Query psy10504
Match_columns 286
No_of_seqs 255 out of 2125
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 19:50:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 5.1E-35 1.1E-39 235.5 17.8 169 103-273 8-178 (205)
2 KOG0092|consensus 100.0 3.1E-34 6.7E-39 230.1 18.5 171 102-274 3-174 (200)
3 KOG0094|consensus 100.0 3.2E-34 7E-39 230.1 17.9 174 99-273 17-191 (221)
4 cd01875 RhoG RhoG subfamily. 100.0 1.6E-32 3.4E-37 229.4 21.5 177 103-286 2-191 (191)
5 KOG0078|consensus 100.0 7.9E-33 1.7E-37 225.9 19.0 167 100-268 8-175 (207)
6 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 3.4E-32 7.3E-37 223.6 20.9 167 104-271 2-168 (172)
7 cd04121 Rab40 Rab40 subfamily. 100.0 5.4E-32 1.2E-36 225.5 21.7 163 103-268 5-168 (189)
8 KOG0080|consensus 100.0 1.4E-32 3E-37 213.7 15.7 169 102-271 9-178 (209)
9 cd04133 Rop_like Rop subfamily 100.0 8.1E-32 1.7E-36 222.0 20.5 162 105-268 2-174 (176)
10 cd04120 Rab12 Rab12 subfamily. 100.0 9.5E-32 2.1E-36 226.2 20.7 162 105-268 1-164 (202)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 1.3E-31 2.8E-36 222.1 20.5 163 102-266 3-179 (182)
12 cd04136 Rap_like Rap-like subf 100.0 1.3E-31 2.9E-36 217.1 20.1 161 105-266 2-162 (163)
13 cd04175 Rap1 Rap1 subgroup. T 100.0 1.4E-31 3.1E-36 217.6 19.9 163 104-267 1-163 (164)
14 PTZ00369 Ras-like protein; Pro 100.0 1.7E-31 3.7E-36 222.7 20.8 168 102-270 3-170 (189)
15 KOG0098|consensus 100.0 3.9E-32 8.5E-37 216.4 16.0 164 103-268 5-169 (216)
16 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-31 3.2E-36 223.2 20.0 180 106-286 1-190 (190)
17 cd04131 Rnd Rnd subfamily. Th 100.0 4.6E-31 1E-35 218.1 20.2 162 104-267 1-176 (178)
18 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.1E-30 2.4E-35 223.5 21.7 165 102-268 11-189 (232)
19 cd04176 Rap2 Rap2 subgroup. T 100.0 1E-30 2.2E-35 212.2 20.0 162 104-266 1-162 (163)
20 cd04134 Rho3 Rho3 subfamily. 100.0 1.1E-30 2.4E-35 217.8 20.7 175 106-286 2-189 (189)
21 KOG0394|consensus 100.0 4.1E-31 8.8E-36 210.2 16.7 169 103-271 8-182 (210)
22 smart00173 RAS Ras subfamily o 100.0 1.3E-30 2.8E-35 211.7 20.1 162 105-267 1-162 (164)
23 cd04122 Rab14 Rab14 subfamily. 100.0 1.9E-30 4.1E-35 211.6 20.9 163 104-268 2-165 (166)
24 cd01874 Cdc42 Cdc42 subfamily. 100.0 1.5E-30 3.2E-35 214.5 20.1 161 104-266 1-174 (175)
25 cd04138 H_N_K_Ras_like H-Ras/N 100.0 2.4E-30 5.1E-35 209.1 20.4 161 104-266 1-161 (162)
26 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.8E-30 6.2E-35 209.5 20.9 162 104-266 2-163 (164)
27 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 4.5E-30 9.7E-35 218.7 21.6 162 105-268 2-177 (222)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-30 6.8E-35 217.1 20.1 165 105-270 1-171 (201)
29 cd04132 Rho4_like Rho4-like su 100.0 3.8E-30 8.3E-35 213.8 19.8 180 105-286 1-187 (187)
30 cd04127 Rab27A Rab27a subfamil 100.0 5.1E-30 1.1E-34 211.6 20.4 165 103-268 3-178 (180)
31 KOG0079|consensus 100.0 3.1E-31 6.6E-36 203.5 12.0 162 104-268 8-170 (198)
32 cd01865 Rab3 Rab3 subfamily. 100.0 1E-29 2.2E-34 207.2 21.1 162 105-268 2-164 (165)
33 cd04140 ARHI_like ARHI subfami 100.0 8.1E-30 1.8E-34 207.7 20.6 160 105-265 2-163 (165)
34 cd01871 Rac1_like Rac1-like su 100.0 7E-30 1.5E-34 210.2 20.2 160 104-265 1-173 (174)
35 cd01867 Rab8_Rab10_Rab13_like 100.0 1.3E-29 2.8E-34 206.9 21.0 164 103-268 2-166 (167)
36 cd04119 RJL RJL (RabJ-Like) su 100.0 1.2E-29 2.6E-34 206.1 20.3 162 105-267 1-167 (168)
37 cd04109 Rab28 Rab28 subfamily. 100.0 1.4E-29 3E-34 215.4 21.4 163 105-268 1-167 (215)
38 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-29 3.4E-34 207.4 20.5 164 106-269 2-167 (170)
39 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.1E-29 4.5E-34 205.3 21.0 162 104-267 2-164 (166)
40 cd04125 RabA_like RabA-like su 100.0 1.9E-29 4.2E-34 209.9 21.2 179 105-285 1-187 (188)
41 cd04128 Spg1 Spg1p. Spg1p (se 100.0 2.1E-29 4.6E-34 208.9 19.9 165 105-271 1-170 (182)
42 cd04117 Rab15 Rab15 subfamily. 100.0 2.8E-29 6.2E-34 203.9 20.2 159 105-265 1-160 (161)
43 KOG0087|consensus 100.0 6.9E-30 1.5E-34 207.8 15.7 164 103-268 13-177 (222)
44 cd04177 RSR1 RSR1 subgroup. R 100.0 5.4E-29 1.2E-33 203.5 20.5 162 104-266 1-163 (168)
45 cd04110 Rab35 Rab35 subfamily. 100.0 6.6E-29 1.4E-33 208.8 21.5 165 103-270 5-170 (199)
46 PLN03071 GTP-binding nuclear p 100.0 5.7E-29 1.2E-33 212.2 20.7 163 102-269 11-174 (219)
47 cd04106 Rab23_lke Rab23-like s 100.0 5.1E-29 1.1E-33 201.8 19.4 158 105-265 1-161 (162)
48 cd04111 Rab39 Rab39 subfamily. 100.0 6.5E-29 1.4E-33 210.7 20.7 166 104-270 2-169 (211)
49 PF00071 Ras: Ras family; Int 100.0 4.9E-29 1.1E-33 202.0 19.0 160 106-267 1-161 (162)
50 cd01866 Rab2 Rab2 subfamily. 100.0 1.1E-28 2.3E-33 201.8 21.1 163 104-268 4-167 (168)
51 cd04142 RRP22 RRP22 subfamily. 100.0 5.9E-29 1.3E-33 208.8 19.8 181 105-286 1-198 (198)
52 cd04137 RheB Rheb (Ras Homolog 100.0 9.9E-29 2.1E-33 204.0 20.7 179 105-286 2-180 (180)
53 cd01864 Rab19 Rab19 subfamily. 100.0 1.1E-28 2.3E-33 200.9 20.6 161 103-265 2-164 (165)
54 cd01868 Rab11_like Rab11-like. 100.0 1.2E-28 2.6E-33 200.5 20.7 161 104-266 3-164 (165)
55 cd04112 Rab26 Rab26 subfamily. 100.0 1.2E-28 2.5E-33 205.9 20.9 164 105-270 1-166 (191)
56 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.2E-28 2.6E-33 201.9 20.5 164 103-267 1-169 (170)
57 cd04113 Rab4 Rab4 subfamily. 100.0 1.1E-28 2.4E-33 199.9 19.7 160 105-266 1-161 (161)
58 cd00877 Ran Ran (Ras-related n 100.0 1.4E-28 3E-33 201.0 19.9 161 105-270 1-162 (166)
59 smart00174 RHO Rho (Ras homolo 100.0 9.5E-29 2.1E-33 202.8 19.0 159 107-267 1-172 (174)
60 cd04126 Rab20 Rab20 subfamily. 100.0 9.6E-29 2.1E-33 210.3 19.7 159 105-268 1-191 (220)
61 cd04147 Ras_dva Ras-dva subfam 100.0 1E-28 2.3E-33 207.4 19.5 173 106-278 1-174 (198)
62 cd04143 Rhes_like Rhes_like su 100.0 1.6E-28 3.5E-33 212.6 21.0 165 105-270 1-174 (247)
63 cd04103 Centaurin_gamma Centau 100.0 1.3E-28 2.9E-33 199.5 19.0 155 105-265 1-157 (158)
64 KOG0093|consensus 100.0 2E-29 4.4E-34 193.3 13.2 167 103-271 20-187 (193)
65 cd04116 Rab9 Rab9 subfamily. 100.0 2.7E-28 5.9E-33 199.4 20.8 161 103-265 4-169 (170)
66 PLN03110 Rab GTPase; Provision 100.0 3E-28 6.5E-33 207.4 21.7 164 103-268 11-175 (216)
67 cd04146 RERG_RasL11_like RERG/ 100.0 1.2E-28 2.6E-33 200.7 18.2 161 106-267 1-164 (165)
68 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2.1E-28 4.5E-33 201.0 19.8 158 105-264 1-171 (173)
69 cd04139 RalA_RalB RalA/RalB su 100.0 3E-28 6.5E-33 197.3 20.4 163 105-268 1-163 (164)
70 cd04135 Tc10 TC10 subfamily. 100.0 2.1E-28 4.6E-33 200.7 19.7 160 105-266 1-173 (174)
71 cd04124 RabL2 RabL2 subfamily. 100.0 2.6E-28 5.6E-33 198.2 19.7 159 105-269 1-160 (161)
72 smart00175 RAB Rab subfamily o 100.0 3.6E-28 7.8E-33 196.9 20.3 162 105-268 1-163 (164)
73 cd01860 Rab5_related Rab5-rela 100.0 4.5E-28 9.7E-33 196.4 20.5 161 104-266 1-162 (163)
74 cd01861 Rab6 Rab6 subfamily. 100.0 3.9E-28 8.5E-33 196.4 19.9 160 105-266 1-161 (161)
75 KOG0091|consensus 100.0 4.4E-29 9.6E-34 194.7 13.5 165 103-268 7-174 (213)
76 cd01873 RhoBTB RhoBTB subfamil 100.0 3.3E-28 7.2E-33 203.7 19.8 158 104-265 2-194 (195)
77 cd04118 Rab24 Rab24 subfamily. 100.0 7.8E-28 1.7E-32 201.0 21.2 163 105-269 1-168 (193)
78 PLN03118 Rab family protein; P 100.0 1.2E-27 2.7E-32 202.8 21.9 166 103-270 13-180 (211)
79 PLN03108 Rab family protein; P 100.0 1.2E-27 2.5E-32 202.8 20.8 165 103-269 5-170 (210)
80 KOG0086|consensus 100.0 1.3E-28 2.8E-33 190.1 13.5 164 103-268 8-172 (214)
81 cd01863 Rab18 Rab18 subfamily. 100.0 1.5E-27 3.2E-32 193.1 20.5 159 105-265 1-160 (161)
82 smart00176 RAN Ran (Ras-relate 100.0 7.5E-28 1.6E-32 202.2 19.2 155 110-269 1-156 (200)
83 KOG0088|consensus 100.0 3.5E-29 7.7E-34 194.3 10.2 167 102-270 11-178 (218)
84 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.4E-27 3E-32 193.9 19.8 159 105-266 1-163 (164)
85 cd04148 RGK RGK subfamily. Th 100.0 1.6E-27 3.4E-32 203.6 20.3 161 105-268 1-164 (221)
86 cd04123 Rab21 Rab21 subfamily. 100.0 2.4E-27 5.1E-32 191.5 20.3 160 105-266 1-161 (162)
87 cd01862 Rab7 Rab7 subfamily. 100.0 3E-27 6.5E-32 193.2 20.8 164 105-269 1-169 (172)
88 KOG0395|consensus 100.0 1.1E-27 2.3E-32 200.0 18.3 165 103-268 2-166 (196)
89 cd01870 RhoA_like RhoA-like su 100.0 2.9E-27 6.2E-32 194.2 20.1 160 105-266 2-174 (175)
90 cd00876 Ras Ras family. The R 100.0 2.8E-27 6E-32 190.7 19.2 160 106-266 1-160 (160)
91 cd01892 Miro2 Miro2 subfamily. 100.0 2.3E-27 4.9E-32 194.4 18.7 163 102-268 2-167 (169)
92 KOG0095|consensus 100.0 4.5E-28 9.7E-33 186.5 13.4 161 104-266 7-168 (213)
93 cd04129 Rho2 Rho2 subfamily. 100.0 6.8E-27 1.5E-31 194.6 20.8 169 105-275 2-181 (187)
94 KOG0081|consensus 100.0 4.9E-29 1.1E-33 193.6 5.4 164 104-268 9-182 (219)
95 KOG0393|consensus 100.0 8.8E-28 1.9E-32 197.0 13.0 167 103-271 3-183 (198)
96 PLN00223 ADP-ribosylation fact 100.0 6.9E-27 1.5E-31 193.6 17.8 157 102-268 15-179 (181)
97 cd04149 Arf6 Arf6 subfamily. 100.0 5.6E-27 1.2E-31 191.9 16.8 156 102-264 7-167 (168)
98 cd04158 ARD1 ARD1 subfamily. 100.0 7.8E-27 1.7E-31 191.0 17.3 159 106-271 1-165 (169)
99 cd04114 Rab30 Rab30 subfamily. 99.9 3.5E-26 7.7E-31 186.5 20.7 162 103-266 6-168 (169)
100 cd00157 Rho Rho (Ras homology) 99.9 3.2E-26 6.9E-31 186.9 19.2 158 105-264 1-170 (171)
101 cd04154 Arl2 Arl2 subfamily. 99.9 1.4E-26 3E-31 190.1 17.1 158 100-264 10-172 (173)
102 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2.3E-26 5E-31 186.5 17.5 153 105-264 1-158 (159)
103 smart00177 ARF ARF-like small 99.9 1.3E-26 2.7E-31 191.0 15.9 157 103-266 12-173 (175)
104 KOG0083|consensus 99.9 2.6E-28 5.6E-33 184.5 5.3 160 109-270 2-163 (192)
105 cd00154 Rab Rab family. Rab G 99.9 6.3E-26 1.4E-30 181.7 18.9 158 105-264 1-159 (159)
106 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 3.9E-26 8.5E-31 189.4 17.6 162 103-268 2-171 (183)
107 PTZ00133 ADP-ribosylation fact 99.9 4.8E-26 1E-30 188.7 17.9 159 103-268 16-179 (182)
108 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 8.5E-27 1.8E-31 190.0 12.3 153 106-264 1-163 (164)
109 KOG0097|consensus 99.9 4.2E-26 9.1E-31 174.2 14.1 164 103-268 10-174 (215)
110 cd01893 Miro1 Miro1 subfamily. 99.9 2E-25 4.2E-30 182.1 18.5 161 105-268 1-165 (166)
111 cd04157 Arl6 Arl6 subfamily. 99.9 3.3E-26 7.2E-31 185.1 13.7 153 106-264 1-161 (162)
112 cd04161 Arl2l1_Arl13_like Arl2 99.9 7.2E-26 1.6E-30 185.1 13.9 155 106-264 1-166 (167)
113 PTZ00132 GTP-binding nuclear p 99.9 1.4E-24 2.9E-29 184.6 21.1 166 101-271 6-172 (215)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 3E-25 6.5E-30 182.5 16.4 155 103-264 14-173 (174)
115 cd00879 Sar1 Sar1 subfamily. 99.9 5.2E-25 1.1E-29 183.4 17.3 158 102-266 17-190 (190)
116 cd04151 Arl1 Arl1 subfamily. 99.9 1.1E-25 2.4E-30 181.9 12.7 152 106-264 1-157 (158)
117 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.8E-25 3.9E-30 180.7 13.2 153 106-264 1-159 (160)
118 cd04160 Arfrp1 Arfrp1 subfamil 99.9 6.5E-25 1.4E-29 178.7 15.9 153 106-264 1-166 (167)
119 smart00178 SAR Sar1p-like memb 99.9 3.2E-24 6.9E-29 178.1 17.4 157 102-265 15-183 (184)
120 cd04102 RabL3 RabL3 (Rab-like3 99.9 3.5E-24 7.6E-29 180.0 17.6 148 105-253 1-176 (202)
121 PF00025 Arf: ADP-ribosylation 99.9 5E-24 1.1E-28 175.5 17.9 158 102-266 12-175 (175)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2E-24 4.4E-29 174.3 14.7 152 106-264 1-157 (158)
123 cd01890 LepA LepA subfamily. 99.9 6.1E-24 1.3E-28 175.0 17.0 154 106-267 2-177 (179)
124 cd04159 Arl10_like Arl10-like 99.9 6.3E-24 1.4E-28 170.2 14.7 153 106-264 1-158 (159)
125 PTZ00099 rab6; Provisional 99.9 2.8E-23 6.1E-28 171.1 18.3 144 127-272 3-147 (176)
126 KOG0073|consensus 99.9 1.4E-23 3E-28 164.2 15.0 164 101-268 13-179 (185)
127 cd01897 NOG NOG1 is a nucleola 99.9 3.7E-23 8.1E-28 168.4 16.3 155 105-266 1-167 (168)
128 cd01898 Obg Obg subfamily. Th 99.9 4.8E-23 1E-27 168.0 16.2 157 106-265 2-169 (170)
129 cd04155 Arl3 Arl3 subfamily. 99.9 6.2E-23 1.3E-27 168.0 16.9 153 102-264 12-172 (173)
130 PRK12299 obgE GTPase CgtA; Rev 99.9 2E-22 4.4E-27 181.3 18.9 164 105-271 159-332 (335)
131 TIGR00487 IF-2 translation ini 99.9 8.3E-23 1.8E-27 195.7 17.1 207 36-265 28-248 (587)
132 KOG0070|consensus 99.9 4.2E-23 9E-28 165.5 12.5 166 100-269 13-180 (181)
133 KOG4252|consensus 99.9 8.2E-25 1.8E-29 173.4 2.5 165 102-269 18-183 (246)
134 PRK05306 infB translation init 99.9 4.3E-23 9.2E-28 202.1 15.1 202 36-265 239-450 (787)
135 PLN00023 GTP-binding protein; 99.9 2.6E-22 5.6E-27 177.2 17.6 143 99-241 16-188 (334)
136 TIGR00231 small_GTP small GTP- 99.9 7.8E-22 1.7E-26 157.3 18.3 157 104-263 1-160 (161)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 2.3E-22 5.1E-27 163.5 15.2 158 106-268 2-167 (168)
138 CHL00189 infB translation init 99.9 7.7E-23 1.7E-27 198.7 14.1 217 35-266 181-409 (742)
139 cd04171 SelB SelB subfamily. 99.9 3.7E-22 8E-27 161.5 15.5 154 106-264 2-163 (164)
140 cd01878 HflX HflX subfamily. 99.9 6.2E-22 1.4E-26 166.8 16.0 155 103-266 40-204 (204)
141 TIGR00436 era GTP-binding prot 99.9 1.4E-21 3E-26 171.8 17.6 156 106-271 2-168 (270)
142 TIGR02528 EutP ethanolamine ut 99.9 4.3E-22 9.3E-27 158.0 12.3 134 106-263 2-141 (142)
143 cd00882 Ras_like_GTPase Ras-li 99.9 2.5E-21 5.3E-26 152.7 16.6 155 109-263 1-156 (157)
144 cd01879 FeoB Ferrous iron tran 99.9 2.1E-21 4.5E-26 156.2 16.3 147 109-266 1-156 (158)
145 KOG0075|consensus 99.9 1.9E-22 4.1E-27 155.0 8.8 157 103-268 19-183 (186)
146 cd01891 TypA_BipA TypA (tyrosi 99.9 2.2E-21 4.9E-26 162.3 16.0 148 105-257 3-172 (194)
147 COG0532 InfB Translation initi 99.9 7.5E-22 1.6E-26 181.4 14.1 162 102-268 3-171 (509)
148 COG1100 GTPase SAR1 and relate 99.9 5.2E-21 1.1E-25 162.6 18.4 167 103-270 4-188 (219)
149 KOG1145|consensus 99.9 1.1E-21 2.4E-26 179.3 14.7 163 98-266 147-315 (683)
150 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.8E-21 1.3E-25 153.0 17.1 145 105-266 2-156 (157)
151 cd01894 EngA1 EngA1 subfamily. 99.9 3.1E-21 6.7E-26 154.8 15.0 146 108-266 1-157 (157)
152 PF02421 FeoB_N: Ferrous iron 99.9 1.1E-21 2.4E-26 157.0 12.2 147 105-262 1-156 (156)
153 PRK04213 GTP-binding protein; 99.9 1.3E-21 2.8E-26 164.4 13.2 155 103-271 8-196 (201)
154 cd01881 Obg_like The Obg-like 99.9 1.8E-21 3.8E-26 159.4 13.7 154 109-265 1-175 (176)
155 TIGR01393 lepA GTP-binding pro 99.9 5.2E-21 1.1E-25 184.1 18.9 165 105-277 4-190 (595)
156 PRK03003 GTP-binding protein D 99.9 2.6E-21 5.7E-26 182.5 16.6 159 103-268 210-383 (472)
157 TIGR02729 Obg_CgtA Obg family 99.9 8.7E-21 1.9E-25 170.6 17.7 159 105-266 158-328 (329)
158 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7E-21 1.5E-25 177.3 17.6 151 103-269 202-362 (442)
159 PRK15494 era GTPase Era; Provi 99.9 1.4E-20 3.1E-25 170.2 18.6 160 102-273 50-222 (339)
160 cd00881 GTP_translation_factor 99.9 7.8E-21 1.7E-25 157.2 15.2 155 106-267 1-187 (189)
161 PRK05291 trmE tRNA modificatio 99.9 6.2E-21 1.4E-25 178.5 16.2 148 103-268 214-371 (449)
162 TIGR03594 GTPase_EngA ribosome 99.9 2.2E-20 4.8E-25 174.6 19.3 159 102-268 170-345 (429)
163 TIGR03156 GTP_HflX GTP-binding 99.9 1.7E-20 3.6E-25 170.1 17.8 152 104-265 189-350 (351)
164 cd01889 SelB_euk SelB subfamil 99.9 5.5E-21 1.2E-25 159.7 13.3 159 105-268 1-187 (192)
165 KOG0071|consensus 99.9 5.7E-21 1.2E-25 145.8 11.8 162 103-268 16-179 (180)
166 cd01895 EngA2 EngA2 subfamily. 99.9 3.6E-20 7.9E-25 150.7 17.2 155 104-265 2-173 (174)
167 PRK03003 GTP-binding protein D 99.9 2.3E-20 5E-25 176.1 17.5 155 103-269 37-201 (472)
168 PF00009 GTP_EFTU: Elongation 99.8 2.7E-20 5.7E-25 155.1 14.9 160 103-267 2-187 (188)
169 KOG0076|consensus 99.8 2.7E-21 6E-26 152.8 8.0 164 103-269 16-189 (197)
170 PRK15467 ethanolamine utilizat 99.8 2.8E-20 6.1E-25 150.7 13.9 144 106-272 3-152 (158)
171 PRK12297 obgE GTPase CgtA; Rev 99.8 1.1E-19 2.5E-24 167.6 19.2 159 106-271 160-331 (424)
172 cd01888 eIF2_gamma eIF2-gamma 99.8 3.1E-20 6.7E-25 156.5 14.2 116 152-270 83-202 (203)
173 TIGR00491 aIF-2 translation in 99.8 3.7E-20 8.1E-25 177.2 15.9 159 103-266 3-215 (590)
174 PRK05433 GTP-binding protein L 99.8 1E-19 2.3E-24 175.3 18.6 166 104-277 7-194 (600)
175 cd04163 Era Era subfamily. Er 99.8 1.8E-19 3.8E-24 145.3 15.7 155 103-265 2-167 (168)
176 TIGR03594 GTPase_EngA ribosome 99.8 1.7E-19 3.7E-24 168.6 17.7 152 106-270 1-163 (429)
177 PRK00454 engB GTP-binding prot 99.8 2.6E-19 5.6E-24 149.5 16.9 162 100-268 20-195 (196)
178 PRK12296 obgE GTPase CgtA; Rev 99.8 1.4E-19 3E-24 169.1 16.7 162 105-270 160-343 (500)
179 cd04105 SR_beta Signal recogni 99.8 1.9E-19 4.2E-24 151.7 15.4 118 106-223 2-123 (203)
180 KOG3883|consensus 99.8 6.1E-19 1.3E-23 136.7 16.6 174 103-277 8-185 (198)
181 PF08477 Miro: Miro-like prote 99.8 1.2E-19 2.6E-24 139.5 12.1 115 106-220 1-119 (119)
182 PRK11058 GTPase HflX; Provisio 99.8 5E-19 1.1E-23 164.1 18.4 156 105-268 198-363 (426)
183 TIGR00475 selB selenocysteine- 99.8 3.2E-19 6.8E-24 171.6 17.0 160 105-271 1-170 (581)
184 PRK09518 bifunctional cytidyla 99.8 2.2E-19 4.8E-24 177.0 16.3 156 103-268 449-622 (712)
185 PRK00089 era GTPase Era; Revie 99.8 5.5E-19 1.2E-23 157.1 17.3 161 103-271 4-175 (292)
186 COG1159 Era GTPase [General fu 99.8 5.1E-19 1.1E-23 152.5 16.1 165 102-274 4-179 (298)
187 PRK00093 GTP-binding protein D 99.8 6.5E-19 1.4E-23 165.0 18.1 151 105-268 2-163 (435)
188 PRK12298 obgE GTPase CgtA; Rev 99.8 8.1E-19 1.8E-23 161.0 18.1 163 106-271 161-337 (390)
189 TIGR03598 GTPase_YsxC ribosome 99.8 2.4E-19 5.3E-24 148.0 12.7 150 99-256 13-179 (179)
190 PRK00093 GTP-binding protein D 99.8 5E-19 1.1E-23 165.8 16.1 156 103-267 172-344 (435)
191 PRK10218 GTP-binding protein; 99.8 1.3E-18 2.8E-23 167.2 18.5 169 103-276 4-204 (607)
192 KOG1673|consensus 99.8 3.8E-19 8.3E-24 138.1 12.0 169 100-270 16-189 (205)
193 KOG0462|consensus 99.8 5E-19 1.1E-23 162.1 13.9 172 102-278 58-246 (650)
194 COG1160 Predicted GTPases [Gen 99.8 1.1E-18 2.3E-23 158.3 15.8 150 105-267 4-165 (444)
195 COG1160 Predicted GTPases [Gen 99.8 1.6E-18 3.4E-23 157.3 16.3 159 103-268 177-352 (444)
196 TIGR01394 TypA_BipA GTP-bindin 99.8 1.7E-18 3.7E-23 166.5 17.1 165 106-277 3-201 (594)
197 COG0486 ThdF Predicted GTPase 99.8 1.8E-18 4E-23 157.2 15.9 154 102-269 215-378 (454)
198 PRK09518 bifunctional cytidyla 99.8 4.4E-18 9.6E-23 167.8 19.6 155 103-269 274-438 (712)
199 TIGR00483 EF-1_alpha translati 99.8 1.2E-18 2.5E-23 162.8 14.7 153 102-257 5-197 (426)
200 PRK12317 elongation factor 1-a 99.8 1.6E-18 3.4E-23 161.9 15.4 151 103-258 5-196 (425)
201 PRK09554 feoB ferrous iron tra 99.8 4.9E-18 1.1E-22 167.4 19.0 154 103-267 2-168 (772)
202 COG2229 Predicted GTPase [Gene 99.8 7.6E-18 1.7E-22 135.1 16.6 158 99-265 5-176 (187)
203 PRK04004 translation initiatio 99.8 2.7E-18 5.8E-23 165.0 16.6 160 101-265 3-216 (586)
204 TIGR00437 feoB ferrous iron tr 99.8 2.3E-18 5E-23 165.9 16.0 145 111-266 1-154 (591)
205 TIGR03680 eif2g_arch translati 99.8 1.7E-18 3.6E-23 160.5 14.5 174 102-278 2-207 (406)
206 cd00880 Era_like Era (E. coli 99.8 3.8E-18 8.2E-23 136.0 13.1 151 109-265 1-162 (163)
207 cd04166 CysN_ATPS CysN_ATPS su 99.8 2.7E-18 5.8E-23 145.3 12.4 147 106-258 1-185 (208)
208 PRK10512 selenocysteinyl-tRNA- 99.8 8.7E-18 1.9E-22 162.3 16.6 167 106-279 2-177 (614)
209 cd01884 EF_Tu EF-Tu subfamily. 99.8 9E-18 1.9E-22 140.5 14.5 145 104-255 2-171 (195)
210 PRK12736 elongation factor Tu; 99.8 1.3E-17 2.7E-22 154.1 16.3 170 102-278 10-212 (394)
211 PRK04000 translation initiatio 99.8 1.2E-17 2.6E-22 154.9 15.9 173 102-278 7-212 (411)
212 cd01896 DRG The developmentall 99.8 3.8E-17 8.2E-22 140.5 17.0 152 106-267 2-226 (233)
213 cd04168 TetM_like Tet(M)-like 99.8 3.9E-17 8.4E-22 140.7 16.6 110 106-222 1-129 (237)
214 COG0481 LepA Membrane GTPase L 99.8 7.5E-18 1.6E-22 152.2 12.1 166 105-278 10-197 (603)
215 KOG0074|consensus 99.8 5.3E-18 1.1E-22 129.8 9.3 159 100-267 13-179 (185)
216 KOG0072|consensus 99.7 1.9E-18 4.2E-23 132.6 6.7 162 103-269 17-181 (182)
217 cd01885 EF2 EF2 (for archaea a 99.7 4.2E-17 9.1E-22 138.9 15.5 158 106-268 2-221 (222)
218 TIGR00485 EF-Tu translation el 99.7 2.3E-17 5E-22 152.4 15.1 170 102-278 10-212 (394)
219 PRK12735 elongation factor Tu; 99.7 3.7E-17 8.1E-22 151.1 16.2 170 102-278 10-214 (396)
220 KOG0096|consensus 99.7 5.6E-18 1.2E-22 135.9 9.2 166 103-273 9-175 (216)
221 COG0218 Predicted GTPase [Gene 99.7 7.6E-17 1.6E-21 132.1 15.3 159 100-268 20-198 (200)
222 cd01876 YihA_EngB The YihA (En 99.7 6.8E-17 1.5E-21 130.5 14.8 153 106-266 1-170 (170)
223 cd01883 EF1_alpha Eukaryotic e 99.7 1.1E-17 2.5E-22 142.6 10.3 145 106-256 1-194 (219)
224 cd04165 GTPBP1_like GTPBP1-lik 99.7 1.6E-16 3.5E-21 135.7 15.9 152 106-264 1-220 (224)
225 CHL00071 tufA elongation facto 99.7 1.3E-16 2.8E-21 148.1 15.7 170 102-278 10-222 (409)
226 cd04167 Snu114p Snu114p subfam 99.7 2.1E-16 4.6E-21 134.1 15.2 157 106-267 2-211 (213)
227 PLN03127 Elongation factor Tu; 99.7 3.4E-16 7.3E-21 146.2 16.6 171 101-278 58-263 (447)
228 COG0370 FeoB Fe2+ transport sy 99.7 2E-16 4.3E-21 149.7 15.0 158 103-271 2-168 (653)
229 PRK00049 elongation factor Tu; 99.7 3.5E-16 7.6E-21 144.5 16.4 170 102-278 10-214 (396)
230 KOG1423|consensus 99.7 4.1E-16 8.8E-21 134.2 15.4 168 101-274 69-278 (379)
231 PRK05124 cysN sulfate adenylyl 99.7 2.5E-16 5.4E-21 148.3 15.1 151 102-258 25-216 (474)
232 TIGR02034 CysN sulfate adenyly 99.7 2.2E-16 4.7E-21 146.3 14.2 147 105-257 1-187 (406)
233 PTZ00327 eukaryotic translatio 99.7 3E-16 6.4E-21 146.5 15.0 174 101-278 31-244 (460)
234 PLN03126 Elongation factor Tu; 99.7 4.2E-16 9.1E-21 146.4 16.0 146 101-253 78-248 (478)
235 PF10662 PduV-EutP: Ethanolami 99.7 9E-16 1.9E-20 120.4 12.1 135 106-263 3-142 (143)
236 KOG4423|consensus 99.7 4.9E-18 1.1E-22 135.8 -1.1 168 103-270 24-197 (229)
237 PLN00043 elongation factor 1-a 99.7 1.1E-15 2.3E-20 143.0 14.1 149 102-257 5-203 (447)
238 cd04169 RF3 RF3 subfamily. Pe 99.7 3.6E-15 7.8E-20 130.6 15.7 133 105-245 3-156 (267)
239 cd01886 EF-G Elongation factor 99.7 1.2E-15 2.5E-20 133.9 12.4 111 106-223 1-130 (270)
240 PTZ00141 elongation factor 1- 99.6 2E-15 4.4E-20 141.1 14.3 150 102-257 5-203 (446)
241 PRK00741 prfC peptide chain re 99.6 5.5E-15 1.2E-19 140.5 17.0 115 103-222 9-144 (526)
242 KOG1489|consensus 99.6 2.5E-15 5.4E-20 130.1 12.8 155 105-264 197-364 (366)
243 PRK13351 elongation factor G; 99.6 1.1E-15 2.5E-20 150.5 12.2 114 103-223 7-139 (687)
244 PRK05506 bifunctional sulfate 99.6 2.5E-15 5.5E-20 146.7 14.5 150 102-257 22-211 (632)
245 COG1084 Predicted GTPase [Gene 99.6 5.6E-15 1.2E-19 128.8 14.8 159 102-268 166-337 (346)
246 KOG0077|consensus 99.6 6.4E-16 1.4E-20 121.6 7.3 154 103-266 19-192 (193)
247 cd04104 p47_IIGP_like p47 (47- 99.6 7.2E-15 1.6E-19 123.3 13.4 158 104-270 1-187 (197)
248 cd04170 EF-G_bact Elongation f 99.6 3.8E-15 8.2E-20 130.8 12.0 150 106-265 1-171 (268)
249 COG1217 TypA Predicted membran 99.6 9.6E-15 2.1E-19 132.0 14.2 169 105-278 6-206 (603)
250 COG2262 HflX GTPases [General 99.6 2E-14 4.4E-19 128.9 16.1 157 103-269 191-358 (411)
251 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 7.2E-15 1.6E-19 125.3 12.5 177 106-284 1-194 (232)
252 TIGR00484 EF-G translation elo 99.6 8.1E-15 1.7E-19 144.4 14.6 113 103-222 9-140 (689)
253 PRK12739 elongation factor G; 99.6 2.5E-14 5.4E-19 140.9 17.4 114 103-223 7-139 (691)
254 cd01899 Ygr210 Ygr210 subfamil 99.6 3.4E-14 7.3E-19 127.1 16.2 161 107-272 1-274 (318)
255 TIGR00503 prfC peptide chain r 99.6 2.9E-14 6.3E-19 135.7 16.0 115 103-222 10-145 (527)
256 PF01926 MMR_HSR1: 50S ribosom 99.6 5E-14 1.1E-18 107.9 13.4 105 106-218 1-116 (116)
257 KOG1707|consensus 99.6 8.6E-15 1.9E-19 135.5 10.0 165 100-266 5-174 (625)
258 KOG1191|consensus 99.6 1.7E-14 3.8E-19 131.3 11.1 164 103-268 267-451 (531)
259 COG1163 DRG Predicted GTPase [ 99.6 9.2E-14 2E-18 120.9 15.0 154 104-267 63-289 (365)
260 PRK00007 elongation factor G; 99.6 4.9E-14 1.1E-18 138.8 14.9 113 103-222 9-140 (693)
261 PF09439 SRPRB: Signal recogni 99.6 4.9E-15 1.1E-19 121.2 6.0 117 104-223 3-126 (181)
262 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 3.2E-13 7E-18 113.1 15.8 162 105-270 1-187 (196)
263 PRK14845 translation initiatio 99.5 1.3E-13 2.8E-18 138.7 15.7 146 116-266 473-672 (1049)
264 COG0536 Obg Predicted GTPase [ 99.5 1.2E-13 2.6E-18 121.1 13.4 163 106-270 161-336 (369)
265 COG5256 TEF1 Translation elong 99.5 6.2E-14 1.3E-18 125.7 11.8 150 102-257 5-201 (428)
266 COG3596 Predicted GTPase [Gene 99.5 1.1E-13 2.4E-18 118.2 12.0 163 102-269 37-224 (296)
267 cd01850 CDC_Septin CDC/Septin. 99.5 1.6E-13 3.5E-18 120.8 13.6 142 104-251 4-186 (276)
268 PRK09602 translation-associate 99.5 7.9E-13 1.7E-17 121.7 16.7 162 105-271 2-275 (396)
269 COG5257 GCD11 Translation init 99.5 1.4E-13 3E-18 119.4 10.7 173 102-277 8-212 (415)
270 PRK12740 elongation factor G; 99.5 2.6E-13 5.6E-18 133.6 13.7 106 110-222 1-125 (668)
271 KOG0090|consensus 99.5 4.2E-13 9E-18 110.3 12.0 157 105-266 39-238 (238)
272 KOG1144|consensus 99.5 2.4E-13 5.1E-18 128.6 11.5 162 101-267 472-687 (1064)
273 KOG0461|consensus 99.4 2.4E-12 5.3E-17 112.7 14.4 170 103-277 6-203 (522)
274 PRK07560 elongation factor EF- 99.4 2.5E-12 5.4E-17 127.5 15.6 115 103-222 19-152 (731)
275 PRK09866 hypothetical protein; 99.4 9.5E-12 2.1E-16 118.0 17.4 109 153-265 231-351 (741)
276 TIGR00490 aEF-2 translation el 99.4 1.1E-12 2.4E-17 129.7 11.4 116 103-223 18-152 (720)
277 COG3276 SelB Selenocysteine-sp 99.4 4.9E-12 1.1E-16 114.4 10.6 166 106-279 2-174 (447)
278 PRK13768 GTPase; Provisional 99.3 4.3E-12 9.2E-17 110.5 9.8 113 153-267 98-247 (253)
279 COG0050 TufB GTPases - transla 99.3 8.4E-12 1.8E-16 107.3 11.1 174 101-279 9-213 (394)
280 PLN00116 translation elongatio 99.3 9E-12 2E-16 125.1 12.3 117 101-222 16-163 (843)
281 COG2895 CysN GTPases - Sulfate 99.3 9.1E-12 2E-16 109.5 10.5 149 103-257 5-193 (431)
282 COG4917 EutP Ethanolamine util 99.3 7.8E-12 1.7E-16 94.3 8.4 137 106-265 3-144 (148)
283 KOG1490|consensus 99.3 9.5E-12 2.1E-16 113.7 9.7 162 102-268 166-342 (620)
284 KOG0458|consensus 99.3 2.6E-11 5.7E-16 112.7 12.4 157 99-258 172-373 (603)
285 cd00066 G-alpha G protein alph 99.3 4.1E-11 9E-16 107.6 13.2 118 152-269 161-313 (317)
286 COG4108 PrfC Peptide chain rel 99.3 3.9E-11 8.5E-16 108.2 12.3 115 103-222 11-146 (528)
287 PTZ00416 elongation factor 2; 99.3 1.7E-11 3.6E-16 123.0 10.6 115 103-222 18-157 (836)
288 TIGR00157 ribosome small subun 99.3 7E-11 1.5E-15 102.3 12.8 96 163-264 24-120 (245)
289 PTZ00258 GTP-binding protein; 99.2 1.3E-10 2.8E-15 106.3 13.8 85 102-186 19-126 (390)
290 TIGR00101 ureG urease accessor 99.2 2E-10 4.3E-15 96.4 13.9 101 152-267 92-196 (199)
291 KOG1532|consensus 99.2 7E-11 1.5E-15 100.8 10.9 167 101-268 16-265 (366)
292 cd01882 BMS1 Bms1. Bms1 is an 99.2 1.7E-10 3.6E-15 98.8 13.3 139 103-253 38-182 (225)
293 smart00275 G_alpha G protein a 99.2 2.4E-10 5.2E-15 103.6 14.8 117 153-269 185-336 (342)
294 COG0480 FusA Translation elong 99.2 9E-11 1.9E-15 114.3 12.5 118 102-225 8-144 (697)
295 smart00010 small_GTPase Small 99.2 9.1E-11 2E-15 90.1 10.1 114 105-256 1-115 (124)
296 KOG0705|consensus 99.2 2.4E-11 5.1E-16 112.0 7.2 182 84-271 10-193 (749)
297 TIGR00991 3a0901s02IAP34 GTP-b 99.2 4.4E-10 9.6E-15 99.2 14.8 119 102-222 36-166 (313)
298 PRK09435 membrane ATPase/prote 99.2 3.5E-10 7.6E-15 101.5 14.2 105 152-268 149-261 (332)
299 cd01853 Toc34_like Toc34-like 99.2 3.7E-10 8E-15 97.9 13.9 118 103-222 30-162 (249)
300 COG5258 GTPBP1 GTPase [General 99.2 3E-10 6.5E-15 101.0 13.1 163 100-268 113-339 (527)
301 PF04548 AIG1: AIG1 family; I 99.2 5E-10 1.1E-14 95.0 13.9 162 105-270 1-189 (212)
302 TIGR00073 hypB hydrogenase acc 99.2 2.6E-10 5.6E-15 96.4 11.6 151 103-266 21-206 (207)
303 KOG0460|consensus 99.2 1.6E-10 3.5E-15 101.2 10.0 174 100-277 50-255 (449)
304 PRK09601 GTP-binding protein Y 99.2 6.7E-10 1.4E-14 100.5 14.2 82 105-186 3-107 (364)
305 KOG0468|consensus 99.1 2.4E-10 5.1E-15 107.5 10.7 119 99-222 123-262 (971)
306 KOG3905|consensus 99.1 1E-09 2.2E-14 95.8 13.0 168 103-272 51-295 (473)
307 PF03029 ATP_bind_1: Conserved 99.1 1.8E-11 3.9E-16 105.4 1.9 112 153-265 92-235 (238)
308 TIGR02836 spore_IV_A stage IV 99.1 1.9E-09 4.2E-14 97.8 14.7 156 103-265 16-235 (492)
309 COG0378 HypB Ni2+-binding GTPa 99.1 1.1E-09 2.3E-14 89.6 10.9 79 176-266 118-200 (202)
310 cd01900 YchF YchF subfamily. 99.1 7E-10 1.5E-14 97.1 10.6 80 107-186 1-103 (274)
311 KOG3886|consensus 99.1 2.8E-10 6.1E-15 94.8 7.4 159 104-266 4-177 (295)
312 PF00350 Dynamin_N: Dynamin fa 99.1 9.1E-10 2E-14 89.5 10.0 109 107-219 1-168 (168)
313 COG1703 ArgK Putative periplas 99.1 6.5E-10 1.4E-14 96.4 9.1 154 103-268 50-255 (323)
314 TIGR00750 lao LAO/AO transport 99.1 8.2E-10 1.8E-14 98.6 10.0 104 152-267 127-238 (300)
315 PF05783 DLIC: Dynein light in 99.0 4E-09 8.6E-14 98.8 14.2 167 103-272 24-269 (472)
316 KOG1707|consensus 99.0 8.5E-09 1.8E-13 96.3 15.3 162 100-268 421-584 (625)
317 KOG0466|consensus 99.0 4E-10 8.6E-15 97.5 5.1 169 101-276 35-250 (466)
318 PF03308 ArgK: ArgK protein; 99.0 3.4E-10 7.3E-15 96.8 4.4 150 103-266 28-229 (266)
319 KOG0082|consensus 99.0 3.3E-09 7.2E-14 94.9 10.3 129 141-271 186-348 (354)
320 smart00053 DYNc Dynamin, GTPas 99.0 9.7E-09 2.1E-13 88.3 12.6 68 152-223 125-206 (240)
321 COG0012 Predicted GTPase, prob 99.0 1.5E-08 3.2E-13 90.8 13.7 84 104-187 2-109 (372)
322 PF05049 IIGP: Interferon-indu 98.9 2.9E-09 6.4E-14 96.4 7.6 158 103-270 34-221 (376)
323 PRK10463 hydrogenase nickel in 98.9 4.7E-08 1E-12 85.8 13.6 55 210-265 231-287 (290)
324 cd01859 MJ1464 MJ1464. This f 98.9 1.1E-08 2.3E-13 82.4 8.4 96 165-268 2-97 (156)
325 PF00735 Septin: Septin; Inte 98.8 4.8E-08 1E-12 86.2 12.8 113 104-222 4-155 (281)
326 cd01855 YqeH YqeH. YqeH is an 98.8 1.7E-08 3.7E-13 84.0 9.3 95 164-267 23-125 (190)
327 TIGR00993 3a0901s04IAP86 chlor 98.8 9E-08 1.9E-12 91.7 13.2 119 103-223 117-250 (763)
328 KOG1486|consensus 98.8 1.9E-07 4.1E-12 79.1 13.6 155 103-267 61-288 (364)
329 KOG0410|consensus 98.7 1.3E-08 2.8E-13 89.0 5.6 151 104-268 178-342 (410)
330 cd01854 YjeQ_engC YjeQ/EngC. 98.7 1.6E-07 3.4E-12 83.4 12.3 88 170-264 73-161 (287)
331 KOG0465|consensus 98.7 3.8E-08 8.2E-13 92.3 8.6 115 103-222 38-169 (721)
332 KOG0467|consensus 98.7 3.9E-08 8.4E-13 94.2 8.5 115 102-221 7-136 (887)
333 KOG2486|consensus 98.7 1.9E-08 4E-13 86.3 5.7 158 100-264 132-313 (320)
334 PRK00098 GTPase RsgA; Reviewed 98.7 2.8E-07 6.1E-12 82.2 12.4 87 172-264 77-164 (298)
335 KOG1143|consensus 98.7 1.5E-07 3.2E-12 83.9 9.7 155 103-262 166-383 (591)
336 KOG3887|consensus 98.6 8E-08 1.7E-12 80.9 7.2 163 105-270 28-206 (347)
337 PRK12288 GTPase RsgA; Reviewed 98.6 1.5E-07 3.2E-12 85.5 9.5 90 172-265 117-206 (347)
338 PRK12289 GTPase RsgA; Reviewed 98.6 2E-07 4.3E-12 84.7 9.7 93 166-265 80-173 (352)
339 KOG0464|consensus 98.6 8E-09 1.7E-13 92.8 0.0 130 103-242 36-184 (753)
340 PF00503 G-alpha: G-protein al 98.6 2.9E-07 6.2E-12 85.2 9.7 122 143-266 228-389 (389)
341 KOG0459|consensus 98.6 1.1E-07 2.5E-12 85.3 6.0 158 99-260 74-279 (501)
342 KOG0463|consensus 98.5 8.2E-07 1.8E-11 79.3 10.7 152 103-262 132-353 (641)
343 KOG1954|consensus 98.5 8.9E-07 1.9E-11 78.9 10.2 116 103-222 57-224 (532)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.2E-07 7E-12 72.6 6.6 52 106-162 85-138 (141)
345 TIGR03597 GTPase_YqeH ribosome 98.5 5.8E-07 1.3E-11 82.2 9.1 95 162-265 50-151 (360)
346 COG5019 CDC3 Septin family pro 98.5 1.6E-06 3.6E-11 77.4 11.0 114 103-222 22-175 (373)
347 KOG0448|consensus 98.4 1.9E-06 4.2E-11 82.1 11.2 145 101-251 106-310 (749)
348 cd01858 NGP_1 NGP-1. Autoanti 98.4 7.8E-07 1.7E-11 71.7 7.1 92 171-267 4-95 (157)
349 cd01856 YlqF YlqF. Proteins o 98.4 1.1E-06 2.4E-11 71.8 7.5 99 159-267 2-101 (171)
350 cd01849 YlqF_related_GTPase Yl 98.4 1.5E-06 3.3E-11 69.8 8.0 84 177-266 1-84 (155)
351 cd01858 NGP_1 NGP-1. Autoanti 98.4 1.1E-06 2.4E-11 70.8 6.9 55 103-162 101-157 (157)
352 cd04178 Nucleostemin_like Nucl 98.3 1.3E-06 2.8E-11 71.6 6.8 55 103-162 116-172 (172)
353 TIGR03596 GTPase_YlqF ribosome 98.3 1.7E-06 3.6E-11 76.4 8.0 101 159-269 4-105 (276)
354 KOG1547|consensus 98.3 4.5E-06 9.7E-11 70.5 9.5 142 104-251 46-227 (336)
355 cd01856 YlqF YlqF. Proteins o 98.3 1.8E-06 3.9E-11 70.6 6.9 56 102-162 113-170 (171)
356 TIGR00092 GTP-binding protein 98.3 2.6E-06 5.6E-11 77.4 8.3 83 105-187 3-109 (368)
357 KOG2655|consensus 98.3 9.7E-06 2.1E-10 73.0 11.4 114 104-222 21-171 (366)
358 KOG1487|consensus 98.3 5.6E-06 1.2E-10 70.6 9.2 152 105-267 60-281 (358)
359 COG1618 Predicted nucleotide k 98.3 6.3E-05 1.4E-09 60.0 14.2 148 103-268 4-177 (179)
360 cd01855 YqeH YqeH. YqeH is an 98.2 1.3E-06 2.7E-11 72.7 4.3 54 103-161 126-189 (190)
361 PRK09563 rbgA GTPase YlqF; Rev 98.2 3.9E-06 8.4E-11 74.5 7.5 102 158-269 6-108 (287)
362 TIGR03596 GTPase_YlqF ribosome 98.2 4E-06 8.7E-11 74.0 7.4 56 102-162 116-173 (276)
363 cd01859 MJ1464 MJ1464. This f 98.2 5.2E-06 1.1E-10 66.6 7.1 56 103-162 100-156 (156)
364 cd01857 HSR1_MMR1 HSR1/MMR1. 98.2 3.9E-06 8.5E-11 66.3 6.2 79 170-254 6-84 (141)
365 PRK09563 rbgA GTPase YlqF; Rev 98.2 6.1E-06 1.3E-10 73.2 7.8 57 102-163 119-177 (287)
366 COG5192 BMS1 GTP-binding prote 98.1 2.4E-05 5.1E-10 73.4 11.1 110 102-223 67-177 (1077)
367 KOG1491|consensus 98.1 6.2E-06 1.3E-10 72.9 6.5 86 102-187 18-126 (391)
368 PF09547 Spore_IV_A: Stage IV 98.1 7.1E-05 1.5E-09 68.4 13.4 155 104-265 17-235 (492)
369 cd01849 YlqF_related_GTPase Yl 98.1 8.9E-06 1.9E-10 65.3 7.0 55 103-162 99-155 (155)
370 KOG0469|consensus 98.1 7.2E-06 1.6E-10 75.8 7.1 113 105-222 20-163 (842)
371 KOG0085|consensus 98.1 2.5E-06 5.3E-11 71.6 3.6 120 151-270 198-352 (359)
372 PRK10416 signal recognition pa 98.1 5.3E-05 1.1E-09 68.1 11.7 94 152-259 197-302 (318)
373 PRK13796 GTPase YqeH; Provisio 98.0 3.4E-05 7.5E-10 70.7 10.0 94 164-266 58-158 (365)
374 COG1161 Predicted GTPases [Gen 98.0 1.2E-05 2.6E-10 72.5 6.7 57 102-163 130-188 (322)
375 TIGR00064 ftsY signal recognit 98.0 3.8E-05 8.3E-10 67.5 9.7 94 152-259 155-260 (272)
376 PF03193 DUF258: Protein of un 98.0 6.7E-06 1.5E-10 66.2 4.3 59 105-166 36-101 (161)
377 PRK01889 GTPase RsgA; Reviewed 98.0 2.9E-05 6.4E-10 70.9 8.9 84 172-263 109-193 (356)
378 TIGR01425 SRP54_euk signal rec 98.0 5.7E-05 1.2E-09 70.2 10.7 94 151-258 182-281 (429)
379 TIGR03348 VI_IcmF type VI secr 97.9 3.3E-05 7.2E-10 80.8 9.3 113 105-222 112-256 (1169)
380 cd01851 GBP Guanylate-binding 97.9 5E-05 1.1E-09 64.9 8.5 86 103-188 6-104 (224)
381 KOG0447|consensus 97.9 0.00022 4.7E-09 66.9 12.9 69 153-224 413-494 (980)
382 PRK12288 GTPase RsgA; Reviewed 97.9 1.5E-05 3.2E-10 72.5 4.9 58 106-166 207-271 (347)
383 PRK13695 putative NTPase; Prov 97.9 0.00026 5.6E-09 57.9 11.7 78 172-267 93-173 (174)
384 cd03112 CobW_like The function 97.9 7.3E-05 1.6E-09 60.3 8.2 63 152-221 87-158 (158)
385 PRK14974 cell division protein 97.9 6.6E-05 1.4E-09 67.9 8.7 94 152-259 223-322 (336)
386 PRK12289 GTPase RsgA; Reviewed 97.8 3.1E-05 6.6E-10 70.5 6.1 55 106-165 174-237 (352)
387 PRK14722 flhF flagellar biosyn 97.8 0.00011 2.3E-09 67.3 8.9 146 103-257 136-322 (374)
388 TIGR03597 GTPase_YqeH ribosome 97.8 3.2E-05 6.9E-10 70.9 5.6 55 105-164 155-216 (360)
389 PRK12727 flagellar biosynthesi 97.8 0.0002 4.3E-09 67.9 10.8 139 103-255 349-523 (559)
390 COG1162 Predicted GTPases [Gen 97.8 4.1E-05 8.8E-10 67.4 5.8 58 106-166 166-230 (301)
391 KOG0099|consensus 97.8 6.2E-05 1.4E-09 64.4 6.6 71 152-222 202-282 (379)
392 TIGR00157 ribosome small subun 97.8 4.5E-05 9.7E-10 66.1 6.0 56 105-166 121-185 (245)
393 PRK13796 GTPase YqeH; Provisio 97.8 4.2E-05 9.1E-10 70.2 5.5 54 105-163 161-221 (365)
394 cd01854 YjeQ_engC YjeQ/EngC. 97.6 5E-05 1.1E-09 67.4 4.3 57 105-166 162-227 (287)
395 PRK00771 signal recognition pa 97.6 0.00039 8.5E-09 65.1 10.1 90 153-257 177-273 (437)
396 PRK14721 flhF flagellar biosyn 97.6 0.0004 8.8E-09 64.5 9.7 137 103-255 190-365 (420)
397 cd03110 Fer4_NifH_child This p 97.6 0.0019 4.2E-08 52.8 12.9 86 150-246 91-176 (179)
398 COG1162 Predicted GTPases [Gen 97.6 0.00047 1E-08 60.8 9.3 94 167-265 71-165 (301)
399 KOG1424|consensus 97.5 0.00011 2.4E-09 68.4 5.1 55 104-163 314-370 (562)
400 cd03114 ArgK-like The function 97.5 0.00034 7.4E-09 55.8 7.2 58 151-220 91-148 (148)
401 PRK00098 GTPase RsgA; Reviewed 97.5 0.0002 4.3E-09 64.0 6.4 57 104-165 164-229 (298)
402 COG0523 Putative GTPases (G3E 97.5 0.0018 4E-08 58.2 12.4 145 106-260 3-194 (323)
403 COG1419 FlhF Flagellar GTP-bin 97.5 0.00054 1.2E-08 62.7 8.7 150 104-268 203-395 (407)
404 PRK11889 flhF flagellar biosyn 97.5 0.00037 8.1E-09 63.9 7.6 140 104-257 241-418 (436)
405 PF03266 NTPase_1: NTPase; In 97.5 0.00036 7.9E-09 56.9 6.9 135 106-255 1-163 (168)
406 PF00448 SRP54: SRP54-type pro 97.5 0.00024 5.2E-09 59.4 5.9 92 152-257 84-181 (196)
407 PRK12726 flagellar biosynthesi 97.4 0.00072 1.6E-08 61.8 8.2 140 103-257 205-383 (407)
408 cd03115 SRP The signal recogni 97.4 0.0014 3.1E-08 53.4 9.0 83 152-246 83-171 (173)
409 KOG3859|consensus 97.3 0.00034 7.4E-09 60.5 5.3 115 103-222 41-189 (406)
410 PRK06995 flhF flagellar biosyn 97.3 0.00073 1.6E-08 63.9 7.6 139 104-258 256-434 (484)
411 PRK14723 flhF flagellar biosyn 97.2 0.0014 3E-08 65.0 8.9 143 105-258 186-366 (767)
412 PF02492 cobW: CobW/HypB/UreG, 97.2 0.00052 1.1E-08 56.4 4.8 65 152-222 85-154 (178)
413 PRK12723 flagellar biosynthesi 97.2 0.0088 1.9E-07 55.2 13.2 93 152-258 255-355 (388)
414 PRK10867 signal recognition pa 97.2 0.0018 3.9E-08 60.5 8.8 91 152-257 184-281 (433)
415 COG3640 CooC CO dehydrogenase 97.2 0.0045 9.7E-08 52.6 10.2 62 153-222 135-198 (255)
416 TIGR00959 ffh signal recogniti 97.2 0.00055 1.2E-08 63.9 5.3 92 152-257 183-280 (428)
417 KOG2485|consensus 97.2 0.00066 1.4E-08 59.7 5.2 61 102-163 141-207 (335)
418 cd01983 Fer4_NifH The Fer4_Nif 97.2 0.0025 5.4E-08 45.8 7.7 97 107-217 2-99 (99)
419 PF06858 NOG1: Nucleolar GTP-b 97.1 0.0021 4.6E-08 42.1 6.0 45 174-220 12-58 (58)
420 PRK06731 flhF flagellar biosyn 97.1 0.0043 9.3E-08 54.5 9.6 140 103-256 74-251 (270)
421 PRK05703 flhF flagellar biosyn 97.1 0.0046 9.9E-08 57.9 10.3 90 152-255 300-396 (424)
422 PRK11537 putative GTP-binding 97.0 0.014 3E-07 52.6 12.7 65 152-223 91-164 (318)
423 COG3523 IcmF Type VI protein s 97.0 0.001 2.2E-08 68.6 6.0 112 107-222 128-269 (1188)
424 KOG2484|consensus 97.0 0.00074 1.6E-08 61.2 3.8 58 102-163 250-308 (435)
425 KOG1534|consensus 96.9 0.0019 4E-08 53.9 5.5 23 104-126 3-25 (273)
426 PRK12724 flagellar biosynthesi 96.9 0.0077 1.7E-07 55.9 9.8 138 104-255 223-398 (432)
427 cd00009 AAA The AAA+ (ATPases 96.8 0.0063 1.4E-07 46.9 7.4 25 105-129 20-44 (151)
428 KOG2423|consensus 96.7 0.00071 1.5E-08 61.3 1.8 82 100-189 303-388 (572)
429 KOG4273|consensus 96.7 0.022 4.7E-07 48.8 10.2 111 104-222 4-122 (418)
430 PF05621 TniB: Bacterial TniB 96.6 0.0099 2.1E-07 52.6 8.1 104 102-218 59-189 (302)
431 cd02038 FleN-like FleN is a me 96.6 0.0054 1.2E-07 48.2 6.0 106 109-222 5-110 (139)
432 cd02117 NifH_like This family 96.6 0.039 8.4E-07 46.5 11.6 90 151-246 116-207 (212)
433 cd02036 MinD Bacterial cell di 96.6 0.046 1E-06 44.3 11.7 84 153-245 64-147 (179)
434 TIGR02475 CobW cobalamin biosy 96.6 0.054 1.2E-06 49.3 12.8 23 105-127 5-27 (341)
435 PF13207 AAA_17: AAA domain; P 96.5 0.0019 4.1E-08 49.2 2.8 22 106-127 1-22 (121)
436 cd02042 ParA ParA and ParB of 96.5 0.0087 1.9E-07 44.2 6.3 82 107-199 2-84 (104)
437 COG1161 Predicted GTPases [Gen 96.5 0.0056 1.2E-07 55.2 6.0 96 156-260 14-110 (322)
438 PF13555 AAA_29: P-loop contai 96.5 0.0028 6.1E-08 42.5 3.0 21 106-126 25-45 (62)
439 cd03111 CpaE_like This protein 96.5 0.0068 1.5E-07 45.3 5.4 100 110-218 6-106 (106)
440 cd04178 Nucleostemin_like Nucl 96.5 0.0052 1.1E-07 50.3 5.1 43 177-222 1-43 (172)
441 cd03222 ABC_RNaseL_inhibitor T 96.3 0.045 9.7E-07 45.0 9.8 24 104-127 25-48 (177)
442 PRK08118 topology modulation p 96.3 0.0034 7.3E-08 51.1 3.0 22 106-127 3-24 (167)
443 COG0541 Ffh Signal recognition 96.2 0.038 8.3E-07 51.1 9.7 84 152-248 183-273 (451)
444 PRK01889 GTPase RsgA; Reviewed 96.2 0.0045 9.7E-08 56.7 3.6 23 105-127 196-218 (356)
445 PRK07261 topology modulation p 96.2 0.004 8.6E-08 50.9 3.0 21 106-126 2-22 (171)
446 PRK14738 gmk guanylate kinase; 96.2 0.0063 1.4E-07 51.3 4.3 25 103-127 12-36 (206)
447 PF03215 Rad17: Rad17 cell cyc 96.2 0.063 1.4E-06 51.6 11.4 89 177-266 133-229 (519)
448 COG0563 Adk Adenylate kinase a 96.2 0.0045 9.8E-08 50.9 3.1 22 106-127 2-23 (178)
449 PF13521 AAA_28: AAA domain; P 96.1 0.004 8.6E-08 50.2 2.6 22 106-127 1-22 (163)
450 PF13671 AAA_33: AAA domain; P 96.1 0.0043 9.2E-08 48.6 2.7 20 107-126 2-21 (143)
451 cd02019 NK Nucleoside/nucleoti 96.1 0.0054 1.2E-07 42.1 2.8 21 107-127 2-22 (69)
452 PRK04195 replication factor C 96.0 0.061 1.3E-06 51.3 10.7 23 105-127 40-62 (482)
453 COG1126 GlnQ ABC-type polar am 96.0 0.0055 1.2E-07 51.5 3.0 25 103-127 27-51 (240)
454 PRK14737 gmk guanylate kinase; 96.0 0.0062 1.3E-07 50.5 3.2 23 105-127 5-27 (186)
455 PF05729 NACHT: NACHT domain 96.0 0.028 6.2E-07 44.7 7.0 21 107-127 3-23 (166)
456 PF00005 ABC_tran: ABC transpo 96.0 0.0059 1.3E-07 47.4 2.9 23 105-127 12-34 (137)
457 COG1116 TauB ABC-type nitrate/ 96.0 0.0059 1.3E-07 52.3 3.0 21 106-126 31-51 (248)
458 KOG1533|consensus 95.9 0.005 1.1E-07 52.3 2.4 21 105-125 3-23 (290)
459 PRK14530 adenylate kinase; Pro 95.9 0.0061 1.3E-07 51.6 3.1 23 104-126 3-25 (215)
460 COG0552 FtsY Signal recognitio 95.9 0.056 1.2E-06 48.4 9.0 143 102-259 137-327 (340)
461 TIGR00235 udk uridine kinase. 95.9 0.0078 1.7E-07 50.6 3.6 25 102-126 4-28 (207)
462 COG1136 SalX ABC-type antimicr 95.9 0.0064 1.4E-07 51.7 3.0 22 105-126 32-53 (226)
463 KOG0780|consensus 95.8 0.0053 1.1E-07 55.7 2.3 66 150-222 182-253 (483)
464 PRK08233 hypothetical protein; 95.8 0.0088 1.9E-07 48.8 3.5 25 103-127 2-26 (182)
465 PF13238 AAA_18: AAA domain; P 95.7 0.0082 1.8E-07 45.8 2.7 21 107-127 1-21 (129)
466 COG0194 Gmk Guanylate kinase [ 95.7 0.0061 1.3E-07 50.0 1.8 25 104-128 4-28 (191)
467 smart00382 AAA ATPases associa 95.7 0.011 2.3E-07 45.1 3.2 26 105-130 3-28 (148)
468 cd03216 ABC_Carb_Monos_I This 95.6 0.05 1.1E-06 43.9 7.2 24 104-127 26-49 (163)
469 cd00071 GMPK Guanosine monopho 95.6 0.01 2.2E-07 46.6 2.9 21 107-127 2-22 (137)
470 PF03205 MobB: Molybdopterin g 95.6 0.0094 2E-07 47.0 2.8 22 106-127 2-23 (140)
471 PF00004 AAA: ATPase family as 95.6 0.0098 2.1E-07 45.5 2.8 21 107-127 1-21 (132)
472 cd02040 NifH NifH gene encodes 95.6 0.16 3.4E-06 44.3 10.8 67 151-218 116-184 (270)
473 PRK10078 ribose 1,5-bisphospho 95.6 0.0098 2.1E-07 49.1 3.0 22 106-127 4-25 (186)
474 PF11111 CENP-M: Centromere pr 95.6 1 2.2E-05 36.7 14.6 143 100-267 11-153 (176)
475 PRK06217 hypothetical protein; 95.6 0.011 2.4E-07 48.6 3.2 23 105-127 2-24 (183)
476 TIGR00150 HI0065_YjeE ATPase, 95.5 0.039 8.4E-07 43.1 5.9 24 105-128 23-46 (133)
477 cd00820 PEPCK_HprK Phosphoenol 95.5 0.011 2.4E-07 44.3 2.7 21 105-125 16-36 (107)
478 PRK05480 uridine/cytidine kina 95.5 0.014 3E-07 49.1 3.7 25 103-127 5-29 (209)
479 TIGR02322 phosphon_PhnN phosph 95.5 0.011 2.3E-07 48.4 2.8 22 106-127 3-24 (179)
480 cd01120 RecA-like_NTPases RecA 95.5 0.036 7.9E-07 43.7 5.7 21 107-127 2-22 (165)
481 KOG2423|consensus 95.4 0.074 1.6E-06 48.6 7.9 101 168-273 203-306 (572)
482 TIGR03263 guanyl_kin guanylate 95.4 0.013 2.8E-07 47.9 3.0 22 106-127 3-24 (180)
483 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3.1E-07 47.8 3.2 23 104-126 3-25 (188)
484 COG3840 ThiQ ABC-type thiamine 95.3 0.015 3.2E-07 47.8 3.0 23 104-126 25-47 (231)
485 PRK10751 molybdopterin-guanine 95.3 0.02 4.3E-07 46.8 3.7 25 103-127 5-29 (173)
486 cd02023 UMPK Uridine monophosp 95.3 0.013 2.9E-07 48.7 2.8 21 107-127 2-22 (198)
487 PF02367 UPF0079: Uncharacteri 95.3 0.052 1.1E-06 41.8 5.8 24 104-127 15-38 (123)
488 cd03238 ABC_UvrA The excision 95.3 0.015 3.3E-07 47.7 3.1 23 103-125 20-42 (176)
489 PRK13851 type IV secretion sys 95.3 0.057 1.2E-06 49.1 7.0 26 103-128 161-186 (344)
490 PRK03839 putative kinase; Prov 95.3 0.015 3.2E-07 47.7 3.0 22 106-127 2-23 (180)
491 cd03255 ABC_MJ0796_Lo1CDE_FtsE 95.3 0.016 3.4E-07 49.0 3.2 24 104-127 30-53 (218)
492 COG1120 FepC ABC-type cobalami 95.3 0.014 3.1E-07 50.6 3.0 22 105-126 29-50 (258)
493 cd01130 VirB11-like_ATPase Typ 95.3 0.016 3.5E-07 47.9 3.2 24 104-127 25-48 (186)
494 cd03225 ABC_cobalt_CbiO_domain 95.2 0.017 3.7E-07 48.6 3.2 23 105-127 28-50 (211)
495 COG3638 ABC-type phosphate/pho 95.2 0.016 3.4E-07 49.4 2.9 21 106-126 32-52 (258)
496 TIGR00960 3a0501s02 Type II (G 95.2 0.017 3.7E-07 48.8 3.2 23 105-127 30-52 (216)
497 PRK10646 ADP-binding protein; 95.2 0.085 1.8E-06 42.2 6.9 22 106-127 30-51 (153)
498 PF04665 Pox_A32: Poxvirus A32 95.2 0.018 3.8E-07 49.6 3.2 25 103-127 12-36 (241)
499 TIGR01166 cbiO cobalt transpor 95.2 0.017 3.6E-07 47.8 3.0 23 105-127 19-41 (190)
500 cd03226 ABC_cobalt_CbiO_domain 95.2 0.018 3.9E-07 48.2 3.2 23 105-127 27-49 (205)
No 1
>KOG0084|consensus
Probab=100.00 E-value=5.1e-35 Score=235.48 Aligned_cols=169 Identities=37% Similarity=0.639 Sum_probs=158.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+.+||+++|+.|||||+|+.||.++.|...+..|++ |+..+.+.++++.+.+++|||+||++|+.+...||++||++|+
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~ 87 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF 87 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence 679999999999999999999999999999999998 8888999999999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNEMFA 260 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~l~~ 260 (286)
|||+++.+||+.+..|+.++.++ ..+++|.++|+||+|+. +.+.++.++++.++..++.+ ++++||+++.++++.|.
