILDTAGTEQFASMRDLYIKNG 176
+L ++V+ + ++Y TI DF KE+ VD +++ DTAG E+F S+ + +
Sbjct: 23 SLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGA 82
Query: 177 QGFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDG 233
V+VY +TN +F++IK ++ + V E P +++ NK+D ++ V
Sbjct: 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 234 QALAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264
Q LA+S G P SAKN NV+ F EI R
Sbjct: 143 QELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 6/134 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
ED Y + + VD + +LD G ++ + D ++ G +++VYS+T+ +F+
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
+++ + R + +E +PI+LV NK DL REV +G+A A + C FIE SA + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNF 268
V E+F IVR++
Sbjct: 159 VKELFEGIVRQVRL 172
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 123 QFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+FV F +PTI F K ++ I DTAG E+F ++ +Y + ++
Sbjct: 25 RFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84
Query: 182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
VY +T TF +K ++EL R G + + + NK DL + REV D + A S
Sbjct: 85 VYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYADSI 141
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAKN N+NE+F EI R +
Sbjct: 142 HAIFVETSAKNAININELFIEISRRI 167
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 123 QFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+FV F +PTI F K ++ I DTAG E+F ++ +Y + ++
Sbjct: 24 RFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAII 83
Query: 182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
VY +T TF +K ++EL R G + + + NK DL + REV D + A S
Sbjct: 84 VYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDL-TDVREVMERDAKDYADSI 140
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREM 266
F+E SAKN N+NE+F EI R +
Sbjct: 141 HAIFVETSAKNAININELFIEISRRI 166
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 8/179 (4%)
Query: 90 LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
L+PR S D +F F L +F F TI +F + + +
Sbjct: 14 LVPRGSEDYNFV---FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG 70
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGS 207
A +I DTAG E++ ++ Y + G ++V+ LT H T+ +++ +KEL + +
Sbjct: 71 TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT 130
Query: 208 ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ ++LV NK DL S REVPT + + A++ G F+E SA + TNV F +++E+
Sbjct: 131 --IVVMLVGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
+F K++EVD ++I DTAG E+F S+R + + ++ +S+ + +FQ++
Sbjct: 45 EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 104
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
KE I VK E P +++ NK+D++ +R+V T + QA + G P+ E SAK+ TN
Sbjct: 105 KEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162
Query: 255 VNEMFAEIVREM 266
V F E VR +
Sbjct: 163 VAAAFEEAVRRV 174
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
+F K++EVD ++I DTAG E+F S+R + + ++ +S+ + +FQ++
Sbjct: 43 EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 102
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
KE I VK E P +++ NK+D++ +R+V T + QA + G P+ E SAK+ TN
Sbjct: 103 KEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
Query: 255 VNEMFAEIVREM 266
V F E VR +
Sbjct: 161 VAAAFEEAVRRV 172
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + Y TI DF K +E+D L+I DTAG E+F ++ Y + G
Sbjct: 37 LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 96
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ +F +K + I R S V LLV NK DL +R V + A
Sbjct: 97 IIIVYDVTDQESFNGVKMWLQEIDRYATST-VLKLLVGNKCDL-KDKRVVEYDVAKEFAD 154
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ PF+E SA + TNV + F + R++
Sbjct: 155 ANKMPFLETSALDSTNVEDAFLTMARQI 182
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + Y TI DF K +E+D L+I DTAG E+F ++ Y + G
Sbjct: 24 LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ +F +K + I R S V LLV NK DL +R V + A
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLKLLVGNKCDL-KDKRVVEYDVAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ PF+E SA + TNV + F + R++
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 3/148 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + Y TI DF K +E+D L+I DTAG E+F ++ Y + G
Sbjct: 24 LLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHG 83
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++VY +T+ +F +K + I R S V LLV NK DL +R V + A
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEIDRYATS-TVLKLLVGNKCDL-KDKRVVEYDVAKEFAD 141
Query: 239 SWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ PF+E SA + TNV + F + R++
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQI 169
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+F F + TI DF + IE+D L+I DTAG E+F ++ Y + G ++
Sbjct: 27 RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +TN +F +I+ I S V +++ NK D+ + +R+V G+ LA +G
Sbjct: 87 VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDV-NDKRQVSKERGEKLALDYG 144
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
F+E SAK NV F + R++ +K+
Sbjct: 145 IKFMETSAKANINVENAFFTLARDIKAKMDKN 176
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 3/124 (2%)
Query: 138 EDFYRKEIEVDKAPCVLEILDTAGTEQFASM--RDLYIKNGQGFVVVYSLTNHHTFQDIK 195
ED Y + + VD L ++DT E+ ++ ++ G +V+VYS+ + +F+
Sbjct: 38 EDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESAS 97
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
+++ + R ++ VPI+LV NK DLA REV +G+A A + C FIE SA + NV
Sbjct: 98 ELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNV 156
Query: 256 NEMF 259
E+F
Sbjct: 157 AELF 160
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 73.9 bits (180), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQM- 197
+F K++EVD ++I DTAG E+F S+R + + ++ +S+ + +FQ++
Sbjct: 47 EFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWK 106
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
KE I VK E P +++ NK D+ +R+V T + QA + G P+ E SAK+ TN
Sbjct: 107 KEFIYYADVKEPESFPFVILGNKTDI--KERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164
Query: 255 VNEMFAEIVREM 266
V F E VR +
Sbjct: 165 VAAAFEEAVRRI 176
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 7/130 (5%)
Query: 134 DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQD 193
D ++ YR E V L+I DTAG E++ ++ Y + GF+++Y +TN +F
Sbjct: 59 DFKVKTVYRHEKRVK-----LQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113
Query: 194 IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253
++ I + + ++LV NK D+ +R VPT GQ LA+ G F EASAK
Sbjct: 114 VQDWATQI-KTYSWDNAQVILVGNKCDM-EEERVVPTEKGQLLAEQLGFDFFEASAKENI 171
Query: 254 NVNEMFAEIV 263
+V + F +V
Sbjct: 172 SVRQAFERLV 181
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 3/151 (1%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+F F + TI DF + IE+D L+I DTAG E+F ++ Y + G ++
Sbjct: 25 RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 84
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +TN +F +I+ I S V +++ NK D+ + +R+V G+ LA +G
Sbjct: 85 VYDITNEKSFDNIRNWIRNIEE-HASADVEKMILGNKCDV-NDKRQVSKERGEKLALDYG 142
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
F+E SAK NV F + R++ +K
Sbjct: 143 IKFMETSAKANINVENAFFTLARDIKAKMDK 173
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +++ F +K+ T++ F K++ + L I DTAG E+F ++ +Y ++
Sbjct: 21 SLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
G ++VY +T+ +FQ +K + + ++ G+E + + +V NK+DL +R V + ++ A
Sbjct: 81 GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+S G SAK + E+F ++ + M
