Query psy10504
Match_columns 286
No_of_seqs 255 out of 2125
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 19:51:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 1.8E-35 6.1E-40 250.5 18.2 168 99-268 8-176 (216)
2 3t5g_A GTP-binding protein RHE 100.0 1.8E-31 6E-36 218.3 20.5 171 102-273 4-174 (181)
3 4dsu_A GTPase KRAS, isoform 2B 100.0 2E-31 6.8E-36 219.0 20.8 164 103-268 3-166 (189)
4 3oes_A GTPase rhebl1; small GT 100.0 4.1E-32 1.4E-36 226.5 16.4 182 100-286 20-201 (201)
5 3kkq_A RAS-related protein M-R 100.0 4.5E-31 1.5E-35 216.3 22.2 168 100-268 14-182 (183)
6 1c1y_A RAS-related protein RAP 100.0 2.9E-31 1E-35 213.5 19.2 164 103-267 2-166 (167)
7 2fn4_A P23, RAS-related protei 100.0 3.3E-31 1.1E-35 215.9 19.2 171 100-271 5-175 (181)
8 1kao_A RAP2A; GTP-binding prot 100.0 3.7E-31 1.3E-35 212.5 18.7 165 103-268 2-166 (167)
9 1u8z_A RAS-related protein RAL 100.0 6E-31 2E-35 211.5 19.6 166 102-268 2-167 (168)
10 2bov_A RAla, RAS-related prote 100.0 6.2E-31 2.1E-35 219.3 20.2 169 99-268 9-177 (206)
11 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-30 3.8E-35 215.3 19.3 167 98-270 14-182 (184)
12 3reg_A RHO-like small GTPase; 100.0 3.1E-30 1.1E-34 213.7 21.5 170 100-271 19-191 (194)
13 2nzj_A GTP-binding protein REM 100.0 1.8E-30 6E-35 210.7 19.5 166 103-269 3-170 (175)
14 2efe_B Small GTP-binding prote 100.0 4.5E-30 1.5E-34 209.6 21.7 170 101-272 9-179 (181)
15 2a9k_A RAS-related protein RAL 100.0 1.1E-30 3.7E-35 214.0 18.1 169 100-269 14-182 (187)
16 3q3j_B RHO-related GTP-binding 100.0 1.2E-30 4.1E-35 220.2 18.6 176 96-273 19-208 (214)
17 2j0v_A RAC-like GTP-binding pr 100.0 5.8E-31 2E-35 221.1 16.5 171 102-274 7-186 (212)
18 3c5c_A RAS-like protein 12; GD 100.0 1.1E-30 3.9E-35 215.6 17.7 167 100-268 17-186 (187)
19 3tkl_A RAS-related protein RAB 100.0 6.8E-30 2.3E-34 211.4 22.0 170 102-273 14-184 (196)
20 1mh1_A RAC1; GTP-binding, GTPa 100.0 3.8E-30 1.3E-34 210.8 20.0 169 102-272 3-184 (186)
21 3q72_A GTP-binding protein RAD 100.0 1.9E-30 6.7E-35 208.9 17.9 163 104-268 2-164 (166)
22 2ce2_X GTPase HRAS; signaling 100.0 1E-29 3.4E-34 203.7 21.9 164 103-268 2-165 (166)
23 3con_A GTPase NRAS; structural 100.0 7.9E-30 2.7E-34 210.3 21.4 169 100-270 17-185 (190)
24 3cbq_A GTP-binding protein REM 100.0 5.7E-30 1.9E-34 213.0 20.7 170 101-271 20-191 (195)
25 2a5j_A RAS-related protein RAB 100.0 4.5E-30 1.5E-34 212.3 19.9 169 99-269 16-185 (191)
26 2atx_A Small GTP binding prote 100.0 6.4E-30 2.2E-34 211.6 20.7 167 100-268 14-193 (194)
27 1r2q_A RAS-related protein RAB 100.0 4.9E-30 1.7E-34 206.7 19.1 165 102-268 4-169 (170)
28 2hup_A RAS-related protein RAB 100.0 4.2E-30 1.4E-34 214.7 18.9 169 101-271 26-196 (201)
29 2ew1_A RAS-related protein RAB 100.0 5.1E-30 1.7E-34 214.5 19.2 168 101-270 23-191 (201)
30 2gf0_A GTP-binding protein DI- 100.0 5.1E-30 1.8E-34 212.6 18.8 165 103-269 7-172 (199)
31 2q3h_A RAS homolog gene family 100.0 4.6E-30 1.6E-34 213.7 18.4 169 100-270 16-197 (201)
32 1ek0_A Protein (GTP-binding pr 100.0 7.6E-30 2.6E-34 205.6 19.1 165 103-268 2-169 (170)
33 1z0f_A RAB14, member RAS oncog 100.0 1.2E-29 4.2E-34 206.3 20.5 165 102-268 13-178 (179)
34 1z06_A RAS-related protein RAB 100.0 7.9E-30 2.7E-34 210.4 19.4 168 100-268 16-188 (189)
35 2hxs_A RAB-26, RAS-related pro 100.0 5.6E-30 1.9E-34 208.5 18.2 169 102-271 4-176 (178)
36 3q85_A GTP-binding protein REM 100.0 7.9E-30 2.7E-34 205.9 18.9 165 104-269 2-168 (169)
37 2gf9_A RAS-related protein RAB 100.0 1.4E-29 4.8E-34 208.9 20.7 166 101-268 19-185 (189)
38 2g6b_A RAS-related protein RAB 100.0 2.5E-29 8.4E-34 205.0 22.0 168 101-270 7-176 (180)
39 2g3y_A GTP-binding protein GEM 100.0 6.8E-30 2.3E-34 215.5 19.1 167 101-268 34-203 (211)
40 1z08_A RAS-related protein RAB 100.0 1E-29 3.4E-34 205.3 19.1 164 103-268 5-169 (170)
41 2y8e_A RAB-protein 6, GH09086P 100.0 8.7E-30 3E-34 207.2 18.8 167 100-268 10-177 (179)
42 1z2a_A RAS-related protein RAB 100.0 1E-29 3.4E-34 204.7 18.8 163 103-268 4-167 (168)
43 2fu5_C RAS-related protein RAB 100.0 4E-30 1.4E-34 210.7 16.6 165 103-269 7-172 (183)