T Consensus 88 vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~-~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~ 165 (205)
T KOG0084|consen 88 VYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLT-EKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFL 165 (205)
T ss_pred EEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccH-hheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHH
Confidence 99999999999999999999996 45689999999999998 78888999999999999999 99999999999999999
Q ss_pred HHHHHhhcCCCCc
Q psy10504 261 EIVREMNFNPEKD 273 (286)
Q Consensus 261 ~i~~~i~~~~~~~ 273 (286)
.+...++......
T Consensus 166 ~la~~lk~~~~~~ 178 (205)
T KOG0084|consen 166 TLAKELKQRKGLH 178 (205)
T ss_pred HHHHHHHHhcccC
Confidence 9999887655433
No 2
>KOG0092|consensus
Probab=100.00 E-value=3.1e-34 Score=230.13 Aligned_cols=171 Identities=39% Similarity=0.614 Sum_probs=158.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...+||+++|+.+||||||+-|+..+.|.+...+|++ .+..+.+.+++..++|.+|||+||++|.++.+.||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 4679999999999999999999999999998888887 677788999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||+++.+||..++.|...+.+... +++-+.+||||+|+. +.+.+..++.+.+++..+..|+++||++|.|++++|.
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~-~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~ 160 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLL-ERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ 160 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhh-hcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence 99999999999999999999998544 778788899999998 6789999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCcC
Q psy10504 261 EIVREMNFNPEKDN 274 (286)
Q Consensus 261 ~i~~~i~~~~~~~~ 274 (286)
.|.+.++....+..
T Consensus 161 ~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 161 AIAEKLPCSDPQER 174 (200)
T ss_pred HHHHhccCcccccc
Confidence 99999987665544
No 3
>KOG0094|consensus
Probab=100.00 E-value=3.2e-34 Score=230.06 Aligned_cols=174 Identities=33% Similarity=0.542 Sum_probs=162.8
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
..+.+.+||+++|+.+||||||+++++.+.|...|.+|++ ++...++.+.+..+.+++|||+||++|+.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 3455779999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++|+|||++|..+|++..+|++.+...+...++-+++|+||.||. +.+++..++.+..+++++..|+++||+.|.||++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~-dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLS-DKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEccccccc-chhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 999999999999999999999999998776678889999999999 7788999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCc
Q psy10504 258 MFAEIVREMNFNPEKD 273 (286)
Q Consensus 258 l~~~i~~~i~~~~~~~ 273 (286)
+|..|...+++....+
T Consensus 176 lFrrIaa~l~~~~~~~ 191 (221)
T KOG0094|consen 176 LFRRIAAALPGMEVLE 191 (221)
T ss_pred HHHHHHHhccCccccc
Confidence 9999999988765433
No 4
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=1.6e-32 Score=229.40 Aligned_cols=177 Identities=31% Similarity=0.520 Sum_probs=151.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..+||+++|+.+||||||+.++..+.|...+.+|+++.....+.+++..+.+++|||+|+++|..++..+++++|++|+|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 46899999999999999999999999999999999877666777899999999999999999999999999999999999
Q ss_pred EECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeC
Q psy10504 183 YSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASA 249 (286)
Q Consensus 183 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa 249 (286)
||++++.+++++. .|...+... .+++|+++|+||.|+.+.. +.+...+.+.+++..+ +++++|||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 9999999999997 577767653 3589999999999996332 2356678888998888 68999999
Q ss_pred CCCCcHHHHHHHHHHHhhcCCCCcCCCceecCccccC
Q psy10504 250 KNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL 286 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~~~~~~~~~~~~~~~c~~~ 286 (286)
++|.|++++|+++++.+......+ ..+.|++|
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~~~~-----~~~~c~~~ 191 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPTPIK-----DTKSCVLL 191 (191)
T ss_pred CCCCCHHHHHHHHHHHHhcccccc-----CCCCceeC
Confidence 999999999999999886643222 12348775
No 5
>KOG0078|consensus
Probab=100.00 E-value=7.9e-33 Score=225.88 Aligned_cols=167 Identities=35% Similarity=0.573 Sum_probs=157.9
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
.....+||+++|+++||||+++.++..+.|...+..|++ ++...++..++..+.+++|||+||++|+.+...|++.|++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 345789999999999999999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|||+++..+|+++..|+..+..+ ..+++|+++|+||+|+. ..+.++.+.++.++.++|++|+|+||++|.||++.
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~-~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLE-EKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccc-ccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 99999999999999999999999985 44599999999999998 68999999999999999999999999999999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|-.+++.+..
T Consensus 166 F~~La~~i~~ 175 (207)
T KOG0078|consen 166 FLSLARDILQ 175 (207)
T ss_pred HHHHHHHHHh
Confidence 9999998874
No 6
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=3.4e-32 Score=223.63 Aligned_cols=167 Identities=47% Similarity=0.871 Sum_probs=151.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|.+|+|||||++++..+.+...+.+|.++.....+.+++..+.+++|||||+++|..++..+++.+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 47999999999999999999999999888888988777777888998889999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|...+......+++|+++|+||+|+. ..+.++..+.+.+++..++++++|||++|.|++++|++++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~ 160 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE-SQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV 160 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh-hcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999988888776555689999999999997 4556778888889988999999999999999999999999
Q ss_pred HHhhcCCC
Q psy10504 264 REMNFNPE 271 (286)
Q Consensus 264 ~~i~~~~~ 271 (286)
+.+....+
T Consensus 161 ~~~~~~~~ 168 (172)
T cd04141 161 REIRRKES 168 (172)
T ss_pred HHHHHhcc
Confidence 98876443
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.4e-32 Score=225.51 Aligned_cols=163 Identities=29% Similarity=0.478 Sum_probs=146.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|+.+||||||+.++..+.+...+.++.+ ++....+.+++..+.+++|||+|+++|..++..+++++|++|+
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 459999999999999999999999988877776654 4445667888988999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++++..|+..+... .++.|++||+||.|+. ..+.+...+.+.+++..++++++|||++|.|++++|++
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~-~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLA-FKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccch-hccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999764 3689999999999997 45667888899999999999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
+++.+..
T Consensus 162 l~~~i~~ 168 (189)
T cd04121 162 LARIVLM 168 (189)
T ss_pred HHHHHHH
Confidence 9987754
No 8
>KOG0080|consensus
Probab=100.00 E-value=1.4e-32 Score=213.72 Aligned_cols=169 Identities=34% Similarity=0.535 Sum_probs=159.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...+||+++|.+|+|||||+.+|..+.|.+..+.|++ ++..+.+.+++..+++.+|||+||++|+.+.+.||+.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 4679999999999999999999999999988888776 888899999999999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++.+++|..+..|+.++..+...+++-.++|+||+|.. .++.++.++...+++.+++.|+++||++.+|+...|+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDke-s~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe 167 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKE-SERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE 167 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccch-hcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence 999999999999999999999999888899999999999987 6889999999999999999999999999999999999
Q ss_pred HHHHHhhcCCC
Q psy10504 261 EIVREMNFNPE 271 (286)
Q Consensus 261 ~i~~~i~~~~~ 271 (286)
.++.+|.+.|.
T Consensus 168 elveKIi~tp~ 178 (209)
T KOG0080|consen 168 ELVEKIIETPS 178 (209)
T ss_pred HHHHHHhcCcc
Confidence 99999877653
No 9
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=8.1e-32 Score=222.03 Aligned_cols=162 Identities=30% Similarity=0.536 Sum_probs=146.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++++|||||+.++..+.|...+.+|+++.....+.+++..+.+++|||+|+++|..++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999999999999999987777778889999999999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC---------CCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504 185 LTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ---------REVPTLDGQALAQSWGC-PFIEASAKNKT 253 (286)
Q Consensus 185 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 253 (286)
++++.+++++ ..|+..+.... ++.|+++|+||+|+.+.. +.+..++.+.+++..++ ++++|||++|.
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 9999999998 68999887643 589999999999996322 34778889999999997 59999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++|+.+++.+.+
T Consensus 160 nV~~~F~~~~~~~~~ 174 (176)
T cd04133 160 NVKAVFDAAIKVVLQ 174 (176)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999997754
No 10
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=9.5e-32 Score=226.15 Aligned_cols=162 Identities=36% Similarity=0.624 Sum_probs=145.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+.|+++|+.|||||||++++..+.|...+.+|++ ++....+.+++..+.+++|||+|+++|+.++..|++++|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 3689999999999999999999999988888876 556677888998899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~i 262 (286)
|++++.+++++..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++.. ++.+++|||++|.|++++|+++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~-~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE-TDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 999999999999999887664 34579999999999997 46667777888888775 7899999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
++.+..
T Consensus 159 ~~~~~~ 164 (202)
T cd04120 159 VDDILK 164 (202)
T ss_pred HHHHHH
Confidence 998754
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=1.3e-31 Score=222.06 Aligned_cols=163 Identities=28% Similarity=0.466 Sum_probs=147.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
...+||+++|++++|||||++++..+.+...+.||+++.....+.+++..+.+.+|||+|+++|..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 35689999999999999999999999999999999987777788899999999999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504 182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS 248 (286)
Q Consensus 182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS 248 (286)
|||++++.+++++ ..|...+... .++.|+++|+||+|+.+. .+.+..++++.+++..++ +|++||
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~S 160 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 160 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECC
Confidence 9999999999997 7899888774 358999999999999632 345888999999999995 899999
Q ss_pred CCCCCc-HHHHHHHHHHHh
Q psy10504 249 AKNKTN-VNEMFAEIVREM 266 (286)
Q Consensus 249 a~~~~g-v~~l~~~i~~~i 266 (286)
|++|.| ++++|+.+++.+
T Consensus 161 Ak~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 161 ALQSENSVRDIFHVATLAC 179 (182)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 999998 999999998854
No 12
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.3e-31 Score=217.08 Aligned_cols=161 Identities=67% Similarity=1.102 Sum_probs=145.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|||||||++++..+.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++++|||
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999999998888888887777788889988889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
++++.+++.+..|+..+......+++|+++|+||+|+. ..+.....+...+++.++.+++++||++|.|++++|+++++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 160 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLE-DERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR 160 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999999998876656689999999999997 34455666677788888899999999999999999999987
Q ss_pred Hh
Q psy10504 265 EM 266 (286)
Q Consensus 265 ~i 266 (286)
.+
T Consensus 161 ~~ 162 (163)
T cd04136 161 QI 162 (163)
T ss_pred hc
Confidence 64
No 13
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.4e-31 Score=217.62 Aligned_cols=163 Identities=65% Similarity=1.069 Sum_probs=146.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
++||+++|.+|||||||++++..+.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++++||
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888889988777778888998888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++++..|+..+......++.|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~ 159 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch-hccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999998876566789999999999997 3444556667778888889999999999999999999999
Q ss_pred HHhh
Q psy10504 264 REMN 267 (286)
Q Consensus 264 ~~i~ 267 (286)
+.+.
T Consensus 160 ~~l~ 163 (164)
T cd04175 160 RQIN 163 (164)
T ss_pred HHhh
Confidence 8764
No 14
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=1.7e-31 Score=222.66 Aligned_cols=168 Identities=52% Similarity=0.920 Sum_probs=150.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+..+||+++|++|+|||||++++..+.+...+.+|.+......+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 35699999999999999999999999998888888887777788889999899999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLD-SERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999988876555689999999999986 44555666777788888899999999999999999999
Q ss_pred HHHHhhcCC
Q psy10504 262 IVREMNFNP 270 (286)
Q Consensus 262 i~~~i~~~~ 270 (286)
+++.+....
T Consensus 162 l~~~l~~~~ 170 (189)
T PTZ00369 162 LVREIRKYL 170 (189)
T ss_pred HHHHHHHHh
Confidence 998876543
No 15
>KOG0098|consensus
Probab=100.00 E-value=3.9e-32 Score=216.41 Aligned_cols=164 Identities=34% Similarity=0.534 Sum_probs=154.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+|++++|+.|||||+|+.++++..|.+.+..|++ ++....+.+++.++++++|||+||+.|++.+..||+.+.+++|
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL 84 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL 84 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence 568999999999999999999999999999998887 8888999999999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++..++|..+..|+.++..+ ..++.-+++++||+|+. ..+.++.++.+.++++.|..++++||++++|+++.|..
T Consensus 85 Vydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~-~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~n 162 (216)
T KOG0098|consen 85 VYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLE-ARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFIN 162 (216)
T ss_pred EEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhh-ccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999985 45799999999999998 77899999999999999999999999999999999998
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
+...+-+
T Consensus 163 ta~~Iy~ 169 (216)
T KOG0098|consen 163 TAKEIYR 169 (216)
T ss_pred HHHHHHH
Confidence 8876643
No 16
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.5e-31 Score=223.21 Aligned_cols=180 Identities=48% Similarity=0.818 Sum_probs=152.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|.+|||||||+++|..+.+...+.+|+++.......+++..+.+++|||||+++|..++..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 58999999999999999999999988888888877777778888888899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
+++.+++.+..|+..+..... .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~ 159 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV-YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV 159 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999988876543 3578999999999997 4455666677788888889999999999999999999999
Q ss_pred HHhhcCCCCc--------CCCceecCccccC
Q psy10504 264 REMNFNPEKD--------NASFCWCSSCSIL 286 (286)
Q Consensus 264 ~~i~~~~~~~--------~~~~~~~~~c~~~ 286 (286)
+.+....... .........|++|
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 160 RALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred HHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 9865433222 2223444667765
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=4.6e-31 Score=218.07 Aligned_cols=162 Identities=27% Similarity=0.454 Sum_probs=145.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
++||+++|++|+|||||++++..+.+...+.+|+++.....+.+++..+.+++|||+|++.|..++..+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999988777777888999999999999999999999999999999999999
Q ss_pred ECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeCC
Q psy10504 184 SLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASAK 250 (286)
Q Consensus 184 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa~ 250 (286)
|++++.+++++ ..|...+... .++.|+++|+||+|+.+. .+.+..++.+.+++..++ +|++|||+
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 99999999996 7898888774 358999999999999631 245788899999999996 79999999
Q ss_pred CCCc-HHHHHHHHHHHhh
Q psy10504 251 NKTN-VNEMFAEIVREMN 267 (286)
Q Consensus 251 ~~~g-v~~l~~~i~~~i~ 267 (286)
+|+| ++++|+.+++...
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998543
No 18
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.98 E-value=1.1e-30 Score=223.53 Aligned_cols=165 Identities=24% Similarity=0.389 Sum_probs=148.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
...+||+++|+++||||||+++|..+.|...+.+|++......+.+++..+.+.+|||+|++.|..++..+++++|++++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 35689999999999999999999999999999999887777778889999999999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504 182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS 248 (286)
Q Consensus 182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS 248 (286)
|||++++.+++.+ ..|+..+.... ++.|+++|+||+|+.+. .+.+..++++.+++..++ +|++||
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtS 168 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECS 168 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEcc
Confidence 9999999999984 78999888643 57899999999999632 356788899999999998 699999
Q ss_pred CCCCC-cHHHHHHHHHHHhhc
Q psy10504 249 AKNKT-NVNEMFAEIVREMNF 268 (286)
Q Consensus 249 a~~~~-gv~~l~~~i~~~i~~ 268 (286)
|++|. |++++|+.++..+.+
T Consensus 169 Aktg~~~V~e~F~~~~~~~~~ 189 (232)
T cd04174 169 AFTSEKSIHSIFRSASLLCLN 189 (232)
T ss_pred CCcCCcCHHHHHHHHHHHHHH
Confidence 99998 899999999887654
No 19
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.98 E-value=1e-30 Score=212.22 Aligned_cols=162 Identities=78% Similarity=1.216 Sum_probs=145.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
++||+++|++|+|||||++++..+.+...+.+|..+.....+..++..+.+++|||||+++|..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 37999999999999999999999999888888887777778888998888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++++..|+..+.......++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLE-SEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV 159 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence 999999999999999988876555689999999999996 3445556667778888889999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 160 ~~l 162 (163)
T cd04176 160 RQM 162 (163)
T ss_pred Hhc
Confidence 765
No 20
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.98 E-value=1.1e-30 Score=217.79 Aligned_cols=175 Identities=31% Similarity=0.454 Sum_probs=147.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|++|+|||||++++.++.+...+.+|..+.....+..++..+.+++|||+|+++|..++..+++.+|++++|||+
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv 81 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSV 81 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEEC
Confidence 79999999999999999999999988888888776666677788888899999999999999999999999999999999
Q ss_pred CCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHhcC-CCEEEEeCCCC
Q psy10504 186 TNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR-----------EVPTLDGQALAQSWG-CPFIEASAKNK 252 (286)
Q Consensus 186 ~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~~-~~~~~vSa~~~ 252 (286)
+++.+++.+. .|+..+... .++.|+++|+||+|+.+... .+...+...+++..+ +++++|||++|
T Consensus 82 ~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 82 DSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 9999999986 588777753 35899999999999973321 244556667777776 78999999999
Q ss_pred CcHHHHHHHHHHHhhcCCCCcCCCceecCccccC
Q psy10504 253 TNVNEMFAEIVREMNFNPEKDNASFCWCSSCSIL 286 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~~~~~~~~~~~~~c~~~ 286 (286)
.|++++|+++++.+.....+.. ..+-|.||
T Consensus 160 ~~v~e~f~~l~~~~~~~~~~~~----~~~~~~~~ 189 (189)
T cd04134 160 RGVNEAFTEAARVALNVRPPHP----HSSACTIA 189 (189)
T ss_pred CCHHHHHHHHHHHHhcccccCc----CCCcceeC
Confidence 9999999999999876554333 44667776
No 21
>KOG0394|consensus
Probab=99.97 E-value=4.1e-31 Score=210.23 Aligned_cols=169 Identities=35% Similarity=0.599 Sum_probs=155.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.-+||+++|++|+|||||++++...+|...+..|++ ++..+.+.+++..+.+++|||+||++|.++.-.+|+++|..++
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 458999999999999999999999999999999988 8889999999999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCC---CCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGS---ERVPILLVANKLDLAS-HQREVPTLDGQALAQSWG-CPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~ 256 (286)
|||++++.+++.+..|..++...... ..-|+||++||+|+.+ ..+.++...++..++..| +||+++|||...|++
T Consensus 88 vydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 88 VYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNVD 167 (210)
T ss_pred EeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccHH
Confidence 99999999999999999999876532 3579999999999985 348899999999999888 999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q psy10504 257 EMFAEIVREMNFNPE 271 (286)
Q Consensus 257 ~l~~~i~~~i~~~~~ 271 (286)
+.|+.+.+.+.+...
T Consensus 168 ~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 168 EAFEEIARRALANED 182 (210)
T ss_pred HHHHHHHHHHHhccc
Confidence 999999999877664
No 22
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.3e-30 Score=211.72 Aligned_cols=162 Identities=57% Similarity=1.043 Sum_probs=146.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|||||||++++.++.+...+.+++++........++..+.+.+|||||++++..++..+++.+|++++|||
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999999998888888887777788888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
++++.+++.+..|...+.......++|+++|+||+|+. ..+.....+...+++..+.+++++||++|.|++++|++|++
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 159 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLE-SERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence 99999999999999888776655689999999999997 34555667777888888899999999999999999999998
Q ss_pred Hhh
Q psy10504 265 EMN 267 (286)
Q Consensus 265 ~i~ 267 (286)
.+.
T Consensus 160 ~~~ 162 (164)
T smart00173 160 EIR 162 (164)
T ss_pred HHh
Confidence 765
No 23
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.97 E-value=1.9e-30 Score=211.61 Aligned_cols=163 Identities=33% Similarity=0.483 Sum_probs=144.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+||+++|++|+|||||++++..+.+...+++|++. +....+..++..+.+.+|||||+++|..++..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 379999999999999999999999998888887763 3345677888888999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||++++.+++.+..|+..+... ..++.|+++|+||+|+. ..+.....+...+++..++++++|||++|.|++++|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l 159 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLE-AQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLET 159 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999888664 34578999999999997 455667778888888889999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
++.+.+
T Consensus 160 ~~~~~~ 165 (166)
T cd04122 160 AKKIYQ 165 (166)
T ss_pred HHHHhh
Confidence 987743
No 24
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=1.5e-30 Score=214.47 Aligned_cols=161 Identities=29% Similarity=0.531 Sum_probs=142.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|++|+|||||++++..+.+...+.||+++.....+..++..+.+++|||+|+++|..++..+++++|++|+||
T Consensus 1 ~~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 1 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 37999999999999999999999999989999998777767788898899999999999999999999999999999999
Q ss_pred ECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504 184 SLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEASAK 250 (286)
Q Consensus 184 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vSa~ 250 (286)
|++++.+++++. .|...+... .+++|+++|+||+|+.+. .+.+..++++.+++..+ +.+++|||+
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 999999999997 487777653 357999999999998633 14567778888888887 689999999
Q ss_pred CCCcHHHHHHHHHHHh
Q psy10504 251 NKTNVNEMFAEIVREM 266 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i 266 (286)
+|.|++++|+.++..+
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998753
No 25
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=2.4e-30 Score=209.06 Aligned_cols=161 Identities=51% Similarity=0.936 Sum_probs=144.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|++|+|||||++++.++.+...+.+|.++.....+.+++..+.+.+|||||+++|..++..+++.+|++++||
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999999999888889888777777888888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|+++..+++++..|+..+.......++|+++|+||+|+.+ +.....+...+.+..+++++++||++|.|++++|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA--RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc--ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999998888765556899999999999973 44556667778888889999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04138 159 REI 161 (162)
T ss_pred HHh
Confidence 754
No 26
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=2.8e-30 Score=209.45 Aligned_cols=162 Identities=47% Similarity=0.858 Sum_probs=144.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|++|+|||||++++.++.+...+.+++++.......+++..+.+.+|||||++++..++..+++.+|++++||
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 48999999999999999999999988888888888777777788888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+.......+.|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++|+
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 160 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE-HQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV 160 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc-ccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence 999999999999999988876556689999999999997 3444566677788888889999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 161 ~~~ 163 (164)
T cd04145 161 RVI 163 (164)
T ss_pred Hhh
Confidence 764
No 27
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=4.5e-30 Score=218.67 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=142.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||+++|..+.+...+.||+.+.....+.+++..+.+.+|||+|++.|..++..+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 79999999999999999999999999999999987777788899999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504 185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKN 251 (286)
Q Consensus 185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 251 (286)
++++++++.+.. |...+.. ..++.|+++|+||+|+.+.. ..+..++.+.+++..++ +|++|||++
T Consensus 82 is~~~Sf~~i~~~w~~~~~~--~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE--FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999954 5555443 34689999999999996321 13677789999999995 899999999
Q ss_pred CCc-HHHHHHHHHHHhhc
Q psy10504 252 KTN-VNEMFAEIVREMNF 268 (286)
Q Consensus 252 ~~g-v~~l~~~i~~~i~~ 268 (286)
+.+ ++++|+........
T Consensus 160 ~~~~V~~~F~~~~~~~~~ 177 (222)
T cd04173 160 SERSVRDVFHVATVASLG 177 (222)
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 885 99999999886543
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.1e-30 Score=217.09 Aligned_cols=165 Identities=32% Similarity=0.500 Sum_probs=144.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+||+++|++|||||||+++|.++.+...+.+|.+ ++....+.++ +..+.+.+|||||+++|..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 5899999999999999999999998888888876 4445667777 7788899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l 258 (286)
||++++.+++.+..|+..+.... ...++|+++|+||+|+. ..+.....+.+.+++..+ .+++++||++|.|++++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~ 159 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK-KRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEA 159 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHH
Confidence 99999999999999988876532 23578999999999997 345667788889999888 78999999999999999
Q ss_pred HHHHHHHhhcCC
Q psy10504 259 FAEIVREMNFNP 270 (286)
Q Consensus 259 ~~~i~~~i~~~~ 270 (286)
|++|++.+.+..
T Consensus 160 f~~l~~~l~~~~ 171 (201)
T cd04107 160 MRFLVKNILAND 171 (201)
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
No 29
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.8e-30 Score=213.79 Aligned_cols=180 Identities=28% Similarity=0.440 Sum_probs=148.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.++.+...+.++++......+... +..+.+.+|||||+++|..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999998888888776655556665 67788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504 184 SLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ---REVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM 258 (286)
Q Consensus 184 d~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l 258 (286)
|++++.+++++.. |+..+... .+++|+++|+||+|+.... +.+...+.+.++...+. +++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999864 77766653 3589999999999996322 34567788888888887 8999999999999999
Q ss_pred HHHHHHHhhcCCCC-cCCCceecCccccC
Q psy10504 259 FAEIVREMNFNPEK-DNASFCWCSSCSIL 286 (286)
Q Consensus 259 ~~~i~~~i~~~~~~-~~~~~~~~~~c~~~ 286 (286)
|+.+++.+...... ..........|++|
T Consensus 159 f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 159 FDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred HHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 99999988765433 11222334567766
No 30
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=5.1e-30 Score=211.58 Aligned_cols=165 Identities=30% Similarity=0.507 Sum_probs=143.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC----------CeEEEEEEEeCCCcccchhhhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD----------KAPCVLEILDTAGTEQFASMRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~----------~~~~~l~l~DtpG~~~~~~~~~~ 171 (286)
+.+||+++|++|+|||||++++..+.+...+.+|++ ++....+.+. +..+.+.+|||||+++|..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 458999999999999999999999999888888776 3333444433 45678999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
+++++|++++|||++++.+++++..|+..+......++.|+++|+||+|+. ..+.+...+...+++..+++++++||++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~ 161 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE-DQRQVSEEQAKALADKYGIPYFETSAAT 161 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch-hcCccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 999999999999999999999999999998876555688999999999997 4455667778889999999999999999
Q ss_pred CCcHHHHHHHHHHHhhc
Q psy10504 252 KTNVNEMFAEIVREMNF 268 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~ 268 (286)
|.|++++|++|++.+.+
T Consensus 162 ~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 162 GTNVEKAVERLLDLVMK 178 (180)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 31
>KOG0079|consensus
Probab=99.97 E-value=3.1e-31 Score=203.54 Aligned_cols=162 Identities=36% Similarity=0.580 Sum_probs=151.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
-++.+|+|++|+|||||+.+|..+.|...|..|++ ++...++.++|..+.+++|||+|+++|+.+...|++..+++++|
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV 87 (198)
T KOG0079|consen 8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 87 (198)
T ss_pred HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence 36789999999999999999999999999988887 88889999999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||+++.+||.+++.|++.+.. .++.+|-++|+||.|.+ ..+.+..++++.++...++.+|++||++..|++..|..|
T Consensus 88 YDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~-~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci 164 (198)
T KOG0079|consen 88 YDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDP-ERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI 164 (198)
T ss_pred EECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCc-cceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence 999999999999999999987 45689999999999998 677888899999999999999999999999999999998
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
.+...+
T Consensus 165 t~qvl~ 170 (198)
T KOG0079|consen 165 TKQVLQ 170 (198)
T ss_pred HHHHHH
Confidence 886543
No 32
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1e-29 Score=207.20 Aligned_cols=162 Identities=29% Similarity=0.552 Sum_probs=141.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 7999999999999999999999999888877776 344455666777788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+.... .++.|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDME-DERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLV 159 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999999887643 3478999999999997 4445566777778888889999999999999999999999
Q ss_pred HHhhc
Q psy10504 264 REMNF 268 (286)
Q Consensus 264 ~~i~~ 268 (286)
+.+.+
T Consensus 160 ~~~~~ 164 (165)
T cd01865 160 DIICD 164 (165)
T ss_pred HHHHh
Confidence 87754
No 33
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=8.1e-30 Score=207.74 Aligned_cols=160 Identities=48% Similarity=0.865 Sum_probs=141.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||++++.++.+...+.++........+..++..+.+.+|||||+++|..++..+++.+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 78999999999999999999999998888888876666667778888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
++++.+++.+..|+..+..... .+++|+++|+||+|+. ..+.+...+...++..+++++++|||++|.|++++|++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l 160 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDES-HKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL 160 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccc-ccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence 9999999999999888876542 2579999999999997 345566667777888888999999999999999999999
Q ss_pred HHH
Q psy10504 263 VRE 265 (286)
Q Consensus 263 ~~~ 265 (286)
+..
T Consensus 161 ~~~ 163 (165)
T cd04140 161 LNL 163 (165)
T ss_pred Hhc
Confidence 864
No 34
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=7e-30 Score=210.25 Aligned_cols=160 Identities=30% Similarity=0.554 Sum_probs=141.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|++|||||||+.++..+.+...+.+|+.+.....+..++..+.+.+|||||+++|..++..+++++|++|+||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 37999999999999999999999999999999988777777888898899999999999999999999999999999999
Q ss_pred ECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504 184 SLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASAK 250 (286)
Q Consensus 184 d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa~ 250 (286)
|++++.+++++. .|+..+... .+++|+++|+||+|+.+.. +.+...+.+.+++.++ +++++|||+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 999999999996 577777653 3589999999999996321 3467788888999888 489999999
Q ss_pred CCCcHHHHHHHHHHH
Q psy10504 251 NKTNVNEMFAEIVRE 265 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~ 265 (286)
+|.|++++|+.+++.
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 35
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=1.3e-29 Score=206.92 Aligned_cols=164 Identities=35% Similarity=0.605 Sum_probs=144.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++.+..++..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 358999999999999999999999999888888776 3445667788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+... ...+.|+++|+||+|+. +.+.....+...+++..+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~ 159 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDME-EKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFT 159 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988774 34579999999999998 34555667778888888999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
+++.+..
T Consensus 160 i~~~~~~ 166 (167)
T cd01867 160 LAKDIKK 166 (167)
T ss_pred HHHHHHh
Confidence 9998754
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=1.2e-29 Score=206.12 Aligned_cols=162 Identities=30% Similarity=0.568 Sum_probs=142.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|||||||+++++++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999999888888776 344566778888899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCC----CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGS----ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~----~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
|++++.+++.+..|+..+...... .+.|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLT-KHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcc-cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999998875432 578999999999997 345566777777888888999999999999999999
Q ss_pred HHHHHHhh
Q psy10504 260 AEIVREMN 267 (286)
Q Consensus 260 ~~i~~~i~ 267 (286)
++|++.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998764
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.4e-29 Score=215.39 Aligned_cols=163 Identities=31% Similarity=0.486 Sum_probs=143.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECC-eEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDK-APCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+||+++|++|||||||+++|.++.+...+.+|.+ ++....+.+++ ..+.+.+|||||++.+..++..+++++|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999999888888886 55566677754 567899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
||++++.+++.+..|+..+..... ..+.|+++|+||+|+. ..+.+...+...+++.++++++++||++|+|++++|+
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~-~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~ 159 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE-HNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQ 159 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 999999999999999999887543 2357899999999997 4566677788889999999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
++++.+..
T Consensus 160 ~l~~~l~~ 167 (215)
T cd04109 160 QLAAELLG 167 (215)
T ss_pred HHHHHHHh
Confidence 99998764
No 38
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.6e-29 Score=207.41 Aligned_cols=164 Identities=29% Similarity=0.420 Sum_probs=141.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
||+++|++|+|||||++++.++.+...+.+|++ ++....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 799999999999999999999999999988886 4444667788888899999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
++++.+++.+..|+..+.........|+++|+||+|+.+... .....+...+++..+.+++++||++|.|++++|+.++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~ 161 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA 161 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999887654334578999999999863322 2345566677788889999999999999999999999
Q ss_pred HHhhcC
Q psy10504 264 REMNFN 269 (286)
Q Consensus 264 ~~i~~~ 269 (286)
+.+.+.
T Consensus 162 ~~~~~~ 167 (170)
T cd04108 162 ALTFEL 167 (170)
T ss_pred HHHHHc
Confidence 988664
No 39
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=2.1e-29 Score=205.26 Aligned_cols=162 Identities=40% Similarity=0.663 Sum_probs=143.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988877777765 45556677888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||++++.+++++..|+..+.... .++.|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 159 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT-DKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTM 159 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHH
Confidence 99999999999999999887743 3578999999999987 445566777888888899999999999999999999999
Q ss_pred HHHhh
Q psy10504 263 VREMN 267 (286)
Q Consensus 263 ~~~i~ 267 (286)
++.+.
T Consensus 160 ~~~~~ 164 (166)
T cd01869 160 AREIK 164 (166)
T ss_pred HHHHH
Confidence 99875
No 40
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.9e-29 Score=209.95 Aligned_cols=179 Identities=34% Similarity=0.526 Sum_probs=149.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|||||||++++.++.+...+.+|.+ ++....+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 5899999999999999999999998877777765 344566778888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+.... ..+.|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~ 158 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLV-NNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLV 158 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCc-ccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999888753 3468999999999987 4555667777788888889999999999999999999999
Q ss_pred HHhhcCCCCc-------CCCceecCcccc
Q psy10504 264 REMNFNPEKD-------NASFCWCSSCSI 285 (286)
Q Consensus 264 ~~i~~~~~~~-------~~~~~~~~~c~~ 285 (286)
+.+.....+. ........+|++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (188)
T cd04125 159 KLIIKRLEEQELSPKNIKQQFKKKNNCFI 187 (188)
T ss_pred HHHHHHhhcCcCCccccccccccccCccc
Confidence 9876533222 223344566775
No 41
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=2.1e-29 Score=208.86 Aligned_cols=165 Identities=26% Similarity=0.433 Sum_probs=140.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|+.|+|||||++++..+.+...+.+|.+ ++....+..++..+.+.+|||+|+++|..++..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 5899999999999999999999999988888886 455567888998899999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC----CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH----QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
|++++.+++++..|+..+.... ....| ++|+||+|+..+ .+.....+.+.+++..++++++|||++|.|++++|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999887753 23567 678999999521 11122355677888888999999999999999999
Q ss_pred HHHHHHhhcCCC
Q psy10504 260 AEIVREMNFNPE 271 (286)
Q Consensus 260 ~~i~~~i~~~~~ 271 (286)
+++++.+.+.+.
T Consensus 159 ~~l~~~l~~~~~ 170 (182)
T cd04128 159 KIVLAKAFDLPL 170 (182)
T ss_pred HHHHHHHHhcCC
Confidence 999998876543
No 42
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=2.8e-29 Score=203.91 Aligned_cols=159 Identities=31% Similarity=0.549 Sum_probs=141.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||+|++++..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 4899999999999999999999999888888876 344567788888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+.... ..+.|+++|+||.|+. ..+.+...+...+++..+++++++||++|.|++++|++|+
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 158 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEE-QKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLT 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999999999887643 3478999999999997 4566677888899999999999999999999999999998
Q ss_pred HH
Q psy10504 264 RE 265 (286)
Q Consensus 264 ~~ 265 (286)
+.
T Consensus 159 ~~ 160 (161)
T cd04117 159 EL 160 (161)
T ss_pred hh
Confidence 64
No 43
>KOG0087|consensus
Probab=99.97 E-value=6.9e-30 Score=207.84 Aligned_cols=164 Identities=34% Similarity=0.549 Sum_probs=154.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.-+||+++|++++|||-|+.++..+.|.-...+|++ ++.+..+.++++.++.++|||+||++|+++...||+.|.++++
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll 92 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 92 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence 679999999999999999999999999999999988 7788889999999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++...+|+++..|+.+++.+ ..+++++++|+||+||. +.+.++.++...+++..+..++++||+++.|++++|+.
T Consensus 93 VYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~-~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~ 170 (222)
T KOG0087|consen 93 VYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLN-HLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFER 170 (222)
T ss_pred EEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhh-hccccchhhhHhHHHhcCceEEEecccccccHHHHHHH
Confidence 99999999999999999999985 56799999999999998 68889999999999999999999999999999999998
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
++..|..
T Consensus 171 ~l~~I~~ 177 (222)
T KOG0087|consen 171 VLTEIYK 177 (222)
T ss_pred HHHHHHH
Confidence 8886543
No 44
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=5.4e-29 Score=203.48 Aligned_cols=162 Identities=56% Similarity=1.004 Sum_probs=144.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
++||+++|.+|+|||||++++.++.+...+.+++++.....+..++..+.+.+|||||+++|..++..+++.++++++||
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 37899999999999999999999999888888888777777888888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~~i 262 (286)
|++++.+++.+..|...+.......++|+++++||.|+. ..+....++...+++.++ ++++++||+++.|++++|+++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i 159 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE-DDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc-ccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence 999999999999998888775555689999999999997 445556666777778887 899999999999999999999
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
+..+
T Consensus 160 ~~~~ 163 (168)
T cd04177 160 VRQI 163 (168)
T ss_pred HHHH
Confidence 8754
No 45
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=6.6e-29 Score=208.79 Aligned_cols=165 Identities=34% Similarity=0.519 Sum_probs=144.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++.++.+...+.+|.+ ++....+..++..+.+.+|||||++.+..++..++++++++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 468999999999999999999999988877777776 4455667778888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+... .+..|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDP-ERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 99999999999999999988764 3578999999999997 44455667778888888899999999999999999999
Q ss_pred HHHHhhcCC
Q psy10504 262 IVREMNFNP 270 (286)
Q Consensus 262 i~~~i~~~~ 270 (286)
|.+.+....
T Consensus 162 l~~~~~~~~ 170 (199)
T cd04110 162 ITELVLRAK 170 (199)
T ss_pred HHHHHHHhh
Confidence 999876543
No 46
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=5.7e-29 Score=212.18 Aligned_cols=163 Identities=28% Similarity=0.499 Sum_probs=141.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
+..+||+++|++|||||||++++..+.+...+.+|++ +.....+..++..+.+.+|||+|+++|..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 5679999999999999999999999999888888876 445556777777888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+... .+++|+++|+||+|+.. +.+...+. .+.+..++++++|||++|.|++++|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~--~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~ 165 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFL 165 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh--ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHH
Confidence 999999999999999999998864 35899999999999962 33333344 56677789999999999999999999
Q ss_pred HHHHHhhcC
Q psy10504 261 EIVREMNFN 269 (286)
Q Consensus 261 ~i~~~i~~~ 269 (286)
+|++.+.+.
T Consensus 166 ~l~~~~~~~ 174 (219)
T PLN03071 166 YLARKLAGD 174 (219)
T ss_pred HHHHHHHcC
Confidence 999998654
No 47
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=5.1e-29 Score=201.82 Aligned_cols=158 Identities=34% Similarity=0.590 Sum_probs=137.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC--CeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD--KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+||+++|++++|||||++++.++.+...+.+|++ ++....+.+. +..+.+++|||||+++|..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 4899999999999999999999988887777765 3334555666 677889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++++++.+..|+..+... .+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 157 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLL-DQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEY 157 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcc-cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 99999999999999999888653 3589999999999997 44556667788888889999999999999999999999
Q ss_pred HHHH
Q psy10504 262 IVRE 265 (286)
Q Consensus 262 i~~~ 265 (286)
|...
T Consensus 158 l~~~ 161 (162)
T cd04106 158 LAEK 161 (162)
T ss_pred HHHh
Confidence 9764
No 48
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.5e-29 Score=210.69 Aligned_cols=166 Identities=34% Similarity=0.564 Sum_probs=143.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+||+++|++|+|||||++++.++.+...+.+|++ ++....+.+ ++..+.+++|||||++.+..++..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 48999999999999999999999988777777765 444555655 4667789999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++++..|+..+.........|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~ 160 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLE-SQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL 160 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccc-cccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999988775444467899999999997 45567777888899999999999999999999999999
Q ss_pred HHHHhhcCC
Q psy10504 262 IVREMNFNP 270 (286)
Q Consensus 262 i~~~i~~~~ 270 (286)
|++.+.+..
T Consensus 161 l~~~~~~~~ 169 (211)
T cd04111 161 LTQEIYERI 169 (211)
T ss_pred HHHHHHHHh
Confidence 999876543
No 49
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=4.9e-29 Score=202.02 Aligned_cols=160 Identities=42% Similarity=0.756 Sum_probs=148.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCc-cceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
||+++|+.++|||||+++|.++.+...+.+|. .+.....+..++..+.+.+||++|+++|..++..+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999999998887 57778889999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
++++.+++.+..|+..+..... .+.|+++++||.|+. ..+.++..+.+.+++.++.+|++|||+++.|+.++|..+++
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~ 158 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLS-DEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIR 158 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGG-GGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeecccccc-ccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999988654 468999999999997 46778888999999999999999999999999999999999
Q ss_pred Hhh
Q psy10504 265 EMN 267 (286)
Q Consensus 265 ~i~ 267 (286)
.+.
T Consensus 159 ~i~ 161 (162)
T PF00071_consen 159 KIL 161 (162)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 50
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=1.1e-28 Score=201.81 Aligned_cols=163 Identities=36% Similarity=0.546 Sum_probs=143.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+||+++|++|||||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 48999999999999999999999988777766654 44456677888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+|++++.+++++..|+..+.... .+++|+++|+||.|+. ..+.....+...++...+++++++||+++.|++++|+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~ 161 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLE-SRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINT 161 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999887753 4689999999999997 345566777888888889999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
++.+.+
T Consensus 162 ~~~~~~ 167 (168)
T cd01866 162 AKEIYE 167 (168)
T ss_pred HHHHHh
Confidence 988754
No 51
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.97 E-value=5.9e-29 Score=208.82 Aligned_cols=181 Identities=29% Similarity=0.506 Sum_probs=142.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcccC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYIKN 175 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~~~ 175 (286)
+||+++|++|||||||++++.++.+...+.++++ +.....+.+++..+.+++|||||+..+.. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 4899999999999999999999999888888876 33445667788888899999999765432 23445789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-HhcCCCEEEEeCCCC
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQREVPTLDGQALA-QSWGCPFIEASAKNK 252 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~vSa~~~ 252 (286)
+|++++|||++++.+++.+..|+..+.... ..+++|+++|+||+|+.. .+.....+.+.++ +..++++++|||++|
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQR-HRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccc-cccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 999999999999999999999998887754 246899999999999973 3444555555554 356899999999999
Q ss_pred CcHHHHHHHHHHHhhcCCCCcCCCce-----ecCccccC
Q psy10504 253 TNVNEMFAEIVREMNFNPEKDNASFC-----WCSSCSIL 286 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~~~~~~~~~-----~~~~c~~~ 286 (286)
.|++++|+.+++.+...........+ ....|++|
T Consensus 160 ~~v~~lf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (198)
T cd04142 160 WHILLLFKELLISATTRGRSTHPALRLQGALHRERCSIM 198 (198)
T ss_pred CCHHHHHHHHHHHhhccCCCccHHHHHHHHHhhcCcccC
Confidence 99999999999987655544332221 22568776
No 52
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=9.9e-29 Score=203.98 Aligned_cols=179 Identities=41% Similarity=0.655 Sum_probs=154.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
.||+++|++|+|||||++++..+.+...+.+++.......+..++..+.+.+|||||+++|..++..++..++++++|||
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999999888888888876667778888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
+++..+++.+..|+..+.......+.|+++|+||+|+. ..+.....+...+.+.++.+++++||+++.|++++|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH-TQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE 160 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh-hcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999998888876555688999999999997 34555566667778888899999999999999999999999
Q ss_pred HhhcCCCCcCCCceecCccccC
Q psy10504 265 EMNFNPEKDNASFCWCSSCSIL 286 (286)
Q Consensus 265 ~i~~~~~~~~~~~~~~~~c~~~ 286 (286)
.+...+.... ......|++|
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~ 180 (180)
T cd04137 161 EIEKVENPLD--PGQKKKCSIM 180 (180)
T ss_pred HHHHhcCCCC--CCCCCCceeC
Confidence 9887655443 3355788887
No 53
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.1e-28 Score=200.92 Aligned_cols=161 Identities=34% Similarity=0.569 Sum_probs=139.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+++|||||++++..++..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999888777766664 4455667788887889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~~ 260 (286)
|||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.....+...+++..+. .++++||++|.|++++|+
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~ 159 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLE-EQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFL 159 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHH
Confidence 99999999999999999998764 34589999999999997 4455666777788888775 689999999999999999
Q ss_pred HHHHH
Q psy10504 261 EIVRE 265 (286)
Q Consensus 261 ~i~~~ 265 (286)
++.+.
T Consensus 160 ~l~~~ 164 (165)
T cd01864 160 LMATE 164 (165)
T ss_pred HHHHh
Confidence 99875
No 54
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.2e-28 Score=200.47 Aligned_cols=161 Identities=35% Similarity=0.583 Sum_probs=141.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+||+++|+++||||||++++.++.+...+.++.+ ++....+..++..+.+++||+||++++..++..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988777767765 55566778888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||++++.+++++..|+..+.... ..++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLR-HLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999887753 3368999999999997 445566777788888888999999999999999999999
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 8765
No 55
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=1.2e-28 Score=205.93 Aligned_cols=164 Identities=37% Similarity=0.651 Sum_probs=142.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+||+++|++|||||||++++.++.+.. .+.+|++ ++....+.+++..+.+++|||||++++..++..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 489999999999999999999988754 5666665 44445677888888999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||++++.+++++..|+..+.... ..++|+++|+||+|+. ..+.....+.+.+.+.++++++++||++|.|++++|++|
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l 158 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMS-GERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAV 158 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccch-hccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999998888753 3478999999999997 345566677888888889999999999999999999999
Q ss_pred HHHhhcCC
Q psy10504 263 VREMNFNP 270 (286)
Q Consensus 263 ~~~i~~~~ 270 (286)
.+.+.+..
T Consensus 159 ~~~~~~~~ 166 (191)
T cd04112 159 AKELKHRK 166 (191)
T ss_pred HHHHHHhc
Confidence 99887664
No 56
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=1.2e-28 Score=201.88 Aligned_cols=164 Identities=35% Similarity=0.570 Sum_probs=143.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-hhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA-SMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~~~~~~d~vi 180 (286)
+.+||+++|++|+|||||++++..+.+...+.++.+ ++....+.+++..+.+.+|||||++++. .++..+++++|+++
T Consensus 1 r~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 358999999999999999999999988877777765 4455667888888889999999999887 57889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC---CCcHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN---KTNVNE 257 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~---~~gv~~ 257 (286)
+|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++ +.++++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~ 159 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLR-EQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEA 159 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccch-hhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHH
Confidence 999999999999999999988876555689999999999987 4556677778888888899999999999 899999
Q ss_pred HHHHHHHHhh
Q psy10504 258 MFAEIVREMN 267 (286)
Q Consensus 258 l~~~i~~~i~ 267 (286)
+|..+++.++
T Consensus 160 ~f~~l~~~~~ 169 (170)
T cd04115 160 IFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999998763
No 57
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.1e-28 Score=199.86 Aligned_cols=160 Identities=38% Similarity=0.548 Sum_probs=140.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+||+||+++|..++..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 5899999999999999999999988777766665 444566778888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++++..|+..+.... .+++|+++|+||+|+. ..+.....+...+++..+++++++||+++.|++++|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLA-DQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCA 158 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcc-hhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999999998877643 4689999999999997 4556677788888888899999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 159 ~~~ 161 (161)
T cd04113 159 RSI 161 (161)
T ss_pred HhC
Confidence 753
No 58
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=1.4e-28 Score=200.95 Aligned_cols=161 Identities=29% Similarity=0.530 Sum_probs=137.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|||||||++++..+.+...+.+|.+ +.....+..++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 5899999999999999999999888877777775 344455666778888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+..... ++|+++|+||+|+. .+.... +...+.+..+++++++||++|.|++++|++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~--~~~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~ 155 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIK--DRKVKA-KQITFHRKKNLQYYEISAKSNYNFEKPFLWLA 155 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcc--cccCCH-HHHHHHHHcCCEEEEEeCCCCCChHHHHHHHH
Confidence 99999999999999999887543 89999999999997 222322 33456666778999999999999999999999
Q ss_pred HHhhcCC
Q psy10504 264 REMNFNP 270 (286)
Q Consensus 264 ~~i~~~~ 270 (286)
+.+.+.+
T Consensus 156 ~~~~~~~ 162 (166)
T cd00877 156 RKLLGNP 162 (166)
T ss_pred HHHHhcc
Confidence 9987644
No 59
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=9.5e-29 Score=202.77 Aligned_cols=159 Identities=33% Similarity=0.591 Sum_probs=140.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~ 186 (286)
|+++|++|+|||||++++.++.+...+.++..+.....+..++..+.+.+|||||+++|..++..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 58999999999999999999999888888887777777888898889999999999999999999999999999999999
Q ss_pred CcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504 187 NHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKNKT 253 (286)
Q Consensus 187 ~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 253 (286)
++.+++.+. .|+..+... .+++|+++|+||+|+.+.. +.+...+.+.+++..+. ++++|||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 999999986 488877663 3589999999999996321 23666777888888885 89999999999
Q ss_pred cHHHHHHHHHHHhh
Q psy10504 254 NVNEMFAEIVREMN 267 (286)
Q Consensus 254 gv~~l~~~i~~~i~ 267 (286)
|++++|+.+++.+.
T Consensus 159 ~v~~lf~~l~~~~~ 172 (174)
T smart00174 159 GVREVFEEAIRAAL 172 (174)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 60
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.96 E-value=9.6e-29 Score=210.32 Aligned_cols=159 Identities=28% Similarity=0.408 Sum_probs=133.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|.+++|||||+++|..+.+.. +.+|++.... ... ...+.+.+|||||++.|..++..+++.+|++|+|||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~-~~~--~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~D 76 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFY-LKQ--WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYD 76 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEE-EEE--eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEE
Confidence 589999999999999999999998865 4555542211 111 245679999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC------------------CCCCCCHHHHHHHHHhcC-----
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS------------------HQREVPTLDGQALAQSWG----- 241 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~------------------~~~~~~~~~~~~~~~~~~----- 241 (286)
++++.+++++..|+..+... ..+++|+++|+||+|+.+ ..+.+..+++..+++..+
T Consensus 77 vt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~ 155 (220)
T cd04126 77 VSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML 155 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence 99999999999988877664 345799999999999974 146778888999998876
Q ss_pred ---------CCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 242 ---------CPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 242 ---------~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
++|++|||++|.||+++|+.+++.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999999987653
No 61
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1e-28 Score=207.38 Aligned_cols=173 Identities=38% Similarity=0.653 Sum_probs=145.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|++|+|||||++++..+.+...+.+++.+.....+.+.+..+.+++||+||+..|..++..+++.+|++++|||+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999999988888888777777888888888899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
+++.+++.+..|+..+.......++|+++|+||+|+....+.+...+...... ..+.+++++||++|.|++++|+++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~ 160 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLR 160 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHH
Confidence 99999999999998888766556899999999999974444444444443333 45678999999999999999999999
Q ss_pred HhhcCCCCcCCCce
Q psy10504 265 EMNFNPEKDNASFC 278 (286)
Q Consensus 265 ~i~~~~~~~~~~~~ 278 (286)
.+...+.....+.+
T Consensus 161 ~~~~~~~~~~~~~~ 174 (198)
T cd04147 161 QANLPYNLSPALRR 174 (198)
T ss_pred HhhcccccchhhHH
Confidence 87755544443333
No 62
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=1.6e-28 Score=212.65 Aligned_cols=165 Identities=36% Similarity=0.635 Sum_probs=143.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||+++++.+.+...+.+|+++.....+.+++..+.+.+|||+|++.|..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 48999999999999999999999999889999988888888899999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHh--------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCcH
Q psy10504 185 LTNHHTFQDIKQMKELITRVK--------GSERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNV 255 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~--------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv 255 (286)
++++.+++++..|+..+.... ...++|+++|+||+|+. ..+.+...+...+... .++.++++||++|.|+
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~-~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI 159 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRD-FPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL 159 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccch-hccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence 999999999999988887642 23579999999999997 3345566666665543 4678999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q psy10504 256 NEMFAEIVREMNFNP 270 (286)
Q Consensus 256 ~~l~~~i~~~i~~~~ 270 (286)
+++|++|++.+....
T Consensus 160 ~elf~~L~~~~~~p~ 174 (247)
T cd04143 160 DEMFRALFSLAKLPN 174 (247)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999764433
No 63
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.96 E-value=1.3e-28 Score=199.49 Aligned_cols=155 Identities=23% Similarity=0.435 Sum_probs=132.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|+.|+|||||+.++..+.+...+.++...+ ...+.+++..+.+.+|||+|++. ..+++.+|++++|||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d 74 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFS 74 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEE
Confidence 489999999999999999999998877766654444 56788899888899999999975 346788999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-HQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~i 262 (286)
++++.+++++..|+..+......+++|+++|+||.|+.. ..+.+...+.+.+++.. +++|++|||++|.|++++|+.+
T Consensus 75 ~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 75 LENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 999999999999999998765556899999999999853 35667777888888776 4899999999999999999999
Q ss_pred HHH
Q psy10504 263 VRE 265 (286)
Q Consensus 263 ~~~ 265 (286)
++.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 865
No 64
>KOG0093|consensus
Probab=99.96 E-value=2e-29 Score=193.32 Aligned_cols=167 Identities=27% Similarity=0.510 Sum_probs=152.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+|+.++|...+|||||+.++.+..|...+..|.+ ++..+++.-..+.+.+++|||+|+++|+.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 457999999999999999999999999988887776 6666777667788999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
+||+++.+++..+..|...+..+ .-.+.|+|+|+||||+. +++.++.+..+.++..+|..|+++||+.+.|++++|+.
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd-~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMD-SERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCc-cceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999998876 34589999999999998 88899999999999999999999999999999999999
Q ss_pred HHHHhhcCCC
Q psy10504 262 IVREMNFNPE 271 (286)
Q Consensus 262 i~~~i~~~~~ 271 (286)
++..+-+..+
T Consensus 178 lv~~Ic~kms 187 (193)
T KOG0093|consen 178 LVDIICDKMS 187 (193)
T ss_pred HHHHHHHHhh
Confidence 9998866543
No 65
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=2.7e-28 Score=199.42 Aligned_cols=161 Identities=35% Similarity=0.581 Sum_probs=139.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+++|||||++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 568999999999999999999999988877766665 3445667788999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE 257 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~ 257 (286)
|||++++.+++.+..|...+..... ..++|+++|+||+|+. .+.....+.+.+++..+ .+++++||++|.|+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 161 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP--ERQVSTEEAQAWCRENGDYPYFETSAKDATNVAA 161 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc--ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHH
Confidence 9999999999999999888766432 2478999999999986 45566777888888887 5899999999999999
Q ss_pred HHHHHHHH
Q psy10504 258 MFAEIVRE 265 (286)
Q Consensus 258 l~~~i~~~ 265 (286)
+|+++++.
T Consensus 162 ~~~~~~~~ 169 (170)
T cd04116 162 AFEEAVRR 169 (170)
T ss_pred HHHHHHhh
Confidence 99999875
No 66
>PLN03110 Rab GTPase; Provisional
Probab=99.96 E-value=3e-28 Score=207.36 Aligned_cols=164 Identities=32% Similarity=0.540 Sum_probs=145.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||+++|.++.+...+.+|.+ ++....+.+++..+.+++|||||+++|..++..+++.++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 568999999999999999999999988777777765 5556778888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~-~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~ 168 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLN-HLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT 168 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999999887743 3579999999999996 45566777888888888999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
+++.+.+
T Consensus 169 l~~~i~~ 175 (216)
T PLN03110 169 ILLEIYH 175 (216)
T ss_pred HHHHHHH
Confidence 9987743
No 67
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=1.2e-28 Score=200.70 Aligned_cols=161 Identities=43% Similarity=0.760 Sum_probs=139.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCccEEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d~vilv~d 184 (286)
||+++|++|+|||||+++++.+.+...+.+++.......+.+++..+.+++|||||++. +......+++.+|++++|||
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 58999999999999999999998888888887666667778888888899999999985 34556778999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC-CcHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK-TNVNEMFAEI 262 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~-~gv~~l~~~i 262 (286)
++++.+++.+..|+..+..... ..++|+++|+||+|+. ..+.+...+...+++..+++++++||++| .|++++|+.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l 159 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLL-HYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL 159 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchH-HhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence 9999999999999988887543 4589999999999986 44556677788888888999999999999 5999999999
Q ss_pred HHHhh
Q psy10504 263 VREMN 267 (286)
Q Consensus 263 ~~~i~ 267 (286)
++.+.
T Consensus 160 ~~~~~ 164 (165)
T cd04146 160 CREVR 164 (165)
T ss_pred HHHHh
Confidence 98764
No 68
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=2.1e-28 Score=201.02 Aligned_cols=158 Identities=31% Similarity=0.550 Sum_probs=139.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||+.++.++.+...+.+|..+.....+.+++..+.+++|||||+++|..++..+++++|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999999999999998877777788888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504 185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASAKN 251 (286)
Q Consensus 185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa~~ 251 (286)
++++.+++.+. .|+..+... .+++|+++|+||+|+... .+.+..++...+++..+. +++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 99999999985 577777653 347999999999998632 356677788889988886 899999999
Q ss_pred CCcHHHHHHHHHH
Q psy10504 252 KTNVNEMFAEIVR 264 (286)
Q Consensus 252 ~~gv~~l~~~i~~ 264 (286)
|.|++++|+.++.
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999998874
No 69
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.96 E-value=3e-28 Score=197.28 Aligned_cols=163 Identities=46% Similarity=0.834 Sum_probs=145.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|.+|+|||||++++..+.+...+.+++.+........++..+.+.+|||||++++..++..+++.++++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999999998888888887777778888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
++++.+++.+..|+..+.......++|+++|+||+|+.+ .+.....+...+...++.+++++||++|.|++++|+++.+
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 159 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED-KRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR 159 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc-ccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence 999999999999999888865556899999999999973 3445566677788888899999999999999999999998
Q ss_pred Hhhc
Q psy10504 265 EMNF 268 (286)
Q Consensus 265 ~i~~ 268 (286)
.+.+
T Consensus 160 ~~~~ 163 (164)
T cd04139 160 EIRQ 163 (164)
T ss_pred HHHh
Confidence 7753
No 70
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=2.1e-28 Score=200.71 Aligned_cols=160 Identities=31% Similarity=0.547 Sum_probs=140.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||++++..+.+...+.++..+.....+.+++..+.+.+|||||++.|..++..+++.+|++++|||
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999999998888888877777778888888889999999999999999999999999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEEeCCC
Q psy10504 185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEASAKN 251 (286)
Q Consensus 185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~vSa~~ 251 (286)
++++.+++++. .|...+... .+++|+++|+||+|+.+.. +.+...+.+.+++..+. ++++|||++
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 158 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALT 158 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCc
Confidence 99999999986 566666553 5689999999999986332 25666777888888885 799999999
Q ss_pred CCcHHHHHHHHHHHh
Q psy10504 252 KTNVNEMFAEIVREM 266 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i 266 (286)
|.|++++|+.+++.+
T Consensus 159 ~~gi~~~f~~~~~~~ 173 (174)
T cd04135 159 QKGLKTVFDEAILAI 173 (174)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998865
No 71
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=2.6e-28 Score=198.21 Aligned_cols=159 Identities=25% Similarity=0.440 Sum_probs=134.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|||||||++++..+.+...+.++.. +........++..+.+.+|||||+++|..++..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999988777666654 333445667788888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++++..|+..+... .+++|+++|+||+|+... ...+...+++..+++++++||++|.|++++|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 154 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS----VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAI 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh----HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 999999999999999988763 357999999999998521 12344556667789999999999999999999999
Q ss_pred HHhhcC
Q psy10504 264 REMNFN 269 (286)
Q Consensus 264 ~~i~~~ 269 (286)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd04124 155 KLAVSY 160 (161)
T ss_pred HHHHhc
Confidence 887653
No 72
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=3.6e-28 Score=196.94 Aligned_cols=162 Identities=42% Similarity=0.675 Sum_probs=141.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.+..+...+.++.+ +.....+..++..+.+.+||+||++++..++..+++.+|++++||
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 5899999999999999999999888766666655 344566778888788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+..+.. +++|+++|+||+|+. .......+..+.+.+..+++++++||++|.|+++++++|+
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~-~~~pivvv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~ 158 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD-PNVVIMLVGNKSDLE-DQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELA 158 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEEchhcc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998877543 589999999999987 3455566777778888899999999999999999999999
Q ss_pred HHhhc
Q psy10504 264 REMNF 268 (286)
Q Consensus 264 ~~i~~ 268 (286)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00175 159 REILK 163 (164)
T ss_pred HHHhh
Confidence 98754
No 73
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.96 E-value=4.5e-28 Score=196.44 Aligned_cols=161 Identities=37% Similarity=0.603 Sum_probs=142.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
++||+++|++|+|||||++++.++.+...+.++.+. +....+.+++..+.+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999999988766666653 4567788888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+|++++.+++....|+..+..... +++|+++++||+|+. ..+..+..+...+....+++++++||++|.|++++|++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLE-SKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEI 158 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc-ccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 999999999999999998887543 689999999999987 345566777778888888999999999999999999999
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
++.+
T Consensus 159 ~~~l 162 (163)
T cd01860 159 AKKL 162 (163)
T ss_pred HHHh
Confidence 9876
No 74
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.96 E-value=3.9e-28 Score=196.40 Aligned_cols=160 Identities=36% Similarity=0.585 Sum_probs=139.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.||+++|+++||||||++++.+..+...+.++.+ ++....+..++..+.+++|||||+.++..++..+++.+|++++||
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 3899999999999999999999888776666655 566677778888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+..... .+.|+++++||+|+. ..+.....+...+++..+++++++||+++.|++++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~-~~~~iilv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~ 158 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG-NDVIIVLVGNKTDLS-DKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIA 158 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEChhcc-ccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999998876432 379999999999996 4555677778888888889999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 159 ~~l 161 (161)
T cd01861 159 SAL 161 (161)
T ss_pred HhC
Confidence 753
No 75
>KOG0091|consensus
Probab=99.96 E-value=4.4e-29 Score=194.73 Aligned_cols=165 Identities=36% Similarity=0.568 Sum_probs=148.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..++++++|++-+|||||++++..+++..-..||.+ |+....+.. +|..+++++|||+||++|+++...||++.-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 568999999999999999999999999998888887 555544443 577889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
+|||.++.++|+.++.|..+...+...|..++ .+|++|+|+. ..++++.++++.+++..|..|+++||++|.|+++.|
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~-SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF 165 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQ-SQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF 165 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchh-hhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence 99999999999999999999888766566665 6889999998 889999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy10504 260 AEIVREMNF 268 (286)
Q Consensus 260 ~~i~~~i~~ 268 (286)
+.|.+.+-.
T Consensus 166 ~mlaqeIf~ 174 (213)
T KOG0091|consen 166 DMLAQEIFQ 174 (213)
T ss_pred HHHHHHHHH
Confidence 999987654
No 76
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.3e-28 Score=203.73 Aligned_cols=158 Identities=27% Similarity=0.427 Sum_probs=130.6
Q ss_pred eEEEEEECCCCCcHHHHHH-HHhcC-----cCCCccCCCcc--ceEEEE--------EEECCeEEEEEEEeCCCcccchh
Q psy10504 104 EFKVVVLGSGGVGKSALTV-QFVSG-----CFMEKYDPTIE--DFYRKE--------IEVDKAPCVLEILDTAGTEQFAS 167 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~l~DtpG~~~~~~ 167 (286)
.+||+++|+.+||||||+. ++.++ .+...+.||++ +..... ..+++..+.+++|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999995 66554 34566778874 222222 25688899999999999976 3
Q ss_pred hhhhcccCccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC------------------CCCC
Q psy10504 168 MRDLYIKNGQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH------------------QREV 228 (286)
Q Consensus 168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~------------------~~~~ 228 (286)
++..+++++|++++|||++++.+++++. .|...+... .++.|+++|+||+|+.+. .+.+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 5677899999999999999999999997 588887664 357899999999999631 3678
Q ss_pred CHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 229 PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
...+++.+++.++++|++|||++|.|++++|+.+++.
T Consensus 158 ~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8889999999999999999999999999999999864
No 77
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=7.8e-28 Score=200.95 Aligned_cols=163 Identities=30% Similarity=0.469 Sum_probs=139.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+||+++|++|+|||||++++.++.+.. .+.+|++.. ....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999998874 577776643 345688889988899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC---CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ---REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
||++++.+++.+..|+..+... .+++|+++|+||+|+.+.. +.+...+...++...+++++++||++|.|++++|
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999888763 3478999999999986332 3445566777788888999999999999999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
+++.+.+.+.