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 82/149 (55%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +++ F +K+ T++ F K++ + L I DTAG E+F ++ +Y ++
Sbjct: 35 SLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 94
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
G ++VY +T+ +FQ +K + + ++ G+E + + +V NK+DL +R V + ++ A
Sbjct: 95 GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 152
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+S G SAK + E+F ++ + M
Sbjct: 153 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 74/129 (57%), Gaps = 4/129 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + + + A +I DTAG E++ ++ Y + G ++V+ LT H T+ +++ +
Sbjct: 46 EFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWL 105
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
KEL + + + ++LV NK DL S REVPT + + A++ G F+E SA + TNV
Sbjct: 106 KELYDHAEAT--IVVMLVGNKSDL-SQAREVPTEEARMFAENNGLLFLETSALDSTNVEL 162
Query: 258 MFAEIVREM 266
F +++E+
Sbjct: 163 AFETVLKEI 171
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 138 EDFYRKEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI 194
ED Y + + VD + +LD G ++ + D ++ G +++VYS+T+ +F+
Sbjct: 42 EDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKA 99
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254
+++ + R + +E +PI+LV NK DL REV +G+A A + FIE SA + N
Sbjct: 100 SELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158
Query: 255 VNEMFAEIVREMNFNPE 271
V E+F IVR++ +
Sbjct: 159 VKELFEGIVRQVRLRRD 175
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
DF K + L+I DTAG E++ ++ Y + GF+++Y + N +F ++
Sbjct: 58 DFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWA 117
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
I + + ++LV NK DL +R VP DG+ LA G F EASAK NV ++
Sbjct: 118 TQI-KTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175
Query: 259 FAEIV 263
F +V
Sbjct: 176 FERLV 180
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 81/149 (54%), Gaps = 3/149 (2%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L +++ F +K+ T+ F K++ + L I DTAG E+F ++ +Y ++
Sbjct: 21 SLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSN 80
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
G ++VY +T+ +FQ +K + + ++ G+E + + +V NK+DL +R V + ++ A
Sbjct: 81 GAILVYDITDEDSFQKVKNWVKELRKMLGNE-ICLCIVGNKIDLEK-ERHVSIQEAESYA 138
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+S G SAK + E+F ++ + M
Sbjct: 139 ESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
DF K I + L+I DTAG E++ ++ Y + GF+++Y +TN +F ++
Sbjct: 41 DFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS 100
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
I + + +LLV NK D+ +R V + G+ LA G F EASAK+ NV +
Sbjct: 101 TQI-KTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 158
Query: 259 FAEIV 263
F +V
Sbjct: 159 FERLV 163
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 79/155 (50%), Gaps = 15/155 (9%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEI---------EVDKAPCV-LEILDTAGTEQFASMRDL 171
Q+ G F K+ T+ DF K + V + + L++ DTAG E+F S+
Sbjct: 30 QYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89
Query: 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL 231
+ ++ GF++++ LTN +F +++ + SE I+L NK DL QR V
Sbjct: 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDL-EDQRAVKEE 148
Query: 232 DGQALAQSWGCPFIEASAKNKTNVN---EMFAEIV 263
+ + LA+ +G P+ E SA N TN++ EM +++
Sbjct: 149 EARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + S F Y PT+ D + + V+ A L + DTAG E + +R L + F
Sbjct: 24 LLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLA-------SHQREVP- 229
++ +SL + +++++ K + EL G VPI+LV KLDL H VP
Sbjct: 84 ILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTKLDLRDDKQFFIDHPGAVPI 140
Query: 230 -TLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
T+ G+ L + G P +IE S+K++ NV +F +R
Sbjct: 141 TTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 77/157 (49%), Gaps = 5/157 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++F F Y TI DF + +E++ L+I DTAG E+F ++ Y +
Sbjct: 24 SLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTH 83
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
G +VVY +T+ +F ++K+ I + + V +LV NK D ++ V T D A
Sbjct: 84 GVIVVYDVTSAESFVNVKRWLHEIN--QNCDDVCRILVGNKND-DPERKVVETEDAYKFA 140
Query: 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
G E SAK NV EMF + E+ +KDN
Sbjct: 141 GQMGIQLFETSAKENVNVEEMF-NCITELVLRAKKDN 176
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F +++EVD L+I DTAG E+F S+R + + ++ +S+ + +F+++
Sbjct: 43 EFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQ 102
Query: 198 KELI--TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254
KE I VK E P +++ NK+D R+V T + Q G P++E SAK+ TN
Sbjct: 103 KEFIYYADVKDPEHFPFVVLGNKVD--KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160
Query: 255 VNEMFAEIVREM 266
V F E VR++
Sbjct: 161 VTVAFEEAVRQV 172
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L Q+V+ F +Y TI DF KE+ VD ++I DTAG E+F S+ + +
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
V+V+ +T +TF+ + ++ + + E P +++ NK+DL R+V T Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
A S P+ E SAK NV + F I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-ASMRDLYIKNGQ 177
LT +F +G F ++ + TI DF + +++D +++ DTAG E+F SM Y +N
Sbjct: 36 LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
V VY +TN +F + E + + +P +LV NK DL S +VPT Q A
Sbjct: 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFA 154
Query: 238 QSWGCPFIEASAKNKTNVNEMFA 260
+ P E SAKN + + + A
Sbjct: 155 DTHSMPLFETSAKNPNDNDHVEA 177
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L Q+V+ F +Y TI DF KE+ VD ++I DTAG E+F S+ + +
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
V+V+ +T +TF+ + ++ + + E P +++ NK+DL R+V T Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
A S P+ E SAK NV + F I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L Q+V+ F +Y TI DF KE+ VD ++I DTAG E+F S+ + +
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
V+V+ +T +TF+ + ++ + + E P +++ NK+DL R+V T Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDL--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
A S P+ E SAK NV + F I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 3/143 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-ASMRDLYIKNGQ 177
LT +F +G F ++ + TI DF + +++D +++ DTAG E+F SM Y +N
Sbjct: 45 LTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 104
Query: 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237
V VY TN +F + E + + +P +LV NK DL S +VPT Q A
Sbjct: 105 AVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRS-AIQVPTDLAQKFA 163
Query: 238 QSWGCPFIEASAKNKTNVNEMFA 260
+ P E SAKN + + + A
Sbjct: 164 DTHSXPLFETSAKNPNDNDHVEA 186
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L ++F + E Y TI DF + IE+D L+I DTAG E+F ++ Y + G
Sbjct: 14 LLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG 73
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223
+VVY +T+ +F ++KQ + I R SE V LLV NK DL +
Sbjct: 74 IIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTT 117
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
ED Y + I VDK L + D + +RD ++ G F++V+S+T+ +F + +
Sbjct: 58 EDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPE 117
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
+ + +P++LV NK DLA REV +G+ LA + C IE SA N
Sbjct: 118 TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176