44 1z0j_A RAB-22, RAS-related pro 100.0 1.9E-29 6.5E-34 203.5 20.4 165 102-268 4-169 (170)
45 3tw8_B RAS-related protein RAB 100.0 2E-29 6.9E-34 205.4 20.6 166 102-270 7-173 (181)
46 2atv_A RERG, RAS-like estrogen 100.0 6E-30 2.1E-34 212.4 17.8 167 101-269 25-192 (196)
47 2erx_A GTP-binding protein DI- 100.0 9.9E-30 3.4E-34 205.3 18.4 165 103-268 2-167 (172)
48 1wms_A RAB-9, RAB9, RAS-relate 100.0 5.1E-29 1.8E-33 202.6 22.7 167 101-269 4-175 (177)
49 2iwr_A Centaurin gamma 1; ANK 100.0 2E-29 6.9E-34 205.5 20.1 162 102-269 5-170 (178)
50 1g16_A RAS-related protein SEC 100.0 1.7E-29 5.8E-34 203.8 19.3 164 103-269 2-166 (170)
51 2bme_A RAB4A, RAS-related prot 100.0 1.4E-29 4.9E-34 207.7 18.8 166 102-269 8-174 (186)
52 2bcg_Y Protein YP2, GTP-bindin 100.0 4.3E-29 1.5E-33 208.7 22.0 165 102-268 6-171 (206)
53 1x3s_A RAS-related protein RAB 100.0 2.1E-29 7.1E-34 208.1 19.8 168 101-270 12-180 (195)
54 2fg5_A RAB-22B, RAS-related pr 100.0 1.3E-29 4.4E-34 209.9 18.5 168 102-271 21-189 (192)
55 2j1l_A RHO-related GTP-binding 100.0 1.4E-29 4.7E-34 213.5 18.1 169 101-271 31-212 (214)
56 3bc1_A RAS-related protein RAB 100.0 4.3E-29 1.5E-33 205.6 20.6 168 101-269 8-186 (195)
57 1m7b_A RND3/RHOE small GTP-bin 100.0 1.5E-29 5.1E-34 208.0 17.8 165 102-268 5-183 (184)
58 2oil_A CATX-8, RAS-related pro 100.0 2E-29 6.7E-34 208.5 18.6 167 101-269 22-189 (193)
59 1ky3_A GTP-binding protein YPT 100.0 2.2E-29 7.5E-34 205.3 18.4 168 102-269 6-179 (182)
60 2il1_A RAB12; G-protein, GDP, 100.0 1.7E-29 6E-34 209.2 17.9 166 101-268 23-190 (192)
61 2p5s_A RAS and EF-hand domain 100.0 1.5E-29 5E-34 210.7 17.2 168 100-268 24-197 (199)
62 2o52_A RAS-related protein RAB 100.0 1.4E-29 4.6E-34 211.3 17.0 167 102-270 23-190 (200)
63 1zbd_A Rabphilin-3A; G protein 100.0 7.5E-29 2.6E-33 206.6 21.5 164 103-268 7-171 (203)
64 3cpj_B GTP-binding protein YPT 100.0 3.3E-29 1.1E-33 212.4 19.2 170 102-273 11-181 (223)
65 3dz8_A RAS-related protein RAB 100.0 3.1E-30 1.1E-34 213.3 12.0 167 102-270 21-188 (191)
66 1gwn_A RHO-related GTP-binding 100.0 2.5E-29 8.4E-34 210.9 17.4 166 101-268 25-204 (205)
67 2gco_A H9, RHO-related GTP-bin 100.0 1.3E-28 4.3E-33 205.4 21.2 167 100-268 21-200 (201)
68 2fv8_A H6, RHO-related GTP-bin 100.0 1.1E-28 3.7E-33 206.8 20.1 168 101-270 22-202 (207)
69 2f7s_A C25KG, RAS-related prot 100.0 2.2E-29 7.6E-34 212.1 15.5 167 101-268 22-199 (217)
70 2cjw_A GTP-binding protein GEM 100.0 2.9E-29 9.9E-34 208.2 15.8 167 102-269 4-173 (192)
71 4bas_A ADP-ribosylation factor 100.0 3.9E-29 1.3E-33 207.2 16.5 173 97-272 10-193 (199)
72 3bwd_D RAC-like GTP-binding pr 100.0 5.2E-30 1.8E-34 209.4 11.0 165 102-268 6-181 (182)
73 4gzl_A RAS-related C3 botulinu 100.0 5E-29 1.7E-33 208.6 16.8 164 101-266 27-203 (204)
74 3cph_A RAS-related protein SEC 100.0 2E-28 6.9E-33 205.2 20.3 164 102-268 18-182 (213)
75 3clv_A RAB5 protein, putative; 100.0 3.1E-28 1.1E-32 201.8 20.9 161 103-268 6-204 (208)
76 1vg8_A RAS-related protein RAB 100.0 2.7E-28 9.1E-33 203.6 20.4 165 102-268 6-175 (207)
77 2yc2_C IFT27, small RAB-relate 100.0 2.4E-29 8.4E-34 209.7 13.8 168 102-269 18-193 (208)
78 4djt_A GTP-binding nuclear pro 100.0 3.9E-28 1.3E-32 204.6 17.0 171 101-273 8-180 (218)
79 2h57_A ADP-ribosylation factor 100.0 7.2E-28 2.5E-32 198.8 18.1 163 100-268 17-187 (190)
80 1zj6_A ADP-ribosylation factor 100.0 2.1E-28 7.2E-33 201.5 13.7 164 103-273 15-183 (187)
81 1r8s_A ADP-ribosylation factor 100.0 1.1E-28 3.7E-33 198.2 11.6 157 105-268 1-162 (164)
82 1ksh_A ARF-like protein 2; sma 100.0 1.6E-27 5.6E-32 195.7 18.8 161 102-269 16-181 (186)
83 1f6b_A SAR1; gtpases, N-termin 100.0 5.7E-28 1.9E-32 201.3 16.2 158 102-266 23-197 (198)
84 3l0i_B RAS-related protein RAB 100.0 1.2E-29 4.2E-34 211.2 5.8 165 102-268 31-196 (199)
85 1upt_A ARL1, ADP-ribosylation 100.0 1.7E-27 5.8E-32 192.3 17.4 160 103-269 6-170 (171)
86 1m2o_B GTP-binding protein SAR 100.0 1.7E-27 5.7E-32 197.1 17.6 158 101-265 20-189 (190)
87 1zd9_A ADP-ribosylation factor 100.0 1.5E-27 5.2E-32 196.7 17.2 164 100-269 18-186 (188)