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 78
>PLN03118 Rab family protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=202.82 Aligned_cols=166 Identities=36% Similarity=0.599 Sum_probs=138.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||+++|.++.+. .+.++.+ ++....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl 91 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL 91 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 4699999999999999999999998774 4455554 4445567778888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 182 v~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
|||++++.+++++.. |...+.......+.|+++|+||+|+. ..+.....+...++...+++++++||+++.|++++|+
T Consensus 92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~-~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~ 170 (211)
T PLN03118 92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRE-SERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE 170 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999986 44445443334578999999999997 3445566777778888889999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10504 261 EIVREMNFNP 270 (286)
Q Consensus 261 ~i~~~i~~~~ 270 (286)
+|.+.+.+.+
T Consensus 171 ~l~~~~~~~~ 180 (211)
T PLN03118 171 ELALKIMEVP 180 (211)
T ss_pred HHHHHHHhhh
Confidence 9998876544
No 79
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=1.2e-27 Score=202.85 Aligned_cols=165 Identities=36% Similarity=0.559 Sum_probs=144.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++..+.+...+.++++ ++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 458999999999999999999999888777766665 4445667788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+.... .++.|+++|+||+|+. ..+.....+.+.+++..+++++++||+++.|++++|++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLA-HRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 999999999999999988876543 3579999999999997 45567778888999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy10504 262 IVREMNFN 269 (286)
Q Consensus 262 i~~~i~~~ 269 (286)
+++.+.+.
T Consensus 163 l~~~~~~~ 170 (210)
T PLN03108 163 TAAKIYKK 170 (210)
T ss_pred HHHHHHHH
Confidence 99888654
No 80
>KOG0086|consensus
Probab=99.96 E-value=1.3e-28 Score=190.11 Aligned_cols=164 Identities=32% Similarity=0.476 Sum_probs=151.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.-+|++++|+.|.|||+|+++|...++..+...|++ ++....+.+.++.+++++|||+||++|++..+.||+++.+.++
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL 87 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL 87 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence 458999999999999999999999999888888877 7778889999999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||+++.++|+.+..|+..+... ..+++-+++++||.|+. +.+++...+...++.+..+.++++||++|+|+++.|-.
T Consensus 88 VYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~-~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~ 165 (214)
T KOG0086|consen 88 VYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLK 165 (214)
T ss_pred EEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcC-hhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHH
Confidence 99999999999999999999874 56788899999999998 88899999999999999999999999999999999987
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
..+++..
T Consensus 166 c~~tIl~ 172 (214)
T KOG0086|consen 166 CARTILN 172 (214)
T ss_pred HHHHHHH
Confidence 7777654
No 81
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.96 E-value=1.5e-27 Score=193.10 Aligned_cols=159 Identities=33% Similarity=0.566 Sum_probs=139.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.++.+...+.++.+ ++....+...+..+.+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 5899999999999999999999888776666665 344455667777888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+..+...++.|+++|+||+|+. .+.....+...+.+..+++++++||++|.|+++++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKE--NREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccc--ccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 999999999999999988887666789999999999997 344556677788888899999999999999999999998
Q ss_pred HH
Q psy10504 264 RE 265 (286)
Q Consensus 264 ~~ 265 (286)
+.
T Consensus 159 ~~ 160 (161)
T cd01863 159 EK 160 (161)
T ss_pred Hh
Confidence 75
No 82
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=7.5e-28 Score=202.18 Aligned_cols=155 Identities=26% Similarity=0.493 Sum_probs=135.4
Q ss_pred ECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504 110 LGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188 (286)
Q Consensus 110 vG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~ 188 (286)
+|++|||||||+++++.+.+...+.+|++ ++....+.+++..+.+.+|||+|+++|..++..+++++|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 69999999999999999999888888875 55566678888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 189 HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.+++.+..|...+.+. .+++|+++|+||+|+.. +.+.... ..+++..++++++|||++|.|++++|++|++.+.+
T Consensus 81 ~S~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~--~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 81 VTYKNVPNWHRDLVRV--CENIPIVLCGNKVDVKD--RKVKAKS-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred HHHHHHHHHHHHHHHh--CCCCCEEEEEECccccc--ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999998874 35899999999999862 3333333 35677788999999999999999999999998865
Q ss_pred C
Q psy10504 269 N 269 (286)
Q Consensus 269 ~ 269 (286)
.
T Consensus 156 ~ 156 (200)
T smart00176 156 D 156 (200)
T ss_pred c
Confidence 4
No 83
>KOG0088|consensus
Probab=99.96 E-value=3.5e-29 Score=194.30 Aligned_cols=167 Identities=32% Similarity=0.575 Sum_probs=152.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...+|++++|..-+|||||+-+++.++|......|.. .+..+++.+.+....+.+|||+||++|.++-+.||++.++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 3569999999999999999999999999877666654 667788888899999999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++|.++|+.++.|..++...... .+-++||+||+|+. .++.+...+.+.+++..|..++++||+++.|+.++|+
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~mlGn-ei~l~IVGNKiDLE-eeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe 168 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTMLGN-EIELLIVGNKIDLE-EERQVTRQEAEAYAESVGALYMETSAKDNVGISELFE 168 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHHhCC-eeEEEEecCcccHH-HhhhhhHHHHHHHHHhhchhheecccccccCHHHHHH
Confidence 999999999999999999999987654 68899999999998 7888999999999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10504 261 EIVREMNFNP 270 (286)
Q Consensus 261 ~i~~~i~~~~ 270 (286)
.+...+.+.-
T Consensus 169 ~Lt~~MiE~~ 178 (218)
T KOG0088|consen 169 SLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHh
Confidence 9998775543
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=1.4e-27 Score=193.86 Aligned_cols=159 Identities=31% Similarity=0.485 Sum_probs=134.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
+||+++|++|||||||++++..+ .+...+.++++ +.....+..+ +..+.+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999865 67777887775 4334445554 56688999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++++..|+..+.... +++|+++|+||+|+. ....+...+.+.+....+++++++||+++.|++++|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 157 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLA-DKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFE 157 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHH
Confidence 9999999999999999998887743 578999999999996 4445566666677777889999999999999999999
Q ss_pred HHHHHh
Q psy10504 261 EIVREM 266 (286)
Q Consensus 261 ~i~~~i 266 (286)
++++.+
T Consensus 158 ~l~~~~ 163 (164)
T cd04101 158 SLARAF 163 (164)
T ss_pred HHHHHh
Confidence 999865
No 85
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=1.6e-27 Score=203.61 Aligned_cols=161 Identities=39% Similarity=0.642 Sum_probs=137.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc-CccEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK-NGQGFVV 181 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~-~~d~vil 181 (286)
+||+++|++|+|||||++++..+.+. ..+.++.+ +.....+.+++..+.+.+|||||++ ......+++ ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999988886 66666665 6667778888888889999999998 334455667 9999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||+++.|++++|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLA-RSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcc-ccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 99999999999999999988776545689999999999997 34556666677888888899999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
+++.+..
T Consensus 158 l~~~~~~ 164 (221)
T cd04148 158 IVRQIRL 164 (221)
T ss_pred HHHHHHh
Confidence 9999863
No 86
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=2.4e-27 Score=191.46 Aligned_cols=160 Identities=33% Similarity=0.636 Sum_probs=138.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|+|||||++++.++.+...+.+++. +.....+...+..+.+.+||+||++.+..++..+++++|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 5899999999999999999999888766666654 344556777777788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.....+.+.+.+..+++++++||+++.|++++++++.
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~ 158 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLE-RQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLA 158 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999988877544 379999999999997 4455666777778888899999999999999999999998
Q ss_pred HHh
Q psy10504 264 REM 266 (286)
Q Consensus 264 ~~i 266 (286)
+.+
T Consensus 159 ~~~ 161 (162)
T cd04123 159 KRM 161 (162)
T ss_pred HHh
Confidence 864
No 87
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=3e-27 Score=193.15 Aligned_cols=164 Identities=36% Similarity=0.593 Sum_probs=139.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++|||||||++++.++.+...+.++.+ +.....+..++..+.+++||+||++.+..++..+++.+|++|+||
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999988777777755 455566778888888999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~ 259 (286)
|++++.+++++..|...+..... ..++|+++|+||+|+.. .+.....+...+.+..+ .+++++||++|.|++++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE-KRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc-ccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 99999999999888877655432 23799999999999973 44455666777777777 899999999999999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
+++.+.+.+.
T Consensus 160 ~~i~~~~~~~ 169 (172)
T cd01862 160 ETIARKALEQ 169 (172)
T ss_pred HHHHHHHHhc
Confidence 9999987664
No 88
>KOG0395|consensus
Probab=99.96 E-value=1.1e-27 Score=200.04 Aligned_cols=165 Identities=62% Similarity=1.059 Sum_probs=157.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|.+|+|||+|..++..+.|...|.||+++.....+.+++..+.+.++||+|+++|..++..+++.+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
|+++|..||+.+..++..+.+.+....+|+++|+||+|+. ..+.++.+++..++..++++|+++||+.+.+++++|..+
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~-~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L 160 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLE-RERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL 160 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccch-hccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence 9999999999999999999777777789999999999998 568999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
++.+..
T Consensus 161 ~r~~~~ 166 (196)
T KOG0395|consen 161 VREIRL 166 (196)
T ss_pred HHHHHh
Confidence 998765
No 89
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.96 E-value=2.9e-27 Score=194.15 Aligned_cols=160 Identities=31% Similarity=0.522 Sum_probs=137.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
.||+++|++|||||||++++.++.+...+.+|..+.....+.+++..+.+.+|||||+++|..++..++.++|++++|||
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999999998888888887766777888888889999999999999999899999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504 185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEASAKN 251 (286)
Q Consensus 185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vSa~~ 251 (286)
++++.+++.+.. |...+... .+++|+++|+||+|+.+.. ..+...+.+.+++..+ .++++|||++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 999999998864 66666653 3589999999999986321 2344566777777777 4799999999
Q ss_pred CCcHHHHHHHHHHHh
Q psy10504 252 KTNVNEMFAEIVREM 266 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i 266 (286)
|.|++++|++|.+.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 90
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.96 E-value=2.8e-27 Score=190.66 Aligned_cols=160 Identities=59% Similarity=1.024 Sum_probs=143.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|++|||||||++++.+..+...+.+++.+.....+..++..+.+++||+||++.+..++..+++.+|++++|||+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 68999999999999999999988888888888877777888888788899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
+++++++++..|+..+.......++|+++|+||+|+. ..+.....+.+.+.+..+.+++++||+++.|++++|++|++.
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLE-NERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccc-ccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 9999999999999888876554689999999999997 345566777888888888999999999999999999999875
Q ss_pred h
Q psy10504 266 M 266 (286)
Q Consensus 266 i 266 (286)
+
T Consensus 160 i 160 (160)
T cd00876 160 I 160 (160)
T ss_pred C
Confidence 3
No 91
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=2.3e-27 Score=194.37 Aligned_cols=163 Identities=24% Similarity=0.324 Sum_probs=136.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.+||+++|++|+|||||++++.++.+. ..+.+|++.. ....+.+++..+.+.+||++|++.+..++..+++++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 36799999999999999999999999998 8888887644 345677888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM 258 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l 258 (286)
++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+ .+.....+.+.+++..+. .++++||++|.|++++
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 157 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDE-QQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNEL 157 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccc-cccccccCHHHHHHHcCCCCCEEEEeccCccHHHH
Confidence 999999999999998888775532 23789999999999963 232223345667777776 4699999999999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|+.+++.+..
T Consensus 158 f~~l~~~~~~ 167 (169)
T cd01892 158 FTKLATAAQY 167 (169)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 92
>KOG0095|consensus
Probab=99.96 E-value=4.5e-28 Score=186.46 Aligned_cols=161 Identities=34% Similarity=0.576 Sum_probs=148.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
-+||+++|..|+|||+|++++..+.|++....|++ ++..+++.+++.++++++|||+||++|+++...||+.++++|+|
T Consensus 7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv 86 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV 86 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence 48999999999999999999999999998888887 88889999999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
||++=..+|+-+..|+.++..+.. .++--|+|+||+|+. +.++++....+.+.+....-|+++||++.+|++.+|..+
T Consensus 87 ydiscqpsfdclpewlreie~yan-~kvlkilvgnk~d~~-drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~ 164 (213)
T KOG0095|consen 87 YDISCQPSFDCLPEWLREIEQYAN-NKVLKILVGNKIDLA-DRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDL 164 (213)
T ss_pred EecccCcchhhhHHHHHHHHHHhh-cceEEEeeccccchh-hhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHH
Confidence 999999999999999999998754 356678999999997 677888888999999877888999999999999999988
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
+-.+
T Consensus 165 a~rl 168 (213)
T KOG0095|consen 165 ACRL 168 (213)
T ss_pred HHHH
Confidence 7654
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=6.8e-27 Score=194.58 Aligned_cols=169 Identities=28% Similarity=0.510 Sum_probs=143.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
.||+++|++|+|||||++++..+.+...+.++..+.....+..++..+.+.+||++|++.+...+..+++.+|+++++||
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988888777777776666677788888889999999999998888888899999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC---------CCCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504 185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH---------QREVPTLDGQALAQSWGC-PFIEASAKNKT 253 (286)
Q Consensus 185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 253 (286)
+++.++++.+. .|+..+... .+++|+++|+||+|+.+. .+.+...+...+++..+. ++++|||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999997 588877653 347999999999998532 234556677888888884 89999999999
Q ss_pred cHHHHHHHHHHHhhcCCCCcCC
Q psy10504 254 NVNEMFAEIVREMNFNPEKDNA 275 (286)
Q Consensus 254 gv~~l~~~i~~~i~~~~~~~~~ 275 (286)
|++++|+++.+.+.........
T Consensus 160 ~v~~~f~~l~~~~~~~~~~~~~ 181 (187)
T cd04129 160 GVDDVFEAATRAALLVRKSEPG 181 (187)
T ss_pred CHHHHHHHHHHHHhcccCcccc
Confidence 9999999999888766655543
No 94
>KOG0081|consensus
Probab=99.95 E-value=4.9e-29 Score=193.63 Aligned_cols=164 Identities=29% Similarity=0.492 Sum_probs=147.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC---------CeEEEEEEEeCCCcccchhhhhhcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD---------KAPCVLEILDTAGTEQFASMRDLYI 173 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~---------~~~~~l~l~DtpG~~~~~~~~~~~~ 173 (286)
-+|.+.+|++|+||||++.++.+++|......|++ ++..+.+.+. +..+++++|||+||++|+++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 36788999999999999999999999888777766 5555555442 4568899999999999999999999
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
++|-+++++||+++..+|-+++.|+..+..+..+++..+++++||+|++ +.+.++..+...++.++++||+++||-+|.
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~-~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLE-DQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchh-hhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 9999999999999999999999999999998888899999999999998 788899999999999999999999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|+++..+.++..+.+
T Consensus 168 Nv~kave~LldlvM~ 182 (219)
T KOG0081|consen 168 NVEKAVELLLDLVMK 182 (219)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999988888776544
No 95
>KOG0393|consensus
Probab=99.95 E-value=8.8e-28 Score=197.02 Aligned_cols=167 Identities=33% Similarity=0.560 Sum_probs=152.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+|++++|+.++|||+|+..+..+.|+..|.||..+.....+.++ +..+.+.+|||+||++|+.+|...|.++|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 5689999999999999999999999999999999999999999995 999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504 182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWG-CPFIEAS 248 (286)
Q Consensus 182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~-~~~~~vS 248 (286)
||++.++.+++++. .|+.++.++ +|++|+|+|++|.||.++. ..+..++.+.++++.| ..|++||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS 160 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS 160 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence 99999999999976 488888874 5899999999999998431 3577888999999999 7899999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCC
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~~ 271 (286)
|++..|++++|+..+..+...++
T Consensus 161 a~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 161 ALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhhCCcHHHHHHHHHHHhcccc
Confidence 99999999999999999876654
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=6.9e-27 Score=193.65 Aligned_cols=157 Identities=16% Similarity=0.266 Sum_probs=123.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|+++||||||++++..+.+.. +.||++... ..+..+ .+.+++||+||+++++.+|..+++++|++|+
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~-~~pt~g~~~-~~~~~~--~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCcc-ccCCcceeE-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 356899999999999999999999877753 566665332 334444 4559999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC--------CEEEEeCCCCC
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC--------PFIEASAKNKT 253 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~vSa~~~~ 253 (286)
|+|++++.+++++..++..+......+++|++||+||+|+++. ... +.+.+..++ .++++||++|+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~---~~~---~~~~~~l~l~~~~~~~~~~~~~Sa~~g~ 164 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA---MNA---AEITDKLGLHSLRQRHWYIQSTCATSGE 164 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC---CCH---HHHHHHhCccccCCCceEEEeccCCCCC
Confidence 9999999999988887776654333457999999999999732 222 233333332 35689999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++|+||++.+..
T Consensus 165 gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 165 GLYEGLDWLSNNIAN 179 (181)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988764
No 97
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=5.6e-27 Score=191.87 Aligned_cols=156 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|+|||||++++..+.+.. +.+|++... ..+.. ..+.+++|||||++++..++..+++++|++++
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~-~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV-ETVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccce-EEEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 356899999999999999999998877654 455654332 23333 34569999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~ 256 (286)
|||++++.+++++..|+..+......+++|+++|+||+|+.+ .....+.+...+. ..++++++||++|.|++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD---AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc---CCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999999988877766533345789999999999862 1233444443221 22468999999999999
Q ss_pred HHHHHHHH
Q psy10504 257 EMFAEIVR 264 (286)
Q Consensus 257 ~l~~~i~~ 264 (286)
++|+||.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999975
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=7.8e-27 Score=191.05 Aligned_cols=159 Identities=20% Similarity=0.232 Sum_probs=126.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|+++||||||++++.++.+.. +.+|++... ..+..+ .+.+.+|||||++++..++..+++.+|++++|+|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~-~~~~~~--~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 76 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNV-ETVEYK--NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDS 76 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeE-EEEEEC--CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeC
Confidence 68999999999999999999987654 566654222 234444 45589999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC------CCEEEEeCCCCCcHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG------CPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~l~ 259 (286)
+++.+++++..|+..+.......+.|+++|+||+|+.+ ..+..+...+..... +.+++|||++|.|++++|
T Consensus 77 s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f 153 (169)
T cd04158 77 SHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG---ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGL 153 (169)
T ss_pred CcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc---CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHH
Confidence 99999999999988887644445689999999999962 244455555443222 257899999999999999
Q ss_pred HHHHHHhhcCCC
Q psy10504 260 AEIVREMNFNPE 271 (286)
Q Consensus 260 ~~i~~~i~~~~~ 271 (286)
+||++.+.+...
T Consensus 154 ~~l~~~~~~~~~ 165 (169)
T cd04158 154 DWLSRQLVAAGV 165 (169)
T ss_pred HHHHHHHhhccc
Confidence 999998876553
No 99
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.95 E-value=3.5e-26 Score=186.48 Aligned_cols=162 Identities=31% Similarity=0.539 Sum_probs=138.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++..+.+...+.++.+ +.....+.+++..+.+.+||+||++.|...+..+++.+|++++
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 458999999999999999999998877766666554 4556677888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+.......+.+....+++++||++|.|++++|++
T Consensus 86 v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~-~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 86 TYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLA-ERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 999999999999999988876643 3478999999999987 44555556667777777789999999999999999999
Q ss_pred HHHHh
Q psy10504 262 IVREM 266 (286)
Q Consensus 262 i~~~i 266 (286)
|.+.+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98754
No 100
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=3.2e-26 Score=186.89 Aligned_cols=158 Identities=33% Similarity=0.595 Sum_probs=135.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||+++|.++.+...+.++..+........++..+.+++|||||++++..++..+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999999988888888877777778888888899999999999999889999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCCC----------CCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504 185 LTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQR----------EVPTLDGQALAQSWGC-PFIEASAKNK 252 (286)
Q Consensus 185 ~~~~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~-~~~~vSa~~~ 252 (286)
++++.++..... |+..+... .+++|+++|+||+|+.+... .+...+...+....+. +++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 158 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQ 158 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCC
Confidence 999998887654 66666653 24899999999999974432 3356667777777876 9999999999
Q ss_pred CcHHHHHHHHHH
Q psy10504 253 TNVNEMFAEIVR 264 (286)
Q Consensus 253 ~gv~~l~~~i~~ 264 (286)
.|+++++++|++
T Consensus 159 ~gi~~l~~~i~~ 170 (171)
T cd00157 159 EGVKEVFEEAIR 170 (171)
T ss_pred CCHHHHHHHHhh
Confidence 999999999875
No 101
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.95 E-value=1.4e-26 Score=190.15 Aligned_cols=158 Identities=18% Similarity=0.276 Sum_probs=124.2
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+.+..++|+++|++|||||||++++.+..+ ..+.+|.+ +....+.+++ +.+.+|||||++.++.++..+++.+|++
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~--~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDI-DTISPTLG-FQIKTLEYEG--YKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCC-CCcCCccc-cceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 344668999999999999999999998744 34555554 3334455554 4589999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN 254 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g 254 (286)
++|+|++++.++++...|+..+.......++|+++|+||+|+.... ...+.....+ ..+++++++||++|.|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 162 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL---SEEEIREALELDKISSHHWRIQPCSAVTGEG 162 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC---CHHHHHHHhCccccCCCceEEEeccCCCCcC
Confidence 9999999999999988888777654444689999999999997322 3333333332 2346899999999999
Q ss_pred HHHHHHHHHH
Q psy10504 255 VNEMFAEIVR 264 (286)
Q Consensus 255 v~~l~~~i~~ 264 (286)
++++|+++++
T Consensus 163 i~~l~~~l~~ 172 (173)
T cd04154 163 LLQGIDWLVD 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 102
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.95 E-value=2.3e-26 Score=186.47 Aligned_cols=153 Identities=16% Similarity=0.254 Sum_probs=118.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|.++||||||++++..+.+.. +.+|++... ..+..+ .+.+.+|||||++++..++..+++++|++++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D 76 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV-ETVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 489999999999999999998887764 666665332 234443 4559999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHH----hcCCCEEEEeCCCCCcHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQ----SWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++++.++++...++..+.......+.|+++++||+|+.+. ....+. ..+.. ...+.++++||++|+|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~ 153 (159)
T cd04150 77 SNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA---MSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGL 153 (159)
T ss_pred CCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC---CCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHH
Confidence 9999999999887777754333346899999999999632 112221 22211 112457899999999999999
Q ss_pred HHHHH
Q psy10504 260 AEIVR 264 (286)
Q Consensus 260 ~~i~~ 264 (286)
+||.+
T Consensus 154 ~~l~~ 158 (159)
T cd04150 154 DWLSN 158 (159)
T ss_pred HHHhc
Confidence 99864
No 103
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.95 E-value=1.3e-26 Score=190.99 Aligned_cols=157 Identities=15% Similarity=0.223 Sum_probs=121.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..+||+++|++|+|||||++++..+.+.. +.+|++... ..+..+ .+.+.+|||||++++..++..+++++|++|+|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~-~~~t~~~~~-~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v 87 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT-TIPTIGFNV-ETVTYK--NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFV 87 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccccce-EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 46899999999999999999998777743 556665332 233444 35599999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 257 (286)
+|++++.++++...|+..+......+++|++||+||+|+.+.. ...+...... ...+.++++||++|.|+++
T Consensus 88 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e 164 (175)
T smart00177 88 VDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM---KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE 164 (175)
T ss_pred EECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC---CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence 9999999999998888877653334578999999999996322 2222222111 1123467899999999999
Q ss_pred HHHHHHHHh
Q psy10504 258 MFAEIVREM 266 (286)
Q Consensus 258 l~~~i~~~i 266 (286)
+|+||.+.+
T Consensus 165 ~~~~l~~~~ 173 (175)
T smart00177 165 GLTWLSNNL 173 (175)
T ss_pred HHHHHHHHh
Confidence 999998765
No 104
>KOG0083|consensus
Probab=99.95 E-value=2.6e-28 Score=184.46 Aligned_cols=160 Identities=34% Similarity=0.595 Sum_probs=143.7
Q ss_pred EECCCCCcHHHHHHHHhcCcCCCc-cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC
Q psy10504 109 VLGSGGVGKSALTVQFVSGCFMEK-YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~ 186 (286)
++|++++|||+|+-++.++.|... ...|.+ ++..+.+..++..+++++|||+||++|++....||+++|+.+++||+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 689999999999999999888654 344444 666777889999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 187 NHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 187 ~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
+..||+++..|+..+..+. ...+.+.+++||+|+. .++.+...+.+.+++.+++|+.++||++|.|++..|-.|.+.+
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a-~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLA-HERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEEL 159 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccc-hhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHH
Confidence 9999999999999998864 3478899999999997 6788888999999999999999999999999999999999988
Q ss_pred hcCC
Q psy10504 267 NFNP 270 (286)
Q Consensus 267 ~~~~ 270 (286)
++..
T Consensus 160 ~k~~ 163 (192)
T KOG0083|consen 160 KKLK 163 (192)
T ss_pred HHhc
Confidence 7643
No 105
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.95 E-value=6.3e-26 Score=181.70 Aligned_cols=158 Identities=41% Similarity=0.699 Sum_probs=136.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|++++|||||++++.++.+...+.+|.+ +.....+..++..+.+.+||+||+..+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4899999999999999999999988877666654 445566777777788999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+.... ..+.|+++++||+|+. ........+...+....+.+++++||+++.|+++++++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLE-DQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEccccc-ccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 9999999999999998888753 2579999999999996 3455566777888888889999999999999999999986
Q ss_pred H
Q psy10504 264 R 264 (286)
Q Consensus 264 ~ 264 (286)
+
T Consensus 159 ~ 159 (159)
T cd00154 159 E 159 (159)
T ss_pred C
Confidence 3
No 106
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=3.9e-26 Score=189.38 Aligned_cols=162 Identities=19% Similarity=0.279 Sum_probs=125.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..+||+++|++|||||||++++..+.+... .+|.+ +.....+.. ++..+.+.+|||||++++..++..+++++|+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 358999999999999999999998877654 44443 222333333 335677999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------cCCCEEEEeCCCCCc
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------WGCPFIEASAKNKTN 254 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~vSa~~~~g 254 (286)
+|+|++++.+++....|+..+.......++|+++|+||+|+.. .....+.+.+... .+++++++||++|.|
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~g 157 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN---ALSVSEVEKLLALHELSASTPWHVQPACAIIGEG 157 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc---cCCHHHHHHHhCccccCCCCceEEEEeecccCCC
Confidence 9999999999998888888777655455899999999999862 1223333333221 124688999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
+++++++|++.+.+
T Consensus 158 i~~l~~~l~~~l~~ 171 (183)
T cd04152 158 LQEGLEKLYEMILK 171 (183)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988743
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=4.8e-26 Score=188.74 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=121.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..+||+++|+++||||||++++..+.+.. +.+|++... ..+..+ .+.+++|||||+++++.++..+++++|++|+|
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~-~~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v 91 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNV-ETVEYK--NLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFV 91 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccce-EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 45899999999999999999998877764 556665332 334444 45599999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~~ 257 (286)
+|++++.++++...++..+.......++|+++|+||.|+.+.. ...+....... ..+.++++||++|.|+++
T Consensus 92 ~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e 168 (182)
T PTZ00133 92 VDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM---STTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE 168 (182)
T ss_pred EeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC---CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence 9999999999888777766543333478999999999986321 22222111111 113467899999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
+|++|.+.+.+
T Consensus 169 ~~~~l~~~i~~ 179 (182)
T PTZ00133 169 GLDWLSANIKK 179 (182)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=8.5e-27 Score=190.03 Aligned_cols=153 Identities=20% Similarity=0.372 Sum_probs=123.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
.|+++|++|||||||++++.++.+...+.+|.+.. . ..+++..+.+.+||+||+++++.++..+++++|++++|||+
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~-~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFN-S--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcc-e--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 37999999999999999999998888888887632 2 23444556699999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH----HHHHHHHHhcCCCEEEEeCCC------CCcH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT----LDGQALAQSWGCPFIEASAKN------KTNV 255 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~~~vSa~~------~~gv 255 (286)
+++.++...+.|+..+... .+++|+++|+||+|+.. .+.... .+...+++..++.++++||++ ++|+
T Consensus 78 t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 78 ADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPA-ARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred CCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcC-CCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 9999999998888877643 25899999999999973 232211 223445555678889999998 9999
Q ss_pred HHHHHHHHH
Q psy10504 256 NEMFAEIVR 264 (286)
Q Consensus 256 ~~l~~~i~~ 264 (286)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998764
No 109
>KOG0097|consensus
Probab=99.94 E-value=4.2e-26 Score=174.18 Aligned_cols=164 Identities=33% Similarity=0.492 Sum_probs=150.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+|-+++|+-|+|||+|++++...+|..+.+.|++ ++....+.+.+..+++++|||+|+++|+...+.|++.+.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 568999999999999999999999999999998887 6667788899999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++.+.++..+..|+...... ..|+.-+++++||.|+. +.+.+..++...++++.|..++++||++|+++++.|-.
T Consensus 90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle-~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLE-SQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhh-hcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999999999987774 56788899999999998 78889999999999999999999999999999998876
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
-.+++-+
T Consensus 168 ~akkiyq 174 (215)
T KOG0097|consen 168 TAKKIYQ 174 (215)
T ss_pred HHHHHHH
Confidence 6666544
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.94 E-value=2e-25 Score=182.10 Aligned_cols=161 Identities=27% Similarity=0.345 Sum_probs=125.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|||||||++++..+.+...++.+. ........+++..+.+.+|||||++.+...+..++..+|++++|||
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVL-PEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYS 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcc-cceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEE
Confidence 489999999999999999999998876655443 3334445666777889999999999888888888899999999999
Q ss_pred CCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHH
Q psy10504 185 LTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQSWG--CPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 185 ~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~ 260 (286)
++++.+++.+. .|...+.... +++|+++|+||+|+.+..... ...+...+.+.+. .++++|||++|.|++++|+
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~ 157 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFY 157 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHH
Confidence 99999999986 5666666532 489999999999997332211 1222333333333 4799999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
.+.+.+..
T Consensus 158 ~~~~~~~~ 165 (166)
T cd01893 158 YAQKAVLH 165 (166)
T ss_pred HHHHHhcC
Confidence 99887653
No 111
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.94 E-value=3.3e-26 Score=185.13 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=116.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+|+++|++|||||||++++.++. +...+.+|++.. ...+..+ .+.+++|||||++++..++..+++.+|++++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~-~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 77 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFN-VESFEKG--NLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVID 77 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccc-eEEEEEC--CEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEe
Confidence 58999999999999999999875 455666776532 2233333 4558999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HH--hcCCCEEEEeCCCCCcHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQREVPTLDGQAL---AQ--SWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~--~~~~~~~~vSa~~~~gv~~ 257 (286)
++++.++.....|+..+.... ...++|+++|+||+|+.+... ..+.... .. ...++++++||++|.|+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~ 154 (162)
T cd04157 78 SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT---AVKITQLLGLENIKDKPWHIFASNALTGEGLDE 154 (162)
T ss_pred CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC---HHHHHHHhCCccccCceEEEEEeeCCCCCchHH
Confidence 999999988888877765532 124799999999999973221 1221111 11 1124589999999999999
Q ss_pred HHHHHHH
Q psy10504 258 MFAEIVR 264 (286)
Q Consensus 258 l~~~i~~ 264 (286)
+|++|.+
T Consensus 155 ~~~~l~~ 161 (162)
T cd04157 155 GVQWLQA 161 (162)
T ss_pred HHHHHhc
Confidence 9999865
No 112
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.94 E-value=7.2e-26 Score=185.06 Aligned_cols=155 Identities=20% Similarity=0.292 Sum_probs=121.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
+|+++|++|||||||++++.+. +...+.+|.+.. ...+..++ +.+++||+||+++++.++..+++++|++++|||+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~ 76 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT-PTKLRLDK--YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce-EEEEEECC--EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEEC
Confidence 4899999999999999999976 666677776643 34555554 4589999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHhcC--CCEEEEeCCCC------Cc
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD---GQALAQSWG--CPFIEASAKNK------TN 254 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~vSa~~~------~g 254 (286)
+++.+++++..|+..+.......++|+++|+||+|+++........+ .+.+++..+ +.+++|||++| .|
T Consensus 77 s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g 156 (167)
T cd04161 77 SDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPS 156 (167)
T ss_pred CchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccC
Confidence 99999999999988887654445899999999999973322111111 122222222 56788999998 89
Q ss_pred HHHHHHHHHH
Q psy10504 255 VNEMFAEIVR 264 (286)
Q Consensus 255 v~~l~~~i~~ 264 (286)
+++.|+||..
T Consensus 157 ~~~~~~wl~~ 166 (167)
T cd04161 157 IVEGLRWLLA 166 (167)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 113
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.93 E-value=1.4e-24 Score=184.65 Aligned_cols=166 Identities=30% Similarity=0.545 Sum_probs=139.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
....+||+++|++|||||||+++++.+.+...+.+|.+ +.....+..++..+.+.+|||+|+++|..++..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 44669999999999999999999998888888877776 33344555678888999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|||+++..++..+..|+..+.... +++|+++++||+|+.+ +..... ...+.+..++.++++||++|.|++++|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~--~~~~~~-~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD--RQVKAR-QITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc--ccCCHH-HHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999998887643 5799999999999862 222222 335666778899999999999999999
Q ss_pred HHHHHHhhcCCC
Q psy10504 260 AEIVREMNFNPE 271 (286)
Q Consensus 260 ~~i~~~i~~~~~ 271 (286)
.+|++.+...+.
T Consensus 161 ~~ia~~l~~~p~ 172 (215)
T PTZ00132 161 LWLARRLTNDPN 172 (215)
T ss_pred HHHHHHHhhccc
Confidence 999999876554
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.93 E-value=3e-25 Score=182.53 Aligned_cols=155 Identities=21% Similarity=0.292 Sum_probs=120.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..+||+++|++|+|||||++++..+.+.. +.+|.+... ..+..++ +.+.+||+||++++...+..+++.+|++++|
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV-EEIVYKN--IRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce-EEEEECC--eEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 45899999999999999999999887765 455554332 3444554 4589999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHH----HhcCCCEEEEeCCCCCcHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALA----QSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~----~~~~~~~~~vSa~~~~gv~~ 257 (286)
+|++++.++.....++..+.......++|+++++||+|+... .+..+. +.+. +..++++++|||++|.|+++
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~---~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e 166 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA---MTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPE 166 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEecccCCCCCHHH
Confidence 999999888888877777655433457999999999998631 122222 2221 12345789999999999999
Q ss_pred HHHHHHH
Q psy10504 258 MFAEIVR 264 (286)
Q Consensus 258 l~~~i~~ 264 (286)
+|++|.+
T Consensus 167 ~~~~l~~ 173 (174)
T cd04153 167 GLDWIAS 173 (174)
T ss_pred HHHHHhc
Confidence 9999975
No 115
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.93 E-value=5.2e-25 Score=183.36 Aligned_cols=158 Identities=20% Similarity=0.285 Sum_probs=124.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+..||+++|++|||||||++++.++.+. .+.+|.+. ....+.+++.. +.+||+||+..+..++..+++.+|++++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~-~~~~i~~~~~~--~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHP-TSEELTIGNIK--FKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCc-ceEEEEECCEE--EEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35789999999999999999999987764 45555543 33455666644 8899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----------------cCCCEE
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----------------WGCPFI 245 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 245 (286)
|+|+++..+++....++..+.......+.|+++++||+|+.. .....+.+..... ..++++
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG---AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVF 169 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC---CcCHHHHHHHhCcccccccccccccccCceeEEEE
Confidence 999999988888888887776544445799999999999862 3334444444322 124689
Q ss_pred EEeCCCCCcHHHHHHHHHHHh
Q psy10504 246 EASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~i 266 (286)
+|||++|+|++++|+||.+.+
T Consensus 170 ~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 170 MCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EeEecCCCChHHHHHHHHhhC
Confidence 999999999999999998753
No 116
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.93 E-value=1.1e-25 Score=181.92 Aligned_cols=152 Identities=16% Similarity=0.226 Sum_probs=113.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|++++|||||++++..+.+.. +.+|++.. ...+...+ +.+++|||||++.+..++..+++.+|++++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~ 76 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFN-VETVTYKN--LKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDS 76 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEEC
Confidence 68999999999999999998877654 44554422 22344443 4589999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHH----hcCCCEEEEeCCCCCcHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQ----SWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+++.++.....++..+.+.....++|+++|+||+|+.+.. ...+. ..+.. ..+.+++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 153 (158)
T cd04151 77 TDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL---SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC---CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHH
Confidence 9988877766666554432333579999999999986322 11222 11111 1124699999999999999999
Q ss_pred HHHH
Q psy10504 261 EIVR 264 (286)
Q Consensus 261 ~i~~ 264 (286)
+|++
T Consensus 154 ~l~~ 157 (158)
T cd04151 154 WLVN 157 (158)
T ss_pred HHhc
Confidence 9975
No 117
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.93 E-value=1.8e-25 Score=180.68 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=117.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
+|+++|++|+|||||++++.++.+... .+|.+.. ...+... ..+.+.+|||||++.+..++..+++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~-~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~ 77 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFN-VEMLQLE-KHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDS 77 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcc-eEEEEeC-CceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 589999999999999999999887643 4454422 2333333 346699999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH------HHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL------AQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
+++.++.....|+..+.......+.|+++|+||+|+.... ...+.... ....++++++|||++|+|++++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 154 (160)
T cd04156 78 SDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL---TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAF 154 (160)
T ss_pred CcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc---CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHH
Confidence 9999899888888777654333589999999999996221 12222111 11123568999999999999999
Q ss_pred HHHHH
Q psy10504 260 AEIVR 264 (286)
Q Consensus 260 ~~i~~ 264 (286)
++|.+
T Consensus 155 ~~i~~ 159 (160)
T cd04156 155 RKLAS 159 (160)
T ss_pred HHHhc
Confidence 99864
No 118
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.93 E-value=6.5e-25 Score=178.65 Aligned_cols=153 Identities=28% Similarity=0.360 Sum_probs=116.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC------CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+|+++|++|+|||||++++.+... ...+.+|.+.. ...+.+++. .+.+|||||++.+..++..+++.+|++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 77 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLN-IGTIEVGNA--RLKFWDLGGQESLRSLWDKYYAECHAI 77 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccc-eEEEEECCE--EEEEEECCCChhhHHHHHHHhCCCCEE
Confidence 589999999999999999986422 12233333322 234555544 489999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-------cCCCEEEEeCCCC
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-------WGCPFIEASAKNK 252 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~~~~~vSa~~~ 252 (286)
++|+|++++.++.....|+..+.......++|+++++||+|+... ....+.....+. .+++++++||++|
T Consensus 78 v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 154 (167)
T cd04160 78 IYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA---LSVEEIKEVFQDKAEEIGRRDCLVLPVSALEG 154 (167)
T ss_pred EEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC---CCHHHHHHHhccccccccCCceEEEEeeCCCC
Confidence 999999999888888888887766544568999999999998632 222333333222 2357999999999
Q ss_pred CcHHHHHHHHHH
Q psy10504 253 TNVNEMFAEIVR 264 (286)
Q Consensus 253 ~gv~~l~~~i~~ 264 (286)
.|++++++||.+
T Consensus 155 ~gv~e~~~~l~~ 166 (167)
T cd04160 155 TGVREGIEWLVE 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 999999999975
No 119
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=3.2e-24 Score=178.12 Aligned_cols=157 Identities=17% Similarity=0.215 Sum_probs=120.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.++|+++|.+|||||||++++.++.+.. +.+|.+. ....+..++ +.+.+||+||++.++.++..+++++|++++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHP-TSEELAIGN--IKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCcccc-ceEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 356899999999999999999999876643 3344332 233444554 448899999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------------cCCCEEEEeC
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------------WGCPFIEASA 249 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~vSa 249 (286)
|+|++++.+++....++..+.......++|+++|+||+|++. ..+..+....... ....+++|||
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~---~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa 167 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY---AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSV 167 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC---CCCHHHHHHHcCCCcccccccccCCceeEEEEeec
Confidence 999999998988888777766543445899999999999862 2233333322110 1245899999
Q ss_pred CCCCcHHHHHHHHHHH
Q psy10504 250 KNKTNVNEMFAEIVRE 265 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~ 265 (286)
++|.|++++++||.++
T Consensus 168 ~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 168 VRRMGYGEGFKWLSQY 183 (184)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999875
No 120
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.92 E-value=3.5e-24 Score=179.99 Aligned_cols=148 Identities=22% Similarity=0.333 Sum_probs=122.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEEC-----CeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVD-----KAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~-----~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
+||+++|+.++|||||++++..+.+...+.+|++. .....+.++ +..+.+.+|||+|+++|..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999999999888888863 333445553 567889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHh------------------CCCCCcEEEEEeCCCCCCCCCCCCHH----HHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVK------------------GSERVPILLVANKLDLASHQREVPTL----DGQAL 236 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~piivv~nK~Dl~~~~~~~~~~----~~~~~ 236 (286)
+|+|||++++.+++++..|+..+.... ...++|+++|+||.|+.+ ++..... ....+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~-~r~~~~~~~~~~~~~i 159 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP-EKESSGNLVLTARGFV 159 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh-hcccchHHHhhHhhhH
Confidence 999999999999999999999987632 224789999999999973 3332222 34567
Q ss_pred HHhcCCCEEEEeCCCCC
Q psy10504 237 AQSWGCPFIEASAKNKT 253 (286)
Q Consensus 237 ~~~~~~~~~~vSa~~~~ 253 (286)
+++.+.+.++.++++..
T Consensus 160 a~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 160 AEQGNAEEINLNCTNGR 176 (202)
T ss_pred HHhcCCceEEEecCCcc
Confidence 88899999999998653
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.92 E-value=5e-24 Score=175.54 Aligned_cols=158 Identities=26% Similarity=0.394 Sum_probs=127.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+..+|+++|..||||||+++++..+.+.. ..||.+ +....+.+.+.. +.+||.+|+..++.+|..|++++|++|+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g-~~~~~i~~~~~~--~~~~d~gG~~~~~~~w~~y~~~~~~iIf 87 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIG-FNIEEIKYKGYS--LTIWDLGGQESFRPLWKSYFQNADGIIF 87 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESS-EEEEEEEETTEE--EEEEEESSSGGGGGGGGGGHTTESEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccc-cccceeeeCcEE--EEEEeccccccccccceeeccccceeEE
Confidence 478999999999999999999999865443 455554 344556666665 8999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH------hcCCCEEEEeCCCCCcH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ------SWGCPFIEASAKNKTNV 255 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~~vSa~~~~gv 255 (286)
|+|++|...+.+....+..+.......++|++|++||+|+++. ....+...... ...+.++.|||.+|+|+
T Consensus 88 VvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~---~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv 164 (175)
T PF00025_consen 88 VVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA---MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGV 164 (175)
T ss_dssp EEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS---STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTH
T ss_pred EEecccceeecccccchhhhcchhhcccceEEEEeccccccCc---chhhHHHhhhhhhhcccCCceEEEeeeccCCcCH
Confidence 9999999999999888888776555568999999999998732 23333333222 12355899999999999
Q ss_pred HHHHHHHHHHh
Q psy10504 256 NEMFAEIVREM 266 (286)
Q Consensus 256 ~~l~~~i~~~i 266 (286)
.+.++||.+.+
T Consensus 165 ~e~l~WL~~~~ 175 (175)
T PF00025_consen 165 DEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.92 E-value=2e-24 Score=174.28 Aligned_cols=152 Identities=18% Similarity=0.283 Sum_probs=118.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
||+++|++|+|||||+++++++.+ ..+.++.+. ....+.+.+ +.+.+||+||++.+...+..+++.+|++++|||+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~-~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~ 76 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGF-NVETVEYKN--VSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDS 76 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCc-ceEEEEECC--EEEEEEECCCChhhHHHHHHHhccCCEEEEEEEC
Confidence 689999999999999999999873 334444432 233344444 4589999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+++.++.....|+..+.......+.|+++|+||+|+.... ...+...... ...++++++||++|.|++++|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~ 153 (158)
T cd00878 77 SDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL---SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLD 153 (158)
T ss_pred CCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc---CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHH
Confidence 9999999998888877665445689999999999987322 1222222211 2336799999999999999999
Q ss_pred HHHH
Q psy10504 261 EIVR 264 (286)
Q Consensus 261 ~i~~ 264 (286)
+|..
T Consensus 154 ~l~~ 157 (158)
T cd00878 154 WLLQ 157 (158)
T ss_pred HHhh
Confidence 9875
No 123
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.92 E-value=6.1e-24 Score=174.97 Aligned_cols=154 Identities=20% Similarity=0.271 Sum_probs=113.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCcc-------ceEE--EEEEE---CCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIE-------DFYR--KEIEV---DKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~-------~~~~--~~~~~---~~~~~~l~l~DtpG~~~~~ 166 (286)
+|+++|++++|||||+++|++.. +...+.++.. +... ..+.+ ++..+.+++|||||+++|.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998732 1122222210 1111 12222 5667779999999999999
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC---C
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC---P 243 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~ 243 (286)
.++..+++.+|++++|+|++++.+.+....|..... .++|+++|+||+|+.+. . .......+++..++ .
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~-----~~~~iiiv~NK~Dl~~~-~--~~~~~~~~~~~~~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE-----NNLEIIPVINKIDLPSA-D--PERVKQQIEDVLGLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH-----cCCCEEEEEECCCCCcC-C--HHHHHHHHHHHhCCCccc
Confidence 999999999999999999999877777666644322 27899999999998631 1 12223455555565 4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
++++||++|.|++++|+++.+.++
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhCC
Confidence 899999999999999999998764
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.92 E-value=6.3e-24 Score=170.23 Aligned_cols=153 Identities=20% Similarity=0.306 Sum_probs=120.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
.|+++|++|+|||||++++.+..+...+.++.+... ..+..++ +.+.+||+||++.+..++..+++.+|++++|+|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNM-RKVTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcce-EEEEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 379999999999999999999988888888776333 2344444 5599999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HH----HHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-AL----AQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
++..++.....++..+.......++|+++|+||+|+.... . ..+.. .+ ......+++++||++|.|++++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 154 (159)
T cd04159 78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-S--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLD 154 (159)
T ss_pred CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-C--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHHH
Confidence 9988888887777776654444588999999999986321 1 11111 11 111235789999999999999999
Q ss_pred HHHH
Q psy10504 261 EIVR 264 (286)
Q Consensus 261 ~i~~ 264 (286)
+|.+
T Consensus 155 ~l~~ 158 (159)
T cd04159 155 WLIK 158 (159)
T ss_pred HHhh
Confidence 9975
No 125
>PTZ00099 rab6; Provisional
Probab=99.91 E-value=2.8e-23 Score=171.13 Aligned_cols=144 Identities=33% Similarity=0.502 Sum_probs=125.6
Q ss_pred CcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHh
Q psy10504 127 GCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK 205 (286)
Q Consensus 127 ~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~ 205 (286)
+.|...+.+|++ ++....+.+++..+.+.||||||++++..++..+++++|++|+|||++++.+++.+..|+..+....
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 456778888887 6666778889999999999999999999999999999999999999999999999999999887643
Q ss_pred CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 206 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
.+++|+++|+||+|+. ..+.+...+...++...++.+++|||++|.|++++|++|++.+++.++.
T Consensus 83 -~~~~piilVgNK~DL~-~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 83 -GKDVIIALVGNKTDLG-DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred -CCCCeEEEEEECcccc-cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 3578999999999997 3455677778888888889999999999999999999999999875544
No 126
>KOG0073|consensus
Probab=99.91 E-value=1.4e-23 Score=164.20 Aligned_cols=164 Identities=23% Similarity=0.321 Sum_probs=133.0
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..++++|.++|..|+||||++++|.+.. ++...||. .+...++.+++.+ +++||.+||..+++.|+.|+..+|++|
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~-gf~Iktl~~~~~~--L~iwDvGGq~~lr~~W~nYfestdglI 88 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTL-GFQIKTLEYKGYT--LNIWDVGGQKTLRSYWKNYFESTDGLI 88 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCcc-ceeeEEEEecceE--EEEEEcCCcchhHHHHHHhhhccCeEE
Confidence 3468999999999999999999998764 33334443 4555666666666 999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
+|+|++|+..+++....+..+..-....+.|++|++||.|+++.-.. ......+.+++...++++.|||.+|+++.+
T Consensus 89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~ 168 (185)
T KOG0073|consen 89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE 168 (185)
T ss_pred EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence 99999999999998887777665555568999999999999733221 122334555667779999999999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
.++|+++.+.+
T Consensus 169 gidWL~~~l~~ 179 (185)
T KOG0073|consen 169 GIDWLCDDLMS 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 127
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.91 E-value=3.7e-23 Score=168.42 Aligned_cols=155 Identities=15% Similarity=0.196 Sum_probs=107.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh---------hhhccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM---------RDLYIK 174 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~---------~~~~~~ 174 (286)
++|+++|++|+|||||++++.+..+.. .++.++.+........++ +.+++|||||+...... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKY--LRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCc--eEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 479999999999999999999987642 233333333333333333 45999999998431110 001122
Q ss_pred CccEEEEEEECCCccc--HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 175 NGQGFVVVYSLTNHHT--FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
.+|++++|+|+++..+ ++....|+..+... ..+.|+++|+||+|+.. ..... ....+....+.+++++||++|
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~-~~~~~--~~~~~~~~~~~~~~~~Sa~~~ 153 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLT-FEDLS--EIEEEEELEGEEVLKISTLTE 153 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCc-hhhHH--HHHHhhhhccCceEEEEeccc
Confidence 3689999999998765 35566677776553 24789999999999973 22221 134445555688999999999
Q ss_pred CcHHHHHHHHHHHh
Q psy10504 253 TNVNEMFAEIVREM 266 (286)
Q Consensus 253 ~gv~~l~~~i~~~i 266 (286)
.|++++++++.+.+
T Consensus 154 ~gi~~l~~~l~~~~ 167 (168)
T cd01897 154 EGVDEVKNKACELL 167 (168)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999875
No 128
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=4.8e-23 Score=168.02 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=112.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhc---ccCcc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLY---IKNGQ 177 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~---~~~~d 177 (286)
.|+++|++|||||||++++.+.... ...++++.+.....+..++. ..+.+|||||+. .+..+...+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG-RSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC-CeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 5899999999999999999975442 23333433333344445554 248999999974 222233333 34699
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCc
Q psy10504 178 GFVVVYSLTNH-HTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTN 254 (286)
Q Consensus 178 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~g 254 (286)
++++|+|++++ .+++.+..|...+..... ..++|+++|+||+|+.+. ... ......+... .+.+++++||+++.|
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~-~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE-EEL-FELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc-hhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 99999999999 789998888888776431 247899999999999632 222 2333344444 368899999999999
Q ss_pred HHHHHHHHHHH
Q psy10504 255 VNEMFAEIVRE 265 (286)
Q Consensus 255 v~~l~~~i~~~ 265 (286)
++++|+++.+.
T Consensus 159 i~~l~~~i~~~ 169 (170)
T cd01898 159 LDELLRKLAEL 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 129
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=6.2e-23 Score=168.03 Aligned_cols=153 Identities=22% Similarity=0.319 Sum_probs=117.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.++|+++|++|+|||||++++.+..+.. +.++.+ .....+..++.. +.+||+||+.++...+..+++.+|++++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g-~~~~~i~~~~~~--~~~~D~~G~~~~~~~~~~~~~~~~~ii~ 87 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQG-FNIKTVQSDGFK--LNVWDIGGQRAIRPYWRNYFENTDCLIY 87 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCC-cceEEEEECCEE--EEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 357999999999999999999999875532 334433 223345556544 8899999999998889999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--------CCEEEEeCCCCC
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--------CPFIEASAKNKT 253 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~~~ 253 (286)
|+|+++..++.....++..+.......++|+++++||+|+.+.. .. +.+.+..+ .+++++||++|+
T Consensus 88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~---~~i~~~l~~~~~~~~~~~~~~~Sa~~~~ 161 (173)
T cd04155 88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA---PA---EEIAEALNLHDLRDRTWHIQACSAKTGE 161 (173)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC---CH---HHHHHHcCCcccCCCeEEEEEeECCCCC
Confidence 99999988888887777666554334579999999999986321 11 22223333 247899999999
Q ss_pred cHHHHHHHHHH
Q psy10504 254 NVNEMFAEIVR 264 (286)
Q Consensus 254 gv~~l~~~i~~ 264 (286)
|++++|+||++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 130
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2e-22 Score=181.26 Aligned_cols=164 Identities=18% Similarity=0.176 Sum_probs=124.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEE-CCeEEEEEEEeCCCccc----chhhh---hhcccC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEV-DKAPCVLEILDTAGTEQ----FASMR---DLYIKN 175 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~-~~~~~~l~l~DtpG~~~----~~~~~---~~~~~~ 175 (286)
..|+|+|.||||||||++++..... ...++.|+.......+.+ ++.. +++||+||..+ ...+. .+.++.
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~--~~i~D~PGli~ga~~~~gLg~~flrhie~ 236 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKS--FVIADIPGLIEGASEGAGLGHRFLKHIER 236 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcE--EEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence 4689999999999999999997543 466777777776766766 3445 88999999643 11233 334567
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 254 (286)
++++++|+|+++..+++++..|...+..+.. ..++|+++|+||+|+.+. ........+.+....+.+++++||++++|
T Consensus 237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~-~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE-EEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc-hhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 9999999999998889999999888877532 247899999999999732 22222334444455668999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q psy10504 255 VNEMFAEIVREMNFNPE 271 (286)
Q Consensus 255 v~~l~~~i~~~i~~~~~ 271 (286)
+++++++|.+.+.+.++
T Consensus 316 I~eL~~~L~~~l~~~~~ 332 (335)
T PRK12299 316 LDELLRALWELLEEARR 332 (335)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 99999999998876544
No 131
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.90 E-value=8.3e-23 Score=195.67 Aligned_cols=207 Identities=20% Similarity=0.224 Sum_probs=136.2
Q ss_pred ecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEEC
Q psy10504 36 ISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLG 111 (286)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ivG 111 (286)
|++.++.+|.+..+++.++. +...++.+........... ..... ....+.....+.++|+++|
T Consensus 28 ~~~~l~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~-~~~~~~~~~~r~p~V~I~G 94 (587)
T TIGR00487 28 IIKKLMLLGVMVTINQVLDKETAELVAEEFGVKVEVRVTLEET------------EAEEQ-DEDSGDLLVERPPVVTIMG 94 (587)
T ss_pred HHHHHHHCCCEecCCcCcCHHHHHHHHHHhCCceEEeccchhh------------hhhcc-ccccccccccCCCEEEEEC
Confidence 56778889988888777763 3333443322211110000 00000 0111223456778999999
Q ss_pred CCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc
Q psy10504 112 SGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT 190 (286)
Q Consensus 112 ~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s 190 (286)
++++|||||+++|.+..+...+.++++ +.....+.+++.. .++|||||||++|..++.+++..+|++++|+|++++..
T Consensus 95 hvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~-~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~ 173 (587)
T TIGR00487 95 HVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK-MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVM 173 (587)
T ss_pred CCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc-EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCC
Confidence 999999999999999887766555443 3333445554441 48999999999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-------HHhcC--CCEEEEeCCCCCcHHHHHHH
Q psy10504 191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-------AQSWG--CPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 191 ~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~--~~~~~vSa~~~~gv~~l~~~ 261 (286)
.+....+ ... ...++|+++++||+|+.+.. ....... ...++ .+++++||++|.|+++++++
T Consensus 174 ~qT~e~i----~~~-~~~~vPiIVviNKiDl~~~~----~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~ 244 (587)
T TIGR00487 174 PQTIEAI----SHA-KAANVPIIVAINKIDKPEAN----PDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM 244 (587)
T ss_pred HhHHHHH----HHH-HHcCCCEEEEEECcccccCC----HHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence 4433322 211 12378999999999996322 1112111 12222 57999999999999999999
Q ss_pred HHHH
Q psy10504 262 IVRE 265 (286)
Q Consensus 262 i~~~ 265 (286)
|...
T Consensus 245 I~~~ 248 (587)
T TIGR00487 245 ILLQ 248 (587)
T ss_pred hhhh
Confidence 9754
No 132
>KOG0070|consensus
Probab=99.90 E-value=4.2e-23 Score=165.52 Aligned_cols=166 Identities=18% Similarity=0.292 Sum_probs=133.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+...+.+|+++|..++||||++.+|..+.+... .||++. ....+.+.+.. |++||.+||++++.+|..|+++++++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGf-nVE~v~ykn~~--f~vWDvGGq~k~R~lW~~Y~~~t~~l 88 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGF-NVETVEYKNIS--FTVWDVGGQEKLRPLWKHYFQNTQGL 88 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCcccc-ceeEEEEcceE--EEEEecCCCcccccchhhhccCCcEE
Confidence 345789999999999999999999999888776 677753 34455666555 99999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH--hcCCCEEEEeCCCCCcHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ--SWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~vSa~~~~gv~~ 257 (286)
|+|+|.+|++.+.+.+..+..+.......+.|+++.+||.|++++-......+...+.. .....+..|+|.+|+|+.+
T Consensus 89 IfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~e 168 (181)
T KOG0070|consen 89 IFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYE 168 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHH
Confidence 99999999999999998888887766667899999999999984433211111111111 1235678999999999999
Q ss_pred HHHHHHHHhhcC
Q psy10504 258 MFAEIVREMNFN 269 (286)
Q Consensus 258 l~~~i~~~i~~~ 269 (286)
.++|+.+.+...
T Consensus 169 gl~wl~~~~~~~ 180 (181)
T KOG0070|consen 169 GLDWLSNNLKKR 180 (181)
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 133
>KOG4252|consensus
Probab=99.90 E-value=8.2e-25 Score=173.37 Aligned_cols=165 Identities=28% Similarity=0.483 Sum_probs=150.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+|++|+|..++||||+++++|.+.|..++..|++ ++....+.+.+..+.+.+|||+|+++|+.+...||++|.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 3679999999999999999999999999999998887 666667777777777889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+||+-+|..+|+....|.+.+... ...+|.++|-||+|+. ++......+.+.+++.....++.+|++...|+..+|.
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlv-eds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~ 174 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLV-EDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFA 174 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhh-HhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 999999999999999999999874 4589999999999998 6667788889999999999999999999999999999
Q ss_pred HHHHHhhcC
Q psy10504 261 EIVREMNFN 269 (286)
Q Consensus 261 ~i~~~i~~~ 269 (286)
.+++++.+.
T Consensus 175 YLaeK~~q~ 183 (246)
T KOG4252|consen 175 YLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHH
Confidence 999886543
No 134
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=4.3e-23 Score=202.12 Aligned_cols=202 Identities=20% Similarity=0.248 Sum_probs=137.7
Q ss_pred ecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEEC
Q psy10504 36 ISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVLG 111 (286)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~ivG 111 (286)
|++.++.+|.+..+++.++. +...++.+........ . .........+.+.|+++|
T Consensus 239 ii~~l~~~g~~~~~n~~l~~~~~~~i~~e~g~~~~~~~~~------------------~---~~~~~~~~~R~pvV~ImG 297 (787)
T PRK05306 239 VIKKLFKLGVMATINQSLDQETAELLAEEFGHEVKLVSLL------------------E---DDDEEDLVPRPPVVTIMG 297 (787)
T ss_pred HHHHHHHcCCeecCCCccCHHHHHHHHHHcCCEEEEcccc------------------c---cccccccccCCCEEEEEC
Confidence 57778888988888887773 3333444332222111 0 111223456889999999
Q ss_pred CCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc
Q psy10504 112 SGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT 190 (286)
Q Consensus 112 ~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s 190 (286)
++++|||||+++|..+.+...+.++++ +.....+.+++.. ++|||||||+.|..++.++++.+|++|+|+|++++..
T Consensus 298 hvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~--ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~ 375 (787)
T PRK05306 298 HVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGK--ITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVM 375 (787)
T ss_pred CCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEE--EEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCC
Confidence 999999999999998877665544433 2223455565544 8999999999999999999999999999999998654
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH---HHHHHHhcC--CCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD---GQALAQSWG--CPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 191 ~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~---~~~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
.+....| ... ...++|+||++||+|+..........+ ...+...++ ++++++||++|.|+++++++|...
T Consensus 376 ~qT~e~i----~~a-~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 376 PQTIEAI----NHA-KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HhHHHHH----HHH-HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 3333332 221 123799999999999963221100011 111233344 789999999999999999999864
No 135
>PLN00023 GTP-binding protein; Provisional
Probab=99.89 E-value=2.6e-22 Score=177.19 Aligned_cols=143 Identities=23% Similarity=0.349 Sum_probs=119.3
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEEC-------------CeEEEEEEEeCCCccc
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVD-------------KAPCVLEILDTAGTEQ 164 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~-------------~~~~~l~l~DtpG~~~ 164 (286)
-.+...+||+++|+.|||||||+++|.++.+...+.+|++. +....+.++ +..+.++||||+|+++
T Consensus 16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr 95 (334)
T PLN00023 16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER 95 (334)
T ss_pred CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence 34667899999999999999999999999998888888874 334445553 3567899999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-----------CCCCcEEEEEeCCCCCCCC--CC---C
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-----------SERVPILLVANKLDLASHQ--RE---V 228 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piivv~nK~Dl~~~~--~~---~ 228 (286)
|..++..++++++++|+|||+++..+++++..|+..+..... ..++|++||+||+|+.... +. +
T Consensus 96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~ 175 (334)
T PLN00023 96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN 175 (334)
T ss_pred hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence 999999999999999999999999999999999999987531 1258999999999996332 22 3
Q ss_pred CHHHHHHHHHhcC
Q psy10504 229 PTLDGQALAQSWG 241 (286)
Q Consensus 229 ~~~~~~~~~~~~~ 241 (286)
..++++.+++..+
T Consensus 176 ~~e~a~~~A~~~g 188 (334)
T PLN00023 176 LVDAARQWVEKQG 188 (334)
T ss_pred cHHHHHHHHHHcC
Confidence 5778889998887
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.89 E-value=7.8e-22 Score=157.27 Aligned_cols=157 Identities=29% Similarity=0.470 Sum_probs=122.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+||+++|++|+|||||++++....+...+.++++ +.....+..++..+.+.+||+||+.++..++..+.+.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 37999999999999999999999887666655554 44444567777667799999999999999999999999999999
Q ss_pred EECCCc-ccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 183 YSLTNH-HTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 183 ~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|.... .++.... .|...+...... +.|+++++||+|+.... ........+......+++++||++|.|++++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~ 157 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK--LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFK 157 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch--hhHHHHHHHhhccCCceEEeecCCCCCHHHHHH
Confidence 999877 6666655 566666554322 88999999999997322 333333444444557899999999999999999
Q ss_pred HHH
Q psy10504 261 EIV 263 (286)
Q Consensus 261 ~i~ 263 (286)
+|-
T Consensus 158 ~l~ 160 (161)
T TIGR00231 158 IVE 160 (161)
T ss_pred Hhh
Confidence 863
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.89 E-value=2.3e-22 Score=163.50 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=109.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.|+++|++|+|||||+++|..+.+...+.++++ +.....+..+ +....+.+|||||+..|..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999999877665443332 2222333333 12445899999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----h--cCCCEEEEeCCCCCcHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ----S--WGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~--~~~~~~~vSa~~~~gv~~ 257 (286)
|++++...+.... +..+.. .++|+++|+||+|+.+............+.. . ..++++++||++|.|+++
T Consensus 82 d~~~~~~~~~~~~-~~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T cd01887 82 AADDGVMPQTIEA-IKLAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD 156 (168)
T ss_pred ECCCCccHHHHHH-HHHHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence 9998653332222 222222 3789999999999863221100111111111 1 136899999999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
++++|.+...+
T Consensus 157 l~~~l~~~~~~ 167 (168)
T cd01887 157 LLEAILLLAEK 167 (168)
T ss_pred HHHHHHHhhhc
Confidence 99999887643
No 138
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=7.7e-23 Score=198.70 Aligned_cols=217 Identities=21% Similarity=0.225 Sum_probs=137.2
Q ss_pred EecccccCCcchhhHHHHHhh----hhhhhhhhhhhccccCcccccceeecceeeccCCCCCCCCCCCCCCcceEEEEEE
Q psy10504 35 SISKFPIPMGREMEIYAYYQG----LVTIEVCHLLYKISSHTASWSLFVILSVFLVPTDLLPRCSIDNSFTMREFKVVVL 110 (286)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kV~iv 110 (286)
.|++.|+.+|.+..+.++++. ++..++.+........... .+... .......+.....+.++|+++
T Consensus 181 ~ii~~l~~~g~~~~~n~~l~~~~~~~~~~~~g~~~~~~~~~~~~--------~~~~~--~~~~~~~~~~l~~r~p~V~Iv 250 (742)
T CHL00189 181 EIIKSLFLKGISVTVNQIIDISIISQVADDFGINIISEEKNNIN--------EKTSN--LDNTSAFTENSINRPPIVTIL 250 (742)
T ss_pred HHHHHHHHcCcCccCCCccCHHHHHHHHHHcCCeEEEeccchhh--------hhhhc--ccccccchhhhcccCCEEEEE
Confidence 367788889998888887773 3333333222111110000 00000 000000122345577899999
Q ss_pred CCCCCcHHHHHHHHhcCcCCCccCCCcc-c--eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC
Q psy10504 111 GSGGVGKSALTVQFVSGCFMEKYDPTIE-D--FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN 187 (286)
Q Consensus 111 G~~~~GKTSLi~~l~~~~~~~~~~~t~~-~--~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~ 187 (286)
|++++|||||+++|....+.....++++ + .....+..++....++|||||||+.|..++.++++.+|++++|+|+++
T Consensus 251 GhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~d 330 (742)
T CHL00189 251 GHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADD 330 (742)
T ss_pred CCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcC
Confidence 9999999999999998777655444333 1 122233333445669999999999999999999999999999999998
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH---HHHhcC--CCEEEEeCCCCCcHHHHHHHH
Q psy10504 188 HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA---LAQSWG--CPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 188 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~---~~~~~~--~~~~~vSa~~~~gv~~l~~~i 262 (286)
+...+....+.. +. ..++|+|+++||+|+..........+... +...++ ++++++||++|.|+++++++|
T Consensus 331 Gv~~QT~E~I~~-~k----~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I 405 (742)
T CHL00189 331 GVKPQTIEAINY-IQ----AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETI 405 (742)
T ss_pred CCChhhHHHHHH-HH----hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhh
Confidence 654444333221 11 23789999999999973211000001111 122333 789999999999999999999
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
....