Query: 257 EMFAEIVREMNFNPEKDNA 275
E+F VR++ +++A
Sbjct: 177 ELFEGAVRQIRLRRGRNHA 195
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 7/151 (4%)
Query: 119 ALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L Q+V+ F +Y TI DF KE+ VD ++I DTAG E+F S+ + +
Sbjct: 23 SLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGAD 82
Query: 178 GFVVVYSLTNHHTFQDIKQMKE---LITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
V+V+ +T +TF+ + ++ + + E P +++ NK+D R+V T Q
Sbjct: 83 CCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDF--ENRQVATKRAQ 140
Query: 235 ALAQSW-GCPFIEASAKNKTNVNEMFAEIVR 264
A S P+ E SAK NV + F I R
Sbjct: 141 AWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 1/100 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
G +V+VYS+T+ +F+ +++ + R + ++ VPI+LV NK DL REV +G+A
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 136
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNA 275
A + C FIE SA NV +F +VR++ + A
Sbjct: 137 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 2/125 (1%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK 198
DF K I + L+I DTAG E++ ++ Y + GF++ Y +TN +F ++
Sbjct: 44 DFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS 103
Query: 199 ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258
I + + +LLV NK D +R V + G+ LA G F EASAK+ NV +
Sbjct: 104 TQI-KTYSWDNAQVLLVGNKCD-XEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161
Query: 259 FAEIV 263
F +V
Sbjct: 162 FERLV 166
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
G +V+VYS+T+ +F+ +++ + R + ++ VPI+LV NK DL REV +G+A
Sbjct: 78 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 136
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
A + C FIE SA NV +F +VR++ +
Sbjct: 137 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRD 172
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
++ G F + Y TI DF ++I+V+ L + DTAG E+F ++ Y + Q V+
Sbjct: 24 RYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
V+S T+ +F+ I +E + G +P LV NK+DL + + + LA+
Sbjct: 84 VFSTTDRESFEAISSWREKVVAEVGD--IPTALVQNKIDLLDDSC-IKNEEAEGLAKRLK 140
Query: 242 CPFIEASAKNKTNVNEMF 259
F S K NV+E+F
Sbjct: 141 LRFYRTSVKEDLNVSEVF 158
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
Query: 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA 235
G +V+VYS+T+ +F+ +++ + R + ++ VPI+LV NK DL REV +G+A
Sbjct: 73 GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRA 131
Query: 236 LAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN 269
A + C FIE SA NV +F +VR++
Sbjct: 132 CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 3/144 (2%)
Query: 120 LTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
L +F G F TI DF K +E++ L+I DTAG E+F S+ Y ++
Sbjct: 42 LVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ 238
++ Y +T +F+ + + I + S +V +LV NK+DLA +REV + ++
Sbjct: 102 LILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLA-ERREVSQQRAEEFSE 159
Query: 239 SWGCPFIEASAKNKTNVNEMFAEI 262
+ ++E SAK NV ++F ++
Sbjct: 160 AQDMYYLETSAKESDNVEKLFLDL 183
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
+ + + S F Y PT+ D + + VD L + DTAG E + +R L + F
Sbjct: 22 MLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLA-------SHQREVP- 229
++ +SL + +++++ K + EL G VPI+LV KLDL H VP
Sbjct: 82 ILAFSLISKASYENVAKKWIPELRHYAPG---VPIILVGTKLDLRDDKQFFIDHPGAVPI 138
Query: 230 -TLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
T G+ L + G P +IE S+K + NV +F ++
Sbjct: 139 TTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIK 175
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 119 ALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177
+L ++F F + TI DF K I VD L I DTAG E+F ++ Y + Q
Sbjct: 30 SLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89
Query: 178 GFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
G ++VY +T TF + + EL T ++ V LV NK+D REV +G
Sbjct: 90 GVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN-XLVGNKID--KENREVDRNEGLKF 146
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
A+ FIEASAK V F E+V ++ P
Sbjct: 147 ARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTP 180
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 13/159 (8%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
+ S F Y PT+ D + + VD L + DTAG E ++ +R L + FV+ +
Sbjct: 29 YTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAF 88
Query: 184 SLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLD-------LASHQREVPTLDGQ 234
SL + +++++ K M EL + + VPI+LV KLD LA H + + G+
Sbjct: 89 SLISKASYENVLKKWMPEL---RRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGE 145
Query: 235 ALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272
L + G +IE S+K + NV +F ++ + P +
Sbjct: 146 ELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + +E++ +I DTAG E++ ++ Y + G ++VY ++ ++++ +
Sbjct: 49 EFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL 108
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
EL R + V + L+ NK DLA H R VPT + + AQ F E SA N NV++
Sbjct: 109 SEL--RENADDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENVDK 165
Query: 258 MFAEIV 263
F E++
Sbjct: 166 AFEELI 171
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 3/148 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
QF FM TI +F + IEV L+I DTAG E+F ++ Y + G ++
Sbjct: 34 QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +T T+ + + V I+L+ NK DL + QR+V + + A+ G
Sbjct: 94 VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA-QRDVTYEEAKQFAEENG 151
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFN 269
F+EASAK NV + F E +++ N
Sbjct: 152 LLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
ED Y + I VDK L + D + ++D ++ G F++V+S+T+ +F + +
Sbjct: 37 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 96
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
+ + +P++LV NK DLA REV +G+ LA + C IE SA N
Sbjct: 97 TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155
Query: 257 EMFAEIVREMNFN 269
E+F VR++
Sbjct: 156 ELFEGAVRQIRLR 168
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 138 EDFYRKEIEVDKAPCVLEILDT-AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ 196
ED Y + I VDK L + D + ++D ++ G F++V+S+T+ +F + +
Sbjct: 47 EDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPE 106
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
+ + +P++LV NK DLA REV +G+ LA + C IE SA N
Sbjct: 107 TLLRLRAGRPHHDLPVILVGNKSDLAR-SREVSLEEGRHLAGTLSCKHIETSAALHHNTR 165
Query: 257 EMFAEIVREMNFN 269
E+F VR++
Sbjct: 166 ELFEGAVRQIRLR 178
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 66/126 (52%), Gaps = 4/126 (3%)
Query: 139 DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-M 197
+F + IEV+ +I DTAG E++ ++ Y + G ++VY ++ ++++ +
Sbjct: 46 EFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL 105
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
EL R + V + L+ NK DLA H R VPT + + A F E SA N NV++
Sbjct: 106 TEL--RENADDNVAVGLIGNKSDLA-HLRAVPTDEAKNFAMENQMLFTETSALNSDNVDK 162
Query: 258 MFAEIV 263
F E++
Sbjct: 163 AFRELI 168
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
QF+ F + + TI +F K I V L+I DTAG E+F S+ Y + G ++
Sbjct: 29 QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +T+ T+ + R+ S+ + I+L NK DL + REV L+ AQ
Sbjct: 89 VYDITSRETYNALTNWL-TDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 146
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
F+E SA NV E F + R++
Sbjct: 147 LMFLETSALTGENVEEAFVQCARKI 171
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