88 3gj0_A GTP-binding nuclear pro 100.0 3.9E-28 1.3E-32 205.3 13.8 168 99-271 10-178 (221)
89 2h17_A ADP-ribosylation factor 100.0 7E-28 2.4E-32 197.4 14.4 161 98-265 15-180 (181)
90 2b6h_A ADP-ribosylation factor 100.0 3.2E-28 1.1E-32 201.8 11.6 162 100-268 25-191 (192)
91 3t1o_A Gliding protein MGLA; G 100.0 3.8E-28 1.3E-32 200.5 11.8 164 101-270 11-194 (198)
92 1fzq_A ADP-ribosylation factor 100.0 2.7E-27 9.1E-32 194.3 16.0 160 102-268 14-178 (181)
93 2x77_A ADP-ribosylation factor 99.9 5.9E-28 2E-32 198.9 11.3 162 102-270 20-186 (189)
94 1moz_A ARL1, ADP-ribosylation 99.9 4.2E-27 1.4E-31 192.4 14.9 160 102-268 16-180 (183)
95 2wkq_A NPH1-1, RAS-related C3 99.9 1.2E-26 4E-31 207.4 19.0 165 103-269 154-331 (332)
96 3th5_A RAS-related C3 botulinu 99.9 2.9E-29 9.9E-34 209.6 0.0 164 101-266 27-203 (204)
97 3llu_A RAS-related GTP-binding 99.9 6.8E-27 2.3E-31 194.2 12.4 167 97-266 13-195 (196)
98 2f9l_A RAB11B, member RAS onco 99.9 2E-25 6.8E-30 185.7 19.0 164 103-268 4-168 (199)
99 2zej_A Dardarin, leucine-rich 99.9 6.6E-27 2.2E-31 192.4 9.3 165 104-271 2-181 (184)
100 2lkc_A Translation initiation 99.9 1.5E-25 5.2E-30 182.1 17.2 162 101-273 5-176 (178)
101 2wji_A Ferrous iron transport 99.9 9.7E-26 3.3E-30 182.1 14.5 154 103-267 2-164 (165)
102 2fh5_B SR-beta, signal recogni 99.9 1E-25 3.5E-30 189.2 15.1 161 102-266 5-214 (214)
103 3o47_A ADP-ribosylation factor 99.9 1.1E-25 3.6E-30 202.1 15.2 163 100-269 161-328 (329)
104 1oix_A RAS-related protein RAB 99.9 1.9E-24 6.5E-29 178.9 19.2 163 102-266 27-190 (191)
105 3c5h_A Glucocorticoid receptor 99.9 4.8E-26 1.6E-30 197.3 8.7 165 100-267 15-254 (255)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 5.2E-25 1.8E-29 195.8 15.2 163 103-267 2-180 (307)
107 3lvq_E ARF-GAP with SH3 domain 99.9 1.1E-24 3.7E-29 205.9 18.1 165 100-274 318-490 (497)
108 2qu8_A Putative nucleolar GTP- 99.9 3.6E-24 1.2E-28 182.0 17.6 162 102-269 27-206 (228)
109 2gj8_A MNME, tRNA modification 99.9 5.7E-25 1.9E-29 179.1 12.0 156 103-270 3-168 (172)
110 2dyk_A GTP-binding protein; GT 99.9 1.8E-24 6.1E-29 172.8 14.2 150 105-267 2-161 (161)
111 3iev_A GTP-binding protein ERA 99.9 8.9E-24 3.1E-28 187.9 19.4 165 100-271 6-185 (308)
112 2wjg_A FEOB, ferrous iron tran 99.9 2E-24 7E-29 177.3 12.9 159 101-270 4-171 (188)
113 2cxx_A Probable GTP-binding pr 99.9 9.4E-25 3.2E-29 179.3 9.7 159 105-272 2-188 (190)
114 1svi_A GTP-binding protein YSX 99.9 2.3E-24 7.8E-29 178.0 11.2 156 102-267 21-194 (195)
115 3pqc_A Probable GTP-binding pr 99.9 1.3E-23 4.5E-28 172.9 13.5 161 100-268 19-194 (195)
116 3a1s_A Iron(II) transport prot 99.9 2.3E-23 7.9E-28 180.7 15.3 156 102-268 3-167 (258)
117 3r7w_B Gtpase2, GTP-binding pr 99.9 1.3E-24 4.4E-29 192.9 5.7 155 106-268 1-174 (331)
118 3dpu_A RAB family protein; roc 99.9 2.1E-23 7.2E-28 198.7 13.2 165 101-271 38-211 (535)
119 3b1v_A Ferrous iron uptake tra 99.9 1.7E-23 5.7E-28 182.9 11.2 154 103-268 2-164 (272)
120 3i8s_A Ferrous iron transport 99.9 9.1E-24 3.1E-28 184.8 9.3 156 103-269 2-170 (274)
121 3iby_A Ferrous iron transport 99.9 1.7E-23 6E-28 181.3 9.1 150 105-265 2-164 (256)
122 4dhe_A Probable GTP-binding pr 99.9 5.9E-23 2E-27 173.3 11.1 166 101-272 26-215 (223)
123 3gee_A MNME, tRNA modification 99.9 3.1E-22 1.1E-26 187.4 17.0 156 103-267 232-397 (476)
124 3k53_A Ferrous iron transport 99.9 1.7E-22 5.7E-27 176.4 13.8 158 103-270 2-168 (271)
125 1wf3_A GTP-binding protein; GT 99.9 3.7E-22 1.3E-26 176.8 15.5 158 102-270 5-175 (301)
126 2hjg_A GTP-binding protein ENG 99.9 6.9E-23 2.4E-27 190.5 11.2 159 102-268 173-349 (436)
127 4dcu_A GTP-binding protein ENG 99.9 4E-22 1.4E-26 186.4 12.8 160 102-269 193-370 (456)
128 3sjy_A Translation initiation 99.9 6.4E-21 2.2E-25 175.5 19.5 172 102-278 6-202 (403)
129 3cb4_D GTP-binding protein LEP 99.9 4E-21 1.4E-25 184.1 17.3 167 103-277 3-191 (599)
130 1nrj_B SR-beta, signal recogni 99.9 1.8E-22 6.1E-27 169.9 6.6 144 102-254 10-170 (218)
131 2ywe_A GTP-binding protein LEP 99.9 4.8E-21 1.6E-25 183.3 17.3 167 103-277 5-193 (600)