T Consensus 406 ~~l~ 409 (742)
T CHL00189 406 LLLA 409 (742)
T ss_pred hhhh
Confidence 8764
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.89 E-value=3.7e-22 Score=161.46 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=102.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.|+++|++|||||||+++|.+. .+...+.++ +.+.....+.+.+ ...+++|||||+++|......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 5899999999999999999863 232222222 2233334444542 2358999999999988777778899999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHh---cCCCEEEEeCCCCCcHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQS---WGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~ 257 (286)
|+|+++....+. ...+..+.. . ...|+++|+||+|+.+... .....+.....+. .+.+++++||++++|+++
T Consensus 81 V~d~~~~~~~~~-~~~~~~~~~-~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (164)
T cd04171 81 VVAADEGIMPQT-REHLEILEL-L--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEE 156 (164)
T ss_pred EEECCCCccHhH-HHHHHHHHH-h--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHH
Confidence 999987422221 222222222 1 1249999999999973211 1111222233333 357899999999999999
Q ss_pred HHHHHHH
Q psy10504 258 MFAEIVR 264 (286)
Q Consensus 258 l~~~i~~ 264 (286)
+++.+.+
T Consensus 157 l~~~l~~ 163 (164)
T cd04171 157 LKEYLDE 163 (164)
T ss_pred HHHHHhh
Confidence 9998764
No 140
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=6.2e-22 Score=166.79 Aligned_cols=155 Identities=18% Similarity=0.199 Sum_probs=111.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccc---------hhhhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF---------ASMRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~---------~~~~~~~ 172 (286)
..++|+++|++|||||||++++.+..+. .....++.+.....+.+++. ..+.+|||||+.+. .... ..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 3479999999999999999999997642 22223333444444555554 14889999997321 1111 23
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
+..+|++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+.... .......+.+++++||+++
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~------~~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEEL------EERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHH------HHHhhcCCCceEEEEcCCC
Confidence 56899999999999998888877777766653 2347899999999999632211 1334445678999999999
Q ss_pred CcHHHHHHHHHHHh
Q psy10504 253 TNVNEMFAEIVREM 266 (286)
Q Consensus 253 ~gv~~l~~~i~~~i 266 (286)
.|+++++++|.+.+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998754
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.88 E-value=1.4e-21 Score=171.79 Aligned_cols=156 Identities=19% Similarity=0.073 Sum_probs=112.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-h-------hhhhcccC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-S-------MRDLYIKN 175 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~-------~~~~~~~~ 175 (286)
+|+++|++|||||||+|+|.+..+ ++..++|+.+........++.+ +.||||||..... . ....++++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~q--ii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQ--IIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcE--EEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 689999999999999999999765 3556667766555444445544 8899999975431 1 12456789
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCc
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTN 254 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~g 254 (286)
+|++++|+|+++..+.+ ..++..+.. .+.|+++|+||+|+.. ... .......+....+ .+++++||++|.|
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~-~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKF-KDK-LLPLIDKYAILEDFKDIVPISALTGDN 151 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCC-HHH-HHHHHHHHHhhcCCCceEEEecCCCCC
Confidence 99999999999876654 333444433 2789999999999862 211 1222333434344 3799999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q psy10504 255 VNEMFAEIVREMNFNPE 271 (286)
Q Consensus 255 v~~l~~~i~~~i~~~~~ 271 (286)
+++++++|.+.+++.+.
T Consensus 152 i~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 152 TSFLAAFIEVHLPEGPF 168 (270)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 99999999999987664
No 142
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.88 E-value=4.3e-22 Score=157.97 Aligned_cols=134 Identities=20% Similarity=0.336 Sum_probs=98.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc-----cchhhhhhcccCccEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-----QFASMRDLYIKNGQGFV 180 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-----~~~~~~~~~~~~~d~vi 180 (286)
||+++|++|+|||||++++.+..+. +.+|. ...+.. .+|||||+. .+..+.. .++++|+++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~------~~~~~~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vi 67 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQ------AVEYND-----GAIDTPGEYVENRRLYSALIV-TAADADVIA 67 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccce------eEEEcC-----eeecCchhhhhhHHHHHHHHH-HhhcCCEEE
Confidence 8999999999999999999987652 22232 122222 579999973 3444433 589999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF 259 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~ 259 (286)
+|+|++++.++... .|.... ..|+++|+||+|+.+ +....++...+.+..+. +++++||++|.|++++|
T Consensus 68 lv~d~~~~~s~~~~-~~~~~~-------~~p~ilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 68 LVQSATDPESRFPP-GFASIF-------VKPVIGLVTKIDLAE--ADVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEecCCCCCcCCCh-hHHHhc-------cCCeEEEEEeeccCC--cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 99999999887652 332211 249999999999863 23344555666666665 89999999999999999
Q ss_pred HHHH
Q psy10504 260 AEIV 263 (286)
Q Consensus 260 ~~i~ 263 (286)
+++.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9874
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=2.5e-21 Score=152.70 Aligned_cols=155 Identities=41% Similarity=0.694 Sum_probs=122.4
Q ss_pred EECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC
Q psy10504 109 VLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN 187 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~ 187 (286)
++|++|+|||||++++.+... .....++..+.........+....+.+||+||+..+...+..+++.+|++++|+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 589999999999999999877 4555555556666666666777789999999999888888889999999999999999
Q ss_pred cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 188 HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 188 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
+.+.+....|...........++|+++++||+|+.....................+++++|++++.|+++++++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 9988888887444444445568999999999998733222111113445555678999999999999999999985
No 144
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.88 E-value=2.1e-21 Score=156.18 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=109.6
Q ss_pred EECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhccc--CccEE
Q psy10504 109 VLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYIK--NGQGF 179 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~~--~~d~v 179 (286)
++|++|+|||||++++.+..+. ..+++++.+.....+.+++.. +.+|||||++.+.. ++..++. .+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKE--IEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeE--EEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 5899999999999999987543 344445555556667777654 89999999987664 3555664 89999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++... ..+...+.. .++|+++|+||+|+.+.. ... ...+.+....+.+++++||+++.|+++++
T Consensus 79 i~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~-~~~-~~~~~~~~~~~~~~~~iSa~~~~~~~~l~ 149 (158)
T cd01879 79 VNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKR-GIK-IDLDKLSELLGVPVVPTSARKGEGIDELK 149 (158)
T ss_pred EEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccc-cch-hhHHHHHHhhCCCeEEEEccCCCCHHHHH
Confidence 999999886432 233333333 278999999999997332 222 22456677778999999999999999999
Q ss_pred HHHHHHh
Q psy10504 260 AEIVREM 266 (286)
Q Consensus 260 ~~i~~~i 266 (286)
+++.+.+
T Consensus 150 ~~l~~~~ 156 (158)
T cd01879 150 DAIAELA 156 (158)
T ss_pred HHHHHHh
Confidence 9998864
No 145
>KOG0075|consensus
Probab=99.88 E-value=1.9e-22 Score=155.04 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=129.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+..+.++|..++|||||++....+.+..+-.||.+-. ...+..+.+.+.+||.|||.+|+++|.+|++.++++++|
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn---mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN---MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhcccccce---eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 45789999999999999999999998888888887632 333445555589999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--------CCEEEEeCCCCCc
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--------CPFIEASAKNKTN 254 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~~~g 254 (286)
+|+.|++..+..+.-+..+.......++|++|++||.|++++-.. ..+...+| +.++.+|+++..|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~------~~li~rmgL~sitdREvcC~siScke~~N 169 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK------IALIERMGLSSITDREVCCFSISCKEKVN 169 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH------HHHHHHhCccccccceEEEEEEEEcCCcc
Confidence 999999988888887777777666679999999999999743222 22333333 4689999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
++.+.+||.+..+.
T Consensus 170 id~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 170 IDITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999997654
No 146
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.87 E-value=2.2e-21 Score=162.27 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=99.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhc--CcCCCccC------------CCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS--GCFMEKYD------------PTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMR 169 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~ 169 (286)
-+|+++|++++|||||+++|+. +.+...+. .+.+ +.......+....+.+.+|||||+++|..++
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 3799999999999999999997 55544321 0111 1112222333444568999999999999999
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------hcCC
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-------SWGC 242 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~ 242 (286)
..+++.+|++++|+|+++.. ......++..+.. .++|+++|+||+|+..........+...+.. ..++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998853 2223333333322 3789999999999963222111223333321 2367
Q ss_pred CEEEEeCCCCCcHHH
Q psy10504 243 PFIEASAKNKTNVNE 257 (286)
Q Consensus 243 ~~~~vSa~~~~gv~~ 257 (286)
+++++||++|.|+++
T Consensus 158 ~iv~~Sa~~g~~~~~ 172 (194)
T cd01891 158 PVLYASAKNGWASLN 172 (194)
T ss_pred CEEEeehhccccccc
Confidence 899999999977633
No 147
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.5e-22 Score=181.42 Aligned_cols=162 Identities=21% Similarity=0.277 Sum_probs=125.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.+-|++|||.++|||||++++....+...+.+.+++++.. .+..+ +....++|+|||||+.|..|+.+..+-+|.+
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 366889999999999999999999999999999988877664 34443 1122389999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHhcC--CCEEEEeCCCCCc
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG---QALAQSWG--CPFIEASAKNKTN 254 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~vSa~~~~g 254 (286)
+||+|++|+- ..+..+.+.+.+. .++|++|++||+|+++.++.....+. ....+.++ +.++++||++|+|
T Consensus 83 ILVVa~dDGv----~pQTiEAI~hak~-a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G 157 (509)
T COG0532 83 ILVVAADDGV----MPQTIEAINHAKA-AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG 157 (509)
T ss_pred EEEEEccCCc----chhHHHHHHHHHH-CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence 9999999987 4455556665543 38999999999999844432111111 11233444 6789999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
+++|++.|+-....
T Consensus 158 i~eLL~~ill~aev 171 (509)
T COG0532 158 IDELLELILLLAEV 171 (509)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=5.2e-21 Score=162.63 Aligned_cols=167 Identities=37% Similarity=0.520 Sum_probs=129.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||+++|.++.+...+.+|++...... ....+..+.+.+|||+|+++|+.++..|+.+++++++
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 448999999999999999999999999999998876444443 3444447779999999999999999999999999999
Q ss_pred EEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-----------CCCHHHHHHHHHhc---CCCEEE
Q psy10504 182 VYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-----------EVPTLDGQALAQSW---GCPFIE 246 (286)
Q Consensus 182 v~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----------~~~~~~~~~~~~~~---~~~~~~ 246 (286)
|+|.++.. +.+....|...+..... .+.|+++++||+|+..... .............. ...+++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~-~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAP-DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCC-CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence 99999944 44555667777776432 4789999999999984431 22222222222222 344899
Q ss_pred EeCC--CCCcHHHHHHHHHHHhhcCC
Q psy10504 247 ASAK--NKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 247 vSa~--~~~gv~~l~~~i~~~i~~~~ 270 (286)
+|++ ++.++.++|..++..+.+..
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHHHHhh
Confidence 9999 99999999999999886543
No 149
>KOG1145|consensus
Probab=99.87 E-value=1.1e-21 Score=179.32 Aligned_cols=163 Identities=20% Similarity=0.214 Sum_probs=128.6
Q ss_pred CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEECCeEEEEEEEeCCCcccchhhhhhcccCc
Q psy10504 98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG 176 (286)
Q Consensus 98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~ 176 (286)
....++++-|.||||.++|||||+++|.+..+...+.+.+++++.. .+..+.+ -.++|.|||||..|.+|+.+....+
T Consensus 147 ~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vt 225 (683)
T KOG1145|consen 147 KLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVT 225 (683)
T ss_pred hhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccc
Confidence 3455688999999999999999999999999999888888876654 3444433 3389999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH---HHHHHhcC--CCEEEEeCCC
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG---QALAQSWG--CPFIEASAKN 251 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~---~~~~~~~~--~~~~~vSa~~ 251 (286)
|++++|++++|+. +.+..+.|.+.+. .++|+||++||+|.++.+.+-...+. ....+.+| ++++++||++
T Consensus 226 DIvVLVVAadDGV----mpQT~EaIkhAk~-A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~ 300 (683)
T KOG1145|consen 226 DIVVLVVAADDGV----MPQTLEAIKHAKS-ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALT 300 (683)
T ss_pred cEEEEEEEccCCc----cHhHHHHHHHHHh-cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeeccc
Confidence 9999999999987 5666677777654 48999999999998844432111111 11233444 7899999999
Q ss_pred CCcHHHHHHHHHHHh
Q psy10504 252 KTNVNEMFAEIVREM 266 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i 266 (286)
|+|++.|-+.++-.+
T Consensus 301 g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 301 GENLDLLEEAILLLA 315 (683)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999887654
No 150
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.87 E-value=5.8e-21 Score=153.03 Aligned_cols=145 Identities=24% Similarity=0.327 Sum_probs=110.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLYIK 174 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~~~ 174 (286)
++|+++|++|+|||||++++.+... ....++++.+.....+..++.. +.+|||||+.++... ....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIP--VRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEE--EEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999998754 3445555556555666666544 889999998765431 234667
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504 175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 254 (286)
.+|++++|+|++++.+..+...+.. ..+.|+++|+||+|+.+.... .....+.+++++||+++.|
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~~~Sa~~~~~ 144 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL--------LSLLAGKPIIAISAKTGEG 144 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc--------ccccCCCceEEEECCCCCC
Confidence 8999999999999877766554332 247899999999999733222 3344567899999999999
Q ss_pred HHHHHHHHHHHh
Q psy10504 255 VNEMFAEIVREM 266 (286)
Q Consensus 255 v~~l~~~i~~~i 266 (286)
+++++++|.+.+
T Consensus 145 v~~l~~~l~~~~ 156 (157)
T cd04164 145 LDELKEALLELA 156 (157)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 151
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=3.1e-21 Score=154.77 Aligned_cols=146 Identities=23% Similarity=0.284 Sum_probs=106.1
Q ss_pred EEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhcccCcc
Q psy10504 108 VVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLYIKNGQ 177 (286)
Q Consensus 108 ~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~~~~~d 177 (286)
+++|++|+|||||++++.+.. +....++++.+........++.. +.+|||||+..+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGRE--FILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeE--EEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 489999999999999999864 34455566655556666666654 88999999987554 3345678899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVN 256 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~ 256 (286)
++++|+|++++.+..+. .....+.. .+.|+++|+||+|+.+.... .......+. +++++||+++.|++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE------AAEFYSLGFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH------HHHHHhcCCCCeEEEecccCCCHH
Confidence 99999999886554443 22222322 26899999999999732211 222334554 78999999999999
Q ss_pred HHHHHHHHHh
Q psy10504 257 EMFAEIVREM 266 (286)
Q Consensus 257 ~l~~~i~~~i 266 (286)
++++++++.+
T Consensus 148 ~l~~~l~~~~ 157 (157)
T cd01894 148 DLLDAILELL 157 (157)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 152
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.87 E-value=1.1e-21 Score=157.04 Aligned_cols=147 Identities=21% Similarity=0.343 Sum_probs=108.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--cC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI--KN 175 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~--~~ 175 (286)
++|+++|.||+|||||+|+|.+... ..++++++.+.....+.+++.. +.++|+||...... ....++ ..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~--~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQ--VELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEE--EEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCce--EEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999654 5678888888888889998877 88999999543322 333443 67
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
.|++++|+|+++.+ .-......+... ++|+++|+||+|+..... .....+.+.+.+++|++++||++++|+
T Consensus 79 ~D~ii~VvDa~~l~---r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g--~~id~~~Ls~~Lg~pvi~~sa~~~~g~ 149 (156)
T PF02421_consen 79 PDLIIVVVDATNLE---RNLYLTLQLLEL----GIPVVVVLNKMDEAERKG--IEIDAEKLSERLGVPVIPVSARTGEGI 149 (156)
T ss_dssp SSEEEEEEEGGGHH---HHHHHHHHHHHT----TSSEEEEEETHHHHHHTT--EEE-HHHHHHHHTS-EEEEBTTTTBTH
T ss_pred CCEEEEECCCCCHH---HHHHHHHHHHHc----CCCEEEEEeCHHHHHHcC--CEECHHHHHHHhCCCEEEEEeCCCcCH
Confidence 99999999998743 222333344432 799999999999863222 223467888889999999999999999
Q ss_pred HHHHHHH
Q psy10504 256 NEMFAEI 262 (286)
Q Consensus 256 ~~l~~~i 262 (286)
+++++.|
T Consensus 150 ~~L~~~I 156 (156)
T PF02421_consen 150 DELKDAI 156 (156)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 153
>PRK04213 GTP-binding protein; Provisional
Probab=99.87 E-value=1.3e-21 Score=164.40 Aligned_cols=155 Identities=18% Similarity=0.191 Sum_probs=104.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC-----------cccchhhhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG-----------TEQFASMRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG-----------~~~~~~~~~~ 171 (286)
..++|+++|.+|+|||||++++.+..+...+.++++ .....+... .+.+||||| ++.++.++..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t-~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT-RKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee-eCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 568999999999999999999998776554444432 122233332 388999999 4566666655
Q ss_pred ccc----CccEEEEEEECCCcccHH----------HHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504 172 YIK----NGQGFVVVYSLTNHHTFQ----------DIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237 (286)
Q Consensus 172 ~~~----~~d~vilv~d~~~~~s~~----------~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 237 (286)
++. .++++++|+|.++..... .-..++..+. ..++|+++|+||+|+.+.. ......+.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~p~iiv~NK~Dl~~~~----~~~~~~~~ 154 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR----ELGIPPIVAVNKMDKIKNR----DEVLDEIA 154 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH----HcCCCeEEEEECccccCcH----HHHHHHHH
Confidence 553 457888888886532210 0011122222 2378999999999986322 23444555
Q ss_pred HhcCC---------CEEEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504 238 QSWGC---------PFIEASAKNKTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 238 ~~~~~---------~~~~vSa~~~~gv~~l~~~i~~~i~~~~~ 271 (286)
+..+. +++++||++| |+++++++|.+.+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 55554 5899999999 999999999998765443
No 154
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.87 E-value=1.8e-21 Score=159.38 Aligned_cols=154 Identities=20% Similarity=0.231 Sum_probs=110.2
Q ss_pred EECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEEC-CeEEEEEEEeCCCccc----chhhh---hhcccCccEE
Q psy10504 109 VLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQ----FASMR---DLYIKNGQGF 179 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~----~~~~~---~~~~~~~d~v 179 (286)
++|++|||||||++++.+... ...+++++.+.....+.++ +.. +.+|||||+.+ ...++ ..+++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGAR--IQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCe--EEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 589999999999999999764 3445555555545555565 555 88999999743 12222 3356789999
Q ss_pred EEEEECCCc------ccHHHHHHHHHHHHHHhC------CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504 180 VVVYSLTNH------HTFQDIKQMKELITRVKG------SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEA 247 (286)
Q Consensus 180 ilv~d~~~~------~s~~~~~~~~~~i~~~~~------~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v 247 (286)
++|+|++++ .++++...|...+..... ..++|+++|+||+|+.. ................+.+++++
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDD-AEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCc-hhHHHHHHHHHHhcCCCCCEEEE
Confidence 999999998 567777777777765332 14789999999999973 22222211223344456789999
Q ss_pred eCCCCCcHHHHHHHHHHH
Q psy10504 248 SAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~ 265 (286)
||+++.|++++++++++.
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999999764
No 155
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=5.2e-21 Score=184.10 Aligned_cols=165 Identities=19% Similarity=0.249 Sum_probs=121.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCc------c-ceE--EEEEEE---CCeEEEEEEEeCCCcccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTI------E-DFY--RKEIEV---DKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~------~-~~~--~~~~~~---~~~~~~l~l~DtpG~~~~ 165 (286)
-+++++|++++|||||+++|+... +...+..+. + +.. ...+.+ ++..+.++|||||||.+|
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 479999999999999999998742 111121111 1 111 122223 456678999999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC---
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC--- 242 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--- 242 (286)
...+..+++.+|++++|+|++++.+.++...|...+.. ++|+++|+||+|+.... .......+.+.++.
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~-----~ipiIiViNKiDl~~~~---~~~~~~el~~~lg~~~~ 155 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALEN-----DLEIIPVINKIDLPSAD---PERVKKEIEEVIGLDAS 155 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCCccC---HHHHHHHHHHHhCCCcc
Confidence 99999999999999999999998888877776654432 78999999999986321 12223445555564
Q ss_pred CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 243 PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
.++++||++|.|++++|++|.+.++......+.++
T Consensus 156 ~vi~vSAktG~GI~~Lle~I~~~lp~p~~~~~~pl 190 (595)
T TIGR01393 156 EAILASAKTGIGIEEILEAIVKRVPPPKGDPDAPL 190 (595)
T ss_pred eEEEeeccCCCCHHHHHHHHHHhCCCCCCCCCCCe
Confidence 48999999999999999999999877655444444
No 156
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=2.6e-21 Score=182.52 Aligned_cols=159 Identities=23% Similarity=0.259 Sum_probs=117.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----------cchhhh-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----------QFASMR- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----------~~~~~~- 169 (286)
..++|+++|++|||||||+++|++... ....++++.+.....+..++.. +.+|||||.. .|..++
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 468999999999999999999998754 5666777778877888888877 6789999953 333333
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHH-HHHHHhcCCCEEEE
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDG-QALAQSWGCPFIEA 247 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~-~~~~~~~~~~~~~v 247 (286)
..+++.+|++++|+|++++.+.++... +..+.. .++|+++|+||+|+.+.... ....+. ..+.....++++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 235789999999999999988887753 333332 37899999999999732211 001111 11222234789999
Q ss_pred eCCCCCcHHHHHHHHHHHhhc
Q psy10504 248 SAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~i~~ 268 (286)
||++|.|++++|+.+.+.+..
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.86 E-value=8.7e-21 Score=170.56 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=119.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhhhhhc---ccCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASMRDLY---IKNG 176 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~~~~~---~~~~ 176 (286)
..|+++|.+|||||||++++..... +..++.|+.......+.+++ ...+++||+||..+. ..+...+ +..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5789999999999999999998643 55666777666666666665 133899999997532 1233333 4569
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 177 QGFVVVYSLTNH---HTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
+++++|+|+++. ..++++..|...+..+. ...++|+++|+||+|+.+. .. .....+.+.+..+.+++++||+++
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~-~~-~~~~~~~l~~~~~~~vi~iSAktg 314 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE-EE-LAELLKELKKALGKPVFPISALTG 314 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh-HH-HHHHHHHHHHHcCCcEEEEEccCC
Confidence 999999999986 67788888877776643 2247899999999999732 22 233445556666789999999999
Q ss_pred CcHHHHHHHHHHHh
Q psy10504 253 TNVNEMFAEIVREM 266 (286)
Q Consensus 253 ~gv~~l~~~i~~~i 266 (286)
+|+++++++|.+.+
T Consensus 315 ~GI~eL~~~I~~~l 328 (329)
T TIGR02729 315 EGLDELLYALAELL 328 (329)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998765
No 158
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=7e-21 Score=177.32 Aligned_cols=151 Identities=23% Similarity=0.295 Sum_probs=120.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~ 172 (286)
..++|+++|++|+|||||+|+|++.. ++..+++|+.+.....+.+++.. +.+|||||+.++... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~--v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGIL--IKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEE--EEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 56899999999999999999999864 56778888888888888888877 789999998765432 2457
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+.+.. |+..+.. .++|+++|+||+|+... +...+.+..+.+++++||++
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-------~~~~~~~~~~~~~~~vSak~- 345 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-------SLEFFVSSKVLNSSNLSAKQ- 345 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-------chhhhhhhcCCceEEEEEec-
Confidence 8899999999999998877765 5544432 37899999999999622 12344566778899999998
Q ss_pred CcHHHHHHHHHHHhhcC
Q psy10504 253 TNVNEMFAEIVREMNFN 269 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~ 269 (286)
.|++++|+.+.+.+.+.
T Consensus 346 ~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 346 LKIKALVDLLTQKINAF 362 (442)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 69999999998887653
No 159
>PRK15494 era GTPase Era; Provisional
Probab=99.86 E-value=1.4e-20 Score=170.23 Aligned_cols=160 Identities=16% Similarity=0.204 Sum_probs=114.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhh-------hh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMR-------DL 171 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~-------~~ 171 (286)
.+..+|+++|++|||||||+|+|.+..+. .....|+.+.....+..++.+ +.||||||+.+ +..+. ..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~q--i~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQ--VILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeE--EEEEECCCcCCCcccHHHHHHHHHHH
Confidence 46689999999999999999999987763 234455556666667777766 78999999853 22221 23
Q ss_pred cccCccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEe
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEAS 248 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vS 248 (286)
.+.++|++++|+|+.+. +.... .|+..+.. .+.|.++|+||+|+.+ . ...+........+ ..++++|
T Consensus 128 ~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~----~~~p~IlViNKiDl~~-~---~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 128 SLHSADLVLLIIDSLKS--FDDITHNILDKLRS----LNIVPIFLLNKIDIES-K---YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEEhhcCcc-c---cHHHHHHHHHhcCCCcEEEEEe
Confidence 47899999999998663 33333 34444433 2567889999999862 2 1333444444333 6799999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCCc
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNPEKD 273 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~~~~ 273 (286)
|++|.|+++++++|.+.+++.+...
T Consensus 198 Aktg~gv~eL~~~L~~~l~~~~~~~ 222 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKISPWLY 222 (339)
T ss_pred ccCccCHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999998866443
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.86 E-value=7.8e-21 Score=157.20 Aligned_cols=155 Identities=21% Similarity=0.195 Sum_probs=109.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCc-----------------cceEEEEEEECCeEEEEEEEeCCCcccchhh
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-----------------EDFYRKEIEVDKAPCVLEILDTAGTEQFASM 168 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~-----------------~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~ 168 (286)
+|+++|.+|+|||||++++.+.........+. .+.....+...+ ..+.+|||||+.++...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPD--RRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCC--EEEEEEeCCCcHHHHHH
Confidence 48999999999999999999876654332211 122222333343 44899999999999988
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHh--------
Q psy10504 169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQS-------- 239 (286)
Q Consensus 169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~-------- 239 (286)
+..+++.+|++++|+|++++...... .++..+.. .+.|+++|+||+|+..... ...........+.
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 99999999999999999987654433 23333332 4789999999999973111 1111222222222
Q ss_pred ------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 240 ------WGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 240 ------~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
...+++++||++|.|++++++++.+.++
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 3478999999999999999999999875
No 161
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.86 E-value=6.2e-21 Score=178.48 Aligned_cols=148 Identities=26% Similarity=0.332 Sum_probs=118.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~ 172 (286)
..++|+++|.+|+|||||+|+|.+.. ++...++++.+.....+.+++.. +.+|||||++++... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIP--LRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeE--EEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 45899999999999999999999865 36677788888888888888766 889999998765432 2346
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+.++...|.. ..++|+++|+||+|+.+... .. ...+.+++++||++|
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~-~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEID-LE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccch-hh--------hccCCceEEEEeeCC
Confidence 789999999999999887775544332 34789999999999973211 11 344578999999999
Q ss_pred CcHHHHHHHHHHHhhc
Q psy10504 253 TNVNEMFAEIVREMNF 268 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~ 268 (286)
.|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998865
No 162
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.86 E-value=2.2e-20 Score=174.61 Aligned_cols=159 Identities=21% Similarity=0.218 Sum_probs=116.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh----------
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR---------- 169 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~---------- 169 (286)
...++|+++|++|+|||||+++|++.. .....++|+.+.....+..++.. +.+|||||+.++....
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~e~~~~~~ 247 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKK--YLLIDTAGIRRKGKVTEGVEKYSVLR 247 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcE--EEEEECCCccccccchhhHHHHHHHH
Confidence 356899999999999999999999864 35666777777777777777765 8899999976544321
Q ss_pred -hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cCCCE
Q psy10504 170 -DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WGCPF 244 (286)
Q Consensus 170 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~ 244 (286)
..+++.+|++++|+|++++.+.++...+ ..+.. .++|+++|+||+|+.+ ...........+... .++++
T Consensus 248 ~~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~----~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 248 TLKAIERADVVLLVLDATEGITEQDLRIA-GLILE----AGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCCCCce
Confidence 2467899999999999998877765432 22222 2789999999999972 111111111122222 24789
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+++||++|.|++++|+++.+....
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999886653
No 163
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=1.7e-20 Score=170.14 Aligned_cols=152 Identities=18% Similarity=0.210 Sum_probs=113.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI 173 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~ 173 (286)
.++|+++|.+|+|||||+|+|.+... ..+..+++.++....+.+++.. .+.+|||||.. .|...+ ..+
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~-~i~l~DT~G~~~~l~~~lie~f~~tl-e~~ 266 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGG-EVLLTDTVGFIRDLPHELVAAFRATL-EEV 266 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCc-eEEEEecCcccccCCHHHHHHHHHHH-HHH
Confidence 48999999999999999999999754 3455667777778888884322 48899999972 222222 247
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
.++|++++|+|++++.+.+....|...+... ...++|+++|+||+|+.+. .. ..... ....+++++||++|.
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~-~~-----v~~~~-~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDE-PR-----IERLE-EGYPEAVFVSAKTGE 338 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCCh-Hh-----HHHHH-hCCCCEEEEEccCCC
Confidence 8899999999999998888777666655553 2347899999999999621 11 11111 123568999999999
Q ss_pred cHHHHHHHHHHH
Q psy10504 254 NVNEMFAEIVRE 265 (286)
Q Consensus 254 gv~~l~~~i~~~ 265 (286)
|+++++++|.+.
T Consensus 339 GI~eL~~~I~~~ 350 (351)
T TIGR03156 339 GLDLLLEAIAER 350 (351)
T ss_pred CHHHHHHHHHhh
Confidence 999999999764
No 164
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.86 E-value=5.5e-21 Score=159.66 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=103.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC----cCCC----ccCCCccceEEEEEEEC------------CeEEEEEEEeCCCccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG----CFME----KYDPTIEDFYRKEIEVD------------KAPCVLEILDTAGTEQ 164 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~----~~~~----~~~~t~~~~~~~~~~~~------------~~~~~l~l~DtpG~~~ 164 (286)
++|+++|++|+|||||+++|+.. .+.. ...+++.+.....+.+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999872 1211 12222222222233332 3345689999999976
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHH-HHH----
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQA-LAQ---- 238 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~-~~~---- 238 (286)
+..........+|++++|+|++++...+....+.. ... .++|+++++||+|+..... .....+... +..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 54444445677899999999998655444333321 111 2679999999999862221 111111111 111
Q ss_pred --hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 239 --SWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 239 --~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
..+++++++||++|.|++++++++.+.++.
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 135789999999999999999999998764
No 165
>KOG0071|consensus
Probab=99.86 E-value=5.7e-21 Score=145.78 Aligned_cols=162 Identities=17% Similarity=0.286 Sum_probs=128.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
++++|+.+|..++||||++..|+.+..... .||+ .+...++.+.+.. |.+||.+|+++.+.+|++|+..+.++|||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~-ipTv-GFnvetVtykN~k--fNvwdvGGqd~iRplWrhYy~gtqglIFV 91 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTV-GFNVETVTYKNVK--FNVWDVGGQDKIRPLWRHYYTGTQGLIFV 91 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCccc-cccc-ceeEEEEEeeeeE--EeeeeccCchhhhHHHHhhccCCceEEEE
Confidence 578999999999999999999998755443 3344 3445566666666 89999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH--hcCCCEEEEeCCCCCcHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ--SWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+.+...+++.+.-+..+...+...+.|++|.+||.|++++.......+..++.. ....-+.+++|.+|+|+.+-|.
T Consensus 92 ~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~egls 171 (180)
T KOG0071|consen 92 VDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEGLS 171 (180)
T ss_pred EeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHHHH
Confidence 99999999999998888887767667899999999999985433222222222222 1225578999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
|+...+++
T Consensus 172 wlsnn~~~ 179 (180)
T KOG0071|consen 172 WLSNNLKE 179 (180)
T ss_pred HHHhhccC
Confidence 99987754
No 166
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.85 E-value=3.6e-20 Score=150.65 Aligned_cols=155 Identities=22% Similarity=0.278 Sum_probs=107.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------h-hh
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------M-RD 170 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~-~~ 170 (286)
.++|+++|++|+|||||++++.+... ....++++.+.....+..++.. +.+|||||+.+... . ..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKK--YTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCee--EEEEECCCCccccchhccHHHHHHHHHH
Confidence 47899999999999999999998653 3344455555555566666666 78999999754311 1 12
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----CCCEEE
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----GCPFIE 246 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~ 246 (286)
..+..+|++++|+|++++.+..... ++..+.. .+.|+++++||+|+.+............+.+.. ..++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 3567899999999999987765543 2222222 268999999999997332111111122333333 368999
Q ss_pred EeCCCCCcHHHHHHHHHHH
Q psy10504 247 ASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~ 265 (286)
+||+++.|++++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998763
No 167
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=2.3e-20 Score=176.12 Aligned_cols=155 Identities=20% Similarity=0.233 Sum_probs=113.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~ 172 (286)
..++|+|+|.+|||||||+|+|.+... ....++++.+.......+++.. +.+|||||++. +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRR--FTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcE--EEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 347999999999999999999998653 3445555556666777777776 88999999763 33345667
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+... ..+...+.. .++|+++|+||+|+.... ....+......+ ..+++||++|
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~----~~~~~~~~~g~~-~~~~iSA~~g 184 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE----ADAAALWSLGLG-EPHPVSALHG 184 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc----hhhHHHHhcCCC-CeEEEEcCCC
Confidence 899999999999999766543 233333333 378999999999986221 111122222233 3579999999
Q ss_pred CcHHHHHHHHHHHhhcC
Q psy10504 253 TNVNEMFAEIVREMNFN 269 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~ 269 (286)
.|++++|++|++.+++.
T Consensus 185 ~gi~eL~~~i~~~l~~~ 201 (472)
T PRK03003 185 RGVGDLLDAVLAALPEV 201 (472)
T ss_pred CCcHHHHHHHHhhcccc
Confidence 99999999999998663
No 168
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.85 E-value=2.7e-20 Score=155.06 Aligned_cols=160 Identities=18% Similarity=0.213 Sum_probs=108.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-------------------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-------------------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------------------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|+.++|||||+.+|........ ....+.+.....+........++++|||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 457899999999999999999986332110 0111123333444412333449999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHhc--
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-ALAQSW-- 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~~-- 240 (286)
+|.......++.+|++|+|+|+.++...+.... +..+.. .++|+++|+||+|+..........+.. .+.+..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~-l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEH-LKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHH-HHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred ceeecccceecccccceeeeecccccccccccc-cccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 999988889999999999999998765544333 333333 278999999999997111111111111 232333
Q ss_pred ----CCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 241 ----GCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 241 ----~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.++++++||++|.|+++|++.|.+.++
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 257999999999999999999999876
No 169
>KOG0076|consensus
Probab=99.85 E-value=2.7e-21 Score=152.79 Aligned_cols=164 Identities=26% Similarity=0.347 Sum_probs=127.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN 175 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~ 175 (286)
..+.|+|+|..++|||||+.++.... .+....+|.+ ....++.+.+.. +.|||.+||+..+++|..||..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvg-Lnig~i~v~~~~--l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVG-LNIGTIEVCNAP--LSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccc-eeecceeeccce--eEEEEcCChHHHHHHHHHHHHH
Confidence 45789999999999999998886521 1223344443 223445555555 8899999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC---CCEEEEeCCCC
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG---CPFIEASAKNK 252 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~vSa~~~ 252 (286)
+|++++++|+++++.++.....+..+......+++|+++.+||.|+.+.............++..+ .++.+|||.+|
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g 172 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG 172 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence 999999999999999999998888887777778999999999999973322211111112223333 78999999999
Q ss_pred CcHHHHHHHHHHHhhcC
Q psy10504 253 TNVNEMFAEIVREMNFN 269 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~ 269 (286)
+|+++..+|+...++.+
T Consensus 173 egv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 173 EGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccHHHHHHHHHHHHhhc
Confidence 99999999999999887
No 170
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.84 E-value=2.8e-20 Score=150.67 Aligned_cols=144 Identities=13% Similarity=0.130 Sum_probs=99.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch----hhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA----SMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~----~~~~~~~~~~d~vil 181 (286)
+|+++|++|+|||||++++.+..... . ....+.+... .+|||||..... ......++.+|++++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~------~~~~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~ 70 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--R------KTQAVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLIY 70 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--c------cceEEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEEE
Confidence 79999999999999999987643211 1 1112223222 269999973222 111234789999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~ 259 (286)
|+|++++.++.. .|+..+ ..++|+++++||+|+.+ ........+.+..+ .|++++||++|+|++++|
T Consensus 71 v~d~~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~----~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~ 139 (158)
T PRK15467 71 VHGANDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD----ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLV 139 (158)
T ss_pred EEeCCCcccccC--HHHHhc-----cCCCCeEEEEEccccCc----ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHH
Confidence 999998876532 233322 23679999999999862 22344556666666 499999999999999999
Q ss_pred HHHHHHhhcCCCC
Q psy10504 260 AEIVREMNFNPEK 272 (286)
Q Consensus 260 ~~i~~~i~~~~~~ 272 (286)
+.+.+.+.+....
T Consensus 140 ~~l~~~~~~~~~~ 152 (158)
T PRK15467 140 DYLASLTKQEEAG 152 (158)
T ss_pred HHHHHhchhhhcc
Confidence 9999988654433
No 171
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.84 E-value=1.1e-19 Score=167.56 Aligned_cols=159 Identities=19% Similarity=0.233 Sum_probs=119.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEEC-CeEEEEEEEeCCCccc----chhhhhhc---ccCc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQ----FASMRDLY---IKNG 176 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~----~~~~~~~~---~~~~ 176 (286)
.|+++|.||||||||++++++... ...++.|+.......+.++ +.. +.+||+||..+ ...+...+ +..+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~--~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRS--FVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCce--EEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 799999999999999999998653 3566777666655556555 444 88999999643 22233334 4569
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 177 QGFVVVYSLTNH---HTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
+++++|+|+++. ..+++...|...+..+.. ..++|++||+||+|+.. .....+.+.+..+.+++++||+++
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~-----~~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE-----AEENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC-----CHHHHHHHHHHhCCcEEEEeCCCC
Confidence 999999999865 567777778777776532 24789999999999852 123445566666788999999999
Q ss_pred CcHHHHHHHHHHHhhcCCC
Q psy10504 253 TNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~~ 271 (286)
+|+++++++|.+.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~~~ 331 (424)
T PRK12297 313 QGLDELLYAVAELLEETPE 331 (424)
T ss_pred CCHHHHHHHHHHHHHhCcc
Confidence 9999999999998866543
No 172
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.84 E-value=3.1e-20 Score=156.55 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=79.9
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPT 230 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~ 230 (286)
..+.||||||+++|...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.... ...
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~~~ 159 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALENY 159 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHHHH
Confidence 45899999999999888888888999999999999742111111222222221 13479999999999632111 111
Q ss_pred HHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 231 LDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 231 ~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
.......+. .+.+++++||++|+|+++++++|.+.+++.+
T Consensus 160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 222222332 2578999999999999999999999887754
No 173
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.84 E-value=3.7e-20 Score=177.21 Aligned_cols=159 Identities=20% Similarity=0.239 Sum_probs=107.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEE-EEEEC----------------CeEEEEEEEeCCCcccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRK-EIEVD----------------KAPCVLEILDTAGTEQF 165 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~----------------~~~~~l~l~DtpG~~~~ 165 (286)
+.+-|+++|+++||||||+++|.+..+....+++++..... .+..+ .....+.|||||||+.|
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 56789999999999999999999988766655543321111 11111 00113889999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CC--------HHHH-
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VP--------TLDG- 233 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~--------~~~~- 233 (286)
..++..+++.+|++++|+|++++...++...+ ..+.. .++|+++++||+|+.+.... .. ....
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~~l~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~ 157 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM----YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQ 157 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH-HHHHH----cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHH
Confidence 99999999999999999999985433332221 12222 27899999999999632110 00 0000
Q ss_pred -----------HHHHH------------hc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 234 -----------QALAQ------------SW--GCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 234 -----------~~~~~------------~~--~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
..+.+ .+ .++++++||++|+|+++++++|....
T Consensus 158 ~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 158 QNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 01111 12 26899999999999999999987543
No 174
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.84 E-value=1e-19 Score=175.28 Aligned_cols=166 Identities=17% Similarity=0.210 Sum_probs=118.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----c---------CCCccceEEEEEEE---CCeEEEEEEEeCCCccc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----Y---------DPTIEDFYRKEIEV---DKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~l~DtpG~~~ 164 (286)
.-+++++||.++|||||+.+|+.. .+... . .+.+.......+.+ ++..+.+++||||||.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 347999999999999999999862 22111 0 01111111122222 45567899999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP- 243 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~- 243 (286)
|...+..+++.+|++++|+|++++...++...|..... .++|+++|+||+|+..... ......+....+.+
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~-----~~lpiIvViNKiDl~~a~~---~~v~~ei~~~lg~~~ 158 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NDLEIIPVLNKIDLPAADP---ERVKQEIEDVIGIDA 158 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEEEECCCCCcccH---HHHHHHHHHHhCCCc
Confidence 99999999999999999999999877776666554432 2789999999999863221 22233444445543
Q ss_pred --EEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 244 --FIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 244 --~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
++++||++|.|+++++++|.+.++......+.++
T Consensus 159 ~~vi~iSAktG~GI~~Ll~~I~~~lp~P~~~~~~pl 194 (600)
T PRK05433 159 SDAVLVSAKTGIGIEEVLEAIVERIPPPKGDPDAPL 194 (600)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHhCccccCCCCCCc
Confidence 8999999999999999999999987654444443
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.83 E-value=1.8e-19 Score=145.31 Aligned_cols=155 Identities=23% Similarity=0.191 Sum_probs=104.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~~ 172 (286)
...+|+++|++|+|||||++++.+..+.. ....++........... ...+.+|||||...... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~ 79 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDD--DAQIIFVDTPGIHKPKKKLGERMVKAAWSA 79 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcC--CeEEEEEECCCCCcchHHHHHHHHHHHHHH
Confidence 46789999999999999999999865432 22233322223223333 34488999999764332 23445
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKN 251 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~ 251 (286)
+..+|++++|+|++++.+. ....+...+... +.|+++|+||+|+... ..........+.... ..+++++|+++
T Consensus 80 ~~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~----~~~~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 80 LKDVDLVLFVVDASEPIGE-GDEFILELLKKS----KTPVILVLNKIDLVKD-KEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHhCCEEEEEEECCCccCc-hHHHHHHHHHHh----CCCEEEEEEchhcccc-HHHHHHHHHHHHhccCCCceEEEEecc
Confidence 7889999999999987221 122233333332 6899999999999732 222233334444444 37899999999
Q ss_pred CCcHHHHHHHHHHH
Q psy10504 252 KTNVNEMFAEIVRE 265 (286)
Q Consensus 252 ~~gv~~l~~~i~~~ 265 (286)
+.|+++++++|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999775
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=1.7e-19 Score=168.64 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=115.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhcccC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLYIKN 175 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~~~~ 175 (286)
+|+++|++|||||||+|+|.+.. +....++++.+.......+++.. +.+|||||.. .+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~--~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGRE--FILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeE--EEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 58999999999999999999865 35566777777777788887776 8999999963 344456667899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCc
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN 254 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~g 254 (286)
+|++++|+|+.++.+..+. .+...+.+ .++|+++|+||+|+.+.... ... ....+. +++++||++|.|
T Consensus 79 ad~vl~vvD~~~~~~~~d~-~i~~~l~~----~~~piilVvNK~D~~~~~~~-----~~~-~~~lg~~~~~~vSa~~g~g 147 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDE-EIAKWLRK----SGKPVILVANKIDGKKEDAV-----AAE-FYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred CCEEEEEEeCCCCCCHHHH-HHHHHHHH----hCCCEEEEEECccCCccccc-----HHH-HHhcCCCCeEEEeCCcCCC
Confidence 9999999999986554432 22233333 27899999999998732221 112 234565 799999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q psy10504 255 VNEMFAEIVREMNFNP 270 (286)
Q Consensus 255 v~~l~~~i~~~i~~~~ 270 (286)
++++++++.+.+.+..
T Consensus 148 v~~ll~~i~~~l~~~~ 163 (429)
T TIGR03594 148 IGDLLDAILELLPEEE 163 (429)
T ss_pred hHHHHHHHHHhcCccc
Confidence 9999999999886643
No 177
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.83 E-value=2.6e-19 Score=149.53 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=106.3
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchhhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFASMR 169 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~~~ 169 (286)
++...++|+++|++|+|||||++++++..+...+.++.+......+...+ ..+.+|||||. +++..+.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~l~l~DtpG~~~~~~~~~~~~~~~~~~ 97 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVN--DKLRLVDLPGYGYAKVSKEEKEKWQKLI 97 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecC--CeEEEeCCCCCCCcCCCchHHHHHHHHH
Confidence 44567899999999999999999999976554444444322222221112 45899999994 3344444
Q ss_pred hhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHhcCCCEE
Q psy10504 170 DLYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQALAQSWGCPFI 245 (286)
Q Consensus 170 ~~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~ 245 (286)
..+++.+ +++++|+|++++.+..+. .+...+.. .++|+++++||+|+.+.... ...............+++
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE----YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI 172 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH----cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE
Confidence 5555544 678889998876544332 11222222 27899999999998632211 111122233333357899
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 246 EASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
++||+++.|++++++.|.+.+++
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988765
No 178
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=1.4e-19 Score=169.12 Aligned_cols=162 Identities=18% Similarity=0.168 Sum_probs=117.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhh---hhhcccCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASM---RDLYIKNG 176 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~---~~~~~~~~ 176 (286)
.+|+|+|.||||||||+++|..... ...++.|+.......+..++.. +++|||||.... ..+ ..+.+..+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~--f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTR--FTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeE--EEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 5799999999999999999998543 4567778777777777777765 899999996421 112 22346779
Q ss_pred cEEEEEEECCCc----ccHHHHHHHHHHHHHHh----------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy10504 177 QGFVVVYSLTNH----HTFQDIKQMKELITRVK----------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC 242 (286)
Q Consensus 177 d~vilv~d~~~~----~s~~~~~~~~~~i~~~~----------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 242 (286)
|++++|+|+++. ..++++..+...+..+. ...++|++||+||+|+++. .... ..........++
T Consensus 238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da-~el~-e~l~~~l~~~g~ 315 (500)
T PRK12296 238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA-RELA-EFVRPELEARGW 315 (500)
T ss_pred CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh-HHHH-HHHHHHHHHcCC
Confidence 999999999863 34555555555555443 1247899999999999732 2211 112222234578
Q ss_pred CEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 243 PFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+++++||++++|+++++++|.+.+...+
T Consensus 316 ~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 316 PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999886644
No 179
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.83 E-value=1.9e-19 Score=151.70 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=90.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCc-cEEEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNG-QGFVVVYS 184 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~-d~vilv~d 184 (286)
+|+++|+++||||||+++|..+.+...++++............+....+.+||+|||.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68999999999999999999988776665543322222222223445589999999999999999999998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCC
Q psy10504 185 LTNH-HTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS 223 (286)
Q Consensus 185 ~~~~-~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~ 223 (286)
+.+. .++..+..++..+.... ..+++|+++++||+|+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 9997 67777776665554322 235899999999999863
No 180
>KOG3883|consensus
Probab=99.83 E-value=6.1e-19 Score=136.66 Aligned_cols=174 Identities=30% Similarity=0.431 Sum_probs=151.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCe-EEEEEEEeCCCcccc-hhhhhhcccCccE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKA-PCVLEILDTAGTEQF-ASMRDLYIKNGQG 178 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~-~~~l~l~DtpG~~~~-~~~~~~~~~~~d~ 178 (286)
+..||+++|.-++|||+++.++..+..+ ..+.+|++|.+...+..+.+ .=.+.++||.|...+ ..+-.+|++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 4579999999999999999999886554 45678888888887776543 334889999998777 6788899999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++||+..|++||+.+..+...|.+.+....+|++|++||+|+. +.++++...+...++...+..++++|.+...+-+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~-~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRA-EPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcc-cchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 99999999999999998888888887777789999999999997 67778888889999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCcCCCc
Q psy10504 259 FAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 259 ~~~i~~~i~~~~~~~~~~~ 277 (286)
|..++..+.....+..++.
T Consensus 167 f~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 167 FTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred HHHHHHhccCCcccccCcc
Confidence 9999999988777766665
No 181
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.82 E-value=1.2e-19 Score=139.45 Aligned_cols=115 Identities=30% Similarity=0.537 Sum_probs=86.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
||+|+|+.|+|||||+++|++..+.. .+.++.+ ...............+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 79999999999999999999987761 1122222 33334555666666699999999999888888889999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCC
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLD 220 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~D 220 (286)
||++++.+++.+..++..+.... ..+++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999866544444332 244799999999998
No 182
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=5e-19 Score=164.09 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=113.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc--hhhh------hhcccC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF--ASMR------DLYIKN 175 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~--~~~~------~~~~~~ 175 (286)
++|+++|.+|+|||||+|+|.+..+ ..+..+++.+.....+.+.+.. .+.+|||||..+. ..++ ...++.
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~-~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG-ETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC-eEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 6899999999999999999998654 3455566667766677776541 2779999997432 2222 234688
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCc
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTN 254 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~g 254 (286)
+|++++|+|++++.+.+.+..|...+... ...++|+++|+||+|+.+. .. .. .. ....+.+ ++++||++|.|
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~-~~-~~--~~--~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDD-FE-PR--ID--RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCc-hh-HH--HH--HHhcCCCceEEEeCCCCCC
Confidence 99999999999998888776655555443 2347899999999999622 11 11 11 1123445 58899999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
+++++++|.+.+..
T Consensus 350 IdeL~e~I~~~l~~ 363 (426)
T PRK11058 350 IPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998854
No 183
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.82 E-value=3.2e-19 Score=171.64 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=112.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
+.|+++|+++||||||+++|.+. .+...+..+ +.+.....+..++ ..+.+||+|||++|...+..++.++|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 36899999999999999999963 233333333 2344444566666 45899999999999988888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC-CCHHHHHHHHHhc----CCCEEEEeCCCCCc
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE-VPTLDGQALAQSW----GCPFIEASAKNKTN 254 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~----~~~~~~vSa~~~~g 254 (286)
+|+|++++...+... .+..+.. .++| +++|+||+|+.+.... ....+...+.+.. +++++++||++|.|
T Consensus 79 LVVDa~~G~~~qT~e-hl~il~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 79 LVVDADEGVMTQTGE-HLAVLDL----LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEEECCCCCcHHHHH-HHHHHHH----cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 999999854322222 2222222 2677 9999999999732211 1122334444433 47899999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q psy10504 255 VNEMFAEIVREMNFNPE 271 (286)
Q Consensus 255 v~~l~~~i~~~i~~~~~ 271 (286)
++++++++...+...+.
T Consensus 154 I~eL~~~L~~l~~~~~~ 170 (581)
T TIGR00475 154 IGELKKELKNLLESLDI 170 (581)
T ss_pred chhHHHHHHHHHHhCCC
Confidence 99999999887765443
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=2.2e-19 Score=177.00 Aligned_cols=156 Identities=22% Similarity=0.244 Sum_probs=116.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc----------chhhh-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ----------FASMR- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~- 169 (286)
..++|+++|++|||||||++++.+... +..+++|+.+.....+.+++.. +.+|||||..+ |..++
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 458999999999999999999999763 5677888888888888888877 67899999642 22222
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH-HHHHh----cCCCE
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ-ALAQS----WGCPF 244 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~ 244 (286)
...++.+|++++|+|++++.+.++...+ ..+.. .++|+++|+||+|+.+... ....+ .+... ...++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~i~-~~~~~----~~~piIiV~NK~DL~~~~~---~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLKVM-SMAVD----AGRALVLVFNKWDLMDEFR---RQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEEchhcCChhH---HHHHHHHHHHhccCCCCCCE
Confidence 2346889999999999999888876543 33332 2789999999999973211 11111 12222 13578
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+++||++|.|++++++.+.+..+.
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999887764
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.82 E-value=5.5e-19 Score=157.08 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=110.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--------hhhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--------SMRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--------~~~~~~ 172 (286)
+.-.|+++|++|||||||+|++.+..+. ...+.|+..........++ .++.+|||||..... ......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~--~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD--AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC--ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 5567999999999999999999987653 3444455444444444343 448999999975432 223446
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKN 251 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~ 251 (286)
+.++|++++|+|++++.+. .....+..+. ..+.|+++|+||+|+.. .........+.+.+..+ .+++++||++
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~----~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~~~~~~~i~~iSA~~ 155 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK----KVKTPVILVLNKIDLVK-DKEELLPLLEELSELMDFAEIVPISALK 155 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh----hcCCCEEEEEECCcCCC-CHHHHHHHHHHHHhhCCCCeEEEecCCC
Confidence 7889999999999983321 1222222222 23689999999999972 22222233444444444 6799999999
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q psy10504 252 KTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~~ 271 (286)
+.|++++++++.+.+++.+.
T Consensus 156 ~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 156 GDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999987653
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.82 E-value=5.1e-19 Score=152.52 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=120.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MRDL 171 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~~~ 171 (286)
++.--|+++|.||+|||||+|++++.+. ++.-+.|++..+...+..++.+ +.|+||||..+-.. ....
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~Q--iIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQ--IIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCce--EEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 4556799999999999999999999765 6777888888888888888666 88999999543322 2334
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAK 250 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~ 250 (286)
.+.++|++++|+|++++....+ ...++.+.. .+.|+++++||+|...+.... ....+.+..... ..++++||+
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~----~~~pvil~iNKID~~~~~~~l-~~~~~~~~~~~~f~~ivpiSA~ 155 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK----TKTPVILVVNKIDKVKPKTVL-LKLIAFLKKLLPFKEIVPISAL 155 (298)
T ss_pred HhccCcEEEEEEeccccCCccH-HHHHHHHhh----cCCCeEEEEEccccCCcHHHH-HHHHHHHHhhCCcceEEEeecc
Confidence 5788999999999998543322 222333333 267999999999987332211 222222232222 579999999
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCcC
Q psy10504 251 NKTNVNEMFAEIVREMNFNPEKDN 274 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~~~~~~~ 274 (286)
+|.|++.+.+.+...+++.+....
T Consensus 156 ~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 156 KGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred ccCCHHHHHHHHHHhCCCCCCcCC
Confidence 999999999999999998775443
No 187
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.82 E-value=6.5e-19 Score=165.01 Aligned_cols=151 Identities=21% Similarity=0.258 Sum_probs=110.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLYIK 174 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~~~ 174 (286)
++|+++|++|||||||+++|.+.. .....++++.+.......+++.. +.+|||||++. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGRE--FILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcE--EEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 589999999999999999999875 35666677777777777887754 89999999886 2223455678
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCC
Q psy10504 175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKT 253 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~ 253 (286)
.+|++++|+|++++.+..+.. ....+.. .++|+++|+||+|+.+ . ......+ ...+. .++++||++|.
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~-~~~~l~~----~~~piilv~NK~D~~~--~---~~~~~~~-~~lg~~~~~~iSa~~g~ 148 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEE-IAKILRK----SNKPVILVVNKVDGPD--E---EADAYEF-YSLGLGEPYPISAEHGR 148 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCcc--c---hhhHHHH-HhcCCCCCEEEEeeCCC
Confidence 999999999999865443321 1122222 2789999999999752 1 1122222 34454 48999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++++++.+....
T Consensus 149 gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 149 GIGDLLDAILEELPE 163 (435)
T ss_pred CHHHHHHHHHhhCCc
Confidence 999999999985543
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.82 E-value=8.1e-19 Score=160.95 Aligned_cols=163 Identities=18% Similarity=0.189 Sum_probs=120.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hhhhhcccCcc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SMRDLYIKNGQ 177 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~~~~~~~~~d 177 (286)
.|+|+|.||||||||+|+|.+... ++.++.|+.......+..++.. .+.|+||||..+-. ......+..+|
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~-~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDER-SFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCc-EEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 699999999999999999998543 5677888887777777776432 28899999965321 11223578899
Q ss_pred EEEEEEECC---CcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504 178 GFVVVYSLT---NHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN 251 (286)
Q Consensus 178 ~vilv~d~~---~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~ 251 (286)
++++|+|++ +...+++...|...+..+. ...++|+++|+||+|+.. .... ......+.+..+ .+++++||++
T Consensus 240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~-~~el-~~~l~~l~~~~~~~~~Vi~ISA~t 317 (390)
T PRK12298 240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD-EEEA-EERAKAIVEALGWEGPVYLISAAS 317 (390)
T ss_pred EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC-hHHH-HHHHHHHHHHhCCCCCEEEEECCC
Confidence 999999998 4556777777777776642 223689999999999862 2221 223344444444 4789999999
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q psy10504 252 KTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~~ 271 (286)
+.|+++++++|.+.+++.+.
T Consensus 318 g~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcc
Confidence 99999999999999977543
No 189
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=2.4e-19 Score=148.02 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=96.4
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE-EEEEECCeEEEEEEEeCCCcc----------cchh
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVDKAPCVLEILDTAGTE----------QFAS 167 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~DtpG~~----------~~~~ 167 (286)
.+..+.++|+++|++|+|||||++++++..+.....++.+.... ..+..++ .+.+|||||.. .+..
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~ 89 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK 89 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence 34457789999999999999999999987644333333322222 1222232 38899999953 2333
Q ss_pred hhhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC--
Q psy10504 168 MRDLYIK---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG-- 241 (286)
Q Consensus 168 ~~~~~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-- 241 (286)
+...+++ .++++++|+|++++.+..+.. ++..+.. .++|+++++||+|+.+.. ......+.+......+
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 4445554 358999999998866555543 2333332 278999999999986321 1112223333333433
Q ss_pred CCEEEEeCCCCCcHH
Q psy10504 242 CPFIEASAKNKTNVN 256 (286)
Q Consensus 242 ~~~~~vSa~~~~gv~ 256 (286)
.+++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 589999999999974
No 190
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=5e-19 Score=165.78 Aligned_cols=156 Identities=22% Similarity=0.259 Sum_probs=112.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hh-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MR- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~- 169 (286)
..++|+++|++|+|||||++++++.. .....++++.+.....+..++.. +.+|||||+.+... .+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQK--YTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCee--EEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 57999999999999999999999754 35566677777776777777766 78899999653222 11
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cCCCEE
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WGCPFI 245 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~ 245 (286)
..+++.+|++++|+|++++.+.++..-+ ..+.. .++|+++|+||+|+.+. .. .......+... ..++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~----~~~~~ivv~NK~Dl~~~-~~-~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIA-GLALE----AGRALVIVVNKWDLVDE-KT-MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCcEEEEEECccCCCH-HH-HHHHHHHHHHhcccccCCCEE
Confidence 2367889999999999998777665432 22222 27899999999998721 11 11111122222 247999
Q ss_pred EEeCCCCCcHHHHHHHHHHHhh
Q psy10504 246 EASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
++||++|.|++++++.+.+...
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999887554
No 191
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=1.3e-18 Score=167.18 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=117.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--CcCCCccC------------CCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--GCFMEKYD------------PTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS 167 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~------------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~ 167 (286)
+.-+|+++|+.++|||||+++|+. +.+..... .+.+ +.......+....+.+.+||||||.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 346899999999999999999997 44433211 1111 22223333444456699999999999999
Q ss_pred hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-------hc
Q psy10504 168 MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-------SW 240 (286)
Q Consensus 168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-------~~ 240 (286)
.+..+++.+|++++|+|++++...+.... +..+.. .++|.++++||+|+..........+...+.. ..
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt~~~-l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQTRFV-TKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHHHHH-HHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 99999999999999999998654443333 333332 2789999999999874333222233333321 23
Q ss_pred CCCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCC
Q psy10504 241 GCPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNAS 276 (286)
Q Consensus 241 ~~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~ 276 (286)
.+|++.+||++|. |+..+++.|++.++......+.+
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~~~~~~P 204 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGP 204 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCCCCCCCC
Confidence 4789999999998 69999999999998665433444
No 192
>KOG1673|consensus
Probab=99.81 E-value=3.8e-19 Score=138.09 Aligned_cols=169 Identities=22% Similarity=0.400 Sum_probs=142.3
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
...-.+||.++|++..|||||+-.+.++.+...+..+.+ .+..+++.+.+..+.+.+||.+|++++..+.+....++-+
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva 95 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA 95 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence 344679999999999999999999999988777776666 6777889999999999999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC----CCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA----SHQREVPTLDGQALAQSWGCPFIEASAKNKTN 254 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~----~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~g 254 (286)
++++||.+.+.++..+..|+....... ...+| |+|+||.|.. .+.++.-..+...+++.++.+.++||+.+..|
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999877653 23566 6789999963 11222223356777888899999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q psy10504 255 VNEMFAEIVREMNFNP 270 (286)
Q Consensus 255 v~~l~~~i~~~i~~~~ 270 (286)
+.++|+.++.++-..+
T Consensus 174 v~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNLP 189 (205)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 9999999998876544
No 193
>KOG0462|consensus
Probab=99.80 E-value=5e-19 Score=162.09 Aligned_cols=172 Identities=19% Similarity=0.148 Sum_probs=136.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc--CCC--------------ccCCCccceE-EEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC--FME--------------KYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~--------------~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.+--++.|+-|.++|||||.++|+... ... .+.+-+.-.. ...+..++..+.+.++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 345579999999999999999998621 111 1111111111 12222337778899999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF 244 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 244 (286)
|..-..+.+..|+++++|+|+..+...+.+..++.++.. +..+|.|+||+|++.++.+....+...+......++
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~-----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~ 212 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA-----GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEV 212 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc-----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccce
Confidence 999999999999999999999999988888888777776 889999999999996666555556666666666789
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
+.+||++|.|+.+++++|++.++..+...+.+++
T Consensus 213 i~vSAK~G~~v~~lL~AII~rVPpP~~~~d~plr 246 (650)
T KOG0462|consen 213 IYVSAKTGLNVEELLEAIIRRVPPPKGIRDAPLR 246 (650)
T ss_pred EEEEeccCccHHHHHHHHHhhCCCCCCCCCcchH
Confidence 9999999999999999999999999988888876
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.1e-18 Score=158.29 Aligned_cols=150 Identities=18% Similarity=0.199 Sum_probs=115.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--h-------hhhhcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--S-------MRDLYI 173 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~-------~~~~~~ 173 (286)
+.|+++|.||||||||+|+|.+. ..+++.+++++|.......+.+.. |.++||+|.+... . .....+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999996 458999999999999999999998 8999999976433 1 233456
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNK 252 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~ 252 (286)
..||+++||+|...+-+-++-.- ...+.. .++|+++|+||+|.. ..+........+| -..+.+||.+|
T Consensus 82 ~eADvilfvVD~~~Git~~D~~i-a~~Lr~----~~kpviLvvNK~D~~------~~e~~~~efyslG~g~~~~ISA~Hg 150 (444)
T COG1160 82 EEADVILFVVDGREGITPADEEI-AKILRR----SKKPVILVVNKIDNL------KAEELAYEFYSLGFGEPVPISAEHG 150 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHHHHH-HHHHHh----cCCCEEEEEEcccCc------hhhhhHHHHHhcCCCCceEeehhhc
Confidence 88999999999988655444221 122222 368999999999975 1112222233344 56899999999
Q ss_pred CcHHHHHHHHHHHhh
Q psy10504 253 TNVNEMFAEIVREMN 267 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~ 267 (286)
.|+.+|.+++++.++
T Consensus 151 ~Gi~dLld~v~~~l~ 165 (444)
T COG1160 151 RGIGDLLDAVLELLP 165 (444)
T ss_pred cCHHHHHHHHHhhcC
Confidence 999999999999984
No 195
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.6e-18 Score=157.27 Aligned_cols=159 Identities=23% Similarity=0.270 Sum_probs=119.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh----------h-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM----------R- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~----------~- 169 (286)
..+||+++|.||+|||||+|++++. ..+...++|+.+.+...+..++.. +.++||+|..+-... +
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 5799999999999999999999985 457889999999999999999998 888999995532222 1
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----CCCEE
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----GCPFI 245 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~ 245 (286)
...+..+|++++|+|++.+.+-++.+-.- .+. ..+.++++|+||+|+.+........-...+...+ ..+++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~-~i~----~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAG-LIE----EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHH-HHH----HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence 23457799999999999987666654322 222 2388999999999997432222122222222222 27899
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 246 EASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
++||++|.|+.++|+++.+....
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred EEEecCCCChHHHHHHHHHHHHH
Confidence 99999999999999998875443
No 196
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.80 E-value=1.7e-18 Score=166.45 Aligned_cols=165 Identities=16% Similarity=0.198 Sum_probs=113.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc--CcCCCcc---------------CCCccceEEEEEEECCeEEEEEEEeCCCcccchhh
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS--GCFMEKY---------------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM 168 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~--~~~~~~~---------------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~ 168 (286)
+|+|+||.++|||||+++|+. +.+.... .+.+.......+.+.+ +.+.+||||||.+|...
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~--~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG--TKINIVDTPGHADFGGE 80 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC--EEEEEEECCCHHHHHHH
Confidence 699999999999999999986 3332211 1111111223344444 55899999999999999
Q ss_pred hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-------HhcC
Q psy10504 169 RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-------QSWG 241 (286)
Q Consensus 169 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-------~~~~ 241 (286)
+..+++.+|++++|+|++++.. .....|+..+.. .++|+++|+||+|+..........+...+. +...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~-~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~ 155 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPM-PQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLD 155 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCc-HHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhcccccccc
Confidence 9999999999999999988543 333445554444 278999999999986322111112222222 2234
Q ss_pred CCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 242 CPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 242 ~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
++++++||++|. |++.+|+.|++.++......+.++
T Consensus 156 ~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~~~~~~pl 201 (594)
T TIGR01394 156 FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPKGDLDEPL 201 (594)
T ss_pred CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCCCCCCCCE
Confidence 789999999995 899999999999986654334443
No 197
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=157.19 Aligned_cols=154 Identities=22% Similarity=0.313 Sum_probs=121.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDL 171 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~ 171 (286)
...+|++++|.||+|||||+|+|.+. ..+.+.++|++|.....+.++|.. +.++||+|.++-... ...
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~p--v~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIP--VRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEE--EEEEecCCcccCccHHHHHHHHHHHH
Confidence 36799999999999999999999984 568999999999999999999999 888999998765543 233
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
.++.||.+++|+|++.+.+-++..... ....++|+++|.||.|+...... .......+.+++.+||++
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~------~~~~~~~~i~v~NK~DL~~~~~~------~~~~~~~~~~~i~iSa~t 360 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE------LLPKKKPIIVVLNKADLVSKIEL------ESEKLANGDAIISISAKT 360 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH------hcccCCCEEEEEechhccccccc------chhhccCCCceEEEEecC
Confidence 568899999999999974333332211 22347899999999999833221 111223345799999999
Q ss_pred CCcHHHHHHHHHHHhhcC
Q psy10504 252 KTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~ 269 (286)
|+|++.+.+.|.+.+...
T Consensus 361 ~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 361 GEGLDALREAIKQLFGKG 378 (454)
T ss_pred ccCHHHHHHHHHHHHhhc
Confidence 999999999999988766
No 198
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.79 E-value=4.4e-18 Score=167.83 Aligned_cols=155 Identities=20% Similarity=0.228 Sum_probs=110.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~~ 172 (286)
...+|+++|++|||||||+|+|++... ....++++.+........++.. +.+|||||.+. +......+
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTD--FKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEE--EEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 457899999999999999999998653 4555666666666666666665 88999999763 23344567
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++....+ ..|...+.. .++|+++|+||+|+.... ....+......+ ..+++||++|
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~----~~~~~~~~lg~~-~~~~iSA~~g 421 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE----YDAAEFWKLGLG-EPYPISAMHG 421 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch----hhHHHHHHcCCC-CeEEEECCCC
Confidence 899999999999987533222 133334433 378999999999986211 111121222222 4578999999
Q ss_pred CcHHHHHHHHHHHhhcC
Q psy10504 253 TNVNEMFAEIVREMNFN 269 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~ 269 (286)
.|+++++++|++.++..