L++ DTAG E+F S+ + ++ GF++++ LT+ +F +++ + E I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
L+ NK DL QREV + LA+ +G P+ E SA NV +
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEK 174
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 77/157 (49%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F E+Y PT+ D Y + V +L + DTAG E + +R L F
Sbjct: 34 LLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLD------ 232
++ +S+ N +FQ++K+ E + +K + VP LL+ ++DL + + L+
Sbjct: 94 LICFSVVNPASFQNVKE--EWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKP 151
Query: 233 -----GQALAQSWG-CPFIEASAKNKTNVNEMFAEIV 263
GQ LA+ G C ++E SA + + +F E +
Sbjct: 152 ICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 188
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
L++ DTAG E+F S+ + ++ GF++++ LT+ +F +++ + E I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
L+ NK DL QREV + LA+ +G P+ E SA NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
L++ DTAG E+F S+ + ++ GF++ + LT+ +F +++ + E I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
L+ NK DL QREV + LA+ +G P+ E SA NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 6/176 (3%)
Query: 90 LLPRCSIDNSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD 148
L+PR SI + F F L QF+ F + + TI +F + + V
Sbjct: 14 LVPRGSIWSDFL---FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG 70
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208
L+I DTAG E+F S+ Y + G ++VY +T+ T+ + R S
Sbjct: 71 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWL-TDARTLASP 129
Query: 209 RVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
+ ++L NK DL +REV L+ AQ F+E SA NV E F + R
Sbjct: 130 NIVVILCGNKKDL-DPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR 184
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 79/160 (49%), Gaps = 19/160 (11%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 41 LLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + + VK VPI+LVANK DL S Q
Sbjct: 101 LMCFSVDSPDSLENIPE--KWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEP 158
Query: 228 VPTLDGQALA---QSWGCPFIEASAKNKTNVNEMFAEIVR 264
V T DG+A+A Q++ ++E SAK K V E+F R
Sbjct: 159 VRTDDGRAMAVRIQAYD--YLECSAKTKEGVREVFETATR 196
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
L++ DTAG E+F S+ + ++ GF++ + LT+ +F +++ + E I+
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
L+ NK DL QREV + LA+ +G P+ E SA NV
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNV 172
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
L++ DTAG E+F S+ + ++ GF++++ LT+ +F +++ + E I+
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
L+ NK DL QREV + LA +G P+ E SA NV
Sbjct: 146 LIGNKADLPD-QREVNERQARELADKYGIPYFETSAATGQNV 186
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 64/113 (56%), Gaps = 5/113 (4%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL 213
+I DTAG E++AS+ LY + +VV+ ++N +T + + K + ++K S I+
Sbjct: 95 FDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNT---LDRAKTWVNQLKISSNYIII 151
Query: 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
LVANK+D ++ +V L+ Q AQ FI+ SAK TN+ +F + E+
Sbjct: 152 LVANKID--KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
QF+ F + + TI +F K I V L+I DTAG E+F S+ Y + G ++
Sbjct: 30 QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 89
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +T+ T+ + R+ S+ + I+L NK DL + REV L+ AQ
Sbjct: 90 VYDITSRETYNALTNWL-TDARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 147
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
F+E SA +V E F + R++
Sbjct: 148 LMFLETSALTGEDVEEAFVQCARKI 172
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
QF+ F + + TI +F K I V L+I DTAG E+F S+ Y + G ++
Sbjct: 27 QFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALL 86
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +T+ T+ + R+ S+ + I+L NK DL + REV L+ AQ
Sbjct: 87 VYDITSRETYNALTNWLT-DARMLASQNIVIILCGNKKDLDA-DREVTFLEASRFAQENE 144
Query: 242 CPFIEASAKNKTNVNEMFAEIVREM 266
F+E SA +V E F + R++
Sbjct: 145 LMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 139 DFYRKEIEVDKAPCV-LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQ 196
+F K I++ + +I DTAG E++ ++ Y + G ++VY +T ++F++I K
Sbjct: 43 EFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKW 102
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
+KEL R + ILLV NK DL H R + D A+ FIE SA TNV
Sbjct: 103 LKEL--RDNADSNIVILLVGNKSDL-KHLRVINDNDATQYAKKEKLAFIETSALEATNVE 159
Query: 257 EMFAEIVREM 266
F +++ E+
Sbjct: 160 LAFHQLLNEI 169
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
QF FM TI +F + IEV L+I DTAG +F ++ Y + G ++
Sbjct: 49 QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALM 108
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
VY +T T+ + + V I+L+ NK DL + QR+V + + A+ G
Sbjct: 109 VYDITRRSTYNHLSSWLTDARNLTNPNTV-IILIGNKADLEA-QRDVTYEEAKQFAEENG 166
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFN 269
F+EASAK NV + F E +++ N
Sbjct: 167 LLFLEASAKTGENVEDAFLEAAKKIYQN 194
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 15/157 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
+ + + F Y PT+ D + + VD + L + DTAG E + +R L + F
Sbjct: 22 MLISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF 81
Query: 180 VVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLASHQR---------EV 228
++ +SL + ++++I K + EL G +PI+LV KLDL ++ +
Sbjct: 82 LLAFSLISKASYENIHKKWLPELKHYAPG---IPIVLVGTKLDLRDDKQFLKDHPGAASI 138
Query: 229 PTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
T G+ L + G ++E S+K + NV +F +R
Sbjct: 139 TTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIR 175
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PILLV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 137
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 138 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 20 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PILLV KLDL + + L
Sbjct: 80 LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 138
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 139 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 20 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PILLV KLDL + + L
Sbjct: 80 LICFSLVSPASFENVRAKWYPEVR-HHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPI 138
Query: 232 ---DGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 139 TYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAV 177
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 17/157 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+L + F G F E Y PT+ + Y ++V P L I DTAG + + +R L+ +
Sbjct: 49 SLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV 108
Query: 179 FVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANKLDLASHQREVPTL----- 231
++ + +T+ ++F +I + E+ K +VPI++V K DL + V L
Sbjct: 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCK---KVPIIVVGCKTDLRKDKSLVNKLRRNGL 165
Query: 232 ------DGQALAQSWGC-PFIEASAKNKTNVNEMFAE 261
GQ +A+S G ++E SA+ NV+ +F E
Sbjct: 166 EPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQE 202
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 26 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 86 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 144
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 145 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 29 LLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 88
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 89 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 147