132 3qq5_A Small GTP-binding prote 99.9 1.9E-22 6.4E-27 186.1 7.2 159 100-269 30-197 (423)
133 1xzp_A Probable tRNA modificat 99.9 1.6E-21 5.3E-26 182.8 13.5 151 104-267 243-404 (482)
134 3izy_P Translation initiation 99.9 1.8E-23 6.1E-28 197.7 -0.3 160 103-269 3-169 (537)
135 1mky_A Probable GTP-binding pr 99.9 4.5E-21 1.5E-25 178.4 15.9 154 105-270 2-168 (439)
136 1wb1_A Translation elongation 99.9 3E-21 1E-25 181.4 14.4 163 100-269 15-190 (482)
137 1s0u_A EIF-2-gamma, translatio 99.9 3E-20 1E-24 171.3 19.3 172 103-277 7-207 (408)
138 1lnz_A SPO0B-associated GTP-bi 99.8 1.7E-21 5.9E-26 175.2 10.0 160 106-271 160-333 (342)
139 2e87_A Hypothetical protein PH 99.8 3.8E-20 1.3E-24 167.8 18.3 159 103-268 166-336 (357)
140 1ega_A Protein (GTP-binding pr 99.8 1.4E-20 4.9E-25 166.7 15.1 160 102-270 6-177 (301)
141 3j2k_7 ERF3, eukaryotic polype 99.8 2.9E-20 9.9E-25 172.9 17.6 157 101-260 14-217 (439)
142 2hjg_A GTP-binding protein ENG 99.8 3.4E-21 1.2E-25 179.1 10.3 154 104-270 3-167 (436)
143 2c78_A Elongation factor TU-A; 99.8 1.2E-20 4.3E-25 173.7 13.3 170 102-278 9-222 (405)
144 1zo1_I IF2, translation initia 99.8 1.8E-22 6.2E-27 189.3 0.6 157 102-265 2-164 (501)
145 3geh_A MNME, tRNA modification 99.8 7E-21 2.4E-25 177.6 10.8 154 103-270 223-386 (462)
146 1mky_A Probable GTP-binding pr 99.8 4.1E-20 1.4E-24 172.0 15.8 158 103-268 179-355 (439)
147 1kk1_A EIF2gamma; initiation o 99.8 5.5E-20 1.9E-24 169.7 16.4 171 102-276 8-208 (410)
148 1d2e_A Elongation factor TU (E 99.8 1.6E-20 5.5E-25 172.5 12.2 169 103-278 2-205 (397)
149 3tr5_A RF-3, peptide chain rel 99.8 7.8E-20 2.7E-24 173.2 16.4 114 103-223 12-148 (528)
150 1g7s_A Translation initiation 99.8 6.3E-20 2.2E-24 175.9 15.1 161 102-267 3-217 (594)
151 1cip_A Protein (guanine nucleo 99.8 2.4E-20 8.2E-25 168.3 11.2 126 143-270 186-346 (353)
152 2xtp_A GTPase IMAP family memb 99.8 6.2E-20 2.1E-24 158.9 12.9 165 100-270 18-210 (260)
153 1zun_B Sulfate adenylate trans 99.8 9.2E-20 3.2E-24 169.3 14.7 150 102-258 22-214 (434)
154 3p26_A Elongation factor 1 alp 99.8 6.8E-20 2.3E-24 172.4 13.4 154 102-257 31-227 (483)
155 3lxx_A GTPase IMAP family memb 99.8 2.7E-19 9.2E-24 153.0 16.0 165 100-269 25-215 (239)
156 2qtf_A Protein HFLX, GTP-bindi 99.8 2.2E-19 7.5E-24 162.9 14.7 164 105-272 179-358 (364)
157 3ohm_A Guanine nucleotide-bind 99.8 2.7E-19 9.2E-24 159.4 13.0 128 142-271 159-321 (327)
158 3lxw_A GTPase IMAP family memb 99.8 7.7E-19 2.6E-23 151.2 14.8 165 102-270 19-210 (247)
159 2elf_A Protein translation elo 99.8 1.5E-19 5.3E-24 164.3 9.4 146 106-268 23-180 (370)
160 2xtz_A Guanine nucleotide-bind 99.8 2.5E-19 8.4E-24 161.7 10.6 120 150-269 181-346 (354)
161 4dcu_A GTP-binding protein ENG 99.8 9.1E-20 3.1E-24 170.4 7.9 158 100-270 19-187 (456)
162 1r5b_A Eukaryotic peptide chai 99.8 2.1E-20 7.2E-25 175.1 3.4 155 102-259 41-243 (467)
163 1jny_A EF-1-alpha, elongation 99.8 8.5E-20 2.9E-24 169.6 7.4 153 103-259 5-204 (435)
164 3avx_A Elongation factor TS, e 99.8 6.4E-19 2.2E-23 176.7 14.0 171 101-278 293-496 (1289)
165 3izq_1 HBS1P, elongation facto 99.8 3.2E-19 1.1E-23 171.8 11.3 155 102-258 165-362 (611)
166 1f60_A Elongation factor EEF1A 99.8 7.3E-19 2.5E-23 164.2 12.9 151 102-258 5-202 (458)
167 2ged_A SR-beta, signal recogni 99.8 8E-19 2.7E-23 144.4 9.8 114 102-223 46-170 (193)
168 3mca_A HBS1, elongation factor 99.8 6E-20 2E-24 176.4 3.3 161 101-267 174-396 (592)
169 1zcb_A G alpha I/13; GTP-bindi 99.8 1.4E-18 4.8E-23 157.3 11.8 125 144-270 195-355 (362)
170 3t5d_A Septin-7; GTP-binding p 99.8 4.9E-19 1.7E-23 154.7 8.4 160 103-268 7-204 (274)
171 4fid_A G protein alpha subunit 99.7 4.4E-18 1.5E-22 152.2 11.1 124 143-268 154-328 (340)
172 1dar_A EF-G, elongation factor 99.7 1.7E-17 5.8E-22 162.1 15.9 116 101-223 9-143 (691)
173 2qag_A Septin-2, protein NEDD5 99.7 2.7E-19 9.4E-24 162.2 2.6 159 103-268 36-233 (361)
174 2aka_B Dynamin-1; fusion prote 99.7 3.2E-18 1.1E-22 150.7 9.0 158 103-266 25-251 (299)
175 2h5e_A Peptide chain release f 99.7 5E-17 1.7E-21 154.1 17.2 114 103-223 12-148 (529)