T Consensus 422 ~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 422 RGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCchHHHHHHHHhcccc
Confidence 99999999999998663
No 199
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.79 E-value=1.2e-18 Score=162.76 Aligned_cols=153 Identities=22% Similarity=0.210 Sum_probs=100.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|++++|||||+.+|+. +.+.. ...+.+.+.....+..++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 3568999999999999999999986 22211 011222233333444444
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-- 227 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-- 227 (286)
+.+.+||||||++|......++..+|++++|+|++++.+.. ..++...+.........|+++|+||+|+.+..+.
T Consensus 85 --~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~ 161 (426)
T TIGR00483 85 --YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEF 161 (426)
T ss_pred --eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHH
Confidence 45899999999998877777789999999999999985321 1222221111111223579999999999632221
Q ss_pred -CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504 228 -VPTLDGQALAQSWG-----CPFIEASAKNKTNVNE 257 (286)
Q Consensus 228 -~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~ 257 (286)
....+...+.+..+ ++++++||++|.|+++
T Consensus 162 ~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 162 EAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 11234445555554 5799999999999986
No 200
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.79 E-value=1.6e-18 Score=161.85 Aligned_cols=151 Identities=21% Similarity=0.218 Sum_probs=98.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECCe
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDKA 150 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~ 150 (286)
..++|+++|++++|||||+++|+.. .... ...+++.+.....+..++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~- 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK- 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC-
Confidence 5689999999999999999999842 1111 123344444444454444
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQRE-- 227 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-- 227 (286)
+.+.|||||||++|.......+..+|++++|+|++++...... ...+..+.. . ...|+++++||+|+.+....
T Consensus 84 -~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~--~~~~iivviNK~Dl~~~~~~~~ 159 (425)
T PRK12317 84 -YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLART-L--GINQLIVAINKMDAVNYDEKRY 159 (425)
T ss_pred -eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-c--CCCeEEEEEEccccccccHHHH
Confidence 4589999999998877666677899999999999983222111 112222222 1 12469999999999731111
Q ss_pred -CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504 228 -VPTLDGQALAQSWG-----CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 228 -~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l 258 (286)
....+...+.+..+ ++++++||++|+|++++
T Consensus 160 ~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 160 EEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence 11223344444444 57999999999999873
No 201
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.79 E-value=4.9e-18 Score=167.38 Aligned_cols=154 Identities=17% Similarity=0.294 Sum_probs=114.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh----------hhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM----------RDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~----------~~~ 171 (286)
+.++|+++|++|+|||||+|++.+... ..++++++.+.....+..++.. +.+|||||+..+... ...
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~--i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceE--EEEEECCCccccccccccccHHHHHHHH
Confidence 457999999999999999999998543 4455666555555556555555 889999998876432 122
Q ss_pred cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 172 YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 172 ~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
++ ..+|++++|+|+++.+.. ..+...+.+ .++|+++++||+|+.+ .+.. ..+.+.+.+..+++++++||
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~-~~~i-~id~~~L~~~LG~pVvpiSA 150 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAE-KQNI-RIDIDALSARLGCPVIPLVS 150 (772)
T ss_pred HHhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhh-ccCc-HHHHHHHHHHhCCCEEEEEe
Confidence 32 479999999999885432 223333333 2789999999999862 2222 34567788889999999999
Q ss_pred CCCCcHHHHHHHHHHHhh
Q psy10504 250 KNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~ 267 (286)
++|+|++++.+.+.+...
T Consensus 151 ~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQA 168 (772)
T ss_pred ecCCCHHHHHHHHHHhhh
Confidence 999999999999988654
No 202
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.79 E-value=7.6e-18 Score=135.10 Aligned_cols=158 Identities=21% Similarity=0.321 Sum_probs=116.5
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCC--------ccCC---CccceEEEEEEECC-eEEEEEEEeCCCcccch
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFME--------KYDP---TIEDFYRKEIEVDK-APCVLEILDTAGTEQFA 166 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--------~~~~---t~~~~~~~~~~~~~-~~~~l~l~DtpG~~~~~ 166 (286)
.......||++.|+.++||||+++++.....+. .+.. |+.........+++ .. +.++|||||++|.
T Consensus 5 ~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~--v~LfgtPGq~RF~ 82 (187)
T COG2229 5 ANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTG--VHLFGTPGQERFK 82 (187)
T ss_pred cccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcce--EEEecCCCcHHHH
Confidence 345678999999999999999999999865321 1111 22222222333444 34 8899999999999
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-Hh-cCCCE
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-QS-WGCPF 244 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~-~~~~~ 244 (286)
.+|..+.+++.++|+++|.+++..+ +....+..+... . .+|++|++||.|+.+.. +.++...+. .. ...++
T Consensus 83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~--~ip~vVa~NK~DL~~a~---ppe~i~e~l~~~~~~~~v 155 (187)
T COG2229 83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-N--PIPVVVAINKQDLFDAL---PPEKIREALKLELLSVPV 155 (187)
T ss_pred HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-c--CCCEEEEeeccccCCCC---CHHHHHHHHHhccCCCce
Confidence 9999999999999999999999888 444444444442 1 28999999999998332 333443333 33 37999
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy10504 245 IEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~ 265 (286)
++.+|.+++++.+.++.+..+
T Consensus 156 i~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 156 IEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeecccchhHHHHHHHHHhh
Confidence 999999999999999988876
No 203
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.79 E-value=2.7e-18 Score=165.01 Aligned_cols=160 Identities=20% Similarity=0.259 Sum_probs=104.9
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEE-EEC------CeE-----E-----EEEEEeCCCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI-EVD------KAP-----C-----VLEILDTAGTE 163 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~-~~~------~~~-----~-----~l~l~DtpG~~ 163 (286)
..|.+.|+++|++|+|||||+++|.+..+....++.++....... ..+ +.. . .++|||||||+
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 346788999999999999999999887665555544332221111 100 111 1 16899999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CC-----------H-
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VP-----------T- 230 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~-----------~- 230 (286)
.|..++..++..+|++++|+|++++...+....+ ..+.. .++|+++++||+|+.+.... .. .
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~~~~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAI-NILKR----RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-HHHHH----cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 9999999999999999999999984322222221 12222 37899999999998521110 00 0
Q ss_pred --HH-------H-HHHHH------------hc--CCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 231 --LD-------G-QALAQ------------SW--GCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 231 --~~-------~-~~~~~------------~~--~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
.. . ..+.+ .+ .++++++||++|+|++++++.+...
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 00 0 01110 11 2679999999999999999988653
No 204
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.79 E-value=2.3e-18 Score=165.88 Aligned_cols=145 Identities=18% Similarity=0.283 Sum_probs=108.7
Q ss_pred CCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh------hhhcc--cCccEEEE
Q psy10504 111 GSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM------RDLYI--KNGQGFVV 181 (286)
Q Consensus 111 G~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~------~~~~~--~~~d~vil 181 (286)
|.+|+|||||+|++.+... ..++++++.+.....+..++.. +++|||||+.++... ...++ ..+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~--i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGED--IEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeE--EEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998765 4455666656666677777766 789999999877653 33343 47899999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|+++.+. ...+...+.+ .++|+++|+||+|+.+ .+... .+.+.+.+..+++++++||++|+|+++++++
T Consensus 79 VvDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~-~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~ 149 (591)
T TIGR00437 79 VVDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAE-KKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDA 149 (591)
T ss_pred EecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHH-hCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHH
Confidence 999987532 1122222222 3789999999999862 22222 3467788889999999999999999999999
Q ss_pred HHHHh
Q psy10504 262 IVREM 266 (286)
Q Consensus 262 i~~~i 266 (286)
+.+..
T Consensus 150 i~~~~ 154 (591)
T TIGR00437 150 IRKAI 154 (591)
T ss_pred HHHHh
Confidence 98764
No 205
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.79 E-value=1.7e-18 Score=160.50 Aligned_cols=174 Identities=15% Similarity=0.104 Sum_probs=109.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCc----cCCCccceE------------------EEEEEECC------eEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEK----YDPTIEDFY------------------RKEIEVDK------APCV 153 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~----~~~t~~~~~------------------~~~~~~~~------~~~~ 153 (286)
...++|+++|++++|||||+++|.+...... ..+.+.+.. ......++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 3568999999999999999999975322110 000000000 00000011 1345
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLD 232 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~ 232 (286)
+++||||||++|...+...+..+|++++|+|++++.........+..+.. . ...|+++++||+|+.+.... ....+
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-I--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-c--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 89999999999998888888899999999999975411122222222222 1 13478999999999732111 11122
Q ss_pred HHHHHHhc---CCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 233 GQALAQSW---GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 233 ~~~~~~~~---~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
...+.... +++++++||++|+|+++++++|...++......+.+++
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~~~~~~~~~~ 207 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTPERDLDKPPL 207 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCCCCCCCCCcE
Confidence 22232222 57899999999999999999999987654444444544
No 206
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.78 E-value=3.8e-18 Score=135.98 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=103.6
Q ss_pred EECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hhhcccCccEE
Q psy10504 109 VLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RDLYIKNGQGF 179 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~~~~~~~d~v 179 (286)
++|++|+|||||++++.+.... ....+++............ ...+.+|||||+..+... ...+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999986443 2333333344444444432 234899999998765543 33477899999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH--HHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL--DGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~--~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++|+|++++....... +..... ..+.|+++|+||+|+.......... .........+.+++++||+++.|+.+
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 9999999987666654 222222 2388999999999987322211111 11222333458899999999999999
Q ss_pred HHHHHHHH
Q psy10504 258 MFAEIVRE 265 (286)
Q Consensus 258 l~~~i~~~ 265 (286)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99999875
No 207
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.78 E-value=2.7e-18 Score=145.31 Aligned_cols=147 Identities=21% Similarity=0.182 Sum_probs=95.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECCeEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDKAPCV 153 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~~~~~ 153 (286)
+|+++|++|+|||||+++|+.. .... ...+++.+.....+..++..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~-- 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRK-- 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCce--
Confidence 5899999999999999999752 1110 01222233333444455555
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC---CCH
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE---VPT 230 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~---~~~ 230 (286)
+.+|||||+++|.......++.+|++++|+|++++..-+... ....+.. . ...++|+|+||+|+....+. ...
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~-~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRR-HSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHH-HHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHH
Confidence 889999999988766677789999999999998864333222 2222222 1 12357889999998632211 011
Q ss_pred HHHHHHHHhcC---CCEEEEeCCCCCcHHHH
Q psy10504 231 LDGQALAQSWG---CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 231 ~~~~~~~~~~~---~~~~~vSa~~~~gv~~l 258 (286)
.+...+.+.++ .+++++||++|.|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 23344445555 45899999999999753
No 208
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.77 E-value=8.7e-18 Score=162.28 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=108.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC---cCCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG---CFMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~---~~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
-|+++|++++|||||+++|.+. .+.... .+.+.+.....+...+.. .+.|||||||++|.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~-~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGR-VLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCc-EEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 4889999999999999999863 222222 222223222333332222 38899999999998888888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC-CCHHHHHHHHHhcC---CCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE-VPTLDGQALAQSWG---CPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~---~~~~~vSa~~~~gv~ 256 (286)
|+|++++..-+.... +..+.. .++| ++||+||+|+.+.... ....+...+....+ .+++++||++|.|++
T Consensus 81 VVda~eg~~~qT~eh-l~il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVMAQTREH-LAILQL----TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999998543322222 222222 1456 5799999999732111 11122333333333 689999999999999
Q ss_pred HHHHHHHHHhhcCCCCcCCCcee
Q psy10504 257 EMFAEIVREMNFNPEKDNASFCW 279 (286)
Q Consensus 257 ~l~~~i~~~i~~~~~~~~~~~~~ 279 (286)
++++.|.+.....+. .+.+++.
T Consensus 156 ~L~~~L~~~~~~~~~-~~~~~rl 177 (614)
T PRK10512 156 ALREHLLQLPEREHA-AQHRFRL 177 (614)
T ss_pred HHHHHHHHhhccccC-cCCCceE
Confidence 999999876544332 3445443
No 209
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.77 E-value=9e-18 Score=140.47 Aligned_cols=145 Identities=20% Similarity=0.177 Sum_probs=94.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCC--------C---------ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFM--------E---------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~--------~---------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
+++|+++|++++|||||+++|+..... . ...+.+.+.....+. ....++.|+||||+.+|.
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~--~~~~~i~~iDtPG~~~~~ 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE--TANRHYAHVDCPGHADYI 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec--CCCeEEEEEECcCHHHHH
Confidence 478999999999999999999863100 0 011222222222333 333458899999999988
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC--
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG-- 241 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~-- 241 (286)
......+..+|++++|+|++.+...+... .+..+.. .++| +|+++||+|+....... ...+...+....+
T Consensus 80 ~~~~~~~~~~D~~ilVvda~~g~~~~~~~-~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 80 KNMITGAAQMDGAILVVSATDGPMPQTRE-HLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHhhhCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 87788889999999999998764433322 2233332 2666 78999999986222111 1122333333333
Q ss_pred ---CCEEEEeCCCCCcH
Q psy10504 242 ---CPFIEASAKNKTNV 255 (286)
Q Consensus 242 ---~~~~~vSa~~~~gv 255 (286)
++++++||++|.|.
T Consensus 155 ~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 155 GDNTPIVRGSALKALEG 171 (195)
T ss_pred ccCCeEEEeeCccccCC
Confidence 68999999999885
No 210
>PRK12736 elongation factor Tu; Reviewed
Probab=99.77 E-value=1.3e-17 Score=154.06 Aligned_cols=170 Identities=16% Similarity=0.179 Sum_probs=111.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCC-----------------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME-----------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.+.++|+++|++++|||||+++|++..... ...+.+.+.. ...+......+.|+|||||++
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~--~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTA--HVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEE--eeEecCCCcEEEEEECCCHHH
Confidence 357999999999999999999998621100 0122222222 233333334588999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG 241 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 241 (286)
|.......+..+|++++|+|++++...+.... +..+.. .++| +|+++||+|+.+..... ...+...+.+..+
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~-~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREH-ILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhHHHH-HHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 98777777889999999999988644333322 222332 2678 67889999987322211 1123333433443
Q ss_pred -----CCEEEEeCCCCC--------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 242 -----CPFIEASAKNKT--------NVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 242 -----~~~~~vSa~~~~--------gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
++++++||++|. ++.++++.+.+.++......+.+++
T Consensus 163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r 212 (394)
T PRK12736 163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTPERDTDKPFL 212 (394)
T ss_pred CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCCCCCCCCCeE
Confidence 589999999983 6889999999888755444455554
No 211
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.76 E-value=1.2e-17 Score=154.88 Aligned_cols=173 Identities=16% Similarity=0.111 Sum_probs=107.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc----CCCccceEEE--E------------EE----EC--C----eEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY----DPTIEDFYRK--E------------IE----VD--K----APCV 153 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~----~~t~~~~~~~--~------------~~----~~--~----~~~~ 153 (286)
.+.++|+++|+.++|||||+.+|.+....... .+.+.+.... . +. .+ + ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 35699999999999999999999653111110 1111110000 0 00 00 1 1245
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHH
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTL 231 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~ 231 (286)
+++||||||++|..........+|++++|+|++++. ..+.... +..+.. . ...|+++|+||+|+.+..... ...
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~-l~~l~~-~--~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEH-LMALDI-I--GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHH-HHHHHH-c--CCCcEEEEEEeeccccchhHHHHHH
Confidence 899999999988876666667789999999999754 2222222 222222 1 124789999999997322210 112
Q ss_pred HHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 232 DGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 232 ~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
+...+.+. .+.+++++||++|.|+++++++|.+.++......+.+++
T Consensus 163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~~~~~~~~~r 212 (411)
T PRK04000 163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTPERDLDKPPR 212 (411)
T ss_pred HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCCCCCCCCCce
Confidence 22333322 147899999999999999999999988655444444543
No 212
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.76 E-value=3.8e-17 Score=140.51 Aligned_cols=152 Identities=21% Similarity=0.223 Sum_probs=106.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hhhhhcccCcc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SMRDLYIKNGQ 177 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~~~~~~~~~d 177 (286)
+|+++|.+|+|||||+++|.+... ...++.++.+.....+.+++.. +++|||||+.+.. .....+++++|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~--i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAK--IQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeE--EEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998653 4556666666666777777765 8999999975432 12345789999
Q ss_pred EEEEEEECCCcc-cHHHHHHHHH-----------------------------------------HHHHH-----------
Q psy10504 178 GFVVVYSLTNHH-TFQDIKQMKE-----------------------------------------LITRV----------- 204 (286)
Q Consensus 178 ~vilv~d~~~~~-s~~~~~~~~~-----------------------------------------~i~~~----------- 204 (286)
++++|+|++++. ..+.+...+. .+..+
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 2222222111 00000
Q ss_pred ------------hCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 205 ------------KGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 205 ------------~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.....+|+++|+||+|+. ...+...++. ..+++++||+++.|++++|+.+.+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~------~~~~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLI------SIEELDLLAR--QPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCC------CHHHHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 011246999999999986 1233333433 246899999999999999999998663
No 213
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.76 E-value=3.9e-17 Score=140.71 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC--------Ccc-----------CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFM--------EKY-----------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~--------~~~-----------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
+|+++|++|+|||||+++|+...-. ... .+.+.......+..++ .++.+|||||+.+|.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~--~~i~liDTPG~~~f~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWED--TKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECC--EEEEEEeCCCccchH
Confidence 4899999999999999999863110 000 0000111223334444 458999999999999
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
..+..+++.+|++++|+|++++...+ ...++..+.. .++|+++++||+|+.
T Consensus 79 ~~~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 79 AEVERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECcccc
Confidence 98999999999999999999876443 3344444443 278999999999986
No 214
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=7.5e-18 Score=152.19 Aligned_cols=166 Identities=19% Similarity=0.218 Sum_probs=129.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCC--------------CccCCCcc--ceEEEEEEE-CCeEEEEEEEeCCCcccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFM--------------EKYDPTIE--DFYRKEIEV-DKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~--------------~~~~~t~~--~~~~~~~~~-~~~~~~l~l~DtpG~~~~ 165 (286)
-+..|+.|-++|||||.+|++.. .+. +.+.+-+. +...-.+.. +|..+.++++|||||-+|
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 45789999999999999999862 111 11222222 222233333 457889999999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC---C
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG---C 242 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~ 242 (286)
..-..+.+..|.++++|+|++.+...+.+...+..+.. +.-++-|+||+|++.++.+ ...+++....| .
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~-----~LeIiPViNKIDLP~Adpe---rvk~eIe~~iGid~~ 161 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN-----NLEIIPVLNKIDLPAADPE---RVKQEIEDIIGIDAS 161 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc-----CcEEEEeeecccCCCCCHH---HHHHHHHHHhCCCcc
Confidence 98888899999999999999999999999998888887 8899999999999855443 33344455555 4
Q ss_pred CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 243 PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 243 ~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
..+.+|||+|.|++++++.|++.++..+...+.+.+
T Consensus 162 dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pLk 197 (603)
T COG0481 162 DAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPLK 197 (603)
T ss_pred hheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcce
Confidence 578999999999999999999999998877777754
No 215
>KOG0074|consensus
Probab=99.75 E-value=5.3e-18 Score=129.80 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=124.4
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.++++|+++|..++|||||+..|.+... ....+|. .+..+.+..++. +++++||.+|+...+..|..||.+.|++
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~-GFn~k~v~~~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTN-GFNTKKVEYDGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCCh-hhccccC-CcceEEEeecCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence 346899999999999999999999987533 3333443 344556666553 5699999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--------CCCEEEEeCCC
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--------GCPFIEASAKN 251 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~vSa~~ 251 (286)
|+|+|.+|...++++..-+.++..-.....+|+++..||.|+.-... .+..+... .+.+.+|||.+
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~------~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK------VEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc------hHHHHHhcchhhhhhceEEeeeCcccc
Confidence 99999999999999888777776655556899999999999862222 22222222 25678999999
Q ss_pred CCcHHHHHHHHHHHhh
Q psy10504 252 KTNVNEMFAEIVREMN 267 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~ 267 (286)
++|+..-.+|+.....
T Consensus 164 ~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 164 LEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccCccCcchhhhcCCC
Confidence 9999999999987654
No 216
>KOG0072|consensus
Probab=99.75 E-value=1.9e-18 Score=132.58 Aligned_cols=162 Identities=17% Similarity=0.254 Sum_probs=120.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+..++.++|..|+|||+++-++.-+..+... ||++ +...++.+.+.+ +++||..|+...+..|+.|+.++|++|+|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvttk-Ptig-fnve~v~yKNLk--~~vwdLggqtSirPyWRcYy~dt~avIyV 92 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTTK-PTIG-FNVETVPYKNLK--FQVWDLGGQTSIRPYWRCYYADTDAVIYV 92 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCcccccC-CCCC-cCcccccccccc--ceeeEccCcccccHHHHHHhcccceEEEE
Confidence 6789999999999999998888776665443 3332 223344445555 89999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
+|.+|..........+..+......++..+++++||.|.....-..... ..+.+.+. -+.++++||.+|+|+++..
T Consensus 93 VDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~ 171 (182)
T KOG0072|consen 93 VDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDR-IWQIVKTSAVKGEGLDPAM 171 (182)
T ss_pred EeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhh-eeEEEeeccccccCCcHHH
Confidence 9999988777666655555544455677889999999986322111111 11111111 2779999999999999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
+|+.+.++..
T Consensus 172 DWL~~~l~~~ 181 (182)
T KOG0072|consen 172 DWLQRPLKSR 181 (182)
T ss_pred HHHHHHHhcc
Confidence 9999988753
No 217
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=4.2e-17 Score=138.86 Aligned_cols=158 Identities=16% Similarity=0.231 Sum_probs=102.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc--CCCccCCC---------------ccceEEEEEEEC--------CeEEEEEEEeCC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC--FMEKYDPT---------------IEDFYRKEIEVD--------KAPCVLEILDTA 160 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t---------------~~~~~~~~~~~~--------~~~~~l~l~Dtp 160 (286)
+|+++|+.++|||||+++|+... ......++ +.......+.+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 68999999999999999998632 11111000 001111122232 346779999999
Q ss_pred CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HH
Q psy10504 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ----AL 236 (286)
Q Consensus 161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~ 236 (286)
||++|......+++.+|++++|+|+.++...+....+..... .++|+++|+||+|+...+...+..+.. .+
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~-----~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~i 156 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK-----ERVKPVLVINKIDRLILELKLSPEEAYQRLARI 156 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH-----cCCCEEEEEECCCcchhhhcCCHHHHHHHHHHH
Confidence 999999999999999999999999998876655333332222 268999999999986333333322211 11
Q ss_pred HHh-------c-------------C-CC----EEEEeCCCCC--------cHHHHHHHHHHHhhc
Q psy10504 237 AQS-------W-------------G-CP----FIEASAKNKT--------NVNEMFAEIVREMNF 268 (286)
Q Consensus 237 ~~~-------~-------------~-~~----~~~vSa~~~~--------gv~~l~~~i~~~i~~ 268 (286)
.++ + . .| +.+.||+.|. .+..+|+.|++.++.
T Consensus 157 i~~~n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~~~~~~~~~~~~ 221 (222)
T cd01885 157 IEQVNAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYAVLEMVVKHLPS 221 (222)
T ss_pred HHHHhHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEeccccccchHHHHHHHHhhCCC
Confidence 111 1 1 13 7788888774 566778888777664
No 218
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=2.3e-17 Score=152.43 Aligned_cols=170 Identities=16% Similarity=0.190 Sum_probs=106.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC------------C-----CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF------------M-----EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~------------~-----~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.+.++|+++|+.++|||||+++|.+... . +...+.+.+.. ...+......+.|||||||++
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~--~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTA--HVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeE--EEEEcCCCEEEEEEECCchHH
Confidence 4679999999999999999999974200 0 01122222332 233434444589999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREV--PTLDGQALAQSWG 241 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 241 (286)
|.......+..+|++++|+|++++...+.... +..+.. .++|.+ +++||+|+.+..... ...+...+.+.++
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~-l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQTREH-ILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 98777777788999999999998644333322 222222 167755 689999987322111 1123444555554
Q ss_pred -----CCEEEEeCCCCC--------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 242 -----CPFIEASAKNKT--------NVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 242 -----~~~~~vSa~~~~--------gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
++++++||++|. ++.++++.|.+.++......+.+++
T Consensus 163 ~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r 212 (394)
T TIGR00485 163 FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIPTPERETDKPFL 212 (394)
T ss_pred CCccCccEEECccccccccCCchhHhHHHHHHHHHhcCCCCCCCCCCCeE
Confidence 789999999875 3455666665544433333344443
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.75 E-value=3.7e-17 Score=151.06 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=109.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-------C----------CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-------M----------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-------~----------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.+.++|+++|++++|||||+++|+.... . +...+.+.+.....+..++ .++.|+|||||++
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~--~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETAN--RHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCC--cEEEEEECCCHHH
Confidence 3569999999999999999999986210 0 0011122222222232333 3488999999998
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCC--CCHHHHHHHHHhcC
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQRE--VPTLDGQALAQSWG 241 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~--~~~~~~~~~~~~~~ 241 (286)
|.......+..+|++++|+|+.++...+.. ..+..+.. .++|.+ +++||+|+.+.... ....+...+.+.++
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt~-e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 887777888899999999999886433332 22222222 267865 57999999732111 11123444444443
Q ss_pred -----CCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 242 -----CPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 242 -----~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
++++++||++|. ++.++++.|...++......+.+++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r 214 (396)
T PRK12735 163 FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEPERAIDKPFL 214 (396)
T ss_pred CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCCCccCCCCeE
Confidence 679999999984 7889999998877644444445554
No 220
>KOG0096|consensus
Probab=99.75 E-value=5.6e-18 Score=135.94 Aligned_cols=166 Identities=25% Similarity=0.468 Sum_probs=138.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+|++++|+.|.||||++.+...+.|...+.+|++-.. ...+..+.+.+.|..|||+|++.+..++.-|+-....+++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 579999999999999999999999999999999987333 3333444446889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
+||++..-++.++..|...+.+.. .++||++++||.|... +. ...+.-.+-+..++.++++||+.+.|...-|-|
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~--r~-~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA--RK-VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc--cc-cccccceeeecccceeEEeecccccccccchHH
Confidence 999999999999999999998854 4799999999999862 22 122233344556788999999999999999999
Q ss_pred HHHHhhcCCCCc
Q psy10504 262 IVREMNFNPEKD 273 (286)
Q Consensus 262 i~~~i~~~~~~~ 273 (286)
+++++...+..+
T Consensus 164 LarKl~G~p~Le 175 (216)
T KOG0096|consen 164 LARKLTGDPSLE 175 (216)
T ss_pred HhhhhcCCCCeE
Confidence 999988777543
No 221
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=7.6e-17 Score=132.09 Aligned_cols=159 Identities=19% Similarity=0.230 Sum_probs=108.8
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCC----------cccchhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAG----------TEQFASM 168 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG----------~~~~~~~ 168 (286)
++...+.|+++|.+|||||||+|+|++..-......|.+...... +.+++. +.++|.|| .+.+..+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~ 96 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKL 96 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHH
Confidence 344667999999999999999999999775444444444333333 444443 67899999 4456666
Q ss_pred hhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc----C
Q psy10504 169 RDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW----G 241 (286)
Q Consensus 169 ~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~----~ 241 (286)
...|++. ..++++++|+..+-...+. ++++.+.. .++|++|++||+|+... .+.. ......++.. .
T Consensus 97 i~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~-~~~~-k~l~~v~~~l~~~~~ 169 (200)
T COG0218 97 IEEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKK-SERN-KQLNKVAEELKKPPP 169 (200)
T ss_pred HHHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCCh-hHHH-HHHHHHHHHhcCCCC
Confidence 6677754 5789999999987554443 33333333 38999999999999732 2211 1122233222 2
Q ss_pred CC--EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 242 CP--FIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 242 ~~--~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.. ++.+|+.++.|++++.+.|.+.+.+
T Consensus 170 ~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 170 DDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 22 8899999999999999999988765
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=6.8e-17 Score=130.52 Aligned_cols=153 Identities=18% Similarity=0.229 Sum_probs=96.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCCccc----------chhhhhhccc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAGTEQ----------FASMRDLYIK 174 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~~~~~~ 174 (286)
+|+++|++|+|||||++++.++.+.....++.+... ...+..++ .+.+|||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 489999999999999999996555554444433222 22233333 488999999543 3334444443
Q ss_pred ---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHHHHHHH--hcCCCEEEEe
Q psy10504 175 ---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQ--SWGCPFIEAS 248 (286)
Q Consensus 175 ---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~~~vS 248 (286)
..+++++++|.++..+..... ....+.. .+.|+++++||+|+....... .........+ ....+++++|
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~-~~~~l~~----~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S 152 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLE-MLDWLEE----LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS 152 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHH-HHHHHHH----cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence 457899999998764332221 1222222 157999999999986222111 1111111121 3347899999
Q ss_pred CCCCCcHHHHHHHHHHHh
Q psy10504 249 AKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i 266 (286)
|+++.|+++++++|.+.+
T Consensus 153 a~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 153 SLKGQGIDELRALIEKWL 170 (170)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998753
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.74 E-value=1.1e-17 Score=142.57 Aligned_cols=145 Identities=21% Similarity=0.174 Sum_probs=92.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC--cCC------------------------------CccCCCccceEEEEEEECCeEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG--CFM------------------------------EKYDPTIEDFYRKEIEVDKAPCV 153 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~--~~~------------------------------~~~~~t~~~~~~~~~~~~~~~~~ 153 (286)
+|+++|++++|||||+.+|+.. ... +...+++.+.....+...+..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~-- 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYR-- 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeE--
Confidence 4899999999999999999641 110 011222223344455555544
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-------cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-------TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ- 225 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-------s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~- 225 (286)
+.+|||||+.+|.......+..+|++++|+|++++. ..+....+ ..... ....|+++++||+|+....
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~iiivvNK~Dl~~~~~ 154 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHA-LLART---LGVKQLIVAVNKMDDVTVNW 154 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHH-HHHHH---cCCCeEEEEEEccccccccc
Confidence 899999999888877777788899999999999852 11222222 22222 1236899999999997321
Q ss_pred -CC---CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHH
Q psy10504 226 -RE---VPTLDGQALAQSWG-----CPFIEASAKNKTNVN 256 (286)
Q Consensus 226 -~~---~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~ 256 (286)
+. ....+...+.+..+ ++++++||++|.|++
T Consensus 155 ~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 155 SEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 10 00112222233333 679999999999987
No 224
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.73 E-value=1.6e-16 Score=135.66 Aligned_cols=152 Identities=17% Similarity=0.152 Sum_probs=96.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCC---------------cc---------ceE---------------EEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPT---------------IE---------DFY---------------RKEIE 146 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t---------------~~---------~~~---------------~~~~~ 146 (286)
||+++|+.++|||||+++|..+.+....... +. +.. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976554321100 00 000 01111
Q ss_pred ECCeEEEEEEEeCCCcccchhhhhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 147 VDKAPCVLEILDTAGTEQFASMRDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
..+ ..++++|||||++|.......+. .+|++++|+|++.+..-++. .++..+.. .++|+++|+||+|+.+.
T Consensus 81 ~~~--~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~-~~l~~l~~----~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 81 KSS--KLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTK-EHLGLALA----LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred eCC--cEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCEEEEEECccccCH
Confidence 222 34899999999998765555554 68999999999876543332 23333333 27899999999998622
Q ss_pred CCC-CCHHHHHHHHH--------------------------hcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 225 QRE-VPTLDGQALAQ--------------------------SWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 225 ~~~-~~~~~~~~~~~--------------------------~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
.+. ....+.....+ ...+|++.+||.+|+|++++++.|..
T Consensus 154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 111 11111111111 01248999999999999999887643
No 225
>CHL00071 tufA elongation factor Tu
Probab=99.72 E-value=1.3e-16 Score=148.07 Aligned_cols=170 Identities=16% Similarity=0.151 Sum_probs=106.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC--C---------------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--E---------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~---------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
...++|+++|++++|||||+++|+...-. . ...+.+.+.....+..++ .++.|+|||||.+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~--~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN--RHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC--eEEEEEECCChHH
Confidence 35699999999999999999999863110 0 011111122222233333 4488999999998
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhcC
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSWG 241 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~ 241 (286)
|.......+..+|++++|+|++++..-+... .+..+.. .++| +|+++||+|+.+..... ...+...+.+..+
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~-~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQTKE-HILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHHHH-HHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8877777888999999999998765433322 2222322 2678 77899999997322111 1123333444433
Q ss_pred -----CCEEEEeCCCCCc------------------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 242 -----CPFIEASAKNKTN------------------VNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 242 -----~~~~~vSa~~~~g------------------v~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
++++++||.+|.+ +..+++.|...++......+.+++
T Consensus 163 ~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r 222 (409)
T CHL00071 163 FPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFL 222 (409)
T ss_pred CCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEE
Confidence 6899999999863 466777776655433233344443
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.72 E-value=2.1e-16 Score=134.14 Aligned_cols=157 Identities=19% Similarity=0.216 Sum_probs=101.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCcc-----------CCC---------ccceEEEEEEE---CCeEEEEEEEeCCCc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKY-----------DPT---------IEDFYRKEIEV---DKAPCVLEILDTAGT 162 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----------~~t---------~~~~~~~~~~~---~~~~~~l~l~DtpG~ 162 (286)
+|+++|++|+|||||+++|+........ ..+ +.......+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999875432210 000 00111111212 355677999999999
Q ss_pred ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH-----------H
Q psy10504 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT-----------L 231 (286)
Q Consensus 163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~-----------~ 231 (286)
.+|......++..+|++++|+|+.+..+... ..++..... .++|+++|+||+|+...+...+. .
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~ 156 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIID 156 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHH
Confidence 9998888899999999999999998766543 233333322 26899999999998521111111 1
Q ss_pred HHHHHHHhcC-------CC----EEEEeCCCCCcHH--------HHHHHHHHHhh
Q psy10504 232 DGQALAQSWG-------CP----FIEASAKNKTNVN--------EMFAEIVREMN 267 (286)
Q Consensus 232 ~~~~~~~~~~-------~~----~~~vSa~~~~gv~--------~l~~~i~~~i~ 267 (286)
+...++...+ .| +++.||+.+.++. ++++.|.+.++
T Consensus 157 ~~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~ 211 (213)
T cd04167 157 EVNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIP 211 (213)
T ss_pred HHHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCC
Confidence 1111222222 22 7789999887665 77777777654
No 227
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=3.4e-16 Score=146.22 Aligned_cols=171 Identities=19% Similarity=0.159 Sum_probs=107.9
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC------cC-----------CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG------CF-----------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~------~~-----------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
....++|+++||+++|||||+++|.+. .. .+...+.+.+.....+..+ ..++.|+|||||.
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~--~~~i~~iDtPGh~ 135 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETA--KRHYAHVDCPGHA 135 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCC--CeEEEEEECCCcc
Confidence 346799999999999999999999731 00 0111223333333333333 3458899999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCCC--HHHHHHHHHhc
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREVP--TLDGQALAQSW 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~~--~~~~~~~~~~~ 240 (286)
+|.......+..+|++++|+|++++..-++ ...+..+.. .++| +|+++||+|+.+...... ..+...+....
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 987777677788999999999988654333 222222332 2688 578899999973211111 11222222222
Q ss_pred -----CCCEEEEeCC---CCCc-------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 241 -----GCPFIEASAK---NKTN-------VNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 241 -----~~~~~~vSa~---~~~g-------v~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
.++++++||. +|.| +.+|++.+.+.++......+.+++
T Consensus 211 ~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr 263 (447)
T PLN03127 211 KFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEPVRVLDKPFL 263 (447)
T ss_pred CCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCCCcccccceE
Confidence 2678888876 4555 788999998887655444455554
No 228
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=2e-16 Score=149.69 Aligned_cols=158 Identities=18% Similarity=0.288 Sum_probs=123.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI-- 173 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~-- 173 (286)
+..+|+++|.||+|||||+|++++.. .+.++++.+-+..+..+...+.+ ++++|.||...... ..+.|+
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~--i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHE--IEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCce--EEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 45679999999999999999999954 47888888888889999999988 88999999654333 223333
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
...|+++-|+|+++.+ .++.-.++.+.- ++|++++.|++|.. ++.--..+.+.+.+..|+|++++||++|.
T Consensus 80 ~~~D~ivnVvDAtnLe--RnLyltlQLlE~-----g~p~ilaLNm~D~A--~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~ 150 (653)
T COG0370 80 GKPDLIVNVVDATNLE--RNLYLTLQLLEL-----GIPMILALNMIDEA--KKRGIRIDIEKLSKLLGVPVVPTVAKRGE 150 (653)
T ss_pred CCCCEEEEEcccchHH--HHHHHHHHHHHc-----CCCeEEEeccHhhH--HhcCCcccHHHHHHHhCCCEEEEEeecCC
Confidence 3469999999999864 223333333333 88999999999986 33334556788999999999999999999
Q ss_pred cHHHHHHHHHHHhhcCCC
Q psy10504 254 NVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 254 gv~~l~~~i~~~i~~~~~ 271 (286)
|++++.+.+.+....+..
T Consensus 151 G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 151 GLEELKRAIIELAESKTT 168 (653)
T ss_pred CHHHHHHHHHHhcccccc
Confidence 999999999987766553
No 229
>PRK00049 elongation factor Tu; Reviewed
Probab=99.71 E-value=3.5e-16 Score=144.51 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=109.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC-----------------CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-----------------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-----------------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
...++|+++|++++|||||+++|+..... +...+.+.+.....+..++ ..+.|+|||||.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~--~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEK--RHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCC--eEEEEEECCCHHH
Confidence 46799999999999999999999863110 0012222222222333333 4488999999998
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCC--CHHHHHHHHHhc-
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREV--PTLDGQALAQSW- 240 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~--~~~~~~~~~~~~- 240 (286)
|.......+..+|++++|+|++++..-+.. ..+..+.. .++|.+ +++||+|+.+..... ...+...+....
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt~-~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~ 162 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQTR-EHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHHH-HHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcC
Confidence 887777788999999999999886443332 22333332 268976 589999997321111 111233333332
Q ss_pred ----CCCEEEEeCCCCC----------cHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 241 ----GCPFIEASAKNKT----------NVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 241 ----~~~~~~vSa~~~~----------gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
.++++++||+++. |+..+++.|...++......+.+++
T Consensus 163 ~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r 214 (396)
T PRK00049 163 FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTPERAIDKPFL 214 (396)
T ss_pred CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCCCCCCCCCeE
Confidence 3689999999875 5778888888876544444445554
No 230
>KOG1423|consensus
Probab=99.71 E-value=4.1e-16 Score=134.24 Aligned_cols=168 Identities=20% Similarity=0.198 Sum_probs=113.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-----------
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------- 167 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------- 167 (286)
..+.+.|+++|.||+|||||.|.+.+.++.. ....|++......+.-+..+ +.|+||||.-.-..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQ--lvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQ--LVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceE--EEEecCCcccccchhhhHHHHHHhh
Confidence 4577999999999999999999999987754 34455555555555555555 89999999321111
Q ss_pred -hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC------------CCCHHHHH
Q psy10504 168 -MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR------------EVPTLDGQ 234 (286)
Q Consensus 168 -~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~------------~~~~~~~~ 234 (286)
..+..+..||.+++++|+++....-. ...+..+..+. ++|-++|.||.|.....+ .......+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys---~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS---KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh---cCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 12345677999999999997432222 22344555443 789999999999762211 11111111
Q ss_pred HHHHhcCC----------------CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcC
Q psy10504 235 ALAQSWGC----------------PFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274 (286)
Q Consensus 235 ~~~~~~~~----------------~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~ 274 (286)
-..+.... .+|.+||++|+|++++-++|+..++..+-+..
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~ 278 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYP 278 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCC
Confidence 11111112 38999999999999999999999987775544
No 231
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.70 E-value=2.5e-16 Score=148.33 Aligned_cols=151 Identities=21% Similarity=0.166 Sum_probs=94.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCcc----------CCCc----------------------cceEEEEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKY----------DPTI----------------------EDFYRKEIEV 147 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~----------~~t~----------------------~~~~~~~~~~ 147 (286)
...++|+++|++++|||||+.+|+.. .+.... .+++ .+.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 45699999999999999999999863 111100 1111 1222222333
Q ss_pred CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE 227 (286)
Q Consensus 148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~ 227 (286)
++ .++.|+|||||++|.......+..+|++++|+|++++..-+....+. .+.. .. ..|+++++||+|+.+....
T Consensus 105 ~~--~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~-l~~~-lg--~~~iIvvvNKiD~~~~~~~ 178 (474)
T PRK05124 105 EK--RKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF-IATL-LG--IKHLVVAVNKMDLVDYSEE 178 (474)
T ss_pred CC--cEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH-HHHH-hC--CCceEEEEEeeccccchhH
Confidence 33 45889999999998776666689999999999998764332222221 1222 11 2478999999999732221
Q ss_pred CCHH---HHHHHHHhc----CCCEEEEeCCCCCcHHHH
Q psy10504 228 VPTL---DGQALAQSW----GCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 228 ~~~~---~~~~~~~~~----~~~~~~vSa~~~~gv~~l 258 (286)
.-.. +...+.+.. ..+++++||++|+|++++
T Consensus 179 ~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1111 111222232 378999999999999764
No 232
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.70 E-value=2.2e-16 Score=146.35 Aligned_cols=147 Identities=24% Similarity=0.224 Sum_probs=93.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCCCcc----------CC----------------------CccceEEEEEEECCe
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKY----------DP----------------------TIEDFYRKEIEVDKA 150 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~----------~~----------------------t~~~~~~~~~~~~~~ 150 (286)
++|+++|++++|||||+.+|+.. ...... .+ .+.+.....+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 47999999999999999999752 111100 11 111222233334443
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC-
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP- 229 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~- 229 (286)
++.|+|||||++|.......+..+|++++|+|++++...+....+. .+.. .. ..++++++||+|+.+.....-
T Consensus 81 --~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~-~~--~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 81 --KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASL-LG--IRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred --EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHH-cC--CCcEEEEEEecccccchHHHHH
Confidence 5889999999999877777889999999999998865443333222 1222 11 236889999999973221110
Q ss_pred --HHHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504 230 --TLDGQALAQSWG---CPFIEASAKNKTNVNE 257 (286)
Q Consensus 230 --~~~~~~~~~~~~---~~~~~vSa~~~~gv~~ 257 (286)
..+...+.+..+ ++++++||++|+|+++
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 111222223333 5799999999999985
No 233
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=3e-16 Score=146.50 Aligned_cols=174 Identities=11% Similarity=0.071 Sum_probs=109.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcC---CCccCCCcc-ceEEEEE---------------EECC------------
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCF---MEKYDPTIE-DFYRKEI---------------EVDK------------ 149 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~---~~~~~~t~~-~~~~~~~---------------~~~~------------ 149 (286)
....++|+++||.++|||||+.+|.+... ..+.....+ +...... ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 34678999999999999999999997321 111100000 0000000 0000
Q ss_pred ----eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 150 ----APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH-HTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 150 ----~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
....+.|+|+|||++|.......+..+|++++|+|++++ ...+..+. +..+.. .. -.|+++|+||+|+.+.
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~eh-l~i~~~-lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEH-LAAVEI-MK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHH-HHHHHH-cC--CCcEEEEEecccccCH
Confidence 013588999999999988888888999999999999975 23332222 222222 11 2368999999999732
Q ss_pred CCC-CCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 225 QRE-VPTLDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 225 ~~~-~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
... ....+...+.+. .+.+++++||++|+|++.|++.|.+.++......+.+++
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~~r~~~~p~r 244 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIPKRDLTSPPR 244 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCCCCCCCCCcE
Confidence 111 011122222222 257899999999999999999999888765444445544
No 234
>PLN03126 Elongation factor Tu; Provisional
Probab=99.70 E-value=4.2e-16 Score=146.41 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=95.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCc------CCC-----------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGC------FME-----------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~------~~~-----------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
....++|+++|++++|||||+++|+... ... ...+.+.+.....+..++. .+.++|||||+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~--~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENR--HYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCc--EEEEEECCCHH
Confidence 4467899999999999999999998521 111 0111111222223334444 48899999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhc
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSW 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 240 (286)
+|.......+..+|++++|+|++++...+.... +..+.. .++| +++++||+|+.+.+.. ....+...+.+..
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~-~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~ 230 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQTKEH-ILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSY 230 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHH-HHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhc
Confidence 998877888889999999999998754444332 233332 2778 7789999999732111 1111333333433
Q ss_pred -----CCCEEEEeCCCCC
Q psy10504 241 -----GCPFIEASAKNKT 253 (286)
Q Consensus 241 -----~~~~~~vSa~~~~ 253 (286)
.++++++||.+|.
T Consensus 231 g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 231 EFPGDDIPIISGSALLAL 248 (478)
T ss_pred CCCcCcceEEEEEccccc
Confidence 3689999999874
No 235
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.67 E-value=9e-16 Score=120.41 Aligned_cols=135 Identities=18% Similarity=0.211 Sum_probs=92.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~~~d~vil 181 (286)
||+++|+.|+|||||+++|.+.......+.. +.+. =.++||||.- .|..-......+||.+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~~KTq~--------i~~~-----~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~l 69 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRYKKTQA--------IEYY-----DNTIDTPGEYIENPRFYHALIVTAQDADVVLL 69 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCcCccce--------eEec-----ccEEECChhheeCHHHHHHHHHHHhhCCEEEE
Confidence 7999999999999999999886442221111 1222 2359999942 233233334578999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l~~ 260 (286)
|.|++++.+.-.- .+.. .-+.|+|=|+||+|+..+. .+.+..+...+..|+ .+|++|+.+|+|+++|.+
T Consensus 70 l~dat~~~~~~pP-----~fa~---~f~~pvIGVITK~Dl~~~~--~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 70 LQDATEPRSVFPP-----GFAS---MFNKPVIGVITKIDLPSDD--ANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EecCCCCCccCCc-----hhhc---ccCCCEEEEEECccCccch--hhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 9999986532211 1111 1257999999999997322 234555666666674 579999999999999998
Q ss_pred HHH
Q psy10504 261 EIV 263 (286)
Q Consensus 261 ~i~ 263 (286)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 874
No 236
>KOG4423|consensus
Probab=99.67 E-value=4.9e-18 Score=135.82 Aligned_cols=168 Identities=30% Similarity=0.448 Sum_probs=138.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCe-EEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKA-PCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.-+|+.|+|.-++|||+++.++....+...|..|++ ++..+.+..+.. .+++++||..||++|..|..-|++.+++.+
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~ 103 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAF 103 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceE
Confidence 447999999999999999999999999988888887 444455555543 356889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVN 256 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~ 256 (286)
+|||++...+++....|.+.+-... ....+|+++..||||...........+...+.++.| ..-+++|+|.+.+++
T Consensus 104 iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~ 183 (229)
T KOG4423|consen 104 IVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIP 183 (229)
T ss_pred EEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChh
Confidence 9999999999999999998886533 223578899999999873333333466778888888 468999999999999
Q ss_pred HHHHHHHHHhhcCC
Q psy10504 257 EMFAEIVREMNFNP 270 (286)
Q Consensus 257 ~l~~~i~~~i~~~~ 270 (286)
|.-+.+++.+.-+.
T Consensus 184 Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 184 EAQRELVEKILVND 197 (229)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876443
No 237
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.66 E-value=1.1e-15 Score=143.01 Aligned_cols=149 Identities=16% Similarity=0.179 Sum_probs=97.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc--CCCc------------------------------cCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEK------------------------------YDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~~ 149 (286)
..+++|+++||.++|||||+.+|+... .... ..+. ........+..
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGi--Ti~~~~~~~~~ 82 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGI--TIDIALWKFET 82 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCc--eEEEEEEEecC
Confidence 356899999999999999999887511 1100 0000 11112223344
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHH-------HHHHHHHHHHHHhCCCCCc-EEEEEeCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQ-------DIKQMKELITRVKGSERVP-ILLVANKLDL 221 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 221 (286)
....++++|||||++|......++..+|++|+|+|++++. ++ .....+..... .++| +|+++||+|+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence 4556999999999999999999999999999999999742 21 22222222222 2664 7889999998
Q ss_pred CCCCC-----CCCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504 222 ASHQR-----EVPTLDGQALAQSWG-----CPFIEASAKNKTNVNE 257 (286)
Q Consensus 222 ~~~~~-----~~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~ 257 (286)
.+... .....+...+.+..+ ++++++||++|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 61110 011334555555555 6799999999999853
No 238
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.66 E-value=3.6e-15 Score=130.65 Aligned_cols=133 Identities=18% Similarity=0.231 Sum_probs=84.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCCCc--------cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFMEK--------YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~--------~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
-+|+++|++|+|||||+++|+.. ..... ...++. +.......+....+.+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 46999999999999999999852 11110 001111 1122223344444559999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP 243 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 243 (286)
+|......+++.+|++++|+|++++...+ ...++..... .++|+++++||+|+..... ......+...++.+
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~----~~~P~iivvNK~D~~~a~~---~~~~~~l~~~l~~~ 154 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL----RGIPIITFINKLDREGRDP---LELLDEIEEELGID 154 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh----cCCCEEEEEECCccCCCCH---HHHHHHHHHHHCCC
Confidence 99887788899999999999998864332 2233333222 3789999999999863221 12233444555544
Q ss_pred EE
Q psy10504 244 FI 245 (286)
Q Consensus 244 ~~ 245 (286)
.+
T Consensus 155 ~~ 156 (267)
T cd04169 155 CT 156 (267)
T ss_pred ce
Confidence 33
No 239
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.65 E-value=1.2e-15 Score=133.87 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=78.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc--CcCCC-----------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS--GCFME-----------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~--~~~~~-----------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
+|+++|++|+|||||+++|+. +.... ...+.+.+.....+.+.+.. +.+|||||+.+|.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~--i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHR--INIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEE--EEEEECCCcHHHH
Confidence 489999999999999999974 11100 11122223333445555554 8899999999998
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
..+..+++.+|++++|+|+.++...+... .+..+.. .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t~~-~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQTET-VWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCCCC
Confidence 88899999999999999998865444332 2333332 2789999999999873
No 240
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.65 E-value=2e-15 Score=141.14 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=94.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME------------------------------KYDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------------------------------~~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|+.++|||||+.+|+. +.... ...+.+.+..... +..
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~--~~~ 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEE--Ecc
Confidence 3568999999999999999999975 21110 0011111222222 333
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc---H---HHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT---F---QDIKQMKELITRVKGSERVP-ILLVANKLDLA 222 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~---~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~ 222 (286)
....+.|+|||||.+|.......+..+|++++|+|++++.. + ......+..+.. .++| +|+++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 44458999999999999888888999999999999987631 1 112222222222 2666 67899999954
Q ss_pred CC--C-CC--CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504 223 SH--Q-RE--VPTLDGQALAQSWG-----CPFIEASAKNKTNVNE 257 (286)
Q Consensus 223 ~~--~-~~--~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~ 257 (286)
.. . .. ....+...+....+ ++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 11 1 11 11122233333333 6799999999999964
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.65 E-value=5.5e-15 Score=140.55 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=78.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--CcCCC--c------cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--GCFME--K------YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAG 161 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~--~------~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG 161 (286)
+.-+|+|+|++++|||||+++|+. +.... . ...+.. ........+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999974 21100 0 000100 11122222333345589999999
Q ss_pred cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
|.+|......+++.+|++|+|+|++++...+ ...++..... .++|+++++||+|+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL----RDTPIFTFINKLDRD 144 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh----cCCCEEEEEECCccc
Confidence 9999987888899999999999999865333 2333333222 389999999999986
No 242
>KOG1489|consensus
Probab=99.64 E-value=2.5e-15 Score=130.05 Aligned_cols=155 Identities=23% Similarity=0.261 Sum_probs=117.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hhhcccCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RDLYIKNG 176 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~~~~~~~ 176 (286)
..|.++|-||+|||||++++...+. +..|+.|+-.....++.+++... +++-|.||..+-..+ .-+.+..|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q-~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQ-ITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccce-eEeccCccccccccccCcccHHHHHHHHhh
Confidence 4578999999999999999998654 77888887766666666666553 899999996543332 12335679
Q ss_pred cEEEEEEECCCc---ccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCC
Q psy10504 177 QGFVVVYSLTNH---HTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKN 251 (286)
Q Consensus 177 d~vilv~d~~~~---~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~ 251 (286)
+.+++|+|++.+ ..++.+..+..++..+. ...+.|.++|+||+|+++++. .....+++...-+ ++++||++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----NLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH----HHHHHHHHHcCCCcEEEeeecc
Confidence 999999999998 77777777766666554 445789999999999962222 1235666666644 99999999
Q ss_pred CCcHHHHHHHHHH
Q psy10504 252 KTNVNEMFAEIVR 264 (286)
Q Consensus 252 ~~gv~~l~~~i~~ 264 (286)
++|+.++++.+.+
T Consensus 352 ~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 352 GEGLEELLNGLRE 364 (366)
T ss_pred ccchHHHHHHHhh
Confidence 9999999988765
No 243
>PRK13351 elongation factor G; Reviewed
Probab=99.64 E-value=1.1e-15 Score=150.54 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=82.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--------CC-----cc------CCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--------ME-----KY------DPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--------~~-----~~------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|+.|+|||||+++|+...- .. ++ .+.+.......+.+.+ +.+.+|||||+.
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--~~i~liDtPG~~ 84 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--HRINLIDTPGHI 84 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC--EEEEEEECCCcH
Confidence 457999999999999999999985211 00 00 0011111122344444 458999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
+|...+..+++.+|++++|+|++++...+....|. .+.. .++|+++++||+|+..
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG 139 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence 99999999999999999999999987766554443 2222 2789999999999874
No 244
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.64 E-value=2.5e-15 Score=146.67 Aligned_cols=150 Identities=22% Similarity=0.196 Sum_probs=95.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc----------cCCCc----------------------cceEEEEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK----------YDPTI----------------------EDFYRKEIEV 147 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~----------~~~t~----------------------~~~~~~~~~~ 147 (286)
...++|+++|++++|||||+++|+.. ..... ..+++ .+.....+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34588999999999999999999863 22211 12221 1112223333
Q ss_pred CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE 227 (286)
Q Consensus 148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~ 227 (286)
++. ++.|+|||||++|.......+..+|++++|+|++++..-+....+. .+... ...|++|++||+|+.+....
T Consensus 102 ~~~--~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~---~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 102 PKR--KFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL---GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred CCc--eEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh---CCCeEEEEEEecccccchhH
Confidence 444 4789999999988776666788999999999998765333222222 22221 13578899999998631221
Q ss_pred CCH---HHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504 228 VPT---LDGQALAQSWG---CPFIEASAKNKTNVNE 257 (286)
Q Consensus 228 ~~~---~~~~~~~~~~~---~~~~~vSa~~~~gv~~ 257 (286)
.-. .+...+.+..+ .+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 111 11222333444 4699999999999874
No 245
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.64 E-value=5.6e-15 Score=128.79 Aligned_cols=159 Identities=18% Similarity=0.222 Sum_probs=115.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-----chhhhhh---c
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-----FASMRDL---Y 172 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-----~~~~~~~---~ 172 (286)
+..+.|+|.|.||||||||++++.+... .++|+.|+......++..++.. +|++||||.-+ .+.+-.. .
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R--~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLR--IQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCce--EEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3567899999999999999999999655 7899999988888888888877 89999999432 1111111 1
Q ss_pred c-cCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HHHhcCCCEEEEe
Q psy10504 173 I-KNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LAQSWGCPFIEAS 248 (286)
Q Consensus 173 ~-~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~vS 248 (286)
+ .-.++++++||.+. +-+.+.-..++..+.... +.|+++|+||+|..+.+. ..+... +...-+.....++
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~---~~~~~~~~~~~~~~~~~~~~ 317 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEK---LEEIEASVLEEGGEEPLKIS 317 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhH---HHHHHHHHHhhcccccccee
Confidence 1 33689999999987 445666666777776643 489999999999872222 222232 3333334467899
Q ss_pred CCCCCcHHHHHHHHHHHhhc
Q psy10504 249 AKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~ 268 (286)
+..+.+++.+-+.+.....+
T Consensus 318 ~~~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 318 ATKGCGLDKLREEVRKTALE 337 (346)
T ss_pred eeehhhHHHHHHHHHHHhhc
Confidence 99999999988888777543
No 246
>KOG0077|consensus
Probab=99.63 E-value=6.4e-16 Score=121.60 Aligned_cols=154 Identities=17% Similarity=0.193 Sum_probs=118.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC---CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM---EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+.-|++++|..|+|||||++.|.+++.. +...|| +..+.+.+-. ++.+|.+||..-+..|..|+..+|++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPT-----SE~l~Ig~m~--ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT-----SEELSIGGMT--FTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCC-----hHHheecCce--EEEEccccHHHHHHHHHHHHhhhcee
Confidence 4468999999999999999999986553 333334 3345566666 89999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---HhcC--------------C
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA---QSWG--------------C 242 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~~~~--------------~ 242 (286)
++.+|+-|.+.+.+.+.-++.+........+|+++.+||+|.+.+.. +++.+... ...+ .
T Consensus 92 v~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s---e~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ 168 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS---EDELRFHLGLSNFTTGKGKVNLTDSNVRPL 168 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc---HHHHHHHHHHHHHhcccccccccCCCCCeE
Confidence 99999999999999988877777665556899999999999985442 22222211 1111 2
Q ss_pred CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 243 PFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 243 ~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
.++-||...+.|..+.|.|+.+.+
T Consensus 169 evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 169 EVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEEEccCccceeeeehhhhc
Confidence 367889999999888888887654
No 247
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.62 E-value=7.2e-15 Score=123.26 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=94.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc----eEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhccc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED----FYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIK 174 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~----~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~ 174 (286)
++||+++|++|+|||||+|++++.........+++. .....+.... ...+.+|||||...... +....+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPK-FPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCC-CCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 378999999999999999999985543322111110 0011111111 22488999999754322 2233367
Q ss_pred CccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC------CHHH-HHH----HH---Hh
Q psy10504 175 NGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQREV------PTLD-GQA----LA---QS 239 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~------~~~~-~~~----~~---~~ 239 (286)
.+|+++++.+. + +... ..++..+... +.|+++|+||+|+....... ...+ .+. .. ..
T Consensus 80 ~~d~~l~v~~~--~--~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~ 151 (197)
T cd04104 80 EYDFFIIISST--R--FSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQE 151 (197)
T ss_pred CcCEEEEEeCC--C--CCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHH
Confidence 78988887432 2 2222 3345555442 67999999999984211110 0111 111 11 12
Q ss_pred cC---CCEEEEeCC--CCCcHHHHHHHHHHHhhcCC
Q psy10504 240 WG---CPFIEASAK--NKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 240 ~~---~~~~~vSa~--~~~gv~~l~~~i~~~i~~~~ 270 (286)
.+ .+++.+|+. .+.|+..+.+.+...+++.+
T Consensus 152 ~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 152 AGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred cCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 12 478999998 57899999999999988643
No 248
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.62 E-value=3.8e-15 Score=130.85 Aligned_cols=150 Identities=16% Similarity=0.224 Sum_probs=97.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCcc-----CCC--------------ccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKY-----DPT--------------IEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----~~t--------------~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
+|+++|++|+|||||+++++...-.... .++ +.......+.+++. .+.+|||||+.+|.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~--~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGH--KINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCE--EEEEEECcCHHHHH
Confidence 4899999999999999999753211000 000 00111233444444 48899999999888
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE 246 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (286)
..+..+++.+|++++|+|++++........|. .+.. .++|.++++||+|+.... .......+...++.+++.
T Consensus 79 ~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~---~~~~~~~l~~~~~~~~~~ 150 (268)
T cd04170 79 GETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD---FDKTLAALQEAFGRPVVP 150 (268)
T ss_pred HHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC---HHHHHHHHHHHhCCCeEE
Confidence 88888999999999999999876554443332 2222 278999999999987321 223344555556655544
Q ss_pred --EeCCCCCcHHHHHHHHHHH
Q psy10504 247 --ASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 247 --vSa~~~~gv~~l~~~i~~~ 265 (286)
+...++.++..+.+.+...
T Consensus 151 ~~ip~~~~~~~~~~vd~~~~~ 171 (268)
T cd04170 151 LQLPIGEGDDFKGVVDLLTEK 171 (268)
T ss_pred EEecccCCCceeEEEEcccCE
Confidence 4456666666655555443
No 249
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.62 E-value=9.6e-15 Score=131.98 Aligned_cols=169 Identities=15% Similarity=0.220 Sum_probs=118.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCc-------------cceEEEEEEECCeEEEEEEEeCCCcccchhhh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTI-------------EDFYRKEIEVDKAPCVLEILDTAGTEQFASMR 169 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~ 169 (286)
-+|+|+-|.++|||||++.|+.+ .|.....-.- .+...+...+....+.+.++|||||.+|..-.
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEV 85 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEV 85 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchh
Confidence 47999999999999999999873 3322211100 01222222333344559999999999999999
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-------cCC
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-------WGC 242 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~~~ 242 (286)
.+.+.-.|++++++|+.++. +.+..--+.++. ..+.+-|||+||+|.+++.+..-..+...+... +..
T Consensus 86 ERvl~MVDgvlLlVDA~EGp----MPQTrFVlkKAl-~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdF 160 (603)
T COG1217 86 ERVLSMVDGVLLLVDASEGP----MPQTRFVLKKAL-ALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDF 160 (603)
T ss_pred hhhhhhcceEEEEEEcccCC----CCchhhhHHHHH-HcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCC
Confidence 99999999999999999865 233222222211 127777999999999866655444444444443 347
Q ss_pred CEEEEeCCCC----------CcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 243 PFIEASAKNK----------TNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 243 ~~~~vSa~~~----------~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
|++..||+.| .++.-||+.|++.++......+.|+.
T Consensus 161 PivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ 206 (603)
T COG1217 161 PIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLDEPLQ 206 (603)
T ss_pred cEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCCCCCCCeE
Confidence 8999999977 46889999999999988766666653
No 250
>COG2262 HflX GTPases [General function prediction only]
Probab=99.61 E-value=2e-14 Score=128.89 Aligned_cols=157 Identities=19% Similarity=0.226 Sum_probs=115.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC-eEEEEEEEeCCCccc---------chhhhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK-APCVLEILDTAGTEQ---------FASMRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-~~~~l~l~DtpG~~~---------~~~~~~~ 171 (286)
.-+.|+++|-.|+|||||+|+|.+... ..+.-.++-+.....+.+.+ .. +.+-||-|--+ |.+. -.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~--vlLtDTVGFI~~LP~~LV~AFksT-LE 267 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRK--VLLTDTVGFIRDLPHPLVEAFKST-LE 267 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCce--EEEecCccCcccCChHHHHHHHHH-HH
Confidence 347899999999999999999998544 45666666677778888875 44 77899999332 2221 12
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
-...+|.++.|+|+++|...+.+......+... ...++|+|+|.||+|+..+.. ....+..... ..+.+||++
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~-~~v~iSA~~ 340 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADEIPIILVLNKIDLLEDEE-----ILAELERGSP-NPVFISAKT 340 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCCCCEEEEEecccccCchh-----hhhhhhhcCC-CeEEEEecc
Confidence 346799999999999997777777766666664 344699999999999863222 1112222222 589999999
Q ss_pred CCcHHHHHHHHHHHhhcC
Q psy10504 252 KTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~ 269 (286)
|.|++.|.+.|.+.+...
T Consensus 341 ~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 341 GEGLDLLRERIIELLSGL 358 (411)
T ss_pred CcCHHHHHHHHHHHhhhc
Confidence 999999999999988754
No 251
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.61 E-value=7.2e-15 Score=125.33 Aligned_cols=177 Identities=18% Similarity=0.271 Sum_probs=111.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCcc--CCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-----hhhcccCccE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKY--DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-----RDLYIKNGQG 178 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-----~~~~~~~~d~ 178 (286)
||++||+.++||||+.+.+..+..+.+. -+.+.+.....+...+. +.+++||+||+..+... +...++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~-~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSF-LPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTS-CEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCC-cEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 7999999999999998888876443322 12222333333433322 34999999999866543 5667899999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCC--C---CHHHHHHHHHhcC---CCEEEEeC
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQRE--V---PTLDGQALAQSWG---CPFIEASA 249 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~--~---~~~~~~~~~~~~~---~~~~~vSa 249 (286)
+|+|+|+.+.+-.+++..+...+.... ..|++.+-++++|+|+..++.. . ............+ +.++.+|.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 999999996555555555444443322 4679999999999998632211 0 1112222233444 67899998
Q ss_pred CCCCcHHHHHHHHHHHh-hcCCCCcCCCceecCccc
Q psy10504 250 KNKTNVNEMFAEIVREM-NFNPEKDNASFCWCSSCS 284 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i-~~~~~~~~~~~~~~~~c~ 284 (286)
.+ +.+.+.|..|++.+ +..+.-++.....|..|.
T Consensus 160 ~D-~Sly~A~S~Ivq~LiP~~~~le~~L~~~~~~c~ 194 (232)
T PF04670_consen 160 WD-ESLYEAWSKIVQKLIPNLSTLENLLNNFCSSCN 194 (232)
T ss_dssp TS-THHHHHHHHHHHTTSTTHCCCCCCCCHHHCCCT
T ss_pred cC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhcC
Confidence 88 69999999999986 555666666667777775
No 252
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=8.1e-15 Score=144.39 Aligned_cols=113 Identities=17% Similarity=0.106 Sum_probs=82.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCC-----Cc------------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFM-----EK------------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~-----~~------------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+|+|++|+|||||+++|+.. ... .. ..+++.+.....+.+++.. +.+|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~--i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHR--INIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeE--EEEEECCCCc
Confidence 4458999999999999999999741 110 00 1222223444555666555 8999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+|...+...++.+|++++|+|+.++...++...|. .+.. .++|+++++||+|+.
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~-~~~~----~~~p~ivviNK~D~~ 140 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWR-QANR----YEVPRIAFVNKMDKT 140 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence 98888888999999999999999876665443333 2322 278999999999986
No 253
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=2.5e-14 Score=140.90 Aligned_cols=114 Identities=15% Similarity=0.113 Sum_probs=83.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCC-----C------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFM-----E------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+|+|++++|||||+++|+.. ... . ...+.+.+.....+.+++.. +.++||||+.
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~--i~liDTPG~~ 84 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHR--INIIDTPGHV 84 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEE--EEEEcCCCHH
Confidence 5678999999999999999999742 110 0 12233334445566666665 8899999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
+|...+...++.+|++++|+|+.++...++..-|. .+.. .++|+++++||+|+..