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 148 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 186
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 60.5 bits (145), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 38 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 97
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 98 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 156
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 157 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 195
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 22 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 82 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 140
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 141 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 179
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 46 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 46 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY PT+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
+ ++G F +KY TI FY E+ ++ DTAG E+F +RD Y N
Sbjct: 24 RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 78
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
Q ++++ +T+ T++++ + RV E +PI+L NK+D+ + + T+
Sbjct: 79 QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 133
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ + + SAK+ N + F + R++ NP+
Sbjct: 134 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 168
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
+ ++G F +KY TI FY E+ ++ DTAG E+F +RD Y N
Sbjct: 23 RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 77
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
Q ++++ +T+ T++++ + RV E +PI+L NK+D+ + + T+
Sbjct: 78 QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 132
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ + + SAK+ N + F + R++ NP+
Sbjct: 133 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 167
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 75/149 (50%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY PT+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 16/155 (10%)
Query: 123 QFVSGCFMEKYDPTIE------DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176
+ ++G F +KY TI FY E+ ++ DTAG E+F +RD Y N
Sbjct: 31 RHLTGEFEKKYIATIGVEVHPLSFYTNFGEIK-----FDVWDTAGLEKFGGLRDGYYINA 85
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236
Q ++++ +T+ T++++ + RV E +PI+L NK+D+ + + T+
Sbjct: 86 QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKERKVKAKTI---TF 140
Query: 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ + + SAK+ N + F + R++ NP+
Sbjct: 141 HRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQ 175
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 46 LLISYTTNALPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 106 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 164
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
G A+A+ G ++E SA + + +F E +R +
Sbjct: 165 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 16/165 (9%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
+L V + + + +Y PT D + + VD P L++ DTAG ++F +R L N
Sbjct: 35 SLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDI 94
Query: 179 FVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDL-----------ASHQR 226
F++ +S+ + +FQ++ + + + ++ + PI+LV + DL ++
Sbjct: 95 FLLCFSVVSPSSFQNVSE--KWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEK 152
Query: 227 EVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMF-AEIVREMNFN 269
VP + LA+ +IE SA + N+ E+F A IV + ++
Sbjct: 153 PVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F ++ R PI+LV KLDL + + L
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
G A+A+ G ++E SA + + +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F ++ R PI+LV KLDL + + L
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
G A+A+ G ++E SA + + +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 13/157 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 171 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F ++ R PI+LV KLDL + + L
Sbjct: 231 LICFSLVSPASFHHVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 289
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
G A+A+ G ++E SA + + +F E +R
Sbjct: 290 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 326
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 26 LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + ++++++ K PI+LV KLDL + + L
Sbjct: 86 LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 144
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
G ALA+ ++E SA + + +F E +R +
Sbjct: 145 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 183
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 25 LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 84
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + ++++++ K PI+LV KLDL + + L
Sbjct: 85 LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 143
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
G ALA+ ++E SA + + +F E +R +
Sbjct: 144 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 182
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + ++++++ K PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASYENVR-AKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPI 137
Query: 232 ---DGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
G ALA+ ++E SA + + +F E +R +
Sbjct: 138 TYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAV 176
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 21 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 81 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 139
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 140 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 23 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 83 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 141
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 142 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 72/163 (44%), Gaps = 13/163 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L
Sbjct: 19 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL-------- 231
++ +SL + +F++++ R PI+LV KLDL + + L
Sbjct: 79 LICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPI 137
Query: 232 ---DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
G A+A+ G ++E SA + + +F E +R + P
Sbjct: 138 TYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 25 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 84
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 85 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 139
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 140 LQYYDISAKSNYNFEKPFLWLARKLIGDP 168
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 31 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 90
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 91 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 145
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 146 LQYYDISAKSNYNFEKPFLWLARKLIGDP 174
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 127 GCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186
G F E Y PT+ + Y ++EVD L + DTAG E + +R L + ++ +S+
Sbjct: 33 GQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSID 92
Query: 187 NHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDG 233