176 1pui_A ENGB, probable GTP-bind 99.7 8.1E-18 2.8E-22 140.3 10.4 161 102-270 24-201 (210)
177 2dy1_A Elongation factor G; tr 99.7 5.2E-17 1.8E-21 158.1 16.9 113 103-222 8-139 (665)
178 2rdo_7 EF-G, elongation factor 99.7 6.8E-17 2.3E-21 158.0 16.6 117 102-223 8-148 (704)
179 3def_A T7I23.11 protein; chlor 99.7 8.2E-17 2.8E-21 139.6 15.2 118 103-222 35-164 (262)
180 2xex_A Elongation factor G; GT 99.7 5.4E-17 1.8E-21 158.6 14.8 115 102-223 8-141 (693)
181 3vqt_A RF-3, peptide chain rel 99.7 4.5E-16 1.5E-20 148.1 16.9 114 103-223 30-166 (548)
182 1jwy_B Dynamin A GTPase domain 99.7 2.6E-16 8.8E-21 139.6 12.9 114 153-271 132-265 (315)
183 1udx_A The GTP-binding protein 99.7 3.5E-16 1.2E-20 143.8 13.9 162 105-271 158-328 (416)
184 2j69_A Bacterial dynamin-like 99.7 2.1E-16 7.2E-21 154.4 12.7 162 103-268 68-325 (695)
185 1u0l_A Probable GTPase ENGC; p 99.7 3.1E-17 1.1E-21 145.2 5.5 134 119-264 32-169 (301)
186 1wxq_A GTP-binding protein; st 99.7 2.4E-17 8.2E-22 151.0 3.7 84 105-188 1-114 (397)
187 1h65_A Chloroplast outer envel 99.7 2.2E-15 7.6E-20 131.1 15.9 117 103-222 38-167 (270)
188 3t34_A Dynamin-related protein 99.7 2.1E-16 7.2E-21 143.2 9.3 157 104-265 34-258 (360)
189 2qnr_A Septin-2, protein NEDD5 99.6 1.1E-16 3.9E-21 141.5 5.1 160 103-269 17-215 (301)
190 3j25_A Tetracycline resistance 99.6 2.2E-16 7.4E-21 153.0 5.0 163 105-274 3-245 (638)
191 1azs_C GS-alpha; complex (lyas 99.6 1.3E-15 4.3E-20 139.2 9.6 125 143-269 210-386 (402)
192 1n0u_A EF-2, elongation factor 99.6 1.6E-15 5.5E-20 151.0 11.0 116 102-222 17-163 (842)
193 2qag_C Septin-7; cell cycle, c 99.6 1E-15 3.5E-20 140.8 7.7 159 103-267 30-226 (418)
194 4fn5_A EF-G 1, elongation fact 99.6 2E-14 7E-19 140.9 15.4 115 103-222 12-150 (709)
195 2x2e_A Dynamin-1; nitration, h 99.6 3E-16 1E-20 141.9 1.8 156 103-264 30-254 (353)
196 2wsm_A Hydrogenase expression/ 99.6 2.3E-15 8E-20 126.5 5.9 154 103-269 29-215 (221)
197 3p32_A Probable GTPase RV1496/ 99.6 2.7E-15 9.2E-20 135.7 6.3 103 152-268 172-284 (355)
198 1jal_A YCHF protein; nucleotid 99.6 6.6E-14 2.2E-18 126.2 15.1 161 105-266 3-277 (363)
199 2hf9_A Probable hydrogenase ni 99.5 4.1E-17 1.4E-21 137.8 -9.7 153 103-268 37-224 (226)
200 2www_A Methylmalonic aciduria 99.5 1.1E-14 3.7E-19 131.4 4.3 102 153-268 168-279 (349)
201 2dby_A GTP-binding protein; GD 99.5 1.8E-13 6.1E-18 123.9 11.8 83 105-187 2-111 (368)
202 2qpt_A EH domain-containing pr 99.5 6.1E-14 2.1E-18 133.5 8.6 116 103-222 64-231 (550)
203 1yrb_A ATP(GTP)binding protein 99.5 4.2E-13 1.4E-17 115.6 13.0 116 152-269 109-258 (262)
204 2p67_A LAO/AO transport system 99.4 1.2E-13 4.1E-18 124.2 7.0 102 153-267 150-260 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.4 2.4E-13 8.3E-18 132.7 8.9 161 103-271 50-284 (772)
206 4a9a_A Ribosome-interacting GT 99.4 5.4E-12 1.8E-16 114.3 15.9 153 104-260 72-240 (376)
207 3l82_B F-box only protein 4; T 99.3 6.4E-13 2.2E-17 109.8 2.9 108 159-270 109-225 (227)
208 2yv5_A YJEQ protein; hydrolase 99.3 2.3E-11 8E-16 107.4 11.6 120 135-264 44-165 (302)
209 2qm8_A GTPase/ATPase; G protei 99.3 1.6E-11 5.3E-16 110.1 10.1 102 153-267 149-260 (337)
210 3l2o_B F-box only protein 4; s 99.2 9.6E-12 3.3E-16 107.6 4.6 108 159-270 194-310 (312)
211 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 4.6E-10 1.6E-14 102.2 14.4 85 103-187 19-127 (392)
212 2ohf_A Protein OLA1, GTP-bindi 99.1 6.2E-11 2.1E-15 107.8 5.8 87 103-189 21-130 (396)
213 2j37_W Signal recognition part 98.7 4.5E-09 1.5E-13 98.6 4.6 148 103-265 100-310 (504)
214 3h2y_A GTPase family protein; 98.7 1.8E-08 6.1E-13 91.2 7.8 97 161-266 55-158 (368)
215 3ec1_A YQEH GTPase; atnos1, at 98.7 1.7E-09 5.9E-14 98.0 -0.6 140 104-255 162-318 (369)
216 1tq4_A IIGP1, interferon-induc 98.7 4E-07 1.4E-11 83.3 14.5 159 104-270 69-255 (413)
217 2qag_B Septin-6, protein NEDD5 98.7 1.6E-08 5.6E-13 92.7 5.0 139 104-250 42-218 (427)
218 1puj_A YLQF, conserved hypothe 98.6 3.4E-08 1.2E-12 86.1 5.9 101 156-268 3-106 (282)
219 3ec1_A YQEH GTPase; atnos1, at 98.6 5.6E-08 1.9E-12 88.0 6.9 98 161-267 57-161 (369)