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~-~~~~----~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWR-QADK----YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCCCCC
Confidence 98888888999999999999999876554443322 2222 2789999999999873
No 254
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=3.4e-14 Score=127.07 Aligned_cols=161 Identities=16% Similarity=0.174 Sum_probs=103.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEE---------------------CC-eEEEEEEEeCCCc-
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEV---------------------DK-APCVLEILDTAGT- 162 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~---------------------~~-~~~~l~l~DtpG~- 162 (286)
|+++|.+++|||||++++++... ...++.++.+.......+ ++ ..+.+++|||||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764 345556554443332222 22 3356999999997
Q ss_pred ---ccchhhhhhc---ccCccEEEEEEECCCc-------------ccHHHH-------HHH--------HHHHH------
Q psy10504 163 ---EQFASMRDLY---IKNGQGFVVVYSLTNH-------------HTFQDI-------KQM--------KELIT------ 202 (286)
Q Consensus 163 ---~~~~~~~~~~---~~~~d~vilv~d~~~~-------------~s~~~~-------~~~--------~~~i~------ 202 (286)
+++..+...+ +++||++++|+|+.+. ...+++ ..| +..+.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555554 8999999999999731 001111 111 00000
Q ss_pred ---------------------------H--------------------HhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH
Q psy10504 203 ---------------------------R--------------------VKGSERVPILLVANKLDLASHQREVPTLDGQA 235 (286)
Q Consensus 203 ---------------------------~--------------------~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~ 235 (286)
. ......+|+|+|+||.|+.+. .. . ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~-~~--~--~~~ 235 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDA-EN--N--ISK 235 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccCh-HH--H--HHH
Confidence 0 000135799999999997522 11 1 112
Q ss_pred H-HHhcCCCEEEEeCCCCCcHHHHHH-HHHHHhhcCCCC
Q psy10504 236 L-AQSWGCPFIEASAKNKTNVNEMFA-EIVREMNFNPEK 272 (286)
Q Consensus 236 ~-~~~~~~~~~~vSa~~~~gv~~l~~-~i~~~i~~~~~~ 272 (286)
+ .......++.+||+.+.+++++.+ .+.+.+++.+.-
T Consensus 236 l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f 274 (318)
T cd01899 236 LRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDF 274 (318)
T ss_pred HHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCc
Confidence 2 222346799999999999999998 699999876643
No 255
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.59 E-value=2.9e-14 Score=135.66 Aligned_cols=115 Identities=17% Similarity=0.281 Sum_probs=78.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--CcCCC------cc--CCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--GCFME------KY--DPTIE-----------DFYRKEIEVDKAPCVLEILDTAG 161 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~------~~--~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG 161 (286)
+..+|+++|++++|||||+++|+. +.... .. ..+.. ........++...+.+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 557999999999999999999863 21110 00 00111 11222233444455699999999
Q ss_pred cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+.+|.......++.+|++|+|+|+.+....+ ...++..... .++|+++++||+|+.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~----~~~PiivviNKiD~~ 145 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTRL----RDTPIFTFMNKLDRD 145 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh----cCCCEEEEEECcccc
Confidence 9998887777899999999999998853222 2333333222 378999999999985
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.58 E-value=5e-14 Score=107.88 Aligned_cols=105 Identities=23% Similarity=0.270 Sum_probs=74.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch---------hhhhhccc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA---------SMRDLYIK 174 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~---------~~~~~~~~ 174 (286)
+|+++|.+|+|||||+|+|++... ....++++.......+.+++.. +.++||||...-. ......+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKK--FILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEE--EEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceee--EEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998533 4555666666656667788888 6799999954211 11223348
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504 175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 218 (286)
.+|++++|+|++++. -+.....+..+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~-~~~~~~~~~~l~-----~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPI-TEDDKNILRELK-----NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHS-HHHHHHHHHHHH-----TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCC-CHHHHHHHHHHh-----cCCCEEEEEcC
Confidence 899999999988732 233333434442 38899999998
No 257
>KOG1707|consensus
Probab=99.57 E-value=8.6e-15 Score=135.54 Aligned_cols=165 Identities=21% Similarity=0.372 Sum_probs=120.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
..++.++|+++|+.|+|||||+-++....++...++-... .+...+..+... ..++||+...+-+.....-++.||+
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vp--t~ivD~ss~~~~~~~l~~EirkA~v 82 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVP--TSIVDTSSDSDDRLCLRKEIRKADV 82 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCc--eEEEecccccchhHHHHHHHhhcCE
Confidence 3457799999999999999999999998887765544321 111223333444 7889998766655556778899999
Q ss_pred EEEEEECCCcccHHHHHH-HHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCc
Q psy10504 179 FVVVYSLTNHHTFQDIKQ-MKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTN 254 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~-~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~g 254 (286)
+.++|+++++.+++.+.. |+..+....+ -.++|+|+|+||+|..+............+...+. -.+++|||++-.+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 999999999999999875 7777766431 14799999999999984443322223444544444 3579999999999
Q ss_pred HHHHHHHHHHHh
Q psy10504 255 VNEMFAEIVREM 266 (286)
Q Consensus 255 v~~l~~~i~~~i 266 (286)
+.++|-.--+.+
T Consensus 163 ~~e~fYyaqKaV 174 (625)
T KOG1707|consen 163 VSELFYYAQKAV 174 (625)
T ss_pred hHhhhhhhhhee
Confidence 999987655554
No 258
>KOG1191|consensus
Probab=99.57 E-value=1.7e-14 Score=131.32 Aligned_cols=164 Identities=21% Similarity=0.249 Sum_probs=114.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---------hhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---------MRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---------~~~~ 171 (286)
..++|+|+|+||+|||||+|+|... .++...++|+.|.....+.++|.+ +.+.||+|..+-.. -...
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~--v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVP--VRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeE--EEEEeccccccccCChhHHHhHHHHHH
Confidence 5699999999999999999999985 457889999999999999999998 78899999776111 1233
Q ss_pred cccCccEEEEEEECCCcccHHHH--HHHHHHHHHHh-----CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--CC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVK-----GSERVPILLVANKLDLASHQREVPTLDGQALAQSW--GC 242 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~--~~~~~~i~~~~-----~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~ 242 (286)
-+..+|++++|+|+.....-+++ ...+....... .....|++++.||.|+....++............. ..
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVF 424 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCccc
Confidence 46789999999999443332222 22222222110 11247899999999998543333322111111111 13
Q ss_pred C-EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 243 P-FIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 243 ~-~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+ ..++|+++++|++.|.+.+...+..
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 3 4569999999999999999987754
No 259
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.56 E-value=9.2e-14 Score=120.90 Aligned_cols=154 Identities=23% Similarity=0.229 Sum_probs=113.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhcccC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIKN 175 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~~ 175 (286)
.-+|+++|.|++|||||+++|.+... ...|+.|+-......+.+++.+ +|++|+||.-.-.+ ..-...++
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~--IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQ--IQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCce--EEEEcCcccccCcccCCCCcceeeeeecc
Confidence 47899999999999999999999654 6789999989999999999988 89999998543222 23446799
Q ss_pred ccEEEEEEECCCccc-HHHHHHHHH-----------------------------------------HHHHHh--------
Q psy10504 176 GQGFVVVYSLTNHHT-FQDIKQMKE-----------------------------------------LITRVK-------- 205 (286)
Q Consensus 176 ~d~vilv~d~~~~~s-~~~~~~~~~-----------------------------------------~i~~~~-------- 205 (286)
||.+++|+|+..+.. .+.+...+. .+..+.
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 999999999986543 222211111 000100
Q ss_pred ---------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 206 ---------------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 206 ---------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
...-+|.++|.||+|+.+ .+....+.+.. .++.+||+.+.|++++.+.|.+.+.
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~------~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG------LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC------HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 012589999999999972 23444444444 7899999999999999999999764
No 260
>PRK00007 elongation factor G; Reviewed
Probab=99.56 E-value=4.9e-14 Score=138.79 Aligned_cols=113 Identities=17% Similarity=0.166 Sum_probs=82.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--CcCC-----C------------ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--GCFM-----E------------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~-----~------------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+|+|++|+|||||+++|+. +... . ...+.+.+.....+.+.+.. +.++||||+.
T Consensus 9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~--~~liDTPG~~ 86 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHR--INIIDTPGHV 86 (693)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeE--EEEEeCCCcH
Confidence 456899999999999999999974 2110 0 12223334444556666655 8899999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+|.......++.+|++++|+|+..+...++..-|.. +.. .++|.++++||+|+.
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~-~~~----~~~p~iv~vNK~D~~ 140 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQ-ADK----YKVPRIAFVNKMDRT 140 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCCC
Confidence 887777778899999999999988766655444333 222 278999999999986
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.56 E-value=4.9e-15 Score=121.24 Aligned_cols=117 Identities=25% Similarity=0.358 Sum_probs=73.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhh---cccCccEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDL---YIKNGQGF 179 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~---~~~~~d~v 179 (286)
...|+++|+.|+|||+|+.+|..+......... ..... +.. ......+.++|+|||.+.+..... +...+.++
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 467999999999999999999998555444333 22221 112 122223889999999988864333 47889999
Q ss_pred EEEEECCC-cccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCC
Q psy10504 180 VVVYSLTN-HHTFQDIKQMKELITRVK--GSERVPILLVANKLDLAS 223 (286)
Q Consensus 180 ilv~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~ 223 (286)
|+|+|++. .....++.+++..+.... ....+|++|++||.|+..
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 99999974 445555555554444332 235789999999999974
No 262
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.54 E-value=3.2e-13 Score=113.09 Aligned_cols=162 Identities=17% Similarity=0.210 Sum_probs=103.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCcc---CCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------h---hh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY---DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------M---RD 170 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~---~~ 170 (286)
++|+++|.+|+|||||+|++++....... .+.+..........++.. +.++||||-.+... + ..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRR--VNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeE--EEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 37999999999999999999986543222 234444445555666666 88999999654321 1 11
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHHhcCCCE
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQRE-----VPTLDGQALAQSWGCPF 244 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~-----~~~~~~~~~~~~~~~~~ 244 (286)
....+.|++++|+++++ .+-++ ...+..+..... ..-.++++|+||.|....... ......+.+.+..+-.+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~ 156 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRY 156 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeE
Confidence 23467899999999987 33222 233444433221 112588999999997633210 01134455556666566
Q ss_pred EEEe-----CCCCCcHHHHHHHHHHHhhcCC
Q psy10504 245 IEAS-----AKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 245 ~~vS-----a~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+..+ +..+.++++|++.|-+.++++.
T Consensus 157 ~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 157 VAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 5555 4567899999999999988733
No 263
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.54 E-value=1.3e-13 Score=138.66 Aligned_cols=146 Identities=20% Similarity=0.199 Sum_probs=100.7
Q ss_pred cHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeE----------------EEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 116 GKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAP----------------CVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 116 GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~----------------~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
+||||++++.+..+.....+.+++.+... +..+... ..+.|||||||+.|..++...+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 39999999999999888888888665543 3332110 127899999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC------------HHHHHHH----------
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP------------TLDGQAL---------- 236 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~------------~~~~~~~---------- 236 (286)
+++|+|++++...+.... +..+.. .++|+++|+||+|+........ ......+
T Consensus 553 vlLVVDa~~Gi~~qT~e~-I~~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~ 627 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEA-INILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGK 627 (1049)
T ss_pred EEEEEECcccCCHhHHHH-HHHHHH----cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhH
Confidence 999999997533332222 222222 2689999999999963211000 0000111
Q ss_pred -H------------Hhc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 237 -A------------QSW--GCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 237 -~------------~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
. +.+ .++++++||++|+|+++|+++|....
T Consensus 628 L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 628 LYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 1 111 26899999999999999999887543
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.2e-13 Score=121.06 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=114.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----hhhh---cccCcc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----MRDL---YIKNGQ 177 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----~~~~---~~~~~d 177 (286)
-|.++|-|++|||||++.+...+. ..+|+.|+-...-..+..++.. .|.+-|.||..+-.+ +-.. .+..|.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~-sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGE-SFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCC-cEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 468999999999999999998544 7889888876666666653322 288999999554322 2233 346689
Q ss_pred EEEEEEECCCccc---HHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEE-EEeCCCC
Q psy10504 178 GFVVVYSLTNHHT---FQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI-EASAKNK 252 (286)
Q Consensus 178 ~vilv~d~~~~~s---~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~vSa~~~ 252 (286)
+++.|+|++..+. .++......++..+. ...++|.+||+||+|+.. ..+........+.+..+.... .+||.++
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~-~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL-DEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc-CHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 9999999986543 566666666666653 445899999999999762 222222333444444443322 2999999
Q ss_pred CcHHHHHHHHHHHhhcCC
Q psy10504 253 TNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~ 270 (286)
+|++++...+.+.+.+.+
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 999999999999887664
No 265
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.2e-14 Score=125.72 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=98.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~ 149 (286)
..+++++++||+++|||||+-+|+.. .+.. .+.+- +.......+..
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGv--Ti~~~~~~fet 82 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGV--TIDVAHSKFET 82 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcce--EEEEEEEEeec
Confidence 46799999999999999999888751 1111 00111 11122233344
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
..+.++++|+|||.+|-..+-.....||+.|||+|+++++ ++....+..+.+.-.+...-..+||++||+|..+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~--- 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS--- 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc---
Confidence 4456999999999999998999999999999999999873 2211222222222212222346789999999983
Q ss_pred CCCHHHH-------HHHHHhcC-----CCEEEEeCCCCCcHHH
Q psy10504 227 EVPTLDG-------QALAQSWG-----CPFIEASAKNKTNVNE 257 (286)
Q Consensus 227 ~~~~~~~-------~~~~~~~~-----~~~~~vSa~~~~gv~~ 257 (286)
+++... ..+.+..| ++|++|||..|+|+.+
T Consensus 160 -wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 -WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 222222 22444444 5699999999999865
No 266
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.53 E-value=1.1e-13 Score=118.17 Aligned_cols=163 Identities=17% Similarity=0.219 Sum_probs=108.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CC-CccceEEEEEEECCeEEEEEEEeCCCccc-------chhhhhhc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DP-TIEDFYRKEIEVDKAPCVLEILDTAGTEQ-------FASMRDLY 172 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~-t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~~~~~~~ 172 (286)
..+++|+++|..|+|||||+|+|+.+....-. .+ ++.....-...+++.. +.+||+||-++ ++.....+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~--l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGEN--LVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccc--eEEecCCCcccchhhhHHHHHHHHHH
Confidence 35689999999999999999999975432211 11 2211111122344444 89999999654 66677788
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-------CCCHH-------HHHHHHH
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-------EVPTL-------DGQALAQ 238 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~-------~~~~~~~ 238 (286)
+...|.++++.++.|+.---+...|.+.+... -+.|+++++|.+|.....+ ..+.. +.+...+
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~---~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILG---LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhc---cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 89999999999999986444444444444432 2489999999999863211 11111 1111222
Q ss_pred hcC--CCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 239 SWG--CPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 239 ~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
... -|++.+|...+.|++++...++..++..
T Consensus 192 ~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQEVKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 222 4788899999999999999999988743
No 267
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.53 E-value=1.6e-13 Score=120.79 Aligned_cols=142 Identities=21% Similarity=0.280 Sum_probs=88.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCc----------cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch------
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK----------YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA------ 166 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~----------~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~------ 166 (286)
.++|+++|++|+|||||+|+|++..+... ..+|+. ......+..++..+.+++|||||..++.
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 58999999999999999999999766443 223322 3334455667878889999999943221
Q ss_pred --------------------hhhhhcccC--ccEEEEEEECCCcccHHHHHHH-HHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 167 --------------------SMRDLYIKN--GQGFVVVYSLTNHHTFQDIKQM-KELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 167 --------------------~~~~~~~~~--~d~vilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
..+...+.+ +|+++++++.+... +..+ +..+.... .++|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~----l~~~D~~~lk~l~--~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG----LKPLDIEFMKRLS--KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC----CCHHHHHHHHHHh--ccCCEEEEEECCCcCC
Confidence 112133433 67777777766422 1222 22222222 2689999999999862
Q ss_pred C-CCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 224 H-QREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 224 ~-~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
. +..............++++++......
T Consensus 158 ~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 158 PEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 1 122233345556667788888766543
No 268
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.50 E-value=7.9e-13 Score=121.69 Aligned_cols=162 Identities=17% Similarity=0.194 Sum_probs=104.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEE---------------------C-CeEEEEEEEeCCC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEV---------------------D-KAPCVLEILDTAG 161 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~---------------------~-~~~~~l~l~DtpG 161 (286)
++|+++|.||+|||||+++|.+.... ..++.++.+.......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999987653 45666654444433221 1 1235689999999
Q ss_pred cc----cchhhhhhc---ccCccEEEEEEECCCc-------------ccHHH-------HHHH--------HHHHH----
Q psy10504 162 TE----QFASMRDLY---IKNGQGFVVVYSLTNH-------------HTFQD-------IKQM--------KELIT---- 202 (286)
Q Consensus 162 ~~----~~~~~~~~~---~~~~d~vilv~d~~~~-------------~s~~~-------~~~~--------~~~i~---- 202 (286)
.. +...+...+ ++++|++++|+|+.+. .-.++ +..| +..+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~ 161 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ 161 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 43 344455555 7899999999999721 00110 0000 00000
Q ss_pred -------------------------H----H--------------------hCCCCCcEEEEEeCCCCCCCCCCCCHHHH
Q psy10504 203 -------------------------R----V--------------------KGSERVPILLVANKLDLASHQREVPTLDG 233 (286)
Q Consensus 203 -------------------------~----~--------------------~~~~~~piivv~nK~Dl~~~~~~~~~~~~ 233 (286)
. . .....+|+++|+||.|...... ..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~-----~l 236 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEE-----NI 236 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchH-----HH
Confidence 0 0 0113589999999999752111 12
Q ss_pred HHHHHhcCCCEEEEeCCCCCcHHH-HHHHHHHHhhcCCC
Q psy10504 234 QALAQSWGCPFIEASAKNKTNVNE-MFAEIVREMNFNPE 271 (286)
Q Consensus 234 ~~~~~~~~~~~~~vSa~~~~gv~~-l~~~i~~~i~~~~~ 271 (286)
..+.+..+..++.+||+.+.++++ +.+.+.+.+++.+.
T Consensus 237 ~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~ 275 (396)
T PRK09602 237 ERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSD 275 (396)
T ss_pred HHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCc
Confidence 222222346789999999999999 89999998887663
No 269
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=1.4e-13 Score=119.42 Aligned_cols=173 Identities=17% Similarity=0.180 Sum_probs=113.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCCCcc--------------c-----eEEE--EEEEC----CeEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDPTIE--------------D-----FYRK--EIEVD----KAPCV 153 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~t~~--------------~-----~~~~--~~~~~----~~~~~ 153 (286)
..+++|.++||.++|||||..+|.+-. +.+.....+. + .+.. ..... ....+
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 467999999999999999999998721 1111100000 0 0000 00000 22346
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHH
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLD 232 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~ 232 (286)
+.|+|.|||+-..+.+-....-.|+++||++++.+----+.++-+..+.-. .-..+|+|-||+|+.+.++. ....+
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 899999999998888888888899999999999843222223222333221 13578999999999843332 12233
Q ss_pred HHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 233 GQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 233 ~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
+..|.+- .+.|++++||..+.|+|.+++.|.+.++......+.+-
T Consensus 165 Ik~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~~~p 212 (415)
T COG5257 165 IKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLDKPP 212 (415)
T ss_pred HHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCCCCc
Confidence 3333332 23799999999999999999999999998777665554
No 270
>PRK12740 elongation factor G; Reviewed
Probab=99.50 E-value=2.6e-13 Score=133.63 Aligned_cols=106 Identities=21% Similarity=0.216 Sum_probs=74.2
Q ss_pred ECCCCCcHHHHHHHHhcC--cCCC--cc---------------CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh
Q psy10504 110 LGSGGVGKSALTVQFVSG--CFME--KY---------------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD 170 (286)
Q Consensus 110 vG~~~~GKTSLi~~l~~~--~~~~--~~---------------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~ 170 (286)
+|++|+|||||+++|... .... .. .+.+.......+.+++. .+.+|||||+.+|...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~--~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGH--KINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCE--EEEEEECCCcHHHHHHHH
Confidence 699999999999999642 1110 00 01111222234455554 489999999999888888
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+++.+|++++|+|+++....+....|. .+.. .++|+++|+||+|+.
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence 8999999999999999876655543332 2222 278999999999986
No 271
>KOG0090|consensus
Probab=99.49 E-value=4.2e-13 Score=110.26 Aligned_cols=157 Identities=18% Similarity=0.254 Sum_probs=104.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc---CccEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK---NGQGFVV 181 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~---~~d~vil 181 (286)
..|+++|+.++|||+|+-+|..+.+....+.. ......+.+.+.. .+++|.|||.+.+.....++. .+.++||
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSi--epn~a~~r~gs~~--~~LVD~PGH~rlR~kl~e~~~~~~~akaiVF 114 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSI--EPNEATYRLGSEN--VTLVDLPGHSRLRRKLLEYLKHNYSAKAIVF 114 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeee--ccceeeEeecCcc--eEEEeCCCcHHHHHHHHHHccccccceeEEE
Confidence 46999999999999999999998544433222 2334555555555 789999999988876666666 7899999
Q ss_pred EEECCC-cccHHHHHHHHHHHHHHh--CCCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHH---------------
Q psy10504 182 VYSLTN-HHTFQDIKQMKELITRVK--GSERVPILLVANKLDLASHQRE-----VPTLDGQALAQ--------------- 238 (286)
Q Consensus 182 v~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piivv~nK~Dl~~~~~~-----~~~~~~~~~~~--------------- 238 (286)
|+|+.. ..-..++..++-.+.... ....+|+++++||.|+.-+... .-+.++..+.+
T Consensus 115 VVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~ 194 (238)
T KOG0090|consen 115 VVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAK 194 (238)
T ss_pred EEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Confidence 999764 444455555444443322 3447899999999998633211 00001111100
Q ss_pred -----------------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 239 -----------------SWGCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 239 -----------------~~~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
...+.|.++|++++ +++++-+||.+.+
T Consensus 195 ~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 195 DFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 01245789999998 9999999997753
No 272
>KOG1144|consensus
Probab=99.48 E-value=2.4e-13 Score=128.58 Aligned_cols=162 Identities=18% Similarity=0.204 Sum_probs=116.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECC-------------e----EEEEEEEeCCCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDK-------------A----PCVLEILDTAGTE 163 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-------------~----~~~l~l~DtpG~~ 163 (286)
..+.+-|||+||.++|||-|+..+.+..+.....+++++.+..++.... . --.+.++|||||+
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 4567889999999999999999999988888888888766655543211 0 1137789999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH------------
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL------------ 231 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~------------ 231 (286)
.|..++.++...||.+|+|+|+..+-..+.+.. +..++. .+.|+||++||+|...........
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~ 626 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD 626 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHH-HHHHHh----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence 999999999999999999999987544444333 222332 378999999999976432111000
Q ss_pred HHHHH-----------HHh-c-----------C--CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 232 DGQAL-----------AQS-W-----------G--CPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 232 ~~~~~-----------~~~-~-----------~--~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
....| ++. + + +.++++||.+|+|+.+|+-+|++...
T Consensus 627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 00111 110 0 1 35789999999999999999988654
No 273
>KOG0461|consensus
Probab=99.45 E-value=2.4e-12 Score=112.67 Aligned_cols=170 Identities=14% Similarity=0.143 Sum_probs=111.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC----cCCCccCCCcc----ceEEEEEE-------ECCeEEEEEEEeCCCcccchh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG----CFMEKYDPTIE----DFYRKEIE-------VDKAPCVLEILDTAGTEQFAS 167 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~----~~~~~~~~t~~----~~~~~~~~-------~~~~~~~l~l~DtpG~~~~~~ 167 (286)
..+++.++||.++|||||.+++..- .|......+.+ |..-..+. ..+.+.+++++|+|||...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 4589999999999999999999762 22222222211 11111111 235667789999999976655
Q ss_pred hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHH-HHHHH---hc--
Q psy10504 168 MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDG-QALAQ---SW-- 240 (286)
Q Consensus 168 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~-~~~~~---~~-- 240 (286)
......+-.|..++|+|+..+...+..+.++..-.- -...+||+||+|...+. +....++. ..+.+ ..
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~-----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f 160 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL-----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF 160 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhhh-----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence 555556667999999999988776666554332221 23568888999875332 22111111 11111 11
Q ss_pred --CCCEEEEeCCCC----CcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 241 --GCPFIEASAKNK----TNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 241 --~~~~~~vSa~~~----~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
+.|++++||+.| +++.++.+.|-..+-+.......++
T Consensus 161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~gpf 203 (522)
T KOG0461|consen 161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEGPF 203 (522)
T ss_pred CCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCCCe
Confidence 178999999999 8999999999999887777666665
No 274
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.43 E-value=2.5e-12 Score=127.50 Aligned_cols=115 Identities=17% Similarity=0.211 Sum_probs=79.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCC---------------ccceE--EEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPT---------------IEDFY--RKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t---------------~~~~~--~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+.-+|+++||.++|||||+.+|+.. .......+. +.... ...+..++..+.+.|+|||||.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4568999999999999999999852 111111110 00111 1122334456678999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+|.......++.+|++++|+|+..+...+....|...... ++|.|+++||+|+.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-----RVKPVLFINKVDRL 152 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-----CCCeEEEEECchhh
Confidence 9988888899999999999999887554444434332222 57889999999986
No 275
>PRK09866 hypothetical protein; Provisional
Probab=99.42 E-value=9.5e-12 Score=117.96 Aligned_cols=109 Identities=20% Similarity=0.238 Sum_probs=72.4
Q ss_pred EEEEEeCCCcccc-----hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504 153 VLEILDTAGTEQF-----ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE 227 (286)
Q Consensus 153 ~l~l~DtpG~~~~-----~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~ 227 (286)
++.|+||||.... .......+..+|++++|+|+++..+..+. .....+.... .+.|+++|+||+|+.+...
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~--K~~PVILVVNKIDl~dree- 306 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVG--QSVPLYVLVNKFDQQDRNS- 306 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcC--CCCCEEEEEEcccCCCccc-
Confidence 4789999996532 22344578999999999999885544442 2334444321 1359999999999862222
Q ss_pred CCHHHHHHHHH----hc---CCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 228 VPTLDGQALAQ----SW---GCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 228 ~~~~~~~~~~~----~~---~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
........+.. .. ...++++||++|.|++++++.|...
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 12333333322 11 2468999999999999999999884
No 276
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.41 E-value=1.1e-12 Score=129.67 Aligned_cols=116 Identities=20% Similarity=0.219 Sum_probs=80.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc---------------CCCcc--CC-Ccc-ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC---------------FMEKY--DP-TIE-DFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~---------------~~~~~--~~-t~~-~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|+.++|||||+++|+... +...+ .+ |+. ......+..++..+.+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 45799999999999999999997521 10000 01 111 1111223356667779999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
+|.......++.+|++++|+|+.++...+....|... .. .++|.++++||+|...
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~-~~----~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQA-LK----ENVKPVLFINKVDRLI 152 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHH-HH----cCCCEEEEEEChhccc
Confidence 9988888899999999999999886544443333222 12 2678899999999863
No 277
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=4.9e-12 Score=114.39 Aligned_cols=166 Identities=15% Similarity=0.091 Sum_probs=114.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC----CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFM----EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
-|+..|+..+|||||+..+.+..-. ....+++.|...+....++. .+.|+|.|||+++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~--~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDG--VMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCC--ceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 3788999999999999999884322 22344444555555555555 48999999999998888888889999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS---WGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l 258 (286)
|+|++++-..+..+. +..+.. ..-...++|+||+|..+..+. .+....+... ...+++.+|+++|+|+++|
T Consensus 80 vV~~deGl~~qtgEh-L~iLdl---lgi~~giivltk~D~~d~~r~--e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~L 153 (447)
T COG3276 80 VVAADEGLMAQTGEH-LLILDL---LGIKNGIIVLTKADRVDEARI--EQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred EEeCccCcchhhHHH-HHHHHh---cCCCceEEEEeccccccHHHH--HHHHHHHHhhcccccccccccccccCCCHHHH
Confidence 999987654443332 112221 113356999999999743321 1222222222 2367899999999999999
Q ss_pred HHHHHHHhhcCCCCcCCCcee
Q psy10504 259 FAEIVREMNFNPEKDNASFCW 279 (286)
Q Consensus 259 ~~~i~~~i~~~~~~~~~~~~~ 279 (286)
.+.|.+.........+.+++.
T Consensus 154 k~~l~~L~~~~e~d~~~~fri 174 (447)
T COG3276 154 KNELIDLLEEIERDEQKPFRI 174 (447)
T ss_pred HHHHHHhhhhhhhccCCceEE
Confidence 999999886555555555543
No 278
>PRK13768 GTPase; Provisional
Probab=99.35 E-value=4.3e-12 Score=110.46 Aligned_cols=113 Identities=20% Similarity=0.209 Sum_probs=71.3
Q ss_pred EEEEEeCCCcccch---hhhhhcc---cC--ccEEEEEEECCCcccHHHHHH--HHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 153 VLEILDTAGTEQFA---SMRDLYI---KN--GQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 153 ~l~l~DtpG~~~~~---~~~~~~~---~~--~d~vilv~d~~~~~s~~~~~~--~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+.+||+||+.+.. ..+..++ .. ++++++++|++......+... |+....... .++|+++|+||+|+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLL 175 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhc
Confidence 47899999987643 3332222 22 899999999977554444332 222222111 378999999999987
Q ss_pred CCCCCCCHHH-HH------------------------HHHHhcC--CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 223 SHQREVPTLD-GQ------------------------ALAQSWG--CPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 223 ~~~~~~~~~~-~~------------------------~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
+......... .. ...+..+ .+++++||+++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 3321100000 00 0112223 58899999999999999999988774
No 279
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=8.4e-12 Score=107.27 Aligned_cols=174 Identities=18% Similarity=0.239 Sum_probs=112.8
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC---c-------CCC-ccCC----CccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG---C-------FME-KYDP----TIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~---~-------~~~-~~~~----t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
...+++|..+||.++|||||..++..- . +.. +..| ........++.+.-...++-.+|+|||.+|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 346799999999999999998877651 0 000 0001 011222344444444455888999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSWG- 241 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~- 241 (286)
-..........|+.|+|++++|+.-.+. .+.+.-.+. -++| ++++.||+|+.++..- .-..+...+...++
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpmPqT----rEHiLlarq-vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f 163 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPMPQT----REHILLARQ-VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF 163 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCCCcc----hhhhhhhhh-cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence 9888888889999999999999663332 222222111 2665 5566799999843322 22334455555665
Q ss_pred ----CCEEEEeCCCC--------CcHHHHHHHHHHHhhcCCCCcCCCcee
Q psy10504 242 ----CPFIEASAKNK--------TNVNEMFAEIVREMNFNPEKDNASFCW 279 (286)
Q Consensus 242 ----~~~~~vSa~~~--------~gv~~l~~~i~~~i~~~~~~~~~~~~~ 279 (286)
.|++.-||+.. .-+.+|.+++-.+++........++..
T Consensus 164 ~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~~dkPflm 213 (394)
T COG0050 164 PGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERDIDKPFLM 213 (394)
T ss_pred CCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCcccccccc
Confidence 56777777642 236788888888888877777766643
No 280
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.33 E-value=9e-12 Score=125.07 Aligned_cols=117 Identities=18% Similarity=0.229 Sum_probs=82.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCc---------------cceEEEEEEE--------------CC
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTI---------------EDFYRKEIEV--------------DK 149 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~---------------~~~~~~~~~~--------------~~ 149 (286)
+.+..+|+|+||.++|||||+++|+... ......+++ .......+.+ ++
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 3355689999999999999999998632 111111110 0111112222 12
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
..+.++++|||||.+|.......++.+|++|+|+|+.++...+...-|...... ++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~-----~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE-----RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC-----CCCEEEEEECCccc
Confidence 355689999999999998888889999999999999988766655544443333 78999999999987
No 281
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.33 E-value=9.1e-12 Score=109.51 Aligned_cols=149 Identities=22% Similarity=0.193 Sum_probs=97.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC----------Ccc--CCCcc----------------------ceEEEEEEEC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM----------EKY--DPTIE----------------------DFYRKEIEVD 148 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~----------~~~--~~t~~----------------------~~~~~~~~~~ 148 (286)
..++.+.+|+.+-|||||+-+|+.+.-. ... .++.+ |.-...+..
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT- 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST- 83 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-
Confidence 4589999999999999999999873210 011 11211 111111222
Q ss_pred CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC
Q psy10504 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV 228 (286)
Q Consensus 149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~ 228 (286)
.+.+|.+-|||||++|...+......||++|+++|+..+..-+.-+ ...+....+ =..+++++||+||.+-.++.
T Consensus 84 -~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrR--Hs~I~sLLG--IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 84 -EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRR--HSFIASLLG--IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred -ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHH--HHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence 2334889999999999999999999999999999997654222211 122222222 24678889999998433221
Q ss_pred ---CHHHHHHHHHhcC---CCEEEEeCCCCCcHHH
Q psy10504 229 ---PTLDGQALAQSWG---CPFIEASAKNKTNVNE 257 (286)
Q Consensus 229 ---~~~~~~~~~~~~~---~~~~~vSa~~~~gv~~ 257 (286)
-..+...++..++ ..++++||..|+|+-.
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 2233455677777 4689999999999843
No 282
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.32 E-value=7.8e-12 Score=94.28 Aligned_cols=137 Identities=17% Similarity=0.167 Sum_probs=92.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhcccCccEEEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~~~d~vil 181 (286)
|++++|..|+|||||.+++.+....... +.-+.+.+.. .+||||.- .+..-......++|++++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykK--------TQAve~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~ 70 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKK--------TQAVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVIIY 70 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcc--------cceeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceeee
Confidence 7899999999999999999886433222 1223333332 48999942 222223334678999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~ 260 (286)
|-.++++++.-.. .+.. ....|+|-|++|.|+.+ .. +....+.+..+.| -++|++|+.+..|++++++
T Consensus 71 v~~and~~s~f~p-----~f~~---~~~k~vIgvVTK~DLae-d~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 71 VHAANDPESRFPP-----GFLD---IGVKKVIGVVTKADLAE-DA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eecccCccccCCc-----cccc---ccccceEEEEecccccc-hH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 9999998643221 1111 12467999999999983 22 2334444555556 6799999999999999999
Q ss_pred HHHHH
Q psy10504 261 EIVRE 265 (286)
Q Consensus 261 ~i~~~ 265 (286)
.+...
T Consensus 140 ~L~~~ 144 (148)
T COG4917 140 YLASL 144 (148)
T ss_pred HHHhh
Confidence 88653
No 283
>KOG1490|consensus
Probab=99.31 E-value=9.5e-12 Score=113.69 Aligned_cols=162 Identities=13% Similarity=0.122 Sum_probs=115.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch----hhh-----hh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA----SMR-----DL 171 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~----~~~-----~~ 171 (286)
+....++++|-|++|||||++.+..... +..|+.|+......++.+.... ++++||||.-+.- ... ..
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlr--wQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLR--WQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheee--eeecCCccccCcchhhhhHHHHHHHHH
Confidence 3557899999999999999999887654 6778888776666666666555 8899999944211 111 11
Q ss_pred cccCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcCCCEEE
Q psy10504 172 YIKNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWGCPFIE 246 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~ 246 (286)
..+-..+|++++|++. +-|.+.-..+++.+..... +.|+|+|+||+|+.. ....+.+ ..+.+....++++++
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa--NK~~IlvlNK~D~m~-~edL~~~~~~ll~~~~~~~~v~v~~ 320 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA--NKVTILVLNKIDAMR-PEDLDQKNQELLQTIIDDGNVKVVQ 320 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc--CCceEEEeecccccC-ccccCHHHHHHHHHHHhccCceEEE
Confidence 1233457999999987 4566666667777766443 899999999999873 3333333 234444455589999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhc
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+|+.+.+|+-++....++.+..
T Consensus 321 tS~~~eegVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 321 TSCVQEEGVMDVRTTACEALLA 342 (620)
T ss_pred ecccchhceeeHHHHHHHHHHH
Confidence 9999999998887777776554
No 284
>KOG0458|consensus
Probab=99.30 E-value=2.6e-11 Score=112.70 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=97.4
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEE
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIE 146 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~ 146 (286)
..+...+.++++||.++|||||+-+++.. .+.. ...+-+.+. ....
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v--~~~~ 249 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDV--KTTW 249 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEe--eeEE
Confidence 34446789999999999999998888651 1100 011111122 2233
Q ss_pred ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
++.....++++|+|||..|-.........+|+.+||+|++-.. .|+.-.+..+...-.+...-..+||++||+|+.+
T Consensus 250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~ 329 (603)
T KOG0458|consen 250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS 329 (603)
T ss_pred EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence 4455556999999999999998888999999999999998632 2221122222111111122447899999999972
Q ss_pred CCCCCCHHH----HHHHH-HhcC-----CCEEEEeCCCCCcHHHH
Q psy10504 224 HQREVPTLD----GQALA-QSWG-----CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 224 ~~~~~~~~~----~~~~~-~~~~-----~~~~~vSa~~~~gv~~l 258 (286)
-.+...++ ...+. +..| +.+++||+.+|+|+-..
T Consensus 330 -Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 330 -WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 11111111 11222 3344 47999999999998543
No 285
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.29 E-value=4.1e-11 Score=107.61 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=84.5
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
+.+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..+.......++|+++++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 4589999999999999999999999999999999974 345555555666655444468999999999996
Q ss_pred CCCC--------------C-CCCHHHHHHHHHh-----c-----CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 222 ASHQ--------------R-EVPTLDGQALAQS-----W-----GCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 222 ~~~~--------------~-~~~~~~~~~~~~~-----~-----~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
.... . ..+......+... . .+-++.++|.+..+++.+|+.+.+.+...
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 4110 0 1122222222211 1 13356789999999999999998887654
No 286
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.9e-11 Score=108.22 Aligned_cols=115 Identities=23% Similarity=0.329 Sum_probs=80.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--CcCC------Cc--cCCCcc-----------ceEEEEEEECCeEEEEEEEeCCC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--GCFM------EK--YDPTIE-----------DFYRKEIEVDKAPCVLEILDTAG 161 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--~~~~------~~--~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG 161 (286)
+.-..+|+-||++|||||..+|+- +.+. .. ...+.. ...+...+++...+.+.+.||||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence 344678999999999999988864 2111 10 011111 22333445555556699999999
Q ss_pred cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
|++|..-.=+.+..+|.+++|+|+..+...+..+-. ...+ ..++||+-.+||.|..
T Consensus 91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLf--eVcr---lR~iPI~TFiNKlDR~ 146 (528)
T COG4108 91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLF--EVCR---LRDIPIFTFINKLDRE 146 (528)
T ss_pred ccccchhHHHHHHhhheeeEEEecccCccHHHHHHH--HHHh---hcCCceEEEeeccccc
Confidence 999998877888899999999999987655554421 2222 3489999999999975
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.28 E-value=1.7e-11 Score=122.97 Aligned_cols=115 Identities=22% Similarity=0.248 Sum_probs=79.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc---------------ceEEEEEEEC--------CeEEEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE---------------DFYRKEIEVD--------KAPCVLEIL 157 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~---------------~~~~~~~~~~--------~~~~~l~l~ 157 (286)
+..+|+++|+.++|||||+++|+.. .......+++. +.....+.+. +....+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 4458999999999999999999862 11111111100 1001122222 224568999
Q ss_pred eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
|||||.+|.......++.+|++|+|+|+.++...+...-| ..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence 9999999988888889999999999999987655544333 22222 278999999999986
No 288
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.27 E-value=7e-11 Score=102.32 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=77.5
Q ss_pred ccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy10504 163 EQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241 (286)
Q Consensus 163 ~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 241 (286)
++|..+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+. ..+.........+. ..+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~-~~~~~~~~~~~~~~-~~g 97 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLL-DDEDMEKEQLDIYR-NIG 97 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccC-CCHHHHHHHHHHHH-HCC
Confidence 578888899999999999999999987 89999998876543 379999999999996 23333223334443 478
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 242 CPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 242 ~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
.+++++||++|.|++++|+.+..
T Consensus 98 ~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 98 YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred CeEEEEecCCchhHHHHHhhhcC
Confidence 89999999999999999998764
No 289
>PTZ00258 GTP-binding protein; Provisional
Probab=99.25 E-value=1.3e-10 Score=106.26 Aligned_cols=85 Identities=21% Similarity=0.169 Sum_probs=62.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQF 165 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~ 165 (286)
...++|+++|.||+|||||+|+|.+... ...++.|+.+.....+.+.+.. .++.++||||...-
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 4668999999999999999999987544 5667778777777666655332 24889999995421
Q ss_pred h----hhh---hhcccCccEEEEEEECC
Q psy10504 166 A----SMR---DLYIKNGQGFVVVYSLT 186 (286)
Q Consensus 166 ~----~~~---~~~~~~~d~vilv~d~~ 186 (286)
. .+. ...++.+|++++|+|+.
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 122 22457799999999984
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.24 E-value=2e-10 Score=96.38 Aligned_cols=101 Identities=18% Similarity=0.133 Sum_probs=63.3
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE--EEEEeCCCCCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI--LLVANKLDLASHQREVP 229 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi--ivv~nK~Dl~~~~~~~~ 229 (286)
....++++.|..--..... .-+|.++.|+|+.+...... .+. +++.. ++++||+|+.+. ....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~-~~~~ 156 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPM-VGAD 156 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhcccc-cccc
Confidence 3466788888322111211 12678999999987655321 111 12333 899999999732 1112
Q ss_pred HHHHHHHHH--hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 230 TLDGQALAQ--SWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 230 ~~~~~~~~~--~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
........+ ..+.+++++||++|+|++++|++|.++++
T Consensus 157 ~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 157 LGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 222233333 34589999999999999999999998764
No 291
>KOG1532|consensus
Probab=99.24 E-value=7e-11 Score=100.80 Aligned_cols=167 Identities=15% Similarity=0.163 Sum_probs=92.0
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc------------------ceEEE-------EEEE--------
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE------------------DFYRK-------EIEV-------- 147 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~------------------~~~~~-------~~~~-------- 147 (286)
..+++-|+++|-.|+|||||+++|.........+|-.. +...+ .+..
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsL 95 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSL 95 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhH
Confidence 44667899999999999999999987433222222111 00000 0000
Q ss_pred ----------------CCeEEEEEEEeCCCcccchhhhh------hcccC--ccEEEEEEECCCcccHHH-HHHHHHHHH
Q psy10504 148 ----------------DKAPCVLEILDTAGTEQFASMRD------LYIKN--GQGFVVVYSLTNHHTFQD-IKQMKELIT 202 (286)
Q Consensus 148 ----------------~~~~~~l~l~DtpG~~~~~~~~~------~~~~~--~d~vilv~d~~~~~s~~~-~~~~~~~i~ 202 (286)
....+...++|||||.+-..... ..+.. .-++++++|.....+... +..++-...
T Consensus 96 NLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcS 175 (366)
T KOG1532|consen 96 NLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACS 175 (366)
T ss_pred HHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHH
Confidence 11224578999999875332221 12222 235666666543221111 112111111
Q ss_pred HHhCCCCCcEEEEEeCCCCCCCCCCCC----HHHHH--------------------HHHHh-cCCCEEEEeCCCCCcHHH
Q psy10504 203 RVKGSERVPILLVANKLDLASHQREVP----TLDGQ--------------------ALAQS-WGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 203 ~~~~~~~~piivv~nK~Dl~~~~~~~~----~~~~~--------------------~~~~~-~~~~~~~vSa~~~~gv~~ 257 (286)
- ...-..|.|+|.||+|+.+..-... .+.-+ .+.+- .++..+.||+.+|.|.++
T Consensus 176 i-lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~dd 254 (366)
T KOG1532|consen 176 I-LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDD 254 (366)
T ss_pred H-HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHH
Confidence 1 1223789999999999974431110 00000 01111 136789999999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
+|..+-+.+.+
T Consensus 255 f~~av~~~vdE 265 (366)
T KOG1532|consen 255 FFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 292
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.24 E-value=1.7e-10 Score=98.81 Aligned_cols=139 Identities=14% Similarity=0.150 Sum_probs=81.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
.+..|+++|++|+|||||++.+.+..-........+. .. .....+. .+.++||||.. ..+ ....+.+|+++++
T Consensus 38 ~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~-i~~~~~~--~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 38 PPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-IT-VVTGKKR--RLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EE-EEecCCc--eEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 4577999999999999999999874221111111111 11 1122333 48899999864 222 2346889999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCCCCCCH--HHHHH-HHHh--cCCCEEEEeCCCCC
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQREVPT--LDGQA-LAQS--WGCPFIEASAKNKT 253 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~~~~~~--~~~~~-~~~~--~~~~~~~vSa~~~~ 253 (286)
+|++.+...+.. ..+..+.. .++|. ++|+||+|+......... ..... +... .+.+++.+||++.-
T Consensus 111 iDa~~~~~~~~~-~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 111 IDASFGFEMETF-EFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EecCcCCCHHHH-HHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 999876544332 23333332 26775 459999998632211111 11111 2211 23789999999863
No 293
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.23 E-value=2.4e-10 Score=103.59 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=83.5
Q ss_pred EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc----------ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+.+||++|+...+..|..++.+++++++|+|+++. ..+++....+..+.......++|+++++||.|+.
T Consensus 185 ~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~ 264 (342)
T smart00275 185 FFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLF 264 (342)
T ss_pred EEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhH
Confidence 488999999999999999999999999999999973 3455555566666654555689999999999974
Q ss_pred CCC--------------CCCCHHHHHHHHH-----hc------CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 223 SHQ--------------REVPTLDGQALAQ-----SW------GCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 223 ~~~--------------~~~~~~~~~~~~~-----~~------~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
... ...+......+.. .. .+-++.++|.+..++..+|+.+.+.+...
T Consensus 265 ~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 265 EEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 110 0012222222211 11 13356788999999999999888877653
No 294
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=9e-11 Score=114.26 Aligned_cols=118 Identities=17% Similarity=0.113 Sum_probs=88.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCC-ccCC---Ccc-------------ceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME-KYDP---TIE-------------DFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~-~~~~---t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
.+.-+|.|+||.++|||||..+++-. .... .... +.. ......+.+.+ .+.++++|||||
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-DYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC-ceEEEEeCCCCc
Confidence 35568999999999999999999752 1111 0000 011 11223344444 455999999999
Q ss_pred ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
-+|..-..+.++.+|++++|+|+.++...+.-.-|...... ++|.++++||+|....+
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~-----~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY-----GVPRILFVNKMDRLGAD 144 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc-----CCCeEEEEECccccccC
Confidence 99999999999999999999999998877777777666555 89999999999987443
No 295
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.22 E-value=9.1e-11 Score=90.12 Aligned_cols=114 Identities=25% Similarity=0.258 Sum_probs=82.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccC-CCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYD-PTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
+||+++|+.|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v~ 54 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQCW 54 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEEE
Confidence 489999999999999999998877765443 3332 3444566788899999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 256 (286)
+.++..+++.+ |...+... ...+.|.++++||.|+.+. ........ .+++++|++++.|+.
T Consensus 55 ~~~~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~-~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 55 RVDDRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEE-RQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred EccCHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhh-CcCCHHHH--------HHHHHHhCCCcchhh
Confidence 99999888766 66555542 3357899999999998522 23333222 234568899999874
No 296
>KOG0705|consensus
Probab=99.21 E-value=2.4e-11 Score=111.98 Aligned_cols=182 Identities=21% Similarity=0.369 Sum_probs=140.1
Q ss_pred eeccCCCCCCCCCCCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 84 FLVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
..+...+.+++++..+....++|+.|+|..++|||+|+++++.+.++....+..+.+ .+.+..++....+.+.|.+|+.
T Consensus 10 ~~~~dafvnsqewtlsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~-kkE~vv~gqs~lLlirdeg~~~ 88 (749)
T KOG0705|consen 10 DSIEDAFVNSQEWTLSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRF-KKEVVVDGQSHLLLIRDEGGHP 88 (749)
T ss_pred hhHHHhhccccceeeecccchhheeeeecccCCceeeeeeeccceeccccCCcCccc-eeeEEeeccceEeeeecccCCc
Confidence 334555667777777777889999999999999999999999999988887776655 4445556666667788888843
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHH-HHhcC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH-QREVPTLDGQAL-AQSWG 241 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~-~~~~~ 241 (286)
...|....|++|+||...|..+++.+..+...+..+.....+|+++++++.-...+ .+.+.......+ ++...
T Consensus 89 -----~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr 163 (749)
T KOG0705|consen 89 -----DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR 163 (749)
T ss_pred -----hhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc
Confidence 35677789999999999999999999998888877766778999999988554311 233334444444 44445
Q ss_pred CCEEEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 242 ~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~ 271 (286)
+.+++++|.+|.++..+|+.++.++....+
T Consensus 164 csy~et~atyGlnv~rvf~~~~~k~i~~~~ 193 (749)
T KOG0705|consen 164 CSYYETCATYGLNVERVFQEVAQKIVQLRK 193 (749)
T ss_pred cceeecchhhhhhHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999988765433
No 297
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.21 E-value=4.4e-10 Score=99.24 Aligned_cols=119 Identities=19% Similarity=0.191 Sum_probs=72.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh-------hc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD-------LY 172 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~-------~~ 172 (286)
...++|+++|.+|+||||++|++++... .+...++...........++.. +.++||||..+...... .+
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~--l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFT--LNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeE--EEEEECCCCCchHHHHHHHHHHHHHH
Confidence 4678999999999999999999998654 2222222222222233345544 89999999765432211 11
Q ss_pred c--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCC
Q psy10504 173 I--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLA 222 (286)
Q Consensus 173 ~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~ 222 (286)
+ ...|++++|..++.....+.-.+.+..+....+ .--.+.|||.|+.|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2 258999999776543222122233444443221 1135789999999976
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.20 E-value=3.5e-10 Score=101.54 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=65.7
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPT 230 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~ 230 (286)
+.+.|+||+|..+-.. .....+|.++++.+...+..++.++ ..+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~ 216 (332)
T PRK09435 149 YDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAA 216 (332)
T ss_pred CCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHH
Confidence 4588999999763332 2466799999997644444333332 21222 223899999998732211 011
Q ss_pred HHHHHHHH-------hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 231 LDGQALAQ-------SWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 231 ~~~~~~~~-------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.+...... .+..|++.+||+++.|++++++.|.+.++.
T Consensus 217 ~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 217 AEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 11111111 123689999999999999999999998763
No 299
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.20 E-value=3.7e-10 Score=97.88 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=73.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch--h-h-------hh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--S-M-------RD 170 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~-~-------~~ 170 (286)
..++|+++|.+|+|||||+|++.+... .....+++..........++.. +.+|||||-.... . . ..
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~--i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFK--LNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 568999999999999999999999654 2333344444444445555655 8999999966442 1 1 12
Q ss_pred hccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504 171 LYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLA 222 (286)
Q Consensus 171 ~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 222 (286)
.++. ..|++++|..++....-..-...+..+...... --.++++|.||+|..
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 2333 468888887776532112222334444432211 124799999999985
No 300
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.20 E-value=3e-10 Score=101.01 Aligned_cols=163 Identities=19% Similarity=0.171 Sum_probs=101.6
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCc---------------cceEEEEEEECC---------------
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI---------------EDFYRKEIEVDK--------------- 149 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~---------------~~~~~~~~~~~~--------------- 149 (286)
..+.++.|+.+|+.++|||||+-.|..+......-.+- .+.....+.+++
T Consensus 113 ~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~ 192 (527)
T COG5258 113 EAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEK 192 (527)
T ss_pred CCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHH
Confidence 34578999999999999999988887765543322111 111122222222
Q ss_pred ------eEEEEEEEeCCCcccchhh--hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 150 ------APCVLEILDTAGTEQFASM--RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 150 ------~~~~l~l~DtpG~~~~~~~--~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
....+.|+||.||+.|-.. +..+-+..|..++++.++|+.+.-.-..+-..+. -+.|+++++||+|+
T Consensus 193 ~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a-----~~lPviVvvTK~D~ 267 (527)
T COG5258 193 AAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALA-----MELPVIVVVTKIDM 267 (527)
T ss_pred hHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhh-----hcCCEEEEEEeccc
Confidence 1134789999999998764 4445578999999999999754322222111222 27899999999999
Q ss_pred CCCCCCC-CHHHH----------------------HHHHHhcC---CCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 222 ASHQREV-PTLDG----------------------QALAQSWG---CPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 222 ~~~~~~~-~~~~~----------------------~~~~~~~~---~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.++++.. ..++. ...+.+.+ +|++.+|+-+|+|++-|.+.+. .++.
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~-~Lp~ 339 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL-LLPK 339 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH-hCCc
Confidence 7443210 00111 11111222 6899999999999987755444 4443
No 301
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.19 E-value=5e-10 Score=95.00 Aligned_cols=162 Identities=20% Similarity=0.273 Sum_probs=97.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCcc---CCCccceEEEEEEECCeEEEEEEEeCCCcccchh--------hh---h
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY---DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS--------MR---D 170 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~--------~~---~ 170 (286)
++|+++|..|+||||++|.+++....... .+.+..........++.. +.++||||-.+... +. .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~--v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQ--VTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEE--EEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceE--EEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 58999999999999999999986553322 233334555556778877 88999999432111 11 1
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCCCCCCC---CC---HHHHHHHHHhcCCC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQRE---VP---TLDGQALAQSWGCP 243 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~~~~---~~---~~~~~~~~~~~~~~ 243 (286)
....+.|++++|+.++ +-+-++. ..+..+...... --..++||.|..|....... +. ......+.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~-r~t~~~~-~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLG-RFTEEDR-EVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETT-B-SHHHH-HHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecC-cchHHHH-HHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2345689999999998 3333222 233333333221 12468999999987633221 01 12244566677778
Q ss_pred EEEEeCC------CCCcHHHHHHHHHHHhhcCC
Q psy10504 244 FIEASAK------NKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 244 ~~~vSa~------~~~gv~~l~~~i~~~i~~~~ 270 (286)
|+.++.+ ....+.+|++.|-+.+.++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8888776 33568888888888777655
No 302
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.18 E-value=2.6e-10 Score=96.38 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=84.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-------CccCC-Ccc-----ceEEEEEEECC--------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-------EKYDP-TIE-----DFYRKEIEVDK-------------------- 149 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-------~~~~~-t~~-----~~~~~~~~~~~-------------------- 149 (286)
..+.|+++|+.|+|||||++++...... ..... ... ......+...+
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 3578999999999999999999763110 00000 000 00000011110
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP 229 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~ 229 (286)
....+.++||.|.-... ..+....+..+.|+|+.+...... .. ... .+.|.++++||+|+.+... ..
T Consensus 101 ~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~--~~-~~~------~~~a~iiv~NK~Dl~~~~~-~~ 167 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL--KY-PGM------FKEADLIVINKADLAEAVG-FD 167 (207)
T ss_pred CCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh--hh-HhH------HhhCCEEEEEHHHccccch-hh
Confidence 12346778888821111 111223455667888876542111 10 111 1457899999999973211 12
Q ss_pred HHHHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 230 TLDGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 230 ~~~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
..+.....+.. ..+++++||++|.|++++++++.+..
T Consensus 168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 22233333333 38999999999999999999998754
No 303
>KOG0460|consensus
Probab=99.17 E-value=1.6e-10 Score=101.20 Aligned_cols=174 Identities=16% Similarity=0.180 Sum_probs=113.8
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcC-------cCCC--------ccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSG-------CFME--------KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~-------~~~~--------~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.+..+.+|.-+||.++|||||-.++..- .+.. .+..-.......++.+.-...++-=.|+|||.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 3456799999999999999997777540 1100 011111133345555655555677899999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE--VPTLDGQALAQSWG- 241 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~- 241 (286)
|-..........|+.|+|++++|+. +.+..+.+.-++...-..+++.+||.|+.++... .-+.+.+++...++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~----MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf 205 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP----MPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGF 205 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC----CcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 9988888888999999999999976 3443333333232222356788899999844332 33345556666665
Q ss_pred ----CCEEEEeCC---CCC-------cHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 242 ----CPFIEASAK---NKT-------NVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 242 ----~~~~~vSa~---~~~-------gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
+|++.-||+ .|. .+.+|++.+=.+++....+.+.++
T Consensus 206 ~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R~~~~pF 255 (449)
T KOG0460|consen 206 DGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPERDLDKPF 255 (449)
T ss_pred CCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcccccCCCc
Confidence 688887776 332 256677777777776666665554
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=6.7e-10 Score=100.49 Aligned_cols=82 Identities=21% Similarity=0.196 Sum_probs=60.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch--
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA-- 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~-- 166 (286)
++|+++|.||+|||||+|++.+... ...++.|+.+.....+.+.+.. ..+.++|+||...-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 6899999999999999999998654 4567777777666666655531 248999999954311
Q ss_pred --hhhh---hcccCccEEEEEEECC
Q psy10504 167 --SMRD---LYIKNGQGFVVVYSLT 186 (286)
Q Consensus 167 --~~~~---~~~~~~d~vilv~d~~ 186 (286)
.+.. ..++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1222 2357899999999984
No 305
>KOG0468|consensus
Probab=99.15 E-value=2.4e-10 Score=107.54 Aligned_cols=119 Identities=23% Similarity=0.270 Sum_probs=89.6
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-------------c-----eEEEEE---EECCeEEEEEEE
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-------------D-----FYRKEI---EVDKAPCVLEIL 157 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-------------~-----~~~~~~---~~~~~~~~l~l~ 157 (286)
..+.+..+|+++|+-++|||+|++.|.....+..+..+-. . ....++ ...++.+.++++
T Consensus 123 ~~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nil 202 (971)
T KOG0468|consen 123 DNPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNIL 202 (971)
T ss_pred cCcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeee
Confidence 3445678999999999999999999988655443222111 0 000111 234677789999
Q ss_pred eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
|||||-.|..-....++.+|++++++|+.++..+..-+-....+.. +.|+++|+||+|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~-----~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN-----RLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc-----cCcEEEEEehhHHH
Confidence 9999999999999999999999999999999877765555555554 88999999999963
No 306
>KOG3905|consensus
Probab=99.13 E-value=1e-09 Score=95.76 Aligned_cols=168 Identities=16% Similarity=0.226 Sum_probs=112.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEE--CCeEEEEEEEeCCCcccchhhhhhcccCc----
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV--DKAPCVLEILDTAGTEQFASMRDLYIKNG---- 176 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~l~l~DtpG~~~~~~~~~~~~~~~---- 176 (286)
..-+|+++|+.++|||||+.+|.+..-... +..-.+..-.+.. .+...++.+|=..|..-...+....+...
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kk--gsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKK--GSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCC--CCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 456899999999999999999987542221 1111222222222 12233467788888766566555555443
Q ss_pred cEEEEEEECCCccc-HHHHHHHHHHHHHHhCC------------------------------------------------
Q psy10504 177 QGFVVVYSLTNHHT-FQDIKQMKELITRVKGS------------------------------------------------ 207 (286)
Q Consensus 177 d~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~------------------------------------------------ 207 (286)
-.+|++.|+++|+. ++.+..|...+..+...
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 36899999999954 45555565433322100
Q ss_pred ------------CCCcEEEEEeCCCCCC---CCC-------CCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 208 ------------ERVPILLVANKLDLAS---HQR-------EVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 208 ------------~~~piivv~nK~Dl~~---~~~-------~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
-++|++||+||+|... .+. ..-...++.++..+|...+.+|+++..|++-+...|.+.
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence 3699999999999831 111 122345678899999999999999999999999999998
Q ss_pred hhcCCCC
Q psy10504 266 MNFNPEK 272 (286)
Q Consensus 266 i~~~~~~ 272 (286)
+-.-+..
T Consensus 289 ~yG~~ft 295 (473)
T KOG3905|consen 289 SYGFPFT 295 (473)
T ss_pred hcCcccC
Confidence 7665433
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.12 E-value=1.8e-11 Score=105.42 Aligned_cols=112 Identities=19% Similarity=0.179 Sum_probs=58.5
Q ss_pred EEEEEeCCCcccchhhhhhcc--------cCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 153 VLEILDTAGTEQFASMRDLYI--------KNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~--------~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
.+.++|||||.++...+...- ...-++++++|+.-...... +..++..+... ..-+.|.|.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 478999999998877665543 44568899999875433222 22222222111 112789999999999973
Q ss_pred CCCC--C----------------CHHHHHHHHHhc---C-C-CEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 224 HQRE--V----------------PTLDGQALAQSW---G-C-PFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 224 ~~~~--~----------------~~~~~~~~~~~~---~-~-~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
.... . .....+.+++.. + . .++++|+++++|+++++..|-+.
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a 235 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKA 235 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHH
Confidence 1100 0 011111222222 2 3 79999999999999999887654
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.12 E-value=1.9e-09 Score=97.76 Aligned_cols=156 Identities=15% Similarity=0.226 Sum_probs=98.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC----c-------------CCCccCC---CccceEE-----EEEE-ECCeEEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG----C-------------FMEKYDP---TIEDFYR-----KEIE-VDKAPCVLEI 156 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~----~-------------~~~~~~~---t~~~~~~-----~~~~-~~~~~~~l~l 156 (286)
-.+-|+++|+.++|||||+++|.+. . .+++.++ ++++... ..+. .++....+++
T Consensus 16 G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 16 GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4578999999999999999999986 1 2333444 4444333 2222 2455566899
Q ss_pred EeCCCcccchhh-----------------------------hhhccc-CccEEEEEE-ECC--C--cccHHH-HHHHHHH
Q psy10504 157 LDTAGTEQFASM-----------------------------RDLYIK-NGQGFVVVY-SLT--N--HHTFQD-IKQMKEL 200 (286)
Q Consensus 157 ~DtpG~~~~~~~-----------------------------~~~~~~-~~d~vilv~-d~~--~--~~s~~~-~~~~~~~ 200 (286)
+||+|-..-.++ ....++ .++..++|. |.+ + ++.+.+ -..+...
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 999993311110 122344 788888888 764 1 122222 2345555
Q ss_pred HHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC--CCcHHHHHHHHHHH
Q psy10504 201 ITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN--KTNVNEMFAEIVRE 265 (286)
Q Consensus 201 i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~--~~gv~~l~~~i~~~ 265 (286)
+... ++|+++|+||.|-. ... .......+.+.++++++.+|+.+ .+.+..+++.++..
T Consensus 176 Lk~~----~kPfiivlN~~dp~-~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 176 LKEL----NKPFIILLNSTHPY-HPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHhc----CCCEEEEEECcCCC-Cch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 5553 89999999999943 111 33445566788899998888874 45677777766654
No 309
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.09 E-value=1.1e-09 Score=89.56 Aligned_cols=79 Identities=28% Similarity=0.199 Sum_probs=54.1
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC--CcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER--VPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN 251 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~ 251 (286)
.+.-|+|+|++.++- +.. +.-|. ..=++|+||.|+. ..-..+.+....-+++.+ .+++++|+++
T Consensus 118 d~~~v~VidvteGe~----------~P~-K~gP~i~~aDllVInK~DLa-~~v~~dlevm~~da~~~np~~~ii~~n~kt 185 (202)
T COG0378 118 DHLRVVVIDVTEGED----------IPR-KGGPGIFKADLLVINKTDLA-PYVGADLEVMARDAKEVNPEAPIIFTNLKT 185 (202)
T ss_pred hceEEEEEECCCCCC----------Ccc-cCCCceeEeeEEEEehHHhH-HHhCccHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 347899999987641 111 00011 1238999999997 444444555555555544 8999999999
Q ss_pred CCcHHHHHHHHHHHh
Q psy10504 252 KTNVNEMFAEIVREM 266 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i 266 (286)
|+|++++++|+....
T Consensus 186 g~G~~~~~~~i~~~~ 200 (202)
T COG0378 186 GEGLDEWLRFIEPQA 200 (202)
T ss_pred CcCHHHHHHHHHhhc
Confidence 999999999998754
No 310
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.09 E-value=7e-10 Score=97.14 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=58.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch----
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA---- 166 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~---- 166 (286)
|+++|.||+|||||+|++.+... ...++.++.+.....+.+.+.. ..++++|+||..+-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 57999999999999999999655 5567777777777666665532 248999999954211
Q ss_pred hhhhh---cccCccEEEEEEECC
Q psy10504 167 SMRDL---YIKNGQGFVVVYSLT 186 (286)
Q Consensus 167 ~~~~~---~~~~~d~vilv~d~~ 186 (286)
.+... .++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 12222 356799999999974
No 311
>KOG3886|consensus
Probab=99.09 E-value=2.8e-10 Score=94.81 Aligned_cols=159 Identities=20% Similarity=0.297 Sum_probs=100.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhcccCc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIKNG 176 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~~~ 176 (286)
.-||+++|.+|+||||+-..+..+. +.....+.+.+..-.++.+-|.-+ +.+||++||+.+-. .....+++.
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~-LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLV-LNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhhe-eehhccCCcHHHHHHHHhhcchhhheeh
Confidence 4689999999999999854444322 122222333344444555555433 88999999995443 456788999
Q ss_pred cEEEEEEECCCcccHHHHHHH---HHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHH----HHHHHHHhcCCCEEEEe
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQM---KELITRVKGSERVPILLVANKLDLASHQ-REVPTL----DGQALAQSWGCPFIEAS 248 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~----~~~~~~~~~~~~~~~vS 248 (286)
+++++|||++..+-..++..+ ++.+.+ ..|...+.+..+|+|+.... +..... ..+.+....++.++++|
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 999999999987655555544 344444 45678889999999997322 222122 22223333446778888
Q ss_pred CCCCCcHHHHHHHHHHHh
Q psy10504 249 AKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i 266 (286)
..+ +.+-+.+..+...+
T Consensus 161 iwD-etl~KAWS~iv~~l 177 (295)
T KOG3886|consen 161 IWD-ETLYKAWSSIVYNL 177 (295)
T ss_pred hhh-HHHHHHHHHHHHhh
Confidence 765 44555555555544
No 312
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.08 E-value=9.1e-10 Score=89.49 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=70.8
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEEC-------------------------------------
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVD------------------------------------- 148 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~------------------------------------- 148 (286)
|+|+|..++|||||+|+|++..+. ....+++..........+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999997643 233333321111111100
Q ss_pred -----------------CeEEEEEEEeCCCccc----chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCC
Q psy10504 149 -----------------KAPCVLEILDTAGTEQ----FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS 207 (286)
Q Consensus 149 -----------------~~~~~l~l~DtpG~~~----~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~ 207 (286)
.....+.|+||||... ...+...+++.+|++++|.++++..+-.+...+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~---- 156 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDP---- 156 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTT----
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcC----
Confidence 0012488999999642 335677888999999999999997766655555444443
Q ss_pred CCCcEEEEEeCC
Q psy10504 208 ERVPILLVANKL 219 (286)
Q Consensus 208 ~~~piivv~nK~ 219 (286)
.+..+++|.||.