+ +++++ + E++ +G VPI+LV K+DL + Q+ V + +G
Sbjct: 93 LPDSLENVQEKWIAEVLHFCQG---VPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEG 149
Query: 234 QALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
Q++A G + E SAK V E+F R
Sbjct: 150 QSVADQIGATGYYECSAKTGYGVREVFEAATR 181
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 25 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 84
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 85 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 142
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 143 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 23 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 83 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 22 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 82 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 139
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 140 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 22 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 82 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 139
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 140 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 21 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 81 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 138
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 139 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 24 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 83
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 84 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 141
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 142 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 23 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 83 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 5/169 (2%)
Query: 102 MREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDT 159
MR+ +LT F F ++Y TI DF+ + I + L+I D
Sbjct: 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDI 63
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV-KGSERVPIL-LVAN 217
G M D YI QG ++VY +TN+ +F++++ ++ +V + SE P++ LV N
Sbjct: 64 GGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGN 123
Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
K+DL H R + Q G SAK +V F ++ E+
Sbjct: 124 KIDL-EHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 23 LLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 83 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEP 140
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 141 VKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 22 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 81
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 82 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 136
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 137 LQYYDISAKSNYNFEKPFLWLARKLIGDP 165
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 34 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 93
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 94 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 148
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 149 LQYYDISAKSNYNFEKPFLWLARKLIGDP 177
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 28 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 88 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 33 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSP 92
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 93 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 150
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 151 ANRIGAFGYMECSAKTKDGVREVFEMATR 179
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 90 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 28 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 87
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 88 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 145
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 146 ANRIGAFGYMECSAKTKDGVREVFEMATR 174
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 90 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 15/149 (10%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 30 FPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL + Q V +G+ +
Sbjct: 90 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDM 147
Query: 237 AQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
A G ++E SAK K V E+F R
Sbjct: 148 ANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
+ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 XFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 74/149 (49%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E++ +RD Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKYGGLRDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 41 LLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL Q
Sbjct: 101 LMCFSIDSPDSLENIPE--KWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEP 158
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V + +G+ +A ++E SAK K V E+F R
Sbjct: 159 VRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 19/160 (11%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F E Y PT+ + Y +IEVD L + DTAG E + +R L +
Sbjct: 41 LLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL Q
Sbjct: 101 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEP 158
Query: 228 VPTLDGQALAQ---SWGCPFIEASAKNKTNVNEMFAEIVR 264
V + +G+ +A ++G ++E SAK K V E+F R
Sbjct: 159 VRSEEGRDMANRISAFG--YLECSAKTKEGVREVFEMATR 196
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 15/158 (9%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F F Y PT+ + Y +IEVD L + DTAG E + R L +
Sbjct: 21 LLIVFSKDQFPAVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVI 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQRE 227
++ +S+ + + ++I + + VK VPI+LV NK DL + Q
Sbjct: 81 LMCFSIDSPDSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEP 138
Query: 228 VPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
V +G+ +A G ++E SAK K V E+F R
Sbjct: 139 VKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 22 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 82 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 140
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 141 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 191
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 23 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 83 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 141
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 142 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 192
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS 207
++ P + DTAG E+F +RD Y Q ++++ +T+ T++++ + RV
Sbjct: 60 NRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRV--C 117
Query: 208 ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
E +PI+L NK+D+ + + ++ + + + SAK+ N + F + R++
Sbjct: 118 ENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
Query: 268 FNP 270
+P
Sbjct: 175 GDP 177
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 20 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 79
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 80 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 138
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 139 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 189