220 3h2y_A GTPase family protein; 98.6 2.7E-09 9.3E-14 96.6 -2.8 134 105-250 161-312 (368)
221 3sop_A Neuronal-specific septi 98.5 3.7E-07 1.3E-11 79.0 9.5 113 104-222 2-153 (270)
222 3dm5_A SRP54, signal recogniti 98.3 2.2E-06 7.7E-11 78.9 9.1 92 152-257 183-280 (443)
223 2v3c_C SRP54, signal recogniti 98.2 2.9E-07 9.8E-12 84.9 2.2 83 152-247 181-271 (432)
224 3cnl_A YLQF, putative uncharac 98.2 9.1E-07 3.1E-11 76.2 3.4 93 159-264 4-97 (262)
225 1puj_A YLQF, conserved hypothe 98.1 2.4E-06 8.1E-11 74.4 5.9 57 102-163 118-176 (282)
226 3cnl_A YLQF, putative uncharac 98.0 1.9E-06 6.6E-11 74.2 3.1 55 105-164 100-156 (262)
227 1f5n_A Interferon-induced guan 98.0 7.6E-06 2.6E-10 78.1 6.2 60 103-164 37-103 (592)
228 3kl4_A SRP54, signal recogniti 97.9 1E-05 3.5E-10 74.4 5.6 90 152-255 180-277 (433)
229 1j8m_F SRP54, signal recogniti 97.9 1.6E-05 5.4E-10 69.7 6.4 92 152-258 181-281 (297)
230 1t9h_A YLOQ, probable GTPase E 97.8 4.9E-06 1.7E-10 73.2 1.9 91 166-260 77-169 (307)
231 3szr_A Interferon-induced GTP- 97.7 7.7E-05 2.6E-09 71.7 8.7 23 106-128 47-69 (608)
232 2rcn_A Probable GTPase ENGC; Y 97.7 8.8E-05 3E-09 66.5 7.7 87 171-262 126-213 (358)
233 3e70_C DPA, signal recognition 97.5 9.8E-05 3.4E-09 65.5 5.4 91 154-258 214-310 (328)
234 1bif_A 6-phosphofructo-2-kinas 97.4 1E-05 3.5E-10 75.4 -2.4 109 102-217 37-157 (469)
235 3q5d_A Atlastin-1; G protein, 97.1 0.00063 2.2E-08 62.7 5.8 24 103-126 66-89 (447)
236 2xxa_A Signal recognition part 97.0 0.0019 6.5E-08 59.4 8.6 83 152-247 184-273 (433)
237 1t9h_A YLOQ, probable GTPase E 96.4 0.0012 4.1E-08 57.9 2.5 23 105-127 174-196 (307)
238 1ye8_A Protein THEP1, hypothet 96.4 0.0017 5.9E-08 52.2 3.1 22 106-127 2-23 (178)
239 2ffh_A Protein (FFH); SRP54, s 96.3 0.0041 1.4E-07 57.0 5.6 84 152-248 181-271 (425)
240 1kgd_A CASK, peripheral plasma 96.3 0.0023 7.7E-08 51.3 3.2 23 105-127 6-28 (180)
241 2yv5_A YJEQ protein; hydrolase 96.3 0.0077 2.6E-07 52.5 6.9 22 104-125 165-186 (302)
242 1lvg_A Guanylate kinase, GMP k 96.2 0.0023 8E-08 52.1 2.9 22 105-126 5-26 (198)
243 3ney_A 55 kDa erythrocyte memb 96.2 0.0029 9.9E-08 51.8 3.3 28 100-127 15-42 (197)
244 3tr0_A Guanylate kinase, GMP k 96.1 0.0029 1E-07 51.3 2.9 23 105-127 8-30 (205)
245 3a00_A Guanylate kinase, GMP k 96.1 0.003 1E-07 50.8 2.8 20 107-126 4-23 (186)
246 3c8u_A Fructokinase; YP_612366 96.0 0.0037 1.3E-07 51.2 3.2 25 103-127 21-45 (208)
247 1znw_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 51.3 2.8 23 105-127 21-43 (207)
248 4gp7_A Metallophosphoesterase; 95.9 0.0037 1.2E-07 49.7 2.7 22 105-126 10-31 (171)
249 1zp6_A Hypothetical protein AT 95.9 0.0048 1.6E-07 49.4 3.4 24 104-127 9-32 (191)
250 1s96_A Guanylate kinase, GMP k 95.9 0.004 1.4E-07 51.8 2.9 24 104-127 16-39 (219)
251 1z6g_A Guanylate kinase; struc 95.9 0.004 1.4E-07 51.5 2.8 23 105-127 24-46 (218)
252 3tau_A Guanylate kinase, GMP k 95.8 0.0048 1.7E-07 50.6 2.9 24 104-127 8-31 (208)
253 1htw_A HI0065; nucleotide-bind 95.7 0.0053 1.8E-07 48.3 2.8 24 105-128 34-57 (158)
254 1ex7_A Guanylate kinase; subst 95.7 0.0059 2E-07 49.4 3.1 21 107-127 4-24 (186)
255 3tif_A Uncharacterized ABC tra 95.7 0.0056 1.9E-07 51.4 2.9 23 105-127 32-54 (235)
256 2j41_A Guanylate kinase; GMP, 95.6 0.0063 2.1E-07 49.3 3.2 25 104-128 6-30 (207)
257 1kag_A SKI, shikimate kinase I 95.6 0.006 2.1E-07 48.0 2.9 22 105-126 5-26 (173)
258 3asz_A Uridine kinase; cytidin 95.6 0.0064 2.2E-07 49.6 3.1 24 103-126 5-28 (211)
259 1knq_A Gluconate kinase; ALFA/ 95.6 0.0088 3E-07 47.2 3.8 24 103-126 7-30 (175)
260 2cdn_A Adenylate kinase; phosp 95.6 0.0087 3E-07 48.5 3.7 27 100-126 16-42 (201)
261 2pcj_A ABC transporter, lipopr 95.5 0.0063 2.1E-07 50.7 2.7 22 106-127 32-53 (224)
262 2onk_A Molybdate/tungstate ABC 95.5 0.0074 2.5E-07 50.9 3.1 22 106-127 26-47 (240)
263 2rcn_A Probable GTPase ENGC; Y 95.5 0.0077 2.6E-07 53.8 3.4 24 105-128 216-239 (358)
264 2bdt_A BH3686; alpha-beta prot 95.5 0.0069 2.4E-07 48.5 2.8 21 106-126 4-24 (189)
265 3lw7_A Adenylate kinase relate 95.5 0.0078 2.7E-07 47.0 3.1 20 105-124 2-21 (179)