T Consensus 157 ~~~~~i~V~nk~ 168 (168)
T PF00350_consen 157 DKSRTIFVLNKA 168 (168)
T ss_dssp TCSSEEEEEE-G
T ss_pred CCCeEEEEEcCC
Confidence 244589999984
No 313
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.07 E-value=6.5e-10 Score=96.37 Aligned_cols=154 Identities=21% Similarity=0.233 Sum_probs=97.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-----------CCCccCCCccceEE----------------EEEE---------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-----------FMEKYDPTIEDFYR----------------KEIE--------- 146 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-----------~~~~~~~t~~~~~~----------------~~~~--------- 146 (286)
+...|.|.|.||+|||||+..|...- +.+..+.|.+.... ....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 56789999999999999999987521 12223333221110 0000
Q ss_pred ---------ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 147 ---------VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 147 ---------~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
++.-.+.+.+++|.|--+.. ......+|.+++|.-..-++..+-++.-..++.. ++|+|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD---------i~vIN 197 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD---------IIVIN 197 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---------eeeEe
Confidence 01122457788888754333 3345678999999888778777777765555555 89999
Q ss_pred CCCCCCCCCCCCHHH-HHHHH------HhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 218 KLDLASHQREVPTLD-GQALA------QSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 218 K~Dl~~~~~~~~~~~-~~~~~------~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
|.|..+.+....... ...+. ..+..|++.+||.+|+|++++++.|.+....
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 999753322211111 11111 1233689999999999999999999987643
No 314
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.06 E-value=8.2e-10 Score=98.55 Aligned_cols=104 Identities=20% Similarity=0.230 Sum_probs=64.1
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL 231 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 231 (286)
+.+.|+||+|..... ......+|.++++.+.. +.+++......+. ++|.++|+||+|+.+........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~------~~~~ivv~NK~Dl~~~~~~~~~~ 194 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM------EIADIYVVNKADGEGATNVTIAR 194 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh------hhccEEEEEcccccchhHHHHHH
Confidence 568899999954222 23456678888775433 3344443333222 56889999999997332110000
Q ss_pred -----HHHHHHH---hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 232 -----DGQALAQ---SWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 232 -----~~~~~~~---~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
....+.. .+..+++++||+++.|+++++++|.+...
T Consensus 195 ~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 195 LMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0011111 12346999999999999999999998754
No 315
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.05 E-value=4e-09 Score=98.78 Aligned_cols=167 Identities=16% Similarity=0.270 Sum_probs=110.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC--CeEEEEEEEeCCCcccchhhhhhcccCc---
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD--KAPCVLEILDTAGTEQFASMRDLYIKNG--- 176 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~~l~l~DtpG~~~~~~~~~~~~~~~--- 176 (286)
..-.|+|+|..++|||||+.+|.+.. .+.++.+ ++....+..+ +...++.+|-..|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~ 100 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLP 100 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccccc
Confidence 34679999999999999999987632 2222322 2222222211 2234588999988666777666555432
Q ss_pred -cEEEEEEECCCcccH-HHHHHHHHHHHHHh------------------------------C------------------
Q psy10504 177 -QGFVVVYSLTNHHTF-QDIKQMKELITRVK------------------------------G------------------ 206 (286)
Q Consensus 177 -d~vilv~d~~~~~s~-~~~~~~~~~i~~~~------------------------------~------------------ 206 (286)
-.+|+|+|.+.|..+ +.+..|+..+..+. .
T Consensus 101 ~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~ 180 (472)
T PF05783_consen 101 NTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDE 180 (472)
T ss_pred ceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccc
Confidence 469999999998754 33444433222110 0
Q ss_pred -------------CCCCcEEEEEeCCCCCC---CCCC-------CCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 207 -------------SERVPILLVANKLDLAS---HQRE-------VPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 207 -------------~~~~piivv~nK~Dl~~---~~~~-------~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
.-++|++||++|+|... .+.. ....-++.++..+|+.++.+|++...+++.|++.|.
T Consensus 181 ~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~ 260 (472)
T PF05783_consen 181 SVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYIL 260 (472)
T ss_pred cccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHH
Confidence 01489999999999742 1111 122335777888999999999999999999999999
Q ss_pred HHhhcCCCC
Q psy10504 264 REMNFNPEK 272 (286)
Q Consensus 264 ~~i~~~~~~ 272 (286)
+.+...+..
T Consensus 261 h~l~~~~f~ 269 (472)
T PF05783_consen 261 HRLYGFPFK 269 (472)
T ss_pred HHhccCCCC
Confidence 998776654
No 316
>KOG1707|consensus
Probab=99.03 E-value=8.5e-09 Score=96.26 Aligned_cols=162 Identities=20% Similarity=0.288 Sum_probs=117.8
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
...+-+++.++|+.++|||.+++.+.++.+...+.++.. .+....+...+....+.+.|.+-. ....+...- ..||+
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv 498 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV 498 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence 344568999999999999999999999888776655544 333444555677777888888754 333333222 78999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNE 257 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~~ 257 (286)
++++||.+++.+++-+...+..-.. ..+.|+++|++|+|+.+..+...... ..++.+++++ -+.+|.++... .+
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqp-de~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQP-DEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCCh-HHHHHhcCCCCCeeeccCCCCC-ch
Confidence 9999999999999888765554333 25899999999999985544444444 8889998853 45677774223 88
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
+|..|+..+.-
T Consensus 574 lf~kL~~~A~~ 584 (625)
T KOG1707|consen 574 LFIKLATMAQY 584 (625)
T ss_pred HHHHHHHhhhC
Confidence 99999887644
No 317
>KOG0466|consensus
Probab=99.00 E-value=4e-10 Score=97.50 Aligned_cols=169 Identities=16% Similarity=0.148 Sum_probs=108.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC---cCCCccCCCcc----ceEEEEEE--------------------------E
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPTIE----DFYRKEIE--------------------------V 147 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t~~----~~~~~~~~--------------------------~ 147 (286)
...+++|.-+||..+||||++.++.+- +|.......++ -...+.+. .
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 346799999999999999998888761 11111100000 00000000 0
Q ss_pred CC------eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----cccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 148 DK------APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----HHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 148 ~~------~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
.+ .-.++.|+|+|||+-..+.........|+++++++.+. |++.+.+... ++.+ =+.++++-|
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaav--eiM~-----LkhiiilQN 187 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAV--EIMK-----LKHIIILQN 187 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHH--HHhh-----hceEEEEec
Confidence 01 11368899999999888877777778899999999886 4444444321 2222 247899999
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCC
Q psy10504 218 KLDLASHQRE-VPTLDGQALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276 (286)
Q Consensus 218 K~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~ 276 (286)
|+|+..+... ...++++.+.+. .+.|++++||.-+.|++.+.+.|..+++.....-..+
T Consensus 188 KiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~s~ 250 (466)
T KOG0466|consen 188 KIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFTSP 250 (466)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccCCC
Confidence 9999733222 122223333332 2479999999999999999999999998766554433
No 318
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.99 E-value=3.4e-10 Score=96.82 Aligned_cols=150 Identities=21% Similarity=0.228 Sum_probs=87.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-----------CCCccCCCcc----------------ceEEEEEEECC------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-----------FMEKYDPTIE----------------DFYRKEIEVDK------ 149 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-----------~~~~~~~t~~----------------~~~~~~~~~~~------ 149 (286)
+.+.|.|.|+||+|||||+++|.... +.+..+.|.+ ..+.......+
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 45799999999999999999987511 1122222221 11111111111
Q ss_pred ------------eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 150 ------------APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 150 ------------~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
-.+.+.|++|.|--+-. -....-+|.+++|....-++..+-++.-..++.. ++|+|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~vVN 175 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFVVN 175 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEEEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEEEe
Confidence 11447788888743222 2345679999999998888877777765555544 89999
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 218 KLDLASHQREVPTLDGQALAQ-------SWGCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 218 K~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
|.|.+...+. ..+.+.... .+..|++.+||.++.|++++++.|.+..
T Consensus 176 KaD~~gA~~~--~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 176 KADRPGADRT--VRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp --SHHHHHHH--HHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CCChHHHHHH--HHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9996522222 111121111 1235899999999999999999998854
No 319
>KOG0082|consensus
Probab=98.98 E-value=3.3e-09 Score=94.92 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=89.2
Q ss_pred EEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc----------HHHHHHHHHHHHHHhCCCCC
Q psy10504 141 YRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT----------FQDIKQMKELITRVKGSERV 210 (286)
Q Consensus 141 ~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~ 210 (286)
....+.+.+.. +.++|++||...+.-|.+.+.+++++++|+++++-.. +.+...+++.+.....-.+.
T Consensus 186 ~e~~F~~k~~~--f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~t 263 (354)
T KOG0082|consen 186 VEVEFTIKGLK--FRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANT 263 (354)
T ss_pred eEEEEEeCCCc--eEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccC
Confidence 34455566655 8999999999999999999999999999999987321 22333455566655555689
Q ss_pred cEEEEEeCCCCCCCC--------------CCCCHHHHHHHHH-----hcC-----CCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 211 PILLVANKLDLASHQ--------------REVPTLDGQALAQ-----SWG-----CPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 211 piivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----~~~-----~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
++|+..||.|+-... ......++..+.+ .+. +-++.+.|.+-.+|+.+|+.+.+.+
T Consensus 264 siiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~I 343 (354)
T KOG0082|consen 264 SIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTI 343 (354)
T ss_pred cEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHH
Confidence 999999999985210 1122223322221 111 2256778999999999999999988
Q ss_pred hcCCC
Q psy10504 267 NFNPE 271 (286)
Q Consensus 267 ~~~~~ 271 (286)
...+.
T Consensus 344 i~~nl 348 (354)
T KOG0082|consen 344 IQNNL 348 (354)
T ss_pred HHHHH
Confidence 76543
No 320
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.97 E-value=9.7e-09 Score=88.28 Aligned_cols=68 Identities=18% Similarity=0.205 Sum_probs=44.5
Q ss_pred EEEEEEeCCCccc-------------chhhhhhcccC-ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 152 CVLEILDTAGTEQ-------------FASMRDLYIKN-GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 152 ~~l~l~DtpG~~~-------------~~~~~~~~~~~-~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
..++++||||-.. ...+...|+++ .+.+++|+|++....-++.......+. ..+.|+++|+|
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViT 200 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVIT 200 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEE
Confidence 3699999999642 11245567774 569999999876443333322222222 23789999999
Q ss_pred CCCCCC
Q psy10504 218 KLDLAS 223 (286)
Q Consensus 218 K~Dl~~ 223 (286)
|.|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999873
No 321
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.5e-08 Score=90.75 Aligned_cols=84 Identities=19% Similarity=0.240 Sum_probs=61.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC----------------eEEEEEEEeCCCccc--
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK----------------APCVLEILDTAGTEQ-- 164 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----------------~~~~l~l~DtpG~~~-- 164 (286)
.++++|+|.||||||||+|+++.... ...|+.++.+.......+.. ....+.|+|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998765 47888887766555444321 123588999998432
Q ss_pred --chhhhhhc---ccCccEEEEEEECCC
Q psy10504 165 --FASMRDLY---IKNGQGFVVVYSLTN 187 (286)
Q Consensus 165 --~~~~~~~~---~~~~d~vilv~d~~~ 187 (286)
-..+-..| ++.+|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 22233333 578999999999874
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.92 E-value=2.9e-09 Score=96.43 Aligned_cols=158 Identities=16% Similarity=0.137 Sum_probs=78.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCC-----CccceEEEEEEECCeEEEEEEEeCCCcccchhhhhh-----
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDP-----TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDL----- 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~-----t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~----- 171 (286)
.+++|+|+|.+|+|||||+|+|.+-... ....+ |+.+. ..+.....+ ++.+||.||......-...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~p-nv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFP-NVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-T-TEEEEEE--GGGSS--HHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCC-CCeEEeCCCCCCCCCCHHHHHHHc
Confidence 4589999999999999999999873221 11111 22222 222223222 2789999996533222222
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC------CCCCCCCHHH----HHHHHH---
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA------SHQREVPTLD----GQALAQ--- 238 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~------~~~~~~~~~~----~~~~~~--- 238 (286)
-+...|.+|++.+- .-+..++ .....+.+ .++|+.+|-||+|.. ...+....++ ++..+.
T Consensus 111 ~~~~yD~fiii~s~--rf~~ndv-~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L 183 (376)
T PF05049_consen 111 KFYRYDFFIIISSE--RFTENDV-QLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL 183 (376)
T ss_dssp TGGG-SEEEEEESS--S--HHHH-HHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred cccccCEEEEEeCC--CCchhhH-HHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence 34567877776652 2222222 22334444 288999999999961 1122222222 111111
Q ss_pred -hcC---CCEEEEeCCCC--CcHHHHHHHHHHHhhcCC
Q psy10504 239 -SWG---CPFIEASAKNK--TNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 239 -~~~---~~~~~vSa~~~--~gv~~l~~~i~~~i~~~~ 270 (286)
..+ .++|.+|+.+- .+...|.+.+.+.++..+
T Consensus 184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 123 36899999874 468888888888776643
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.88 E-value=4.7e-08 Score=85.84 Aligned_cols=55 Identities=18% Similarity=0.126 Sum_probs=38.3
Q ss_pred CcEEEEEeCCCCCCCCCCCCHHHHHHHHHh--cCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 210 VPILLVANKLDLASHQREVPTLDGQALAQS--WGCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 210 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
.+-++|+||+|+.+. ...+.+......+. .+.+++.+||++|+|++++.+||.+.
T Consensus 231 ~ADIVVLNKiDLl~~-~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPY-LNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcc-cHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 466999999999721 11122222222222 35889999999999999999999874
No 324
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.86 E-value=1.1e-08 Score=82.39 Aligned_cols=96 Identities=17% Similarity=0.188 Sum_probs=67.3
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF 244 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 244 (286)
|+.+..+..+++|++++|+|++++...++. .+...+. ..++|+++|+||+|+.+. .. ......+.+..+.++
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~----~~~~p~iiv~NK~Dl~~~-~~--~~~~~~~~~~~~~~~ 73 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL----ELGKKLLIVLNKADLVPK-EV--LEKWKSIKESEGIPV 73 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH----hCCCcEEEEEEhHHhCCH-HH--HHHHHHHHHhCCCcE
Confidence 456778888999999999999886543331 2222221 236899999999998621 11 111112334456789
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+++||+++.|++++++.+.+.++.
T Consensus 74 ~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEEEccccccHHHHHHHHHHHHhh
Confidence 999999999999999999988764
No 325
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.85 E-value=4.8e-08 Score=86.18 Aligned_cols=113 Identities=24% Similarity=0.326 Sum_probs=66.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCcc---C-------CCc-cceEEEEEEECCeEEEEEEEeCCCcccc-------
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY---D-------PTI-EDFYRKEIEVDKAPCVLEILDTAGTEQF------- 165 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~---~-------~t~-~~~~~~~~~~~~~~~~l~l~DtpG~~~~------- 165 (286)
.++|+++|.+|+|||||+|.|++....... . .+. .......+.-++..+.++++||||....
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 589999999999999999999996543331 0 111 1222344566788889999999993211
Q ss_pred -----------hhh-------hhhcc--cCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 166 -----------ASM-------RDLYI--KNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 166 -----------~~~-------~~~~~--~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
... .+... ...|++++.++.+... .-.++. .+.+. ...+++|-|+.|+|..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~----~mk~L--s~~vNvIPvIaKaD~l 155 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIE----FMKRL--SKRVNVIPVIAKADTL 155 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHH----HHHHH--TTTSEEEEEESTGGGS
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHH----HHHHh--cccccEEeEEeccccc
Confidence 100 00011 2368999999987532 222222 22222 2268999999999986
No 326
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.84 E-value=1.7e-08 Score=83.97 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=66.4
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----H
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----Q 238 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~ 238 (286)
.+..++..+++.+|++++|+|++++... |...+.. ...++|+++|+||+|+.+. .........+. +
T Consensus 23 ~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~--~~~~~~~ilV~NK~Dl~~~--~~~~~~~~~~~~~~~~~ 93 (190)
T cd01855 23 FILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRL--FGGNNPVILVGNKIDLLPK--DKNLVRIKNWLRAKAAA 93 (190)
T ss_pred HHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHH--hcCCCcEEEEEEchhcCCC--CCCHHHHHHHHHHHHHh
Confidence 3577888999999999999999886421 2222221 1237899999999999632 22222222222 2
Q ss_pred hcC---CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 239 SWG---CPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 239 ~~~---~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
..+ .+++++||+++.|+++++++|.+.++
T Consensus 94 ~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 94 GLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 233 26899999999999999999999875
No 327
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.79 E-value=9e-08 Score=91.66 Aligned_cols=119 Identities=20% Similarity=0.201 Sum_probs=74.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccch-------hh---hh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-ME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA-------SM---RD 170 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~-------~~---~~ 170 (286)
..++|+++|.+|+||||++|++++... .. ...+.++.........++.. +.++||||..... .+ ..
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~--L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVK--IRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCce--EEEEECCCCCccccchHHHHHHHHHHH
Confidence 457899999999999999999999653 22 22233333333444455655 8999999966431 11 11
Q ss_pred hccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCC-CCcEEEEEeCCCCCC
Q psy10504 171 LYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE-RVPILLVANKLDLAS 223 (286)
Q Consensus 171 ~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~-~~piivv~nK~Dl~~ 223 (286)
.++. ..|++++|..++......+-..++..+....+.. =..+|||.|+.|..+
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 2333 4799999998764333222224445554433211 236799999999863
No 328
>KOG1486|consensus
Probab=98.79 E-value=1.9e-07 Score=79.14 Aligned_cols=155 Identities=23% Similarity=0.233 Sum_probs=106.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIK 174 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~ 174 (286)
-.-+|+++|-|.+|||||+..+....- ...|..|+-..+...+.+++.. +++.|.||..+-.+ ..-...+
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~--IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGAN--IQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCce--EEEecCcccccccccCCCCCceEEEEee
Confidence 457899999999999999999987543 5678888888888889999988 89999999653322 2234567
Q ss_pred CccEEEEEEECCCcccHHHH-HHHHHHH----------------------------------------H-HHh-------
Q psy10504 175 NGQGFVVVYSLTNHHTFQDI-KQMKELI----------------------------------------T-RVK------- 205 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~-~~~~~~i----------------------------------------~-~~~------- 205 (286)
.+|.+++|.|++..+.-..+ ..-++.. . .++
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 89999999999875533211 1111111 0 000
Q ss_pred ----------------CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 206 ----------------GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 206 ----------------~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
...-++.+-|-||+|.. +.++...+++..+.- -+|+.-..|++.+++.+-+.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~v------s~eevdrlAr~Pnsv--ViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQV------SIEEVDRLARQPNSV--VISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeecccee------cHHHHHHHhcCCCcE--EEEeccccCHHHHHHHHHHHhc
Confidence 00124556666776643 556666777666653 4566777899999999988764
No 329
>KOG0410|consensus
Probab=98.74 E-value=1.3e-08 Score=88.95 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=97.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI 173 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~ 173 (286)
-+.|.++|-.|+|||||+++|....... +.-..+-|........+++.. +.+.||-|-- .|.+.. .-.
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~-vlltDTvGFisdLP~~LvaAF~ATL-eeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNF-VLLTDTVGFISDLPIQLVAAFQATL-EEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcE-EEEeechhhhhhCcHHHHHHHHHHH-HHH
Confidence 4679999999999999999999654432 222222233344444555543 6689999932 222222 224
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc----EEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP----ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
..+|.++-|.|+++|..-+.....+.-+... ..+..| ++=|=||+|..+...+ .+.++ .+.+||
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~~e---------~E~n~--~v~isa 323 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDEVE---------EEKNL--DVGISA 323 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhccccccccccCc---------cccCC--cccccc
Confidence 6799999999999998666655555555553 222233 3445688887532221 11222 577999
Q ss_pred CCCCcHHHHHHHHHHHhhc
Q psy10504 250 KNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~ 268 (286)
++|+|++++.+.+-.++..
T Consensus 324 ltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccCccHHHHHHHHHHHhhh
Confidence 9999999999988777654
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.73 E-value=1.6e-07 Score=83.36 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=67.7
Q ss_pred hhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504 170 DLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vS 248 (286)
+..+.++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+. . ............+.+++++|
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~-~--~~~~~~~~~~~~g~~v~~vS 145 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDD-E--EEELELVEALALGYPVLAVS 145 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCCh-H--HHHHHHHHHHhCCCeEEEEE
Confidence 44588999999999999988 77888887776654 27899999999999632 1 11222333445778999999
Q ss_pred CCCCCcHHHHHHHHHH
Q psy10504 249 AKNKTNVNEMFAEIVR 264 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~ 264 (286)
|+++.|++++++.+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999887764
No 331
>KOG0465|consensus
Probab=98.73 E-value=3.8e-08 Score=92.30 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=82.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC------CccCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM------EKYDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~------~~~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
+.-+|.+.-|-++||||+-.+.+...-. .....++. .....-.......+++.++|||||.+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 4457999999999999998887651100 00111111 111111222333566999999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.--..+.++..|++|+++|+..+..-+...-|.+.-.. ++|-+..+||+|..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry-----~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY-----NVPRICFINKMDRM 169 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc-----CCCeEEEEehhhhc
Confidence 98889999999999999999998877777777665444 89999999999975
No 332
>KOG0467|consensus
Probab=98.72 E-value=3.9e-08 Score=94.19 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=80.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCCccCCCcc-------------ceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEKYDPTIE-------------DFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~~t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
...-+++++.|.++|||||.+.|.. +.+.+.-.++++ +.....+..-.+.+.+.++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 3456799999999999999999975 222222222221 1111122333455679999999999999
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
+......+-+|++++++|+..+...+...-..+.... +...++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~-----~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIE-----GLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHc-----cCceEEEEehhhh
Confidence 9999999999999999999987755554433333333 6677999999993
No 333
>KOG2486|consensus
Probab=98.72 E-value=1.9e-08 Score=86.34 Aligned_cols=158 Identities=15% Similarity=0.124 Sum_probs=95.5
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC-CccceEEEEEEECCeEEEEEEEeCCC----------cccchhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP-TIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASM 168 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~ 168 (286)
+..+.+.++++|.+|+|||||+|.+........... ..+.+.......-+.. +.++|.|| ..++..+
T Consensus 132 Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~--~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 132 PKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKS--WYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccce--EEEEecCCcccccCCccCcchHhHh
Confidence 345779999999999999999999998655443332 4444444444334444 77899999 2245556
Q ss_pred hhhcccCcc---EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC---CCCHHHHHH----HHH
Q psy10504 169 RDLYIKNGQ---GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR---EVPTLDGQA----LAQ 238 (286)
Q Consensus 169 ~~~~~~~~d---~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~---~~~~~~~~~----~~~ 238 (286)
...|+.+.+ -+++.+|++-+..--+. ....+....++|..+|.||+|...... .-....+.. +..
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~-----~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDN-----PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCCh-----HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 666665543 35566666654322222 222222334899999999999863211 001111111 111
Q ss_pred h---cCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 239 S---WGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 239 ~---~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
. ...|.+.+|+.++.|+++|.-.+.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 1 1145567999999999988655544
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.68 E-value=2.8e-07 Score=82.17 Aligned_cols=87 Identities=22% Similarity=0.259 Sum_probs=63.5
Q ss_pred cccCccEEEEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 250 (286)
.+.++|.+++|+|++++...... ..|+..+.. .++|+++|+||+|+.+ ... .........+..+.+++++||+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~-~~~-~~~~~~~~~~~~g~~v~~vSA~ 150 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLD-DLE-EARELLALYRAIGYDVLELSAK 150 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCC-CHH-HHHHHHHHHHHCCCeEEEEeCC
Confidence 46899999999999988765543 556555443 3789999999999962 221 1222334445667899999999
Q ss_pred CCCcHHHHHHHHHH
Q psy10504 251 NKTNVNEMFAEIVR 264 (286)
Q Consensus 251 ~~~gv~~l~~~i~~ 264 (286)
++.|++++++.+..
T Consensus 151 ~g~gi~~L~~~l~g 164 (298)
T PRK00098 151 EGEGLDELKPLLAG 164 (298)
T ss_pred CCccHHHHHhhccC
Confidence 99999999987743
No 335
>KOG1143|consensus
Probab=98.66 E-value=1.5e-07 Score=83.86 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=94.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC------------------CCc-----c-ceEEEEEEEC----------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD------------------PTI-----E-DFYRKEIEVD---------- 148 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~------------------~t~-----~-~~~~~~~~~~---------- 148 (286)
-.++++++|-.++|||||+--|..+......- ..+ + +.....+.+.
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 46899999999999999987776644432210 000 0 1111111111
Q ss_pred CeEEEEEEEeCCCcccchhhhhhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-
Q psy10504 149 KAPCVLEILDTAGTEQFASMRDLYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ- 225 (286)
Q Consensus 149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~- 225 (286)
.....++|+|.+||.+|.......+.. .|..++|++++.+..... ++-+-.+.. -++|+.++++|+|+.+..
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 122348999999999999877666655 688999999987643322 222233333 289999999999997331
Q ss_pred --C--------------------CCCHHHHHHHHHh----cCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 226 --R--------------------EVPTLDGQALAQS----WGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 226 --~--------------------~~~~~~~~~~~~~----~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+ .....+.-..+.+ .-+|++.+|..+|+|++-+...+
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 0 0111111111111 11689999999999998664433
No 336
>KOG3887|consensus
Probab=98.65 E-value=8e-08 Score=80.88 Aligned_cols=163 Identities=13% Similarity=0.197 Sum_probs=95.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCcccchh---hhhhcccCccEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQFAS---MRDLYIKNGQGFV 180 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~~~~---~~~~~~~~~d~vi 180 (286)
++|++||...+||||+-.-.... ..+..+--.+.. ....-.+.+.-+.+++||.|||-.+.. -....++.+.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred ceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 56999999999999985444332 222111100000 000111223446699999999876543 2345678999999
Q ss_pred EEEECCCcccHHHHHHHHHHHH-HHhCCCCCcEEEEEeCCCCCCCCCCCCH------HHHHHHHH----hcCCCEEEEeC
Q psy10504 181 VVYSLTNHHTFQDIKQMKELIT-RVKGSERVPILLVANKLDLASHQREVPT------LDGQALAQ----SWGCPFIEASA 249 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~-~~~~~~~~piivv~nK~Dl~~~~~~~~~------~~~~~~~~----~~~~~~~~vSa 249 (286)
+|+|+.|. -.+.+..+...+. .++-.|++.+=|.+.|.|...++..+.. ...+.++. ...+.++.+|.
T Consensus 107 fvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI 185 (347)
T KOG3887|consen 107 FVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI 185 (347)
T ss_pred EEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence 99999764 2233333323332 3346688999999999998743322111 11111211 22255777887
Q ss_pred CCCCcHHHHHHHHHHHh-hcCC
Q psy10504 250 KNKTNVNEMFAEIVREM-NFNP 270 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i-~~~~ 270 (286)
.+ ..+-+.|..+.+++ ++.+
T Consensus 186 yD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 186 YD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred cc-hHHHHHHHHHHHHHhhhch
Confidence 65 67888888887765 4444
No 337
>PRK12288 GTPase RsgA; Reviewed
Probab=98.64 E-value=1.5e-07 Score=85.45 Aligned_cols=90 Identities=16% Similarity=0.163 Sum_probs=67.3
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
...++|.+++|++.+...++..+..|+..... .++|.++|+||+|+.+..............+..+.+++++||++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~t 192 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHT 192 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 35679999999999888888888888765443 37899999999999732211111222233345678999999999
Q ss_pred CCcHHHHHHHHHHH
Q psy10504 252 KTNVNEMFAEIVRE 265 (286)
Q Consensus 252 ~~gv~~l~~~i~~~ 265 (286)
+.|++++++.|...
T Consensus 193 g~GideL~~~L~~k 206 (347)
T PRK12288 193 GEGLEELEAALTGR 206 (347)
T ss_pred CcCHHHHHHHHhhC
Confidence 99999999998763
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=98.62 E-value=2e-07 Score=84.68 Aligned_cols=93 Identities=17% Similarity=0.249 Sum_probs=66.6
Q ss_pred hhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF 244 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 244 (286)
..+.+..+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+|+.+. .. ..........++.++
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~-~~--~~~~~~~~~~~g~~v 152 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSP-TE--QQQWQDRLQQWGYQP 152 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCCh-HH--HHHHHHHHHhcCCeE
Confidence 334555689999999999999875 34455666554432 37899999999999622 11 122222334678889
Q ss_pred EEEeCCCCCcHHHHHHHHHHH
Q psy10504 245 IEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~ 265 (286)
+++||+++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 999999999999999988653
No 339
>KOG0464|consensus
Probab=98.60 E-value=8e-09 Score=92.84 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=94.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc--------CcCCCccCCCcc-----------ceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS--------GCFMEKYDPTIE-----------DFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~--------~~~~~~~~~t~~-----------~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+--+|.++.+.++||||...+++. +.+... .|.+ ...+.-+.++.+..++.++|||||-
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddg--dtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDG--DTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCC--chHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 345799999999999999888765 111111 1111 3344455566666669999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC 242 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 242 (286)
+|+--..+.++..|+++.|||++.+...+.+.-|.+.-.. ++|-+..+||+|+....-+ ...+.+.++++.
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~-----~ip~~~finkmdk~~anfe---~avdsi~ekl~a 184 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF-----KIPAHCFINKMDKLAANFE---NAVDSIEEKLGA 184 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc-----CCchhhhhhhhhhhhhhhh---hHHHHHHHHhCC
Confidence 9999899999999999999999998888888777665433 8899999999998733322 223444555554
No 340
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.58 E-value=2.9e-07 Score=85.23 Aligned_cols=122 Identities=14% Similarity=0.186 Sum_probs=81.1
Q ss_pred EEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc----------cHHHHHHHHHHHHHHhCCCCCc
Q psy10504 143 KEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH----------TFQDIKQMKELITRVKGSERVP 211 (286)
Q Consensus 143 ~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~p 211 (286)
..+.+ ++.. +.++|++|+...+.-|..++.+.+++|+|+++++-. .+.+....+..+.......+.|
T Consensus 228 ~~f~~~~~~~--~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ 305 (389)
T PF00503_consen 228 IDFNFSGSRK--FRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTP 305 (389)
T ss_dssp EEEEE-TTEE--EEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSE
T ss_pred EEEEeecccc--cceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCc
Confidence 34445 4444 899999999999999999999999999999987522 2444444555555544445899
Q ss_pred EEEEEeCCCCCC----CCC-----------C--CCHHHHHHHHHh-c-----------CCCEEEEeCCCCCcHHHHHHHH
Q psy10504 212 ILLVANKLDLAS----HQR-----------E--VPTLDGQALAQS-W-----------GCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 212 iivv~nK~Dl~~----~~~-----------~--~~~~~~~~~~~~-~-----------~~~~~~vSa~~~~gv~~l~~~i 262 (286)
++|++||.|+.. ... . .+......+... + .+-++.++|.+.+.++.+|+.+
T Consensus 306 iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v 385 (389)
T PF00503_consen 306 IILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAV 385 (389)
T ss_dssp EEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHH
T ss_pred eEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHh
Confidence 999999999631 110 0 122333222221 1 1235688999999999999988
Q ss_pred HHHh
Q psy10504 263 VREM 266 (286)
Q Consensus 263 ~~~i 266 (286)
.+.+
T Consensus 386 ~~~i 389 (389)
T PF00503_consen 386 KDII 389 (389)
T ss_dssp HHHH
T ss_pred cCcC
Confidence 7754
No 341
>KOG0459|consensus
Probab=98.55 E-value=1.1e-07 Score=85.27 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=97.5
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcC--cCC------------------------------CccCCCccceEEEEEE
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSG--CFM------------------------------EKYDPTIEDFYRKEIE 146 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------------------------------~~~~~t~~~~~~~~~~ 146 (286)
.++..+++++++|+.++||||+-..+... .+. ....+.+.......+.
T Consensus 74 ~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FE 153 (501)
T KOG0459|consen 74 EYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFE 153 (501)
T ss_pred CCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEE
Confidence 44567899999999999999984444320 000 0000111112222233
Q ss_pred ECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 147 ~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
.... ++++.|+|||..|-...-.....||..++|+++...+ .|+.--+......-++...-..+|+++||+|-+.
T Consensus 154 te~~--~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPt 231 (501)
T KOG0459|consen 154 TENK--RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPT 231 (501)
T ss_pred ecce--eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCc
Confidence 3333 4999999999999988888888999999999996532 3333333333333333344568899999999763
Q ss_pred CCCCCCHHHH-------HHHHHhcC------CCEEEEeCCCCCcHHHHHH
Q psy10504 224 HQREVPTLDG-------QALAQSWG------CPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 224 ~~~~~~~~~~-------~~~~~~~~------~~~~~vSa~~~~gv~~l~~ 260 (286)
. .++.+.. ..+....| ..+++||..+|.++++..+
T Consensus 232 v--nWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 232 V--NWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred c--CcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 2 2222222 22222222 4589999999999988654
No 342
>KOG0463|consensus
Probab=98.53 E-value=8.2e-07 Score=79.25 Aligned_cols=152 Identities=19% Similarity=0.231 Sum_probs=87.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC------------------ccCCCcc---------------------ceEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME------------------KYDPTIE---------------------DFYRK 143 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------------~~~~t~~---------------------~~~~~ 143 (286)
-+.+|+++|..++|||||+--|..+.... ......+ .....
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 46899999999999999976665432221 1111111 00001
Q ss_pred EEEECCeEEEEEEEeCCCcccchhhhhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 144 EIEVDKAPCVLEILDTAGTEQFASMRDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 144 ~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
.+- .+....++|+|.+||++|-...-... .-.|..++++-++.+. +--.++.+..... -++|+.+|.||+|.
T Consensus 212 kIc-e~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa----L~VPVfvVVTKIDM 285 (641)
T KOG0463|consen 212 KIC-EDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA----LHVPVFVVVTKIDM 285 (641)
T ss_pred eec-cccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh----hcCcEEEEEEeecc
Confidence 111 11223489999999999987554433 3468888888776542 1111121222122 27899999999998
Q ss_pred CCCCCCCCHHHH---HHHHHh--------------------------cCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 222 ASHQREVPTLDG---QALAQS--------------------------WGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 222 ~~~~~~~~~~~~---~~~~~~--------------------------~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
..++ +-++.. ..+.+. .-||+|.+|-.+|+|++-+...+
T Consensus 286 CPAN--iLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 286 CPAN--ILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred CcHH--HHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 6322 111111 111111 12678999999999997664443
No 343
>KOG1954|consensus
Probab=98.50 E-value=8.9e-07 Score=78.89 Aligned_cols=116 Identities=15% Similarity=0.230 Sum_probs=79.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEE-----CCeE-----------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEV-----DKAP----------------------- 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~-----~~~~----------------------- 151 (286)
..+-|+++|.-..||||+++.|+...++. ...||+..++...... +|..
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 45679999999999999999999987764 3345554333322211 1110
Q ss_pred ----------EEEEEEeCCCcc-----------cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC
Q psy10504 152 ----------CVLEILDTAGTE-----------QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV 210 (286)
Q Consensus 152 ----------~~l~l~DtpG~~-----------~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 210 (286)
=.++++||||.- .|......+...+|.++++||+...+--++....+..+.-. .-
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~----Ed 212 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGH----ED 212 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCC----cc
Confidence 158999999933 23445566788999999999998766555555555554432 34
Q ss_pred cEEEEEeCCCCC
Q psy10504 211 PILLVANKLDLA 222 (286)
Q Consensus 211 piivv~nK~Dl~ 222 (286)
.+-||.||.|..
T Consensus 213 kiRVVLNKADqV 224 (532)
T KOG1954|consen 213 KIRVVLNKADQV 224 (532)
T ss_pred eeEEEecccccc
Confidence 677889999986
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.49 E-value=3.2e-07 Score=72.60 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=37.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCc--cCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEK--YDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
+++++|.+|+|||||+|++.+...... ..+++. ....+.+++ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTK--HFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCccc--ceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998765322 222222 233444544 2789999995
No 345
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.49 E-value=5.8e-07 Score=82.23 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=69.6
Q ss_pred cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH----HHH
Q psy10504 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ----ALA 237 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~~ 237 (286)
.++|..+...+++.++++++|+|+.|.. ..|...+.... .+.|+++|+||+|+.+. ........ ...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~k--~~~~~~~~~~l~~~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLPK--SVNLSKIKEWMKKRA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCCC--CCCHHHHHHHHHHHH
Confidence 5578888899999999999999998754 23444444432 26799999999999632 22222222 335
Q ss_pred HhcCC---CEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 238 QSWGC---PFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 238 ~~~~~---~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
+..++ .++.+||++|.|++++++.|.+.
T Consensus 121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 55665 48999999999999999999765
No 346
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.46 E-value=1.6e-06 Score=77.39 Aligned_cols=114 Identities=26% Similarity=0.424 Sum_probs=69.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCcc----------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchh----
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKY----------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFAS---- 167 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~----------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---- 167 (286)
-.+.|.++|..|.|||||+|.|++....... .+++. ......+.-++....++++||||--++-.
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~ 101 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC 101 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence 4689999999999999999999986443321 11111 22233445567788899999999322111
Q ss_pred ----------hhhhc------------c--cCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 168 ----------MRDLY------------I--KNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 168 ----------~~~~~------------~--~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
..+.| + ...|++++.+..+... +.-++..+ ..+ ...+.+|-|+-|+|..
T Consensus 102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~M-k~l-----s~~vNlIPVI~KaD~l 175 (373)
T COG5019 102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAM-KRL-----SKRVNLIPVIAKADTL 175 (373)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHH-HHH-----hcccCeeeeeeccccC
Confidence 01111 1 2257888888766532 22222221 122 2367889999999986
No 347
>KOG0448|consensus
Probab=98.43 E-value=1.9e-06 Score=82.09 Aligned_cols=145 Identities=20% Similarity=0.256 Sum_probs=85.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CCCccceEE-------------------------------------
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DPTIEDFYR------------------------------------- 142 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~t~~~~~~------------------------------------- 142 (286)
.....||+|.|+.++||||++|+++...+.+.. -+++..+..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 446789999999999999999999886554332 222211100
Q ss_pred ------EEEEECCeE-----EEEEEEeCCCcc---cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCC
Q psy10504 143 ------KEIEVDKAP-----CVLEILDTAGTE---QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE 208 (286)
Q Consensus 143 ------~~~~~~~~~-----~~l~l~DtpG~~---~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~ 208 (286)
..+.++... -.+.++|.||-+ ........+..++|++|+|..+.+.-+..+ ++.+..... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~----~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSE----E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhc----c
Confidence 011111110 147789999955 556667788899999999999887543332 333333332 1
Q ss_pred CCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--------CCCEEEEeCCC
Q psy10504 209 RVPILLVANKLDLASHQREVPTLDGQALAQSW--------GCPFIEASAKN 251 (286)
Q Consensus 209 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~vSa~~ 251 (286)
+..+.|+-||+|...++++-....... ...+ .-.+++|||+.
T Consensus 261 KpniFIlnnkwDasase~ec~e~V~~Q-i~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 261 KPNIFILNNKWDASASEPECKEDVLKQ-IHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CCcEEEEechhhhhcccHHHHHHHHHH-HHhcCcccHhhhcCeeEEEeccc
Confidence 334556668889873333221111111 1122 23588999875
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.41 E-value=7.8e-07 Score=71.66 Aligned_cols=92 Identities=14% Similarity=0.127 Sum_probs=58.7
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 250 (286)
..+.++|++++|+|++++.... ...+...+.. ...++|+++|+||+|+.+. .. .......+.+.+...++.+||+
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~-~~~i~~~l~~--~~~~~p~ilVlNKiDl~~~-~~-~~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIFVLNKCDLVPT-WV-TARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred HhhhhCCEEEEEEECCCCcccc-CHHHHHHHHh--ccCCCCEEEEEEchhcCCH-HH-HHHHHHHHhcCCcEEEEEeecc
Confidence 3567899999999999874321 1222223322 2336899999999999622 11 1112222333222335789999
Q ss_pred CCCcHHHHHHHHHHHhh
Q psy10504 251 NKTNVNEMFAEIVREMN 267 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~ 267 (286)
++.|++++.+.+.+.+.
T Consensus 79 ~~~~~~~L~~~l~~~~~ 95 (157)
T cd01858 79 NPFGKGSLIQLLRQFSK 95 (157)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 99999999999987653
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.38 E-value=1.1e-06 Score=71.80 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred CCCcc-cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504 159 TAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237 (286)
Q Consensus 159 tpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 237 (286)
.|||- +........++++|.+++|+|++++....+. .+... ..++|+++|+||+|+.+ ... ........
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~------~~~k~~ilVlNK~Dl~~-~~~--~~~~~~~~ 71 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI------LGNKPRIIVLNKADLAD-PKK--TKKWLKYF 71 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH------hcCCCEEEEEehhhcCC-hHH--HHHHHHHH
Confidence 45543 3333446678899999999999876543221 11111 12579999999999962 111 11111222
Q ss_pred HhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
+..+..++.+||+++.|++++.+.+...++
T Consensus 72 ~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 72 ESKGEKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HhcCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 233456899999999999999999998764
No 350
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=1.5e-06 Score=69.80 Aligned_cols=84 Identities=15% Similarity=0.074 Sum_probs=55.6
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 256 (286)
|++++|+|++++.+.... ++.. ......++|+++|+||+|+.+. ... ......+....+.+++.+||+++.|++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~~~~p~IiVlNK~Dl~~~-~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~ 74 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKEKGKKLILVLNKADLVPK-EVL-RKWLAYLRHSYPTIPFKISATNGQGIE 74 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhcCCCCEEEEEechhcCCH-HHH-HHHHHHHHhhCCceEEEEeccCCcChh
Confidence 689999999987655432 2221 1112247899999999999621 110 111123333445678999999999999
Q ss_pred HHHHHHHHHh
Q psy10504 257 EMFAEIVREM 266 (286)
Q Consensus 257 ~l~~~i~~~i 266 (286)
++.+.+.+..
T Consensus 75 ~L~~~i~~~~ 84 (155)
T cd01849 75 KKESAFTKQT 84 (155)
T ss_pred hHHHHHHHHh
Confidence 9999987753
No 351
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.37 E-value=1.1e-06 Score=70.79 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=37.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
...+|+++|.+|+|||||+|++.+... ....++++.... .+..+ .. +.++||||.
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~liDtPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQ--YITLM-KR--IYLIDCPGV 157 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEE--EEEcC-CC--EEEEECcCC
Confidence 457899999999999999999998544 334444443222 22222 23 678999993
No 352
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.34 E-value=1.3e-06 Score=71.63 Aligned_cols=55 Identities=22% Similarity=0.286 Sum_probs=38.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
..++++++|.+|+|||||+|++.+... .+..++++...... ..+ .. +.++||||.
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~--~~~-~~--~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEV--HLD-KK--VKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEE--EeC-CC--EEEEECcCC
Confidence 458999999999999999999998544 33444454433332 232 23 789999993
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.34 E-value=1.7e-06 Score=76.42 Aligned_cols=101 Identities=17% Similarity=0.071 Sum_probs=66.8
Q ss_pred CCCccc-chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504 159 TAGTEQ-FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237 (286)
Q Consensus 159 tpG~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 237 (286)
.|||-. ........+..+|++++|+|+.++.+.++. . +.... .++|+++|+||+|+.+. .. ........
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~-i~~~l-----~~kp~IiVlNK~DL~~~-~~--~~~~~~~~ 73 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-M-IDEIR-----GNKPRLIVLNKADLADP-AV--TKQWLKYF 73 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-h-HHHHH-----CCCCEEEEEEccccCCH-HH--HHHHHHHH
Confidence 466642 223345677899999999999887554332 1 11111 26799999999999621 11 11111122
Q ss_pred HhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 238 QSWGCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
+..+.+++.+||+++.|++++.+.+.+.+++.
T Consensus 74 ~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 74 EEKGIKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 23456789999999999999999998887654
No 354
>KOG1547|consensus
Probab=98.32 E-value=4.5e-06 Score=70.45 Aligned_cols=142 Identities=19% Similarity=0.246 Sum_probs=78.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCC---------ccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccc--------
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFME---------KYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-------- 165 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~---------~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~-------- 165 (286)
.++|.++|.+|.|||||+|.+....+.. .++.|+. ...+..+.-++.+.+++++||||-.++
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 5899999999999999999998743322 1222222 122234556778888999999992211
Q ss_pred ----------h--------hhhhhcccC--ccEEEEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCC-
Q psy10504 166 ----------A--------SMRDLYIKN--GQGFVVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLAS- 223 (286)
Q Consensus 166 ----------~--------~~~~~~~~~--~d~vilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~- 223 (286)
. ..+...+.+ .+++++.+..+.. ++..+. ..+..+.+ -+.++-|+-|.|-..
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 1 112333444 4567777766653 222221 12222222 456788889999641
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 224 HQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
+++..-.+.++.-...+++.+++--+-+
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fd 227 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFD 227 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccc
Confidence 1111112223333445566666554444
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.30 E-value=1.8e-06 Score=70.61 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=38.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
...++++++|.+|+|||||+|++.+..+.. ..+.++... ..+.++ . .+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~--~~~~~~-~--~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGI--QWIKIS-P--GIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeee--EEEEec-C--CEEEEECCCC
Confidence 355899999999999999999999876532 223333322 223333 2 3789999994
No 356
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.30 E-value=2.6e-06 Score=77.39 Aligned_cols=83 Identities=17% Similarity=-0.015 Sum_probs=61.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch-
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA- 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~- 166 (286)
++++|+|.|++|||||++++.+... ...|+.++.+.....+.+.+.. ..+.+.|.||...-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998765 4567777666666666665532 357899999954321
Q ss_pred ------hhhhhcccCccEEEEEEECCC
Q psy10504 167 ------SMRDLYIKNGQGFVVVYSLTN 187 (286)
Q Consensus 167 ------~~~~~~~~~~d~vilv~d~~~ 187 (286)
...-..++.+|+++.|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 122334688999999999853
No 357
>KOG2655|consensus
Probab=98.28 E-value=9.7e-06 Score=72.97 Aligned_cols=114 Identities=22% Similarity=0.299 Sum_probs=69.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCc--------cCCCcc--ceEEEEEEECCeEEEEEEEeCCCccc-------ch
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK--------YDPTIE--DFYRKEIEVDKAPCVLEILDTAGTEQ-------FA 166 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--------~~~t~~--~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~ 166 (286)
.+.+.++|..|.|||||+|.|+...+... ....+. ......+.-+|....++++||||--+ |.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~ 100 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR 100 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence 48999999999999999999998644432 111111 22233445567888899999999221 11
Q ss_pred h------------------hhhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 167 S------------------MRDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 167 ~------------------~~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
. +.+.-+. ..|++++.+..+... +..+.- ..+.+ ....+.+|-|+-|+|..
T Consensus 101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di--~~Mk~--l~~~vNiIPVI~KaD~l 171 (366)
T KOG2655|consen 101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDI--EFMKK--LSKKVNLIPVIAKADTL 171 (366)
T ss_pred hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhH--HHHHH--HhccccccceeeccccC
Confidence 1 0111122 368888888876532 221111 11122 22378899999999986
No 358
>KOG1487|consensus
Probab=98.27 E-value=5.6e-06 Score=70.63 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=98.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-------hhhhcccCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-------MRDLYIKNG 176 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-------~~~~~~~~~ 176 (286)
-+|.++|-|.+||||++..+.+.. -++.|..|+-..+.....+.+.. +++.|.||..+-.. ......+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaK--iqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAK--IQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccc--eeeecCcchhcccccCCCCccEEEEEeecc
Confidence 489999999999999999998753 34556666555555666667766 89999999553221 233456789
Q ss_pred cEEEEEEECCCcccHHHHHH-HH-------------------------------------HHHHHHh-------------
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQ-MK-------------------------------------ELITRVK------------- 205 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~-~~-------------------------------------~~i~~~~------------- 205 (286)
+.+++|.|+-.|-+-..+-+ -+ ..+..++
T Consensus 138 nli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT 217 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDAT 217 (358)
T ss_pred cEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcc
Confidence 99999999987654332211 00 0001100
Q ss_pred --------CC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 206 --------GS--ERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 206 --------~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.. --+|.+.+.||+|..+ -. ++.-.+. ...+++||.++-|++++++.+-+.+.
T Consensus 218 ~DdLIdvVegnr~yVp~iyvLNkIdsIS-iE--------ELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 218 ADDLIDVVEGNRIYVPCIYVLNKIDSIS-IE--------ELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhhhccCceeeeeeeeecccceee-ee--------ccceeeeccceeecccccccchHHHHHHHhhcch
Confidence 00 1367788888888641 11 1111222 34689999999999999999888654
No 359
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.25 E-value=6.3e-05 Score=59.98 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=85.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCC-Ccccchh--------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA-GTEQFAS-------------- 167 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dtp-G~~~~~~-------------- 167 (286)
..+||.+.|+||+||||++.++.+..-... -..+.+....+.-++...-|.++|.. |...+-+
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g--~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V 81 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG--YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGV 81 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC--ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEe
Confidence 458999999999999999998876322222 23456667777788888888889887 4221100
Q ss_pred -----------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q psy10504 168 -----------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236 (286)
Q Consensus 168 -----------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 236 (286)
...+.++.||+ +++|--.+-.+. .+.....+... ...+.|+|.++.+.+.. + ..+.+
T Consensus 82 ~v~~le~i~~~al~rA~~~aDv--IIIDEIGpMElk-s~~f~~~ve~v-l~~~kpliatlHrrsr~---P-----~v~~i 149 (179)
T COG1618 82 NVEGLEEIAIPALRRALEEADV--IIIDEIGPMELK-SKKFREAVEEV-LKSGKPLIATLHRRSRH---P-----LVQRI 149 (179)
T ss_pred eHHHHHHHhHHHHHHHhhcCCE--EEEecccchhhc-cHHHHHHHHHH-hcCCCcEEEEEecccCC---h-----HHHHh
Confidence 01122334554 445644432221 11222222222 22378888888776532 1 22333
Q ss_pred HHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 237 ~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.. .+.-++. .+..|-+.++..|++.+..
T Consensus 150 k~-~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 150 KK-LGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hh-cCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 33 3333333 5677777999999888765
No 360
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.22 E-value=1.3e-06 Score=72.70 Aligned_cols=54 Identities=26% Similarity=0.297 Sum_probs=36.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC----------CCccCCCccceEEEEEEECCeEEEEEEEeCCC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF----------MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~----------~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG 161 (286)
+..+++++|.+|+|||||+|+|.+... .+..++|+.+... +..+. .+.++||||
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~~~---~~~~~DtPG 189 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPLGN---GKKLYDTPG 189 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--EecCC---CCEEEeCcC
Confidence 346899999999999999999997432 2233344443332 33332 268999999
No 361
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.21 E-value=3.9e-06 Score=74.50 Aligned_cols=102 Identities=18% Similarity=0.083 Sum_probs=67.7
Q ss_pred eCCCccc-chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH
Q psy10504 158 DTAGTEQ-FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL 236 (286)
Q Consensus 158 DtpG~~~-~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~ 236 (286)
-.|||-. -.......+..+|++++|+|++++.+.++. ++.... .++|+++|+||+|+.+. .. .......
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~-----~~kp~iiVlNK~DL~~~-~~--~~~~~~~ 75 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENP--MIDKII-----GNKPRLLILNKSDLADP-EV--TKKWIEY 75 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh-----CCCCEEEEEEchhcCCH-HH--HHHHHHH
Confidence 4677642 222345567899999999999887654331 112211 16899999999998621 11 1111222
Q ss_pred HHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 237 AQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 237 ~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
.+..+.+++.+||+++.|++++.+.+.+.+++.
T Consensus 76 ~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 76 FEEQGIKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHcCCeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 233467789999999999999999998887654
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.20 E-value=4e-06 Score=73.97 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=39.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
.+.++++++|.+|+|||||+|+|.+... +...++++... ..+..+. . +.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQ--QWIKLSD-G--LELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecce--EEEEeCC-C--EEEEECCCc
Confidence 3568999999999999999999998653 33344444332 3344432 2 789999996
No 363
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.19 E-value=5.2e-06 Score=66.64 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=36.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEE-EEECCeEEEEEEEeCCCc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKE-IEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~l~DtpG~ 162 (286)
...+++++|.+++||||+++++.+..... ..++.+...... +..++ .+.+|||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAS-TSPSPGYTKGEQLVKITS---KIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccc-cCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence 45789999999999999999999754322 222222222222 22222 3889999993
No 364
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.18 E-value=3.9e-06 Score=66.34 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=51.6
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
...+..+|++++|+|++++.+..+. .+...+... .+++|+++|+||+|+.+ ... ........+..+.+++++||
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~--~~~k~~iivlNK~DL~~-~~~--~~~~~~~~~~~~~~ii~iSa 79 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEV--DPRKKNILLLNKADLLT-EEQ--RKAWAEYFKKEGIVVVFFSA 79 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhc--cCCCcEEEEEechhcCC-HHH--HHHHHHHHHhcCCeEEEEEe
Confidence 3457889999999999987654421 222222221 14789999999999862 111 22333444455678999999
Q ss_pred CCCCc
Q psy10504 250 KNKTN 254 (286)
Q Consensus 250 ~~~~g 254 (286)
+++.+
T Consensus 80 ~~~~~ 84 (141)
T cd01857 80 LKENA 84 (141)
T ss_pred cCCCc
Confidence 98764
No 365
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.17 E-value=6.1e-06 Score=73.22 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=39.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
...++++++|.+|+|||||+|+|.+... +...++++... ..+..+. . +.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~--~~~~~~~-~--~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQ--QWIKLGK-G--LELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEE--EEEEeCC-c--EEEEECCCcC
Confidence 3568999999999999999999998654 23333443332 2333332 3 7799999964
No 366
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.14 E-value=2.4e-05 Score=73.39 Aligned_cols=110 Identities=20% Similarity=0.233 Sum_probs=71.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+.++-|+++|+||.|||||++.|...-- ..|+.+.......+.++...++|+++|. +...+ ....+-+|.|++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~t----k~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~m-iDvaKIaDLVlL 139 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFT----KQTIDEIRGPITVVSGKTRRITFLECPS--DLHQM-IDVAKIADLVLL 139 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHH----HhhhhccCCceEEeecceeEEEEEeChH--HHHHH-HhHHHhhheeEE
Confidence 3567889999999999999998876311 1122122222223456667799999993 23333 234567999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCC
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLAS 223 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~ 223 (286)
++|.+=+-..+.+.. ++.+.. + +.| ++-|+|+.|+..
T Consensus 140 lIdgnfGfEMETmEF-Lnil~~-H---GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 140 LIDGNFGFEMETMEF-LNILIS-H---GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred EeccccCceehHHHH-HHHHhh-c---CCCceEEEEeeccccc
Confidence 999987766666654 333333 2 555 566789999973
No 367
>KOG1491|consensus
Probab=98.11 E-value=6.2e-06 Score=72.92 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=62.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC---------------eEEEEEEEeCCCcccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK---------------APCVLEILDTAGTEQF 165 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~---------------~~~~l~l~DtpG~~~~ 165 (286)
.+.++++|+|.|++|||||+|.+..... ...++.++.+.....+.+.. ....++++|++|.-.-
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 3678999999999999999999998654 56677777766666655543 2346899999984432
Q ss_pred ----hhhhhh---cccCccEEEEEEECCC
Q psy10504 166 ----ASMRDL---YIKNGQGFVVVYSLTN 187 (286)
Q Consensus 166 ----~~~~~~---~~~~~d~vilv~d~~~ 187 (286)
..+-.. -++.+|+++-|+++.+
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEecC
Confidence 223333 3577999999998764
No 368
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.11 E-value=7.1e-05 Score=68.44 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=93.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC-----------------CCccCC-C---cc----ceEEEEEEE-CCeEEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF-----------------MEKYDP-T---IE----DFYRKEIEV-DKAPCVLEIL 157 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~-----------------~~~~~~-t---~~----~~~~~~~~~-~~~~~~l~l~ 157 (286)
.+=++++|+..+|||||+.+|....+ +.+..+ | ++ ......+.+ ++..++++++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 46799999999999999999987221 111111 1 11 111233444 5778889999
Q ss_pred eCCC--------ccc-----chhh-h---------------hhcc--cCccEEEEEEECCC----cccHHHHHH-HHHHH
Q psy10504 158 DTAG--------TEQ-----FASM-R---------------DLYI--KNGQGFVVVYSLTN----HHTFQDIKQ-MKELI 201 (286)
Q Consensus 158 DtpG--------~~~-----~~~~-~---------------~~~~--~~~d~vilv~d~~~----~~s~~~~~~-~~~~i 201 (286)
|+-| +.+ +-.. | +..+ +.+=++++.-|.+= ++.+.+... ....+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9998 110 0000 0 0111 22446666666542 233333332 34455
Q ss_pred HHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC--CCcHHHHHHHHHHH
Q psy10504 202 TRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN--KTNVNEMFAEIVRE 265 (286)
Q Consensus 202 ~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~--~~gv~~l~~~i~~~ 265 (286)
... ++|+++++|-.+- ...........+.++++++++.+++.+ .+.+..+++.++..
T Consensus 177 k~i----gKPFvillNs~~P---~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLyE 235 (492)
T PF09547_consen 177 KEI----GKPFVILLNSTKP---YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLYE 235 (492)
T ss_pred HHh----CCCEEEEEeCCCC---CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHhc
Confidence 543 8899999998763 233345667888899999999998875 45666666666553
No 369
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.11 E-value=8.9e-06 Score=65.34 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=39.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
...+++++|.+|+|||||+|++.+... .+..++++.+..... .+ .. +.++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~--~~-~~--~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVK--LD-NK--IKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEE--ec-CC--EEEEECCCC
Confidence 568899999999999999999998653 334455555544432 22 22 789999993
No 370
>KOG0469|consensus
Probab=98.11 E-value=7.2e-06 Score=75.79 Aligned_cols=113 Identities=24% Similarity=0.292 Sum_probs=75.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc-CCC-ccCC------CccceEEE-----------------------EEEECCeEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC-FME-KYDP------TIEDFYRK-----------------------EIEVDKAPCV 153 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~-~~~-~~~~------t~~~~~~~-----------------------~~~~~~~~~~ 153 (286)
-++-++.|.++|||||.+.|.... +.+ ...+ |-.+.... +-.-++..+.
T Consensus 20 RNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FL 99 (842)
T KOG0469|consen 20 RNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFL 99 (842)
T ss_pred ccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCccee
Confidence 456789999999999999987621 111 1111 11111000 0011345677
Q ss_pred EEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 154 l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+.++|.|||-+|.+-....++.+|+.++|+|.-++.-.+.-.-+.+.+.. .+.-+++.||.|..
T Consensus 100 iNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E-----RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 100 INLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE-----RIKPVLVMNKMDRA 163 (842)
T ss_pred EEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh-----hccceEEeehhhHH
Confidence 89999999999999999999999999999999987655444434444444 33337788999964
No 371
>KOG0085|consensus
Probab=98.10 E-value=2.5e-06 Score=71.63 Aligned_cols=120 Identities=13% Similarity=0.133 Sum_probs=81.8
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPILLVANKLD 220 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 220 (286)
.+.|.++|.+|+..-+.-|.+.+.+.-.++++++.+. ....++.+.++..+..+.-..+.++|+..||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 3458899999999888888888777766666665543 334555556666666655556889999999999
Q ss_pred CCCCC---------------CCCCHHHHHHHHHhc----C------CCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 221 LASHQ---------------REVPTLDGQALAQSW----G------CPFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 221 l~~~~---------------~~~~~~~~~~~~~~~----~------~~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+.++. +..+......+...+ + +--.++.|.+.+|++-+|.++.+.+.+..
T Consensus 278 lLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 278 LLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 86321 223333444443332 1 11356788899999999999999887654
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.06 E-value=5.3e-05 Score=68.12 Aligned_cols=94 Identities=16% Similarity=0.118 Sum_probs=56.3
Q ss_pred EEEEEEeCCCcccchh-----h---hh---h-cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504 152 CVLEILDTAGTEQFAS-----M---RD---L-YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-----~---~~---~-~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 219 (286)
+.+.++||||...... + .. . .-...+..++|+|++.+ .+.+.+. ...... --+.-+|+||.
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~a-~~f~~~----~~~~giIlTKl 269 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQA-KAFHEA----VGLTGIILTKL 269 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHHH-HHHHhh----CCCCEEEEECC
Confidence 4588999999653222 1 11 1 11346789999999853 2333332 222111 12447889999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 220 Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
|.. .+ .-.........+.|+..++ +|++++++-
T Consensus 270 D~t--~~---~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGT--AK---GGVVFAIADELGIPIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCC--CC---ccHHHHHHHHHCCCEEEEe--CCCChhhCc
Confidence 964 22 1234455567799999998 888887763
No 373
>PRK13796 GTPase YqeH; Provisional
Probab=98.03 E-value=3.4e-05 Score=70.74 Aligned_cols=94 Identities=20% Similarity=0.211 Sum_probs=61.8
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHHHHh
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QALAQS 239 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~~~ 239 (286)
.|.......-...+.+++|+|+.|.. ..|...+.+.. .+.|+++|+||+|+.+. ....... ....+.
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~~--~~~~~~i~~~l~~~~k~ 128 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLPK--SVKKNKVKNWLRQEAKE 128 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCCC--ccCHHHHHHHHHHHHHh
Confidence 45554444333344999999998853 23444444432 26799999999999632 2222222 233455
Q ss_pred cCC---CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 240 WGC---PFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 240 ~~~---~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
.++ .++.+||+++.|++++++.|.+..
T Consensus 129 ~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 129 LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 565 689999999999999999997753
No 374
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.02 E-value=1.2e-05 Score=72.48 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=39.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
.+..++.++|-||+|||||+|+|.+... ++..++++.... .+..+.. +.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q--~i~~~~~---i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQ--WIKLDDG---IYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceE--EEEcCCC---eEEecCCCcC
Confidence 3558899999999999999999999655 333444433322 2333333 6789999954
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.01 E-value=3.8e-05 Score=67.53 Aligned_cols=94 Identities=14% Similarity=0.054 Sum_probs=57.0
Q ss_pred EEEEEEeCCCcccchhhhh-------hc-----ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504 152 CVLEILDTAGTEQFASMRD-------LY-----IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~-------~~-----~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 219 (286)
+.+.++||||....+.... .. -...|.+++|+|++.+ .+.+... ..+.+.. -+.-++.||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~-~~f~~~~----~~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQA-KVFNEAV----GLTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHH-HHHHhhC----CCCEEEEEcc
Confidence 4588999999654332211 11 1248999999999743 3333332 2222211 1457889999
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 220 Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
|... + .-.........+.|+..++ +|++++++.
T Consensus 228 De~~--~---~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTA--K---GGIILSIAYELKLPIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCC--C---ccHHHHHHHHHCcCEEEEe--CCCChHhCc
Confidence 9752 1 1234445556689999888 888887663
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.01 E-value=6.7e-06 Score=66.23 Aligned_cols=59 Identities=25% Similarity=0.300 Sum_probs=34.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCc-------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEK-------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
-.++++|++|||||||+|.|........ ..+.-++.....+.+++.. .++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 4789999999999999999998632111 1111112223445554443 479999965544
No 377
>PRK01889 GTPase RsgA; Reviewed
Probab=98.00 E-value=2.9e-05 Score=70.94 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=58.8
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAK 250 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~ 250 (286)
...+.|.+++|++++.+-....+..++..... .++|.++|+||+|+.+. . ....+.+.. ..+.+++.+|++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~-~---~~~~~~~~~~~~g~~Vi~vSa~ 180 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCED-A---EEKIAEVEALAPGVPVLAVSAL 180 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCC-H---HHHHHHHHHhCCCCcEEEEECC
Confidence 46889999999999754444455555554444 27788999999999732 1 111122222 456899999999
Q ss_pred CCCcHHHHHHHHH
Q psy10504 251 NKTNVNEMFAEIV 263 (286)
Q Consensus 251 ~~~gv~~l~~~i~ 263 (286)
++.|++++.+++.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999988874
No 378
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.99 E-value=5.7e-05 Score=70.19 Aligned_cols=94 Identities=11% Similarity=0.080 Sum_probs=53.1
Q ss_pred EEEEEEEeCCCcccchh-hhh---hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFAS-MRD---LY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~-~~~---~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
.+.+.|+||||...... +.. .+ ....+-++||+|+.-+....+ ....+... --+--+++||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~---~a~~F~~~----~~~~g~IlTKlD~~a- 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA---QAKAFKDS----VDVGSVIITKLDGHA- 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH---HHHHHHhc----cCCcEEEEECccCCC-
Confidence 35688999999554332 111 11 234678999999876532222 22222221 125678899999751
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
.. -.........+.|+.+++ +|+.++++
T Consensus 254 rg----G~aLs~~~~t~~PI~fig--~Ge~v~Dl 281 (429)
T TIGR01425 254 KG----GGALSAVAATKSPIIFIG--TGEHIDDF 281 (429)
T ss_pred Cc----cHHhhhHHHHCCCeEEEc--CCCChhhc
Confidence 11 123445556677777776 55555553
No 379
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.95 E-value=3.3e-05 Score=80.77 Aligned_cols=113 Identities=24% Similarity=0.193 Sum_probs=66.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCcc------CCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKY------DPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRD 170 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~ 170 (286)
+=.+|+|++|+||||++..- +-.++-.. ..+.+......+-+.+. -.++||+|.. .....|.
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~---avliDtaG~y~~~~~~~~~~~~~W~ 187 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDE---AVLIDTAGRYTTQDSDPEEDAAAWL 187 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCC---EEEEcCCCccccCCCcccccHHHHH
Confidence 34689999999999999877 32232111 11111111222333333 3489999922 1222344
Q ss_pred hcc---------cCccEEEEEEECCCccc--H-------HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 171 LYI---------KNGQGFVVVYSLTNHHT--F-------QDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 171 ~~~---------~~~d~vilv~d~~~~~s--~-------~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.++ +-.+|+|+++|+++--. - ..++..+.++...- ....||.|++||+|+.
T Consensus 188 ~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 188 GFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLL 256 (1169)
T ss_pred HHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhh
Confidence 433 34799999999986321 1 23344445555432 2389999999999986
No 380
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.92 E-value=5e-05 Score=64.93 Aligned_cols=86 Identities=19% Similarity=0.126 Sum_probs=53.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc--cCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchh------hhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK--YDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFAS------MRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~--~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~------~~~~ 171 (286)
+-.-|+|+|++++|||+|+|++.+. .|... ..+++........... +....+.++||+|...... ....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~ 85 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLF 85 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHH
Confidence 3456889999999999999999998 55432 2344433332222221 1234588999999653322 1222
Q ss_pred cccC--ccEEEEEEECCCc
Q psy10504 172 YIKN--GQGFVVVYSLTNH 188 (286)
Q Consensus 172 ~~~~--~d~vilv~d~~~~ 188 (286)
.+.. ++.+|+..+.+..