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 21 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 81 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 139
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 140 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 190
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 13/171 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278
+ LA+ ++E SA + + +F E + PE + C
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRC 188
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 73/149 (48%), Gaps = 6/149 (4%)
Query: 123 QFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181
+ ++G F +KY T+ + + ++ P + DTAG E+F + D Y Q ++
Sbjct: 29 RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLEDGYYIQAQCAII 88
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
++ +T+ T++++ + RV E +PI+L NK+D+ + + ++ +
Sbjct: 89 MFDVTSRVTYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN 143
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNP 270
+ + SAK+ N + F + R++ +P
Sbjct: 144 LQYYDISAKSNYNFEKPFLWLARKLIGDP 172
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 129 FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188
F E Y PT+ + Y +IEVD L + DTAG E + +R L + ++ +S+ +
Sbjct: 30 FPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 89
Query: 189 HTFQDIKQMKELITRVKG-SERVPILLVANKLDLAS-----------HQREVPTLDGQAL 236
+ ++I + + VK VPI+LV NK DL Q V + +G+ +
Sbjct: 90 DSLENIPE--KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDM 147
Query: 237 AQ---SWGCPFIEASAKNKTNVNEMFAEIVR 264
A ++G ++E SAK K V E+F R
Sbjct: 148 ANRISAFG--YLECSAKTKEGVREVFEMATR 176
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 32/182 (17%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG- 178
L + + + F +Y PT+ D Y + VD P L + DTAG E + +R L G
Sbjct: 21 LLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGE 80
Query: 179 ------------------FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
F++ +SL + +F++++ R PI+LV KLD
Sbjct: 81 TYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR-HHCPNTPIILVGTKLD 139
Query: 221 LASHQREVPTL-----------DGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNF 268
L + + L G A+A+ G ++E SA + + +F E +R +
Sbjct: 140 LRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 199
Query: 269 NP 270
P
Sbjct: 200 PP 201
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 29 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 88
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 89 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 147
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 148 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 191
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 23 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 82
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 83 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 141
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 142 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 177
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 21 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 80
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 81 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 139
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 140 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 175
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 26 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 86 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 144
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 145 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 181
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 22 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 81
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 82 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 140
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 141 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 184
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 26 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 85
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 86 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 144
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ LA+ ++E SA + + +F E + PE
Sbjct: 145 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPE 188
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F G Y PT+ + + ++ +L + DTAG E++ +R L +
Sbjct: 39 LLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98
Query: 180 VVVYSLTNHHTFQDIK-----QMKELITRVKGSERVPILLVANKLDL-ASHQREVPTLDG 233
++ +++ N +F +I ++K I K +LV K+DL +V +G
Sbjct: 99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------TVLVGLKVDLRKDGSDDVTKQEG 152
Query: 234 QALAQSWGC-PFIEASAKNKTNVNEMFAEIV 263
L Q GC +IEAS+ K +NE+F + V
Sbjct: 153 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 183
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + F G Y PT+ + + ++ +L + DTAG E++ +R L +
Sbjct: 38 LLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 97
Query: 180 VVVYSLTNHHTFQDIK-----QMKELITRVKGSERVPILLVANKLDL-ASHQREVPTLDG 233
++ +++ N +F +I ++K I K +LV K+DL +V +G
Sbjct: 98 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAK------TVLVGLKVDLRKDGSDDVTKQEG 151
Query: 234 QALAQSWGC-PFIEASAKNKTNVNEMFAEIV 263
L Q GC +IEAS+ K +NE+F + V
Sbjct: 152 DDLCQKLGCVAYIEASSVAKIGLNEVFEKSV 182
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + F +Y P + D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKFPSEYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
Query: 120 LTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179
L + + + +Y PT+ D Y + + P L + DTAG E + +R L F
Sbjct: 19 LLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVF 78
Query: 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-----------ASHQREV 228
+V +S+ + +F+++K+ K + + P LLV ++DL + Q+ +
Sbjct: 79 LVCFSVVSPSSFENVKE-KWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI 137
Query: 229 PTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIV 263
+ LA+ ++E SA + + +F E +
Sbjct: 138 TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 123 QFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLE--ILDTAGTEQFASMRDLYIKNGQGFV 180
+ + G F + Y+ T+ +D V++ + DTAG E+ A ++D+Y G +
Sbjct: 30 RVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89
Query: 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
+ + +T+ T Q++ + + V G+E PI++ ANK+D+ + Q+ L + L +
Sbjct: 90 LFFDVTSRITCQNLARWVKEFQAVVGNE-APIVVCANKIDIKNRQKISKKLVMEVL-KGK 147
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
+ E SAK N F + R P+
Sbjct: 148 NYEYFEISAKTAHNFGLPFLHLARIFTGRPD 178
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
AL F CF E Y PT+ + Y E+D L + DT+G+ + ++R L +
Sbjct: 43 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
++ + ++ T + K+ K I + + +LLV K DL S+ R+
Sbjct: 103 VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 160
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
P G +A+ G +IE SA +++ +V ++F
Sbjct: 161 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 195
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
AL F CF E Y PT+ + Y E+D L + DT+G+ + ++R L +
Sbjct: 22 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
++ + ++ T + K+ K I + + +LLV K DL S+ R+
Sbjct: 82 VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 139
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