266 2bbw_A Adenylate kinase 4, AK4 95.5 0.0084 2.9E-07 50.4 3.4 22 104-125 27-48 (246)
267 2qor_A Guanylate kinase; phosp 95.5 0.0072 2.5E-07 49.2 2.9 23 105-127 13-35 (204)
268 1kht_A Adenylate kinase; phosp 95.4 0.0086 2.9E-07 47.7 3.2 23 104-126 3-25 (192)
269 3kb2_A SPBC2 prophage-derived 95.4 0.0074 2.5E-07 47.2 2.8 21 106-126 3-23 (173)
270 4eun_A Thermoresistant glucoki 95.4 0.0078 2.7E-07 48.9 2.9 23 104-126 29-51 (200)
271 1b0u_A Histidine permease; ABC 95.4 0.0078 2.7E-07 51.4 3.0 22 106-127 34-55 (262)
272 1sgw_A Putative ABC transporte 95.4 0.0082 2.8E-07 49.7 3.0 22 106-127 37-58 (214)
273 1ly1_A Polynucleotide kinase; 95.4 0.011 3.6E-07 46.7 3.6 22 105-126 3-24 (181)
274 2cbz_A Multidrug resistance-as 95.4 0.0087 3E-07 50.3 3.2 23 105-127 32-54 (237)
275 1tev_A UMP-CMP kinase; ploop, 95.4 0.011 3.6E-07 47.3 3.6 24 103-126 2-25 (196)
276 3gfo_A Cobalt import ATP-bindi 95.4 0.0081 2.8E-07 51.7 3.0 22 106-127 36-57 (275)
277 1mv5_A LMRA, multidrug resista 95.3 0.0092 3.1E-07 50.3 3.2 23 105-127 29-51 (243)
278 2plr_A DTMP kinase, probable t 95.3 0.012 4E-07 47.7 3.7 24 103-126 3-26 (213)
279 1g6h_A High-affinity branched- 95.3 0.0085 2.9E-07 51.0 2.9 23 105-127 34-56 (257)
280 3cm0_A Adenylate kinase; ATP-b 95.3 0.012 4.2E-07 46.8 3.7 24 103-126 3-26 (186)
281 2i3b_A HCR-ntpase, human cance 95.3 0.0077 2.6E-07 48.8 2.6 22 106-127 3-24 (189)
282 4g1u_C Hemin import ATP-bindin 95.3 0.0087 3E-07 51.2 3.0 23 105-127 38-60 (266)
283 2ff7_A Alpha-hemolysin translo 95.3 0.0094 3.2E-07 50.4 3.2 23 105-127 36-58 (247)
284 2pze_A Cystic fibrosis transme 95.3 0.0099 3.4E-07 49.6 3.2 23 105-127 35-57 (229)
285 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.0093 3.2E-07 52.7 3.2 23 105-127 172-194 (330)
286 1ukz_A Uridylate kinase; trans 95.3 0.016 5.4E-07 46.9 4.4 24 103-126 14-37 (203)
287 1qhx_A CPT, protein (chloramph 95.3 0.011 3.6E-07 46.8 3.2 22 105-126 4-25 (178)
288 1ji0_A ABC transporter; ATP bi 95.2 0.0093 3.2E-07 50.2 2.9 22 106-127 34-55 (240)
289 2olj_A Amino acid ABC transpor 95.2 0.0094 3.2E-07 50.9 3.0 22 106-127 52-73 (263)
290 2d2e_A SUFC protein; ABC-ATPas 95.2 0.01 3.5E-07 50.3 3.1 22 106-127 31-52 (250)
291 1vpl_A ABC transporter, ATP-bi 95.2 0.0099 3.4E-07 50.6 3.0 23 105-127 42-64 (256)
292 2ghi_A Transport protein; mult 95.2 0.011 3.7E-07 50.4 3.2 23 105-127 47-69 (260)
293 2qi9_C Vitamin B12 import ATP- 95.2 0.01 3.5E-07 50.3 3.0 22 106-127 28-49 (249)
294 3ec2_A DNA replication protein 95.2 0.0085 2.9E-07 47.6 2.3 23 105-127 39-61 (180)
295 2zu0_C Probable ATP-dependent 95.1 0.011 3.8E-07 50.6 3.1 22 106-127 48-69 (267)
296 2v9p_A Replication protein E1; 95.1 0.011 3.6E-07 51.8 3.0 23 104-126 126-148 (305)
297 2eyu_A Twitching motility prot 95.1 0.01 3.4E-07 50.7 2.8 23 104-126 25-47 (261)
298 2ihy_A ABC transporter, ATP-bi 95.1 0.012 4E-07 50.8 3.2 23 105-127 48-70 (279)
299 3aez_A Pantothenate kinase; tr 95.1 0.013 4.5E-07 51.3 3.6 24 103-126 89-112 (312)
300 1np6_A Molybdopterin-guanine d 95.1 0.011 3.8E-07 47.2 2.9 23 105-127 7-29 (174)
301 1y63_A LMAJ004144AAA protein; 95.1 0.014 4.7E-07 46.7 3.4 25 103-127 9-33 (184)
302 2ehv_A Hypothetical protein PH 95.1 0.011 3.9E-07 49.1 3.1 22 105-126 31-52 (251)
303 3t61_A Gluconokinase; PSI-biol 95.1 0.011 3.7E-07 47.9 2.8 22 105-126 19-40 (202)
304 1jjv_A Dephospho-COA kinase; P 95.1 0.014 4.9E-07 47.3 3.6 22 105-126 3-24 (206)
305 3fb4_A Adenylate kinase; psych 95.1 0.012 4E-07 48.2 3.0 21 106-126 2-22 (216)
306 3vaa_A Shikimate kinase, SK; s 95.1 0.012 4.2E-07 47.6 3.1 22 105-126 26-47 (199)
307 2ixe_A Antigen peptide transpo 95.1 0.012 4.1E-07 50.5 3.2 23 105-127 46-68 (271)
308 3uie_A Adenylyl-sulfate kinase 95.1 0.014 4.9E-07 47.2 3.5 25 103-127 24-48 (200)
309 1u0l_A Probable GTPase ENGC; p 95.1 0.011 3.6E-07 51.6 2.8 23 105-127 170-192 (301)
310 3lnc_A Guanylate kinase, GMP k 95.1 0.0076 2.6E-07 50.1 1.8 23 105-127 28-51 (231)
311 1cke_A CK, MSSA, protein (cyti 95.0 0.012 4.3E-07 48.3 3.1 22 105-126 6-27 (227)