T Consensus 86 ~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 86 ALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHhCEEEEeccCccc
Confidence 3333 7888888887653
No 381
>KOG0447|consensus
Probab=97.91 E-value=0.00022 Score=66.90 Aligned_cols=69 Identities=14% Similarity=0.234 Sum_probs=45.0
Q ss_pred EEEEEeCCCcc-------------cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504 153 VLEILDTAGTE-------------QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219 (286)
Q Consensus 153 ~l~l~DtpG~~-------------~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 219 (286)
.+.++|.||.. ....+...|..+.+++|+|+--.. .+.-+.....+-......+...|+|.||.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGS---VDAERSnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGS---VDAERSIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCC---cchhhhhHHHHHHhcCCCCCeeEEEEeec
Confidence 37799999932 223366788999999999985322 22222223333333344478899999999
Q ss_pred CCCCC
Q psy10504 220 DLASH 224 (286)
Q Consensus 220 Dl~~~ 224 (286)
|+.+.
T Consensus 490 DlAEk 494 (980)
T KOG0447|consen 490 DLAEK 494 (980)
T ss_pred chhhh
Confidence 99743
No 382
>PRK12288 GTPase RsgA; Reviewed
Probab=97.89 E-value=1.5e-05 Score=72.51 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=36.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC--ccCCC--c---cceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFME--KYDPT--I---EDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t--~---~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
.++|+|.+|||||||+|+|.+..... ..... . ++.....+.+++.. .++||||...+.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 37899999999999999999753321 11110 0 11122334444332 389999987655
No 383
>PRK13695 putative NTPase; Provisional
Probab=97.88 E-value=0.00026 Score=57.91 Aligned_cols=78 Identities=10% Similarity=0.146 Sum_probs=46.5
Q ss_pred cccCccEEEEEEEC---CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504 172 YIKNGQGFVVVYSL---TNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 172 ~~~~~d~vilv~d~---~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vS 248 (286)
.+..++. +++|= .+..+ ..+...+.... ..+.|++++.+|.... .....+....+..++++
T Consensus 93 ~l~~~~~--lllDE~~~~e~~~----~~~~~~l~~~~-~~~~~~i~v~h~~~~~--------~~~~~i~~~~~~~i~~~- 156 (174)
T PRK13695 93 ALEEADV--IIIDEIGKMELKS----PKFVKAVEEVL-DSEKPVIATLHRRSVH--------PFVQEIKSRPGGRVYEL- 156 (174)
T ss_pred ccCCCCE--EEEECCCcchhhh----HHHHHHHHHHH-hCCCeEEEEECchhhH--------HHHHHHhccCCcEEEEE-
Confidence 3455666 67773 22221 22333333332 3478999999985432 23444555566777777
Q ss_pred CCCCCcHHHHHHHHHHHhh
Q psy10504 249 AKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~ 267 (286)
+.+|-+++...|.+.++
T Consensus 157 --~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 --TPENRDSLPFEILNRLK 173 (174)
T ss_pred --cchhhhhHHHHHHHHHh
Confidence 66777889998888765
No 384
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.87 E-value=7.3e-05 Score=60.35 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=36.8
Q ss_pred EEEEEEeCCCcccchhhhhh--------cccCccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDL--------YIKNGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~--------~~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
....++||||..+-..+... ..-..+.++.++|+...... ++...+...+.. -=++++||+|+
T Consensus 87 ~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~-------ad~ivlnk~dl 158 (158)
T cd03112 87 FDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF-------ADRILLNKTDL 158 (158)
T ss_pred CCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH-------CCEEEEecccC
Confidence 45678999997644433322 22347889999998653321 122222333333 12778999996
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.87 E-value=6.6e-05 Score=67.85 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=54.9
Q ss_pred EEEEEEeCCCcccchh-hh---hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MR---DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~---~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||+|...... +. ..+ ....|.+++|+|+..+. +.......+... -+ .--+++||.|.....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~---~~-~~giIlTKlD~~~~~ 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA---VG-IDGVILTKVDADAKG 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc---CC-CCEEEEeeecCCCCc
Confidence 3488999999653222 11 111 12478899999997643 221111222211 12 346788999975211
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
-....+....+.|+..++ +|++++++.
T Consensus 296 -----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 296 -----GAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred -----cHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 123444555789998887 799998764
No 386
>PRK12289 GTPase RsgA; Reviewed
Probab=97.84 E-value=3.1e-05 Score=70.51 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=35.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCC--CccCC-------CccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFM--EKYDP-------TIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~-------t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
.++|+|.+|||||||+|+|.+.... ..... |++. ...+...+.. .++||||...+
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~--~~l~~l~~g~---~liDTPG~~~~ 237 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRH--VELFELPNGG---LLADTPGFNQP 237 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCce--eEEEECCCCc---EEEeCCCcccc
Confidence 4899999999999999999975332 11111 2322 2334443332 48999996543
No 387
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00011 Score=67.33 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=74.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC-cc-C-C-CccceE---------------EEEEE-E-C----------CeE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KY-D-P-TIEDFY---------------RKEIE-V-D----------KAP 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~-~-~-t~~~~~---------------~~~~~-~-~----------~~~ 151 (286)
+.-.++++|++|+||||++.+|....... .. . . .+.+.. ...+. . . -..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34578899999999999999887532110 00 0 0 000000 00000 0 0 012
Q ss_pred EEEEEEeCCCcccchhhh----hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC----CcEEEEEeCCCC
Q psy10504 152 CVLEILDTAGTEQFASMR----DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER----VPILLVANKLDL 221 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~----~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~----~piivv~nK~Dl 221 (286)
+.+.++||+|...++... ..+ .....-.++|++++... +.+.+....+......+. -+-=+++||.|.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~--~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHG--DTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccCh--HHHHHHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 358899999966443321 111 12344568899887632 223332333332211111 123577799997
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
.. ..-....+....+.|+..++ +|++|.+
T Consensus 294 t~-----~~G~~l~~~~~~~lPi~yvt--~Gq~VPe 322 (374)
T PRK14722 294 AS-----NLGGVLDTVIRYKLPVHYVS--TGQKVPE 322 (374)
T ss_pred CC-----CccHHHHHHHHHCcCeEEEe--cCCCCCc
Confidence 52 22345556667788877776 5555443
No 388
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.80 E-value=3.2e-05 Score=70.87 Aligned_cols=55 Identities=29% Similarity=0.376 Sum_probs=37.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc-------CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC-------FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
.++.++|.+|||||||+|++.+.. ..+..++|+.+.. .+..++. +.++||||...
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~~~---~~l~DtPG~~~ 216 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLDDG---HSLYDTPGIIN 216 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeCCC---CEEEECCCCCC
Confidence 589999999999999999999742 2334455544433 2333222 56899999653
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.79 E-value=0.0002 Score=67.95 Aligned_cols=139 Identities=17% Similarity=0.167 Sum_probs=74.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC----------CC--ccCCCc-c------ceEEEEEEE-C-----------CeE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF----------ME--KYDPTI-E------DFYRKEIEV-D-----------KAP 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~----------~~--~~~~t~-~------~~~~~~~~~-~-----------~~~ 151 (286)
..-.++|+|+.|+||||++..|..... .. .+.... . ......+.. . -..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 356789999999999999888864210 00 011000 0 000000111 0 023
Q ss_pred EEEEEEeCCCcccchhhhhh---cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDL---YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~---~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
+.+.|+||+|....+..... .+ ......++|++.+. +..++...+..+.. ..+.-+|+||.|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt---- 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDET---- 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCc----
Confidence 45889999996533321110 01 01234677777764 34444444333333 23677999999974
Q ss_pred CCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 227 EVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
...-.........+.|+..++ +|+.+
T Consensus 498 -~~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 498 -GRFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred -cchhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 122345556667788888776 66666
No 390
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.79 E-value=4.1e-05 Score=67.38 Aligned_cols=58 Identities=26% Similarity=0.269 Sum_probs=37.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC------CCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF------MEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~------~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
..+++|.+|||||||+|+|..... .... .+.-++.....+.+++.. .++||||...+.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence 678999999999999999987322 1111 122223345556675333 279999977654
No 391
>KOG0099|consensus
Probab=97.79 E-value=6.2e-05 Score=64.42 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=51.1
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-------c---HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-------T---FQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-------s---~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
++|+.+|.+||.+-+.-|...+.+..++|+|++.+.-. + +++...++..+...+-...+.+|+..||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 34899999999999999999999999999999987521 2 2222223333332222236789999999997
Q ss_pred C
Q psy10504 222 A 222 (286)
Q Consensus 222 ~ 222 (286)
.
T Consensus 282 l 282 (379)
T KOG0099|consen 282 L 282 (379)
T ss_pred H
Confidence 4
No 392
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.79 E-value=4.5e-05 Score=66.13 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=36.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCC--c-------cCCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFME--K-------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~--~-------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
-.++++|.+|+|||||+|+|.+..... . ...|+..... +...+. .++||||...+.
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~~----~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHGG----LIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCCc----EEEeCCCccccC
Confidence 468999999999999999999853221 1 1223333322 333332 489999976543
No 393
>PRK13796 GTPase YqeH; Provisional
Probab=97.75 E-value=4.2e-05 Score=70.18 Aligned_cols=54 Identities=28% Similarity=0.345 Sum_probs=37.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc------C-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC------F-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~------~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
.++.++|.+|||||||+|+|.... . .+..++|+.+... +.+++. ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEcCCC---cEEEECCCcc
Confidence 479999999999999999998532 1 3445555554433 333333 3589999964
No 394
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.65 E-value=5e-05 Score=67.41 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=36.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCc--c-------CCCccceEEEEEEECCeEEEEEEEeCCCcccch
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEK--Y-------DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~-------~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~ 166 (286)
-.++++|++|+|||||+|.|.+...... . ..|+. ....+...+. ..++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~--~~~~~~~~~~---~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTT--HRELFPLPGG---GLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccc--eEEEEEcCCC---CEEEECCCCCccC
Confidence 5799999999999999999998533221 1 11221 2233444432 2489999986654
No 395
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.63 E-value=0.00039 Score=65.06 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=52.4
Q ss_pred EEEEEeCCCcccchhh-----hh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCC
Q psy10504 153 VLEILDTAGTEQFASM-----RD-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQ 225 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~-----~~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 225 (286)
.+.++||||....... .. ..+..+|.+++|+|++... +.......+.. .++ .-+|.||.|.. .
T Consensus 177 DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~-----~l~i~gvIlTKlD~~--a 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHE-----AVGIGGIIITKLDGT--A 246 (437)
T ss_pred CEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHh-----cCCCCEEEEecccCC--C
Confidence 5889999996543321 11 1134578999999987652 22222222222 233 35778999975 1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
+ .-.+.......+.|+.+++ +|+.+++
T Consensus 247 ~---~G~~ls~~~~~~~Pi~fig--~Ge~v~D 273 (437)
T PRK00771 247 K---GGGALSAVAETGAPIKFIG--TGEKIDD 273 (437)
T ss_pred c---ccHHHHHHHHHCcCEEEEe--cCCCccc
Confidence 1 1234556667788888776 4555544
No 396
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0004 Score=64.50 Aligned_cols=137 Identities=14% Similarity=0.112 Sum_probs=73.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC------------ccCCCcc-------ceEEEEE--------------EECC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME------------KYDPTIE-------DFYRKEI--------------EVDK 149 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------~~~~t~~-------~~~~~~~--------------~~~~ 149 (286)
..-.++++|+.|+||||++..|....... .+..... +.....+ ...+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34589999999999999998776521100 0000000 0000000 0112
Q ss_pred eEEEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
..+.++||+|....... ...+. ....-.+||+|++.. .+.+.++...... --.-=+++||.|-..
T Consensus 270 --~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~ 340 (420)
T PRK14721 270 --KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAA 340 (420)
T ss_pred --CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCC
Confidence 24789999996543221 11121 224467889998743 2233333222221 113357789999752
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
..-....+....+.|+..++ +|.++
T Consensus 341 -----~~G~~l~~~~~~~lPi~yvt--~Gq~V 365 (420)
T PRK14721 341 -----SLGIALDAVIRRKLVLHYVT--NGQKV 365 (420)
T ss_pred -----CccHHHHHHHHhCCCEEEEE--CCCCc
Confidence 22345566677788888776 67766
No 397
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.60 E-value=0.0019 Score=52.84 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=59.5
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP 229 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~ 229 (286)
..+.+.++|||+... ......+..+|.+++++..+. .+...+..++..+... +.|+.+|+||.|... . .
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~--~--~ 159 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF----GIPVGVVINKYDLND--E--I 159 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCc--c--h
Confidence 345689999997542 233455688999999999874 4667777776666542 568899999999652 1 2
Q ss_pred HHHHHHHHHhcCCCEEE
Q psy10504 230 TLDGQALAQSWGCPFIE 246 (286)
Q Consensus 230 ~~~~~~~~~~~~~~~~~ 246 (286)
..+...+.+..+++++.
T Consensus 160 ~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 160 AEEIEDYCEEEGIPILG 176 (179)
T ss_pred HHHHHHHHHHcCCCeEE
Confidence 34556667777877653
No 398
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.00047 Score=60.76 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=64.8
Q ss_pred hhhhhcccCccEEEEEEECCCccc-HHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEE
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHT-FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI 245 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 245 (286)
.+.+.-..+.|-+++|+.+.+|+- ..-+..++-.... .++.-+|++||+|+.++..... .+.......++.+++
T Consensus 71 ~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~-~~~~~~y~~~gy~v~ 145 (301)
T COG1162 71 VLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAV-KELLREYEDIGYPVL 145 (301)
T ss_pred ceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHH-HHHHHHHHhCCeeEE
Confidence 344444555777888888888763 3333333333333 3777788899999984333222 456667778899999
Q ss_pred EEeCCCCCcHHHHHHHHHHH
Q psy10504 246 EASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~ 265 (286)
.+|++++.|++++.+.+...
T Consensus 146 ~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 146 FVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred EecCcCcccHHHHHHHhcCC
Confidence 99999999999998877654
No 399
>KOG1424|consensus
Probab=97.55 E-value=0.00011 Score=68.41 Aligned_cols=55 Identities=18% Similarity=0.148 Sum_probs=39.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCC--ccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFME--KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
.+.|+++|-|||||||+||+|.+.+.++ ..++.+..+.+..+. .. +.+.|+||.-
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--~~---v~LCDCPGLV 370 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--PS---VCLCDCPGLV 370 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--CC---ceecCCCCcc
Confidence 5899999999999999999999987654 334444444444332 22 6789999943
No 400
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.53 E-value=0.00034 Score=55.82 Aligned_cols=58 Identities=26% Similarity=0.193 Sum_probs=34.9
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 220 (286)
.+.+.++||+|.... ...++..+|-++++...+-.+.+.-++ ..+. ..-=++++||.|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGIM------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhHh------hhcCEEEEeCCC
Confidence 356889999995422 234888899998888766222111111 1111 122388899998
No 401
>PRK00098 GTPase RsgA; Reviewed
Probab=97.53 E-value=0.0002 Score=63.96 Aligned_cols=57 Identities=23% Similarity=0.262 Sum_probs=35.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCc--cC-------CCccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK--YD-------PTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~-------~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
...++++|.+|+|||||+|+|.+...... .. .|+. ....+..++. ..++||||...+
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~--~~~~~~~~~~---~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTT--HVELYDLPGG---GLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccc--cEEEEEcCCC---cEEEECCCcCcc
Confidence 34689999999999999999987533211 11 1221 1223333333 357999997543
No 402
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.51 E-value=0.0018 Score=58.19 Aligned_cols=145 Identities=21% Similarity=0.214 Sum_probs=77.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCc------------cC--CCccceEEEEEEECCeE--------------------
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEK------------YD--PTIEDFYRKEIEVDKAP-------------------- 151 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~------------~~--~t~~~~~~~~~~~~~~~-------------------- 151 (286)
..++-|-=|||||||++.++.+.--.. .. ....+.....+...++.
T Consensus 3 VtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~ 82 (323)
T COG0523 3 VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRR 82 (323)
T ss_pred EEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhcc
Confidence 456889999999999999987432100 00 00111111112221111
Q ss_pred --EEEEEEeCCCcccchhhhhhccc--------CccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504 152 --CVLEILDTAGTEQFASMRDLYIK--------NGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLD 220 (286)
Q Consensus 152 --~~l~l~DtpG~~~~~~~~~~~~~--------~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~D 220 (286)
+...++.|.|...-.+....+.. ..|+++-|+|+..-..... .......-... -=+|++||.|
T Consensus 83 ~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~D 156 (323)
T COG0523 83 DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTD 156 (323)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEeccc
Confidence 34567888887655444333332 2578999999987443222 22222222221 2288999999
Q ss_pred CCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHH
Q psy10504 221 LASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~ 260 (286)
+.++. . ....+...+..+ .+++.+|. .+.+..+++.
T Consensus 157 lv~~~-~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 157 LVDAE-E--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred CCCHH-H--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 98433 2 333333444433 77888876 3445544444
No 403
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.49 E-value=0.00054 Score=62.66 Aligned_cols=150 Identities=24% Similarity=0.309 Sum_probs=79.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc----ceEE---------------E--EEEEC----------CeEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE----DFYR---------------K--EIEVD----------KAPC 152 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~----~~~~---------------~--~~~~~----------~~~~ 152 (286)
.-.|+++|+.||||||-+-.|...-.-......++ |.+. . .+... -..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55789999999999999877765322111111111 0000 0 00000 1223
Q ss_pred EEEEEeCCCcccchhhh----hhcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCCC
Q psy10504 153 VLEILDTAGTEQFASMR----DLYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASHQ 225 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~----~~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~~ 225 (286)
.+.|+||.|...++... ..++.. ..-+.||++++.. .++++..+..+.. +|+ -+++||.|-.
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~------~~i~~~I~TKlDET--- 351 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSL------FPIDGLIFTKLDET--- 351 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhcc------CCcceeEEEccccc---
Confidence 58899999977666532 223322 2346677777653 3445444444333 233 4667999965
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH-H----HHHHHHHhhc
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE-M----FAEIVREMNF 268 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~-l----~~~i~~~i~~ 268 (286)
...-..-.+....+.|+..++ +|++|.+ + -+++++.+.+
T Consensus 352 --~s~G~~~s~~~e~~~PV~YvT--~GQ~VPeDI~va~~~~Lv~~~~g 395 (407)
T COG1419 352 --TSLGNLFSLMYETRLPVSYVT--NGQRVPEDIVVANPDYLVRRILG 395 (407)
T ss_pred --CchhHHHHHHHHhCCCeEEEe--CCCCCCchhhhcChHHHHHHHhc
Confidence 223334455556677766665 5655432 2 2355555543
No 404
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.49 E-value=0.00037 Score=63.89 Aligned_cols=140 Identities=16% Similarity=0.125 Sum_probs=74.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCC---------C-ccC-CCcc---c---eEEEEEE--E------------C-CeE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFM---------E-KYD-PTIE---D---FYRKEIE--V------------D-KAP 151 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~---------~-~~~-~t~~---~---~~~~~~~--~------------~-~~~ 151 (286)
...|+++|+.|+||||++..|...... . .+. .... . .....+. . . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 357999999999999999988641110 0 000 0000 0 0000010 0 0 012
Q ss_pred EEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.|+||+|....... ...++ ...+.++||+|++-. .+++......+.. . + .-=+++||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~---~-~-idglI~TKLDET~-- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD---I-H-IDGIVFTKFDETA-- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC---C-C-CCEEEEEcccCCC--
Confidence 45889999996532221 11222 235678899887543 2233333333322 1 1 2357789999752
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
..-.+..+....+.|+..++ +|+++.+
T Consensus 392 ---k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 392 ---SSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred ---CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 12345566777888887776 5665543
No 405
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.48 E-value=0.00036 Score=56.87 Aligned_cols=135 Identities=16% Similarity=0.293 Sum_probs=68.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeC-CCccc--------------------
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT-AGTEQ-------------------- 164 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt-pG~~~-------------------- 164 (286)
+|.+.|++|+|||||+.+++...-... -....+.+..+..++..+-|.+.|. .|.+.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~--~~v~Gf~t~evr~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v~~ 78 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKG--LPVGGFYTEEVRENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFVDL 78 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTC--GGEEEEEEEEEETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE-H
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccC--CccceEEeecccCCCceEEEEEEECcCCCccccccccccccccCCCEEEcH
Confidence 689999999999999999886321111 1222344444555666666677776 33211
Q ss_pred --chhhhhhcc----cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC-CCCCCCCCCCHHHHHHHH
Q psy10504 165 --FASMRDLYI----KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL-DLASHQREVPTLDGQALA 237 (286)
Q Consensus 165 --~~~~~~~~~----~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~-Dl~~~~~~~~~~~~~~~~ 237 (286)
|.......+ ..+| ++++|=-.+-.+. ...+...+...-. +++|++.++-+. +.+ -.+.+.
T Consensus 79 e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~-s~~~vi~vv~~~~~~~---------~l~~i~ 145 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLD-SNKPVIGVVHKRSDNP---------FLEEIK 145 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHC-TTSEEEEE--SS--SC---------CHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHc-CCCcEEEEEecCCCcH---------HHHHHH
Confidence 111111112 2344 7777743321111 1223444444333 578988888776 432 345667
Q ss_pred HhcCCCEEEEeCCCCCcH
Q psy10504 238 QSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 238 ~~~~~~~~~vSa~~~~gv 255 (286)
...++.+++++..+.+-+
T Consensus 146 ~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 146 RRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTTSEEEE--TTTCCCH
T ss_pred hCCCcEEEEeChhHHhhH
Confidence 777788898876665544
No 406
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.48 E-value=0.00024 Score=59.42 Aligned_cols=92 Identities=22% Similarity=0.153 Sum_probs=52.8
Q ss_pred EEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||||...+... ...++ ...+-+++|++++... +.+.......... + +-=++.||.|..
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~--~~~~~~~~~~~~~----~-~~~lIlTKlDet--- 153 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQ--EDLEQALAFYEAF----G-IDGLILTKLDET--- 153 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG--HHHHHHHHHHHHS----S-TCEEEEESTTSS---
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccCh--HHHHHHHHHhhcc----c-CceEEEEeecCC---
Confidence 34789999996543321 11111 2467899999997653 3333322222221 1 225668999975
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
...-.........+.|+-.+| +|+++++
T Consensus 154 --~~~G~~l~~~~~~~~Pi~~it--~Gq~V~D 181 (196)
T PF00448_consen 154 --ARLGALLSLAYESGLPISYIT--TGQRVDD 181 (196)
T ss_dssp --STTHHHHHHHHHHTSEEEEEE--SSSSTTG
T ss_pred --CCcccceeHHHHhCCCeEEEE--CCCChhc
Confidence 122345666777888888777 6666643
No 407
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.00072 Score=61.78 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=73.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC----------CccCCCc-c------ceEEEEEE-E-C-------------Ce
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM----------EKYDPTI-E------DFYRKEIE-V-D-------------KA 150 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~----------~~~~~t~-~------~~~~~~~~-~-~-------------~~ 150 (286)
+.-.++++|+.|+||||++..+...... ..+.... . +.....+. . + ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 3456899999999999998888642100 0111100 0 00000010 0 0 01
Q ss_pred EEEEEEEeCCCcccchhh----hhhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASM----RDLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLAS 223 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~----~~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~ 223 (286)
.+.+.++||||....... ...+.. ..+.+++|.++. ...+++...... +. .+ +--+++||.|...
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag--~~~~d~~~i~~~---f~---~l~i~glI~TKLDET~ 356 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG--MKSADVMTILPK---LA---EIPIDGFIITKMDETT 356 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc--ccHHHHHHHHHh---cC---cCCCCEEEEEcccCCC
Confidence 245889999997543321 122222 235666776653 233333332222 21 22 3367789999751
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
..-....+....+.|+..++ +|+++.+
T Consensus 357 -----~~G~~Lsv~~~tglPIsylt--~GQ~Vpd 383 (407)
T PRK12726 357 -----RIGDLYTVMQETNLPVLYMT--DGQNITE 383 (407)
T ss_pred -----CccHHHHHHHHHCCCEEEEe--cCCCCCc
Confidence 12345666777888888887 6666654
No 408
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.36 E-value=0.0014 Score=53.39 Aligned_cols=83 Identities=16% Similarity=0.090 Sum_probs=44.8
Q ss_pred EEEEEEeCCCcccchhh----hhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASM----RDLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~----~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||||...+..- ...+ ....+.+++|+|+.... +...+...+.+.. + ..-++.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~---~~~~~~~~~~~~~---~-~~~viltk~D~~~~~ 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ---DAVNQAKAFNEAL---G-ITGVILTKLDGDARG 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh---HHHHHHHHHHhhC---C-CCEEEEECCcCCCCc
Confidence 34778999997533211 1111 13489999999986443 2223333333211 2 346777999976211
Q ss_pred CCCCHHHHHHHHHhcCCCEEE
Q psy10504 226 REVPTLDGQALAQSWGCPFIE 246 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~ 246 (286)
......+...+.|+..
T Consensus 156 -----g~~~~~~~~~~~p~~~ 171 (173)
T cd03115 156 -----GAALSIRAVTGKPIKF 171 (173)
T ss_pred -----chhhhhHHHHCcCeEe
Confidence 1222355666666543
No 409
>KOG3859|consensus
Probab=97.35 E-value=0.00034 Score=60.50 Aligned_cols=115 Identities=20% Similarity=0.273 Sum_probs=71.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-----ceEEEEEEECCeEEEEEEEeCCCcc-------cchhhh-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-----DFYRKEIEVDKAPCVLEILDTAGTE-------QFASMR- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-----~~~~~~~~~~~~~~~l~l~DtpG~~-------~~~~~~- 169 (286)
-.++|+-+|..|.|||||++.|.+..+.....+... ...++.+.-.+....++++||.|-. .|..+.
T Consensus 41 F~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iVd 120 (406)
T KOG3859|consen 41 FCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIVD 120 (406)
T ss_pred ceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHHH
Confidence 458999999999999999999999888665444332 2223444556777889999999921 222211
Q ss_pred ------h-------------hcccC--ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 170 ------D-------------LYIKN--GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 170 ------~-------------~~~~~--~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
. ..+.+ .+++++.+..+.. ++..+...- +. .....+.||-++-|.|-.
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH-~LKslDLvt--mk--~LdskVNIIPvIAKaDti 189 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGH-SLKSLDLVT--MK--KLDSKVNIIPVIAKADTI 189 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCc-chhHHHHHH--HH--HHhhhhhhHHHHHHhhhh
Confidence 0 11222 5677777777653 444333211 11 122366777788888864
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.31 E-value=0.00073 Score=63.85 Aligned_cols=139 Identities=19% Similarity=0.243 Sum_probs=73.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCC------------ccCCCcc-------ceEEEE--------------EEECCe
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFME------------KYDPTIE-------DFYRKE--------------IEVDKA 150 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~------------~~~~t~~-------~~~~~~--------------~~~~~~ 150 (286)
.-.++++|+.|+||||++..|....... .+..+.. +..... ....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d- 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRN- 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccC-
Confidence 3468999999999999998887521100 0000000 000000 01112
Q ss_pred EEEEEEEeCCCcccchhh---hhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASM---RDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~---~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
+.+.++||+|....... ....+.. ..-.++|+|++... ..+.+.. ..+.. ...--+++||.|..
T Consensus 335 -~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~--~~l~~i~---~~f~~--~~~~g~IlTKlDet-- 404 (484)
T PRK06995 335 -KHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG--DTLNEVV---QAYRG--PGLAGCILTKLDEA-- 404 (484)
T ss_pred -CCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH--HHHHHHH---HHhcc--CCCCEEEEeCCCCc--
Confidence 24789999994432211 1111111 22377888887532 2232222 22211 22335678999965
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV-NEM 258 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l 258 (286)
...-....+....+.|+..++ +|++| +++
T Consensus 405 ---~~~G~~l~i~~~~~lPI~yvt--~GQ~VPeDL 434 (484)
T PRK06995 405 ---ASLGGALDVVIRYKLPLHYVS--NGQRVPEDL 434 (484)
T ss_pred ---ccchHHHHHHHHHCCCeEEEe--cCCCChhhh
Confidence 123345667777888888886 77777 444
No 411
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0014 Score=64.97 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=75.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCc-----------cCCCc-c------ceEEEEEEE--C----------CeEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEK-----------YDPTI-E------DFYRKEIEV--D----------KAPCV 153 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~-----------~~~t~-~------~~~~~~~~~--~----------~~~~~ 153 (286)
-.++|+|+.|+||||++..|..... ... +.... . +.....+.. + -..+.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 4688999999999999988875321 100 00000 0 000000100 0 11234
Q ss_pred EEEEeCCCcccchh----hhhhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504 154 LEILDTAGTEQFAS----MRDLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE 227 (286)
Q Consensus 154 l~l~DtpG~~~~~~----~~~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~ 227 (286)
+.|+||+|-..... ..... ....+-+++|+|++.. .+.+.+....+...... + +-=+|+||.|...
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~--~~~l~~i~~~f~~~~~~-~-i~glIlTKLDEt~---- 337 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASH--GDTLNEVVHAYRHGAGE-D-VDGCIITKLDEAT---- 337 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCc--HHHHHHHHHHHhhcccC-C-CCEEEEeccCCCC----
Confidence 88999999332221 11111 2234568899998742 23333333333221000 1 3357799999752
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504 228 VPTLDGQALAQSWGCPFIEASAKNKTNV-NEM 258 (286)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l 258 (286)
..-....+....+.|+..++ +|++| +++
T Consensus 338 -~~G~iL~i~~~~~lPI~yit--~GQ~VPdDL 366 (767)
T PRK14723 338 -HLGPALDTVIRHRLPVHYVS--TGQKVPEHL 366 (767)
T ss_pred -CccHHHHHHHHHCCCeEEEe--cCCCChhhc
Confidence 12345566677788888886 77777 444
No 412
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.20 E-value=0.00052 Score=56.43 Aligned_cols=65 Identities=22% Similarity=0.215 Sum_probs=36.6
Q ss_pred EEEEEEeCCCcccchhh--hhhc---ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 152 CVLEILDTAGTEQFASM--RDLY---IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~--~~~~---~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
....++.+.|......+ .... .-..+.++.|+|+.+-.........+...... -=++++||+|+.
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~------ADvIvlnK~D~~ 154 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAF------ADVIVLNKIDLV 154 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-------SEEEEE-GGGH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhcchh------cCEEEEeccccC
Confidence 34667888886655544 1111 12357899999997643334444333332221 128889999987
No 413
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0088 Score=55.23 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=53.2
Q ss_pred EEEEEEeCCCcccchhh----hhhcccC--cc-EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASM----RDLYIKN--GQ-GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~----~~~~~~~--~d-~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
+.+.++||+|......+ ...++.. .+ -.+||+|++.. ..++...+ ..+... -+--+++||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~---~~~~~~--~~~~~I~TKlDet~- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIF---HQFSPF--SYKTVIFTKLDETT- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHH---HHhcCC--CCCEEEEEeccCCC-
Confidence 45889999996543321 1122222 23 58899999875 23333322 332111 13467889999751
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH-HHH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV-NEM 258 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv-~~l 258 (286)
..-....+....+.|+..++ +|+++ +++
T Consensus 327 ----~~G~~l~~~~~~~~Pi~yit--~Gq~vPeDl 355 (388)
T PRK12723 327 ----CVGNLISLIYEMRKEVSYVT--DGQIVPHNI 355 (388)
T ss_pred ----cchHHHHHHHHHCCCEEEEe--CCCCChhhh
Confidence 12344556667788887776 67777 444
No 414
>PRK10867 signal recognition particle protein; Provisional
Probab=97.19 E-value=0.0018 Score=60.52 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=51.2
Q ss_pred EEEEEEeCCCcccchh-hhh---hc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MRD---LY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~~---~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~ 224 (286)
+.+.++||||...... +.. .+ .-..+.+++|+|+..+ ++.......+.. .++ .-+|.||.|..
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~-----~~~i~giIlTKlD~~-- 253 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNE-----ALGLTGVILTKLDGD-- 253 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHh-----hCCCCEEEEeCccCc--
Confidence 4588999999543222 111 11 1246778999998643 333333333332 122 35677999964
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
.+. -.........+.|+.+++. |+.+++
T Consensus 254 ~rg---G~alsi~~~~~~PI~fig~--Ge~v~D 281 (433)
T PRK10867 254 ARG---GAALSIRAVTGKPIKFIGT--GEKLDD 281 (433)
T ss_pred ccc---cHHHHHHHHHCcCEEEEeC--CCcccc
Confidence 111 1255666777888877764 444443
No 415
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.19 E-value=0.0045 Score=52.58 Aligned_cols=62 Identities=27% Similarity=0.366 Sum_probs=40.9
Q ss_pred EEEEEeCC-CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCC-CcEEEEEeCCCCC
Q psy10504 153 VLEILDTA-GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER-VPILLVANKLDLA 222 (286)
Q Consensus 153 ~l~l~Dtp-G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~-~piivv~nK~Dl~ 222 (286)
.+.++||- |.+.|. +...+++|.+|+|+|.+- .++...+......... + .++.+|+||.|-.
T Consensus 135 e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~-~sl~taeri~~L~~el----g~k~i~~V~NKv~e~ 198 (255)
T COG3640 135 EVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEEL----GIKRIFVVLNKVDEE 198 (255)
T ss_pred cEEEEecccchhhhc---cccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHHh----CCceEEEEEeeccch
Confidence 35566763 444333 556788999999999874 3555555443333332 4 7999999999953
No 416
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.18 E-value=0.00055 Score=63.90 Aligned_cols=92 Identities=20% Similarity=0.161 Sum_probs=52.8
Q ss_pred EEEEEEeCCCcccchh-hhh---h--cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MRD---L--YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~~---~--~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||||....+. +.. . ..-..+.+++|+|+..+ ++.......+.... + ..-+|.||.|...
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v---~-i~giIlTKlD~~~-- 253 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL---G-LTGVVLTKLDGDA-- 253 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC---C-CCEEEEeCccCcc--
Confidence 4588999999543322 111 1 12347889999998753 33333333333211 2 2356789999641
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
+ .-.........+.|+.+++. |+.+++
T Consensus 254 ~---~G~~lsi~~~~~~PI~fi~~--Ge~i~d 280 (428)
T TIGR00959 254 R---GGAALSVRSVTGKPIKFIGV--GEKIDD 280 (428)
T ss_pred c---ccHHHHHHHHHCcCEEEEeC--CCChhh
Confidence 1 11256677778888877764 444444
No 417
>KOG2485|consensus
Probab=97.16 E-value=0.00066 Score=59.70 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=39.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC------CccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM------EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
..++.+.|+|-||+|||||+|++...... ....+..+......+.+..... +.++||||.-
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~-vy~iDTPGil 207 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP-VYLIDTPGIL 207 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc-eEEecCCCcC
Confidence 35789999999999999999999873221 2222333333333344444433 6789999943
No 418
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.16 E-value=0.0025 Score=45.85 Aligned_cols=97 Identities=19% Similarity=0.263 Sum_probs=56.4
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-hhhcccCccEEEEEEEC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-RDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-~~~~~~~~d~vilv~d~ 185 (286)
+++.|..|+||||+...+...--...+ ...-++ .+.++|+++....... .......+|.++++++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~---------~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~ 68 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGK---------RVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTP 68 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC---------eEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCC
Confidence 678899999999998887763221111 111122 3789999986533321 14566788999999988
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
+.. +....................+..++.|
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 69 EAL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred chh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 654 3444433332233323333455555544
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.12 E-value=0.0021 Score=42.13 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=28.5
Q ss_pred cCccEEEEEEECCC--cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504 174 KNGQGFVVVYSLTN--HHTFQDIKQMKELITRVKGSERVPILLVANKLD 220 (286)
Q Consensus 174 ~~~d~vilv~d~~~--~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 220 (286)
.-.+++++++|.+. +-+.++-...+..+.... +++|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 34689999999997 445566666677777643 3899999999998
No 420
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0043 Score=54.46 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=75.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC---------C-ccC-CCcc------ceEEEEEEE--C-------------Ce
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM---------E-KYD-PTIE------DFYRKEIEV--D-------------KA 150 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---------~-~~~-~t~~------~~~~~~~~~--~-------------~~ 150 (286)
+.-+++++|++|+||||++..+...... . .+. .... ......+.. + ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4469999999999999998877542110 0 000 0000 000001000 0 11
Q ss_pred EEEEEEEeCCCcccchhh----hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASM----RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~----~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
.+.+.++||||....... ...++ ...+-+++|+|++... +++..+...+.. --+--+++||.|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~--~d~~~~~~~f~~-----~~~~~~I~TKlDet~- 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD-----IHIDGIVFTKFDETA- 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCH--HHHHHHHHHhCC-----CCCCEEEEEeecCCC-
Confidence 346889999996533221 11122 2356789999986431 223332222221 123367789999752
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~ 256 (286)
..-....+....+.|+..++ +|+++.
T Consensus 226 ----~~G~~l~~~~~~~~Pi~~it--~Gq~vp 251 (270)
T PRK06731 226 ----SSGELLKIPAVSSAPIVLMT--DGQDVK 251 (270)
T ss_pred ----CccHHHHHHHHHCcCEEEEe--CCCCCC
Confidence 12244566667788888776 666654
No 421
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.08 E-value=0.0046 Score=57.91 Aligned_cols=90 Identities=26% Similarity=0.252 Sum_probs=51.7
Q ss_pred EEEEEEeCCCcccchh----hhhhccc---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS----MRDLYIK---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~----~~~~~~~---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
+.+.++||||...... ....++. ...-+.+|++++-. ...+.+.+..+.. . + +--++.||.|-...
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~---~-~-~~~vI~TKlDet~~ 372 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSR---L-P-LDGLIFTKLDETSS 372 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCC---C-C-CCEEEEeccccccc
Confidence 4588999999654431 1222222 23466788887643 2333333333222 1 1 23688999997521
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
.-....+....+.|+..++ +|.++
T Consensus 373 -----~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 373 -----LGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred -----ccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 2245666777888888776 66665
No 422
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.04 E-value=0.014 Score=52.63 Aligned_cols=65 Identities=8% Similarity=0.111 Sum_probs=37.5
Q ss_pred EEEEEEeCCCcccchhhhhhccc--------CccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIK--------NGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~--------~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
....+++|.|..+-..+...++. ..++++.|+|+.+.... ++.......+.. -=+|++||+|+.
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~-------AD~IvlnK~Dl~ 163 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-------ADRILLTKTDVA 163 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHh-------CCEEEEeccccC
Confidence 34567899997765555444322 24789999999763221 111111122222 228889999997
Q ss_pred C
Q psy10504 223 S 223 (286)
Q Consensus 223 ~ 223 (286)
+
T Consensus 164 ~ 164 (318)
T PRK11537 164 G 164 (318)
T ss_pred C
Confidence 3
No 423
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.001 Score=68.60 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=60.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCcCCCcc--CCCccce--EEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhc--
Q psy10504 107 VVVLGSGGVGKSALTVQFVSGCFMEKY--DPTIEDF--YRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLY-- 172 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~~~~--~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~-- 172 (286)
-+|+|++|+||||++..--..-..... ....... .....-+.+. -.++||+|-. .-...|..+
T Consensus 128 y~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~de---aVlIDtaGry~~q~s~~~~~~~~W~~fL~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPGTRNCDWWFTDE---AVLIDTAGRYITQDSADEVDRAEWLGFLG 204 (1188)
T ss_pred eEEecCCCCCcchHHhcccccCcchhhhccccccCCCCcccCcccccc---eEEEcCCcceecccCcchhhHHHHHHHHH
Confidence 579999999999997544321111110 0000011 1111222333 4579999922 111223322
Q ss_pred -------ccCccEEEEEEECCCcccH---------HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 173 -------IKNGQGFVVVYSLTNHHTF---------QDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 173 -------~~~~d~vilv~d~~~~~s~---------~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+-.+|+|+++|+.+--+. ..++.-+.++... -.-..|+.+++||.|+.
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccc
Confidence 3557999999999863221 1122223334332 22378999999999987
No 424
>KOG2484|consensus
Probab=96.97 E-value=0.00074 Score=61.19 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=39.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
.+.++++|+|-|++||||++|+|..... .....++.+.. -..+..+. . +.|+|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~s-mqeV~Ldk-~--i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRS-MQEVKLDK-K--IRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhh-hhheeccC-C--ceeccCCcee
Confidence 3679999999999999999999998665 23333343211 22222322 2 7899999943
No 425
>KOG1534|consensus
Probab=96.93 E-value=0.0019 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
++-..++|+.|+||||+.+.+..
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHH
Confidence 45678999999999999988875
No 426
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0077 Score=55.92 Aligned_cols=138 Identities=18% Similarity=0.122 Sum_probs=71.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc-CCC---------cc-CCCc-c------ceEEEEEE-E----------CCeEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC-FME---------KY-DPTI-E------DFYRKEIE-V----------DKAPCVL 154 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~-~~~---------~~-~~t~-~------~~~~~~~~-~----------~~~~~~l 154 (286)
...++++|++|+||||++.+|.... ... +. .... . +.....+. . ....+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4568899999999999988887421 100 00 0000 0 00000000 0 1123347
Q ss_pred EEEeCCCcccchh----hhhhccc-----CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 155 EILDTAGTEQFAS----MRDLYIK-----NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 155 ~l~DtpG~~~~~~----~~~~~~~-----~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
.++||||...... ....+++ ...-.+||+|++... +++......... . + +--++.||.|-..
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~---~-~-~~glIlTKLDEt~-- 373 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYES---L-N-YRRILLTKLDEAD-- 373 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcC---C-C-CCEEEEEcccCCC--
Confidence 8999999642221 1122222 234688999987652 223222222211 1 1 3367789999751
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
..-....+....+.|+..++ +|+++
T Consensus 374 ---~~G~il~i~~~~~lPI~ylt--~GQ~V 398 (432)
T PRK12724 374 ---FLGSFLELADTYSKSFTYLS--VGQEV 398 (432)
T ss_pred ---CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence 12235566667788877776 44444
No 427
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.78 E-value=0.0063 Score=46.91 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=21.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF 129 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~ 129 (286)
.-+++.|++|+|||++++.+.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999987543
No 428
>KOG2423|consensus
Probab=96.73 E-value=0.00071 Score=61.27 Aligned_cols=82 Identities=17% Similarity=0.128 Sum_probs=49.2
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCc--cCCCccceEEEEEEECCeEEEEEEEeCCCcccch--hhhhhcccC
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEK--YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA--SMRDLYIKN 175 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~--~~~~~~~~~ 175 (286)
.....+.|+++|-||+||||++|.|....+... .++.+.-+... -....+-++|+||.---. ......
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYI-----tLmkrIfLIDcPGvVyps~dset~iv--- 374 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYI-----TLMKRIFLIDCPGVVYPSSDSETDIV--- 374 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHH-----HHHhceeEecCCCccCCCCCchHHHH---
Confidence 345779999999999999999999998776443 22222211111 111236689999953211 111222
Q ss_pred ccEEEEEEECCCcc
Q psy10504 176 GQGFVVVYSLTNHH 189 (286)
Q Consensus 176 ~d~vilv~d~~~~~ 189 (286)
..+++-|=.+.+|+
T Consensus 375 LkGvVRVenv~~pe 388 (572)
T KOG2423|consen 375 LKGVVRVENVKNPE 388 (572)
T ss_pred hhceeeeeecCCHH
Confidence 23566666666654
No 429
>KOG4273|consensus
Probab=96.67 E-value=0.022 Score=48.82 Aligned_cols=111 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred eEEEEEECCCCC--cHHHHHHHHhcCcCCCccCCC-ccceEEEEEEECCeE----EEEEEEeCCCcccchhhhhhcccCc
Q psy10504 104 EFKVVVLGSGGV--GKSALTVQFVSGCFMEKYDPT-IEDFYRKEIEVDKAP----CVLEILDTAGTEQFASMRDLYIKNG 176 (286)
Q Consensus 104 ~~kV~ivG~~~~--GKTSLi~~l~~~~~~~~~~~t-~~~~~~~~~~~~~~~----~~l~l~DtpG~~~~~~~~~~~~~~~ 176 (286)
.+-++++|.+|+ ||-+|+.+|....|....... ...+.. +.++++. +.+.+.- -.+++.--......-.
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hg--wtid~kyysadi~lcish--icde~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHG--WTIDNKYYSADINLCISH--ICDEKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeec--eEecceeeecceeEEeec--ccchhccCCcccccce
Confidence 356889999999 999999999887664433222 112222 2223222 1232222 1122221122233445
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLA 222 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~ 222 (286)
.+++++||.+....+..+..|+..--.. ... ++.++||.|..
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdin----sfdillcignkvdrv 122 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDIN----SFDILLCIGNKVDRV 122 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccc----cchhheecccccccc
Confidence 7899999999998888888887632211 122 34566999965
No 430
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.63 E-value=0.0099 Score=52.62 Aligned_cols=104 Identities=9% Similarity=0.100 Sum_probs=65.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----------------
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF---------------- 165 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~---------------- 165 (286)
.+.+.++++|++|-|||+++++|........ .+. ...+.+..+.+|.....
T Consensus 59 ~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~------------~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~ 125 (302)
T PF05621_consen 59 HRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DED------------AERIPVVYVQMPPEPDERRFYSAILEALGAPYR 125 (302)
T ss_pred cCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCC------------CccccEEEEecCCCCChHHHHHHHHHHhCcccC
Confidence 3567899999999999999999997533221 111 01112445566542111
Q ss_pred --------hhhhhhcccCccEEEEEEECCC---cccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504 166 --------ASMRDLYIKNGQGFVVVYSLTN---HHTFQDIKQMKELITRVKGSERVPILLVANK 218 (286)
Q Consensus 166 --------~~~~~~~~~~~d~vilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piivv~nK 218 (286)
.......++...+=++++|=-+ ..+...-+..++.++.....-++|+|.||++
T Consensus 126 ~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 126 PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 1112345677888899999543 2344555666666666655668999999876
No 431
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.62 E-value=0.0054 Score=48.21 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=60.5
Q ss_pred EECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504 109 VLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188 (286)
Q Consensus 109 ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~ 188 (286)
.-|..|+|||++...+....-.....-..-+ .........+.+.++|+|+.. .......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd---~D~~~~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~- 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLD---ADLGLANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEP- 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEE---CCCCCCCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCCh-
Confidence 4567899999996655442110000000000 000000111558899999853 3334567889999999998864
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 189 HTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.++......+..+.... ...++.+|+|+.+..
T Consensus 79 ~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 TSITDAYALIKKLAKQL--RVLNFRVVVNRAESP 110 (139)
T ss_pred hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCCH
Confidence 45555555555554422 355788999999743
No 432
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.62 E-value=0.039 Score=46.52 Aligned_cols=90 Identities=16% Similarity=0.066 Sum_probs=54.3
Q ss_pred EEEEEEEeCCCcccchhhh-hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASMR-DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV 228 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~-~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~ 228 (286)
.+.+.++|++|........ ....+.+|.+++++..+ ..++..+......+.......+.+ ..++.|+.+.. .
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~-----~ 189 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGE-FMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD-----R 189 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEeccc-HHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc-----c
Confidence 4668899998754322221 11124789999999774 445666666666666543332444 35888999853 2
Q ss_pred CHHHHHHHHHhcCCCEEE
Q psy10504 229 PTLDGQALAQSWGCPFIE 246 (286)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~ 246 (286)
.....+.+.+.++.+++.
T Consensus 190 ~~~~~~~~~~~~~~~vl~ 207 (212)
T cd02117 190 ETELIDAFAERLGTQVIH 207 (212)
T ss_pred HHHHHHHHHHHcCCCEEE
Confidence 234556777777766553
No 433
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.61 E-value=0.046 Score=44.29 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=52.6
Q ss_pred EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD 232 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 232 (286)
.+.++|+|+.... .....+..+|.++++++.+. .++..+..++..+... ......+++|+.|... ......
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~---~~~~~~ 134 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM---VEGGDM 134 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc---cchhhH
Confidence 4889999986433 23455688999999998864 4566666655555542 1234678899998641 111222
Q ss_pred HHHHHHhcCCCEE
Q psy10504 233 GQALAQSWGCPFI 245 (286)
Q Consensus 233 ~~~~~~~~~~~~~ 245 (286)
.+.+.+.++.+++
T Consensus 135 ~~~~~~~~~~~v~ 147 (179)
T cd02036 135 VEDIEEILGVPLL 147 (179)
T ss_pred HHHHHHHhCCCEE
Confidence 3455666677654
No 434
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=96.55 E-value=0.054 Score=49.27 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+-.++.|--|+|||||+++++..
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 5 PVTIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34678999999999999999863
No 435
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.54 E-value=0.0019 Score=49.15 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.|+|.|.+||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 436
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=96.53 E-value=0.0087 Score=44.23 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=49.5
Q ss_pred EEEEC-CCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 107 VVVLG-SGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 107 V~ivG-~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
|++.| ..|+||||+...+....-.... ....+..+.. +.+.++|+|+.... .....+..+|.++++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~-------~vl~~d~d~~-~d~viiD~p~~~~~--~~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGK-------RVLLIDLDPQ-YDYIIIDTPPSLGL--LTRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCC-------cEEEEeCCCC-CCEEEEeCcCCCCH--HHHHHHHHCCEEEEeccC
Confidence 56666 5799999987666542111110 0111111211 55889999986432 234677889999999987
Q ss_pred CCcccHHHHHHHHH
Q psy10504 186 TNHHTFQDIKQMKE 199 (286)
Q Consensus 186 ~~~~s~~~~~~~~~ 199 (286)
+ ..+++.+..++.
T Consensus 72 ~-~~s~~~~~~~~~ 84 (104)
T cd02042 72 S-PLDLDGLEKLLE 84 (104)
T ss_pred C-HHHHHHHHHHHH
Confidence 5 446666666555
No 437
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.50 E-value=0.0056 Score=55.25 Aligned_cols=96 Identities=24% Similarity=0.147 Sum_probs=66.0
Q ss_pred EEeCCCcc-cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHH
Q psy10504 156 ILDTAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234 (286)
Q Consensus 156 l~DtpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 234 (286)
+-+.|||. ++.......+...|+++-|+|+.+|.+..... +..+.. +.|.++|+||+|+. .......-.+
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~--l~~~v~-----~k~~i~vlNK~DL~--~~~~~~~W~~ 84 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPE--LERIVK-----EKPKLLVLNKADLA--PKEVTKKWKK 84 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCcc--HHHHHc-----cCCcEEEEehhhcC--CHHHHHHHHH
Confidence 45557865 55566777889999999999999987554432 122222 55669999999997 2222344445
Q ss_pred HHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 235 ALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 235 ~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
.+....+...+.++++.+.+...+..
T Consensus 85 ~~~~~~~~~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 85 YFKKEEGIKPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred HHHhcCCCccEEEEeecccCccchHH
Confidence 55555577788899998887777664
No 438
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.48 E-value=0.0028 Score=42.49 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..+|.|+.|+|||||++++.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998865
No 439
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=96.47 E-value=0.0068 Score=45.34 Aligned_cols=100 Identities=16% Similarity=0.196 Sum_probs=56.8
Q ss_pred ECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCc
Q psy10504 110 LGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNH 188 (286)
Q Consensus 110 vG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~ 188 (286)
=+..|+||||+...|....-.. ...-.. ......... .+.++|+|+... ......+..+|.++++++.+ .
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~~l-----~d~d~~~~~-D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~-~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRVLL-----VDLDLQFGD-DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQD-L 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcEEE-----EECCCCCCC-CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCC-h
Confidence 3457899999866664421111 100000 000000000 478999998643 33445678899999999775 4
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504 189 HTFQDIKQMKELITRVKGSERVPILLVANK 218 (286)
Q Consensus 189 ~s~~~~~~~~~~i~~~~~~~~~piivv~nK 218 (286)
.+...+..+...+......+...+.+|+|+
T Consensus 77 ~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 PSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 567777777776665432213466777775
No 440
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.46 E-value=0.0052 Score=50.26 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=28.4
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
|++++|+|+.++.+..+ ..+...+. ....++|+++|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hccCCCCEEEEEehhhcC
Confidence 78999999998754332 12222211 112368999999999996
No 441
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.30 E-value=0.045 Score=44.97 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++++|+.|+|||||++.+.+-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 347899999999999999998874
No 442
>PRK08118 topology modulation protein; Reviewed
Probab=96.28 E-value=0.0034 Score=51.11 Aligned_cols=22 Identities=45% Similarity=0.768 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+|+|+|++|||||||...+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998863
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.23 E-value=0.038 Score=51.07 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=48.6
Q ss_pred EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK~Dl~~~ 224 (286)
+.+.++||+|-...+. +.. .-.-+.|=+++|+|+.-++...+... .+.. .+++ =|++||.|..
T Consensus 183 ~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~---aF~e-----~l~itGvIlTKlDGd-- 252 (451)
T COG0541 183 YDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAK---AFNE-----ALGITGVILTKLDGD-- 252 (451)
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHH---HHhh-----hcCCceEEEEcccCC--
Confidence 4588999999443332 111 12345788999999987754444333 2222 3343 4678999975
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vS 248 (286)
.+- -.........+.|+-++.
T Consensus 253 aRG---GaALS~~~~tg~PIkFiG 273 (451)
T COG0541 253 ARG---GAALSARAITGKPIKFIG 273 (451)
T ss_pred Ccc---hHHHhhHHHHCCCeEEEe
Confidence 221 123334455677766665
No 444
>PRK01889 GTPase RsgA; Reviewed
Probab=96.20 E-value=0.0045 Score=56.69 Aligned_cols=23 Identities=43% Similarity=0.622 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-+++++|.+|+|||||++.+.+.
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~ 218 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGE 218 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999874
No 445
>PRK07261 topology modulation protein; Provisional
Probab=96.20 E-value=0.004 Score=50.87 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|+|.+|+|||||...+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 446
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.19 E-value=0.0063 Score=51.26 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+..-|+|+|++|+|||||+++|...
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhc
Confidence 5566889999999999999999763
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.17 E-value=0.063 Score=51.56 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=51.2
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCCCCCCCC-------HHHHHHHHHhcCCCEEEEe
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLASHQREVP-------TLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~~~~~vS 248 (286)
.-+|||=|.=+--..+. ..+...+..+...... |+|++++=+|......... ..-...+....++..+.+.
T Consensus 133 ~kvILVEDlPN~~~~~~-~~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FN 211 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDT-SRFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFN 211 (519)
T ss_pred ceEEEeeccccccchhH-HHHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEec
Confidence 34566656543222222 3344444444444455 9999999655432211111 1112344556678888888
Q ss_pred CCCCCcHHHHHHHHHHHh
Q psy10504 249 AKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i 266 (286)
+-...-+.+.+..|+..-
T Consensus 212 pIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 212 PIAPTFMKKALKRILKKE 229 (519)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 888888888888888765
No 448
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.15 E-value=0.0045 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+|+|+|+|||||||+..+|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999875
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.12 E-value=0.004 Score=50.24 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=17.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999864
No 450
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.12 E-value=0.0043 Score=48.56 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy10504 107 VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~ 126 (286)
|+++|++|+||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999974
No 451
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.09 E-value=0.0054 Score=42.05 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|++.|.+|+||||+.+++...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999865
No 452
>PRK04195 replication factor C large subunit; Provisional
Probab=96.04 E-value=0.061 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-++|.|++|+||||+++.+...
T Consensus 40 ~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999999999999874
No 453
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.03 E-value=0.0055 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+.=.++|+|++|||||||++.+-.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3457899999999999999988653
No 454
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0062 Score=50.48 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-|+|+|++|||||||+++|+..
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45899999999999999999874
No 455
>PF05729 NACHT: NACHT domain
Probab=95.97 E-value=0.028 Score=44.66 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
++|.|.+|+|||+++.++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 689999999999999998874
No 456
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.96 E-value=0.0059 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36899999999999999998875
No 457
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.95 E-value=0.0059 Score=52.34 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-|+++|++|+|||||++-+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 388999999999999999987
No 458
>KOG1533|consensus
Probab=95.94 E-value=0.005 Score=52.26 Aligned_cols=21 Identities=38% Similarity=0.548 Sum_probs=16.4
Q ss_pred EEEEEECCCCCcHHHHHHHHh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~ 125 (286)
+-.+|+|+||+||||.++-..
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 346799999999999865443
No 459
>PRK14530 adenylate kinase; Provisional
Probab=95.94 E-value=0.0061 Score=51.60 Aligned_cols=23 Identities=22% Similarity=0.534 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..+|+|+|.|||||||+.+.|..
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998865
No 460
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.92 E-value=0.056 Score=48.37 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC------Ccc----------------ceEEEE-------EEE-----
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP------TIE----------------DFYRKE-------IEV----- 147 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~------t~~----------------~~~~~~-------~~~----- 147 (286)
.++..++++|-.|+||||-+-.|...-......- |-+ +.+... +-+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 3578899999999999998777765111111000 000 111100 000
Q ss_pred -CCeEEEEEEEeCCCcccch-hh------hhhcccC-----ccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504 148 -DKAPCVLEILDTAGTEQFA-SM------RDLYIKN-----GQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPIL 213 (286)
Q Consensus 148 -~~~~~~l~l~DtpG~~~~~-~~------~~~~~~~-----~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pii 213 (286)
....+.+.++||+|--.-. .+ ..+.... .+-++++.|++-+. +++..+. +... -++- -
T Consensus 217 Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~----F~ea---v~l~-G 288 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKI----FNEA---VGLD-G 288 (340)
T ss_pred HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHH----HHHh---cCCc-e
Confidence 0122458899999932111 11 1112222 34488888998764 2233222 2221 1222 4
Q ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 214 LVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 214 vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
+++||.|.. +.-- ....++...+.|+.++- -|+++++|-
T Consensus 289 iIlTKlDgt-AKGG----~il~I~~~l~~PI~fiG--vGE~~~DL~ 327 (340)
T COG0552 289 IILTKLDGT-AKGG----IILSIAYELGIPIKFIG--VGEGYDDLR 327 (340)
T ss_pred EEEEecccC-CCcc----eeeeHHHHhCCCEEEEe--CCCChhhcc
Confidence 678999965 2221 12445677889988886 577777763
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.92 E-value=0.0078 Score=50.62 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
++..-|+|.|++|+|||||++.+.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHH
Confidence 3567799999999999999999976
No 462
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.91 E-value=0.0064 Score=51.73 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
=-|+|+|++|||||||++-+-+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999998865
No 463
>KOG0780|consensus
Probab=95.85 E-value=0.0053 Score=55.67 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=36.9
Q ss_pred eEEEEEEEeCCCcccc-hhhhhh-----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 150 APCVLEILDTAGTEQF-ASMRDL-----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~-~~~~~~-----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
..+.+.++||.|-... .++... -.-..|-+|+|+|++-+..-+.....+..-.. +- -+++||.|..
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~vd------vg-~vIlTKlDGh 253 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKETVD------VG-AVILTKLDGH 253 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHhhc------cc-eEEEEecccC
Confidence 3456889999994322 222221 12347899999999876544443332222111 11 3556787764
No 464
>PRK08233 hypothetical protein; Provisional
Probab=95.83 E-value=0.0088 Score=48.81 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+..-|+|.|.+|+|||||.++|...
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhh
Confidence 3467889999999999999999863
No 465
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.72 E-value=0.0082 Score=45.76 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 466
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.66 E-value=0.0061 Score=50.01 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=21.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
..=+++.|++|+||||++++|....
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4558899999999999999999865
No 467
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.65 E-value=0.011 Score=45.10 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFM 130 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~ 130 (286)
..++++|++|+|||+++..+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 46899999999999999999875443
No 468
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.64 E-value=0.05 Score=43.90 Aligned_cols=24 Identities=29% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++++|+.|+|||||++.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999875
No 469
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.64 E-value=0.01 Score=46.64 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|+|+|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 470
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.63 E-value=0.0094 Score=47.04 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.|+|+|+.|+|||||+..|++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 471
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.63 E-value=0.0098 Score=45.54 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999875
No 472
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=95.62 E-value=0.16 Score=44.27 Aligned_cols=67 Identities=16% Similarity=0.099 Sum_probs=39.7
Q ss_pred EEEEEEEeCCCcccchhhh-hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeC
Q psy10504 151 PCVLEILDTAGTEQFASMR-DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANK 218 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~-~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK 218 (286)
.+.+.++||||......+. ......+|.+++++..+ +.++..+......+.......+.++. ++.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE-MMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc-hHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 3568899998864322221 22233589999998775 45666666665555554333356665 44465
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.62 E-value=0.0098 Score=49.13 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|++|+|||||++.+...
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999764
No 474
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.60 E-value=1 Score=36.69 Aligned_cols=143 Identities=12% Similarity=0.160 Sum_probs=96.8
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+..+...|+++|.-+.++..|..++....- + ....+.... -.=.| .+....+ ...|.+
T Consensus 11 p~ln~atiLLVg~e~~~~~~LA~a~l~~~~------~----~~l~Vh~a~------sLPLp--~e~~~lR----prIDlI 68 (176)
T PF11111_consen 11 PELNTATILLVGTEEALLQQLAEAMLEEDK------E----FKLKVHLAK------SLPLP--SENNNLR----PRIDLI 68 (176)
T ss_pred CCcceeEEEEecccHHHHHHHHHHHHhhcc------c----eeEEEEEec------cCCCc--ccccCCC----ceeEEE
Confidence 345678999999999999999999986210 0 111111111 01111 1112122 357999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
+|++|....-+++.++.-+..+-..... + .+.++.+-.... +...+...+..+++..+.+|++.+.-.+.++...+-
T Consensus 69 VFvinl~sk~SL~~ve~SL~~vd~~ffl-G-KVCfl~t~a~~~-~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 69 VFVINLHSKYSLQSVEASLSHVDPSFFL-G-KVCFLATNAGRE-SHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEecCCcccHHHHHHHHhhCChhhhc-c-ceEEEEcCCCcc-cccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 9999999999999988766655432222 2 345555555544 445677888999999999999999999999998888
Q ss_pred HHHHHHhh
Q psy10504 260 AEIVREMN 267 (286)
Q Consensus 260 ~~i~~~i~ 267 (286)
+.|++.++
T Consensus 146 qRLL~~lq 153 (176)
T PF11111_consen 146 QRLLRMLQ 153 (176)
T ss_pred HHHHHHHH
Confidence 88888765
No 475
>PRK06217 hypothetical protein; Validated
Probab=95.57 E-value=0.011 Score=48.64 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+|+|+|.+|+||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999863
No 476
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.55 E-value=0.039 Score=43.10 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
-.|++.|+.|+|||||++.+...-
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999998853
No 477
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.54 E-value=0.011 Score=44.26 Aligned_cols=21 Identities=29% Similarity=0.757 Sum_probs=18.9
Q ss_pred EEEEEECCCCCcHHHHHHHHh
Q psy10504 105 FKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~ 125 (286)
-.++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 458999999999999999975
No 478
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.53 E-value=0.014 Score=49.10 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=22.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+|.|++|||||||.+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5688999999999999999998764
No 479
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.52 E-value=0.011 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 480
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.46 E-value=0.036 Score=43.74 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
++|.|++|+|||+++..+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 679999999999999998764
No 481
>KOG2423|consensus
Probab=95.42 E-value=0.074 Score=48.62 Aligned_cols=101 Identities=15% Similarity=0.155 Sum_probs=67.3
Q ss_pred hhhhcc---cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCE
Q psy10504 168 MRDLYI---KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPF 244 (286)
Q Consensus 168 ~~~~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 244 (286)
+|...| ...|++|-|+|+.||-... ....-..+.. ..+.+++|.|+||+||. .-.+...-...+.+.+..-.
T Consensus 203 IW~ELyKViDSSDVvvqVlDARDPmGTr-c~~ve~ylkk--e~phKHli~vLNKvDLV--Ptwvt~~Wv~~lSkeyPTiA 277 (572)
T KOG2423|consen 203 IWGELYKVIDSSDVVVQVLDARDPMGTR-CKHVEEYLKK--EKPHKHLIYVLNKVDLV--PTWVTAKWVRHLSKEYPTIA 277 (572)
T ss_pred HHHHHHHhhcccceeEEeeeccCCcccc-cHHHHHHHhh--cCCcceeEEEeeccccc--cHHHHHHHHHHHhhhCccee
Confidence 454444 5689999999999975332 1222222332 55789999999999997 23334455667777777777
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCCCCc
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNFNPEKD 273 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~~~ 273 (286)
|..|..+..|=..+++.+.+..+-...++
T Consensus 278 fHAsi~nsfGKgalI~llRQf~kLh~dkk 306 (572)
T KOG2423|consen 278 FHASINNSFGKGALIQLLRQFAKLHSDKK 306 (572)
T ss_pred eehhhcCccchhHHHHHHHHHHhhccCcc
Confidence 88888888887777777666555443333
No 482
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.42 E-value=0.013 Score=47.89 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.|+++|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4889999999999999999874
No 483
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.39 E-value=0.014 Score=47.80 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+++|.+||||||+++.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999974
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.34 E-value=0.015 Score=47.78 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.=.++|+|++|+|||||+|-+.+
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHh
Confidence 45799999999999999998877
No 485
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.32 E-value=0.02 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+.+-++|+|.+|+|||||+.++...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457899999999999999999864
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=95.31 E-value=0.013 Score=48.73 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|+|.|++|||||||.+.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 487
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=95.31 E-value=0.052 Score=41.76 Aligned_cols=24 Identities=17% Similarity=0.283 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.--|++-|+-|+|||||++.+...
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999874
No 488
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.30 E-value=0.015 Score=47.68 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=20.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
+.-.++++|+.|+|||||++.+.
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHh
Confidence 34578999999999999999885
No 489
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.30 E-value=0.057 Score=49.12 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=22.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
...+|+|.|++|+|||||++++....
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 35789999999999999999998753
No 490
>PRK03839 putative kinase; Provisional
Probab=95.29 E-value=0.015 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 491
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=95.29 E-value=0.016 Score=49.02 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++++|+.|+|||||++.+.+-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
No 492
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.29 E-value=0.014 Score=50.63 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
--++++|+.|+|||||++.+.+
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999987
No 493
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.28 E-value=0.016 Score=47.89 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++++|++|+|||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 494
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.24 E-value=0.017 Score=48.56 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 495
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.23 E-value=0.016 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-|+++|++|+|||||++.+-+
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 489999999999999999877
No 496
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.22 E-value=0.017 Score=48.78 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++++|+.|+|||||++.+.+-
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 497
>PRK10646 ADP-binding protein; Provisional
Probab=95.21 E-value=0.085 Score=42.18 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-|++-|+-|+|||||++.+...
T Consensus 30 vi~L~GdLGaGKTtf~rgl~~~ 51 (153)
T PRK10646 30 VIYLYGDLGAGKTTFSRGFLQA 51 (153)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 498
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=95.19 E-value=0.018 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.590 Sum_probs=22.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..++++|+|++|+|||+|+..++..
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 5589999999999999998888764
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.18 E-value=0.017 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998874
No 500
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.18 E-value=0.018 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
Done!