P G +A+ G +IE SA +++ +V ++F
Sbjct: 140 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 174
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 16/155 (10%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178
AL F CF E Y PT+ + Y E+D L + DT+G+ + ++R L +
Sbjct: 38 ALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 97
Query: 179 FVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLA---------SHQREV 228
++ + ++ T + K+ K I + + +LLV K DL S+ R+
Sbjct: 98 VLICFDISRPETLDSVLKKWKGEIQEFCPNTK--MLLVGCKSDLRTDVSTLVELSNHRQT 155
Query: 229 PTL--DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
P G +A+ G +IE SA +++ +V ++F
Sbjct: 156 PVSYDQGANMAKQIGAATYIECSALQSENSVRDIF 190
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
C+ E Y PT+ + Y +E ++ L + DT+G+ + ++R L + ++ +
Sbjct: 31 LAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 90
Query: 184 SLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL-- 231
++ T +K+ + I S RV LL+ K DL SHQ++ P
Sbjct: 91 DISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYE 148
Query: 232 DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
G A+A+ G ++E SA ++ +++ +F
Sbjct: 149 QGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 178
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
C+ E Y PT+ + Y +E ++ L + DT+G+ + ++R L + ++ +
Sbjct: 30 LAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCF 89
Query: 184 SLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL-- 231
++ T +K+ + I S RV LL+ K DL SHQ++ P
Sbjct: 90 DISRPETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYE 147
Query: 232 DGQALAQSWGCP-FIEASA-KNKTNVNEMF 259
G A+A+ G ++E SA ++ +++ +F
Sbjct: 148 QGCAIAKQLGAEIYLEGSAFTSEKSIHSIF 177
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 70/146 (47%), Gaps = 16/146 (10%)
Query: 128 CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN 187
C+ E Y PT+ + Y +E ++ L + DT+G+ + ++R L + ++ + ++
Sbjct: 51 CYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 110
Query: 188 HHTFQD-IKQMKELITRVKGSERVPILLVANKLDLA---------SHQREVPTL--DGQA 235
T +K+ + I S RV LL+ K DL SHQ++ P G A
Sbjct: 111 PETVDSALKKWRTEILDYCPSTRV--LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCA 168
Query: 236 LAQSWGCP-FIEASA-KNKTNVNEMF 259
+A+ G ++E SA ++ +++ +F
Sbjct: 169 IAKQLGAEIYLEGSAFTSEKSIHSIF 194
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE--QFASMRDLYIKNG 176
AL ++++G ++++ P F +KEI VD +L I D G QFA+ D
Sbjct: 35 ALVHRYLTGTYVQEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPPELQFAAWVD------ 87
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL-ASHQREVPTLDGQA 235
V V+SL + +FQ + + + + VP++LV + + A++ R + +
Sbjct: 88 -AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARK 146
Query: 236 LAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
L+ C + E A NV +F ++ +++
Sbjct: 147 LSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI- 212
L +LDTAG++ + Y ++V+ +++ +F+ K EL+ + P+
Sbjct: 75 LFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLR 134
Query: 213 -LLVANKLDLASHQREVPTLDGQALAQSWG 241
+LVANK DL + +V LD +AQ W
Sbjct: 135 AVLVANKTDLPPQRHQV-RLD---MAQDWA 160
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT--EQFASMRDLYIKNG 176
+L +F++G + + + T + Y+KE+ VD ++ I + AG +F+ D I
Sbjct: 22 SLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVI--- 77
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSER--VPILLVANKLDL-ASHQREVPTLDG 233
V+SL + ++FQ + ++ ++ ++G R + + LV + + AS R V
Sbjct: 78 ----FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133
Query: 234 QAL-AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+AL A C + E A NV+ +F E+ +++
Sbjct: 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 119 ALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT--EQFASMRDLYIKNG 176
+L +F++G + + + T + Y+KE+ VD ++ I + AG +F+ D I
Sbjct: 22 SLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADAVI--- 77
Query: 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSER--VPILLVANKLDL-ASHQREVPTLDG 233
V+SL + ++FQ + ++ ++ ++G R + + LV + + AS R V
Sbjct: 78 ----FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133
Query: 234 QAL-AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+AL A C + E A NV+ +F E+ +++
Sbjct: 134 RALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 34.7 bits (78), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH-------HTFQDIKQMKEL 200
+K + D G ++F + + Y N + V ++H Q + + +++
Sbjct: 59 EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDI 118
Query: 201 ITRVKGSERVPILLVANKLDLAS 223
+ G RVP L ANK+D A
Sbjct: 119 RRELPGGGRVPFLFFANKMDAAG 141
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 8/136 (5%)
Query: 90 LLPRCSID---NSFTMREFXXXXXXXXXXXXXALTVQFVSGCFMEKYDPTIEDFYRKEIE 146
L+PR S+D F E SG F E PT+ RK
Sbjct: 14 LVPRGSLDWFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--- 70
Query: 147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIK-QMKELITRVK 205
+ K +++ D G +F SM + Y + V + + + K ++ L+ + +
Sbjct: 71 ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ 130
Query: 206 GSERVPILLVANKLDL 221
+ +P+L++ NK DL
Sbjct: 131 -LQGIPVLVLGNKRDL 145
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 124 FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183
SG F E PT+ RK + K +++ D G +F SM + Y + V +
Sbjct: 42 IASGQFNEDMIPTVGFNMRK---ITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98
Query: 184 SLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDL 221
+ + K ++ L+ + + + +P+L++ NK DL
Sbjct: 99 DAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDL 136
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 156 ILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE----RVP 211
+ D +G ++ ++ + Y K GQ +++ + + + + +EL T + + R+P
Sbjct: 71 VFDMSGQGRYRNLWEHYYKEGQA--IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIP 128
Query: 212 ILLVANKLDL 221
IL ANK+DL
Sbjct: 129 ILFFANKMDL 138
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 26/83 (31%)
Query: 209 RVPILLVANKLDLASH------------------------QREVPTLDGQALAQSWGCPF 244
+VPILLV NKLD A + +R+V L LA PF
Sbjct: 117 KVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPF 176
Query: 245 I--EASAKNKTNVNEMFAEIVRE 265
E AK+ E AEI+RE
Sbjct: 177 FYPEDYAKSDQTFGEWVAEILRE 199
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-S 207
K VL + D AG E+F S + ++ VY L+ ++ K + +K +
Sbjct: 51 KRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQA--EVDAXKPWLFNIKARA 108
Query: 208 ERVPILLVANKLDLASHQRE 227
P++LV LD++ ++
Sbjct: 109 SSSPVILVGTHLDVSDEKQR 128
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 156 ILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLV 215
+ D G ++ + Y +N QG + V + Q++ + + V +LL
Sbjct: 65 VWDVGGQDRIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLF 124
Query: 216 ANKLDL 221
ANK DL
Sbjct: 125 ANKQDL 130
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-S 207
K VL + D AG E+F S + ++ VY L+ ++ K + +K +
Sbjct: 53 KRDLVLNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQA--EVDAXKPWLFNIKARA 110
Query: 208 ERVPILLVANKLDLASHQRE 227
P++LV LD++ ++
Sbjct: 111 SSSPVILVGTHLDVSDEKQR 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,762,956
Number of Sequences: 62578
Number of extensions: 287749
Number of successful extensions: 1551
Number of sequences better than 100.0: 302
Number of HSP's better than 100.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 952
Number of HSP's gapped (non-prelim): 304
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)