312 2if2_A Dephospho-COA kinase; a 95.0 0.011 3.7E-07 47.9 2.7 21 106-126 3-23 (204)
313 3dl0_A Adenylate kinase; phosp 95.0 0.013 4.4E-07 48.0 3.1 21 106-126 2-22 (216)
314 2rhm_A Putative kinase; P-loop 95.0 0.015 5E-07 46.5 3.4 23 104-126 5-27 (193)
315 2nq2_C Hypothetical ABC transp 95.0 0.012 4E-07 50.0 2.9 22 106-127 33-54 (253)
316 2yz2_A Putative ABC transporte 95.0 0.012 4E-07 50.4 2.9 22 106-127 35-56 (266)
317 3b85_A Phosphate starvation-in 95.0 0.0089 3E-07 49.2 2.1 22 106-127 24-45 (208)
318 2qt1_A Nicotinamide riboside k 95.0 0.017 5.9E-07 46.9 3.8 25 103-127 20-44 (207)
319 2jaq_A Deoxyguanosine kinase; 95.0 0.013 4.6E-07 47.1 3.1 21 106-126 2-22 (205)
320 2jeo_A Uridine-cytidine kinase 95.0 0.015 5E-07 48.9 3.4 24 103-126 24-47 (245)
321 1nks_A Adenylate kinase; therm 95.0 0.015 5.1E-07 46.3 3.3 21 106-126 3-23 (194)
322 4a74_A DNA repair and recombin 94.9 0.011 3.8E-07 48.5 2.5 23 105-127 26-48 (231)
323 2f1r_A Molybdopterin-guanine d 94.9 0.0076 2.6E-07 48.0 1.4 22 106-127 4-25 (171)
324 2yvu_A Probable adenylyl-sulfa 94.9 0.02 6.9E-07 45.6 4.0 24 103-126 12-35 (186)
325 2pjz_A Hypothetical protein ST 94.9 0.015 5E-07 49.7 3.2 23 106-128 32-54 (263)
326 1uf9_A TT1252 protein; P-loop, 94.9 0.016 5.4E-07 46.7 3.3 26 102-127 6-31 (203)
327 3n70_A Transport activator; si 94.8 0.059 2E-06 41.2 6.3 23 105-127 25-47 (145)
328 1ak2_A Adenylate kinase isoenz 94.8 0.017 5.8E-07 48.0 3.4 24 103-126 15-38 (233)
329 3tlx_A Adenylate kinase 2; str 94.8 0.02 6.7E-07 48.1 3.8 24 103-126 28-51 (243)
330 3nh6_A ATP-binding cassette SU 94.8 0.012 4.2E-07 51.4 2.5 24 104-127 80-103 (306)
331 1lw7_A Transcriptional regulat 94.8 0.014 4.9E-07 52.1 3.0 24 104-127 170-193 (365)
332 2v54_A DTMP kinase, thymidylat 94.7 0.018 6E-07 46.5 3.2 24 104-127 4-27 (204)
333 1aky_A Adenylate kinase; ATP:A 94.7 0.018 6.2E-07 47.3 3.3 23 104-126 4-26 (220)
334 1odf_A YGR205W, hypothetical 3 94.7 0.02 6.9E-07 49.6 3.7 24 103-126 30-53 (290)
335 2vli_A Antibiotic resistance p 94.7 0.012 3.9E-07 46.7 1.9 24 103-126 4-27 (183)
336 3trf_A Shikimate kinase, SK; a 94.7 0.019 6.4E-07 45.6 3.1 22 105-126 6-27 (185)
337 1rz3_A Hypothetical protein rb 94.7 0.02 6.9E-07 46.4 3.4 24 103-126 21-44 (201)
338 3tqc_A Pantothenate kinase; bi 94.6 0.022 7.4E-07 50.2 3.7 24 103-126 91-114 (321)
339 3iij_A Coilin-interacting nucl 94.6 0.02 6.8E-07 45.4 3.1 23 104-126 11-33 (180)
340 2wwf_A Thymidilate kinase, put 94.6 0.025 8.6E-07 45.9 3.8 24 103-126 9-32 (212)
341 2bbs_A Cystic fibrosis transme 94.5 0.018 6.1E-07 49.9 2.9 23 105-127 65-87 (290)
342 2c95_A Adenylate kinase 1; tra 94.5 0.02 6.9E-07 45.7 3.0 23 104-126 9-31 (196)
343 3fvq_A Fe(3+) IONS import ATP- 94.5 0.017 5.9E-07 51.6 2.8 22 106-127 32-53 (359)
344 1e4v_A Adenylate kinase; trans 94.5 0.019 6.4E-07 47.0 2.8 21 106-126 2-22 (214)
345 3sr0_A Adenylate kinase; phosp 94.5 0.021 7.2E-07 46.9 3.1 21 106-126 2-22 (206)
346 1sq5_A Pantothenate kinase; P- 94.5 0.022 7.4E-07 49.7 3.4 24 103-126 79-102 (308)
347 1zd8_A GTP:AMP phosphotransfer 94.5 0.02 6.8E-07 47.4 2.9 23 104-126 7-29 (227)
348 1z47_A CYSA, putative ABC-tran 94.5 0.02 6.8E-07 51.1 3.1 22 106-127 43-64 (355)
349 2pt5_A Shikimate kinase, SK; a 94.4 0.023 7.8E-07 44.3 3.1 21 106-126 2-22 (168)
350 2kjq_A DNAA-related protein; s 94.4 0.013 4.3E-07 45.5 1.5 24 104-127 36-59 (149)
351 3umf_A Adenylate kinase; rossm 94.4 0.027 9.1E-07 46.7 3.6 24 103-126 27-51 (217)
352 2x8a_A Nuclear valosin-contain 94.4 0.019 6.6E-07 49.2 2.8 20 107-126 47-66 (274)
353 3tui_C Methionine import ATP-b 94.4 0.021 7.2E-07 51.1 3.1 23 105-127 55-77 (366)
354 2yyz_A Sugar ABC transporter, 94.4 0.021 7.1E-07 51.1 3.1 22 106-127 31-52 (359)
355 1gvn_B Zeta; postsegregational 94.4 0.025 8.6E-07 48.8 3.5 24 103-126 32-55 (287)
356 2pez_A Bifunctional 3'-phospho 94.4 0.027 9.1E-07 44.6 3.4 24 103-126 4-27 (179)
357 2it1_A 362AA long hypothetical 94.4 0.021 7.3E-07 51.0 3.1 22 106-127 31-52 (362)
358 1nn5_A Similar to deoxythymidy 94.4 0.023 7.9E-07 46.1 3.1 23 104-126 9-31 (215)
359 1via_A Shikimate kinase; struc 94.4 0.021 7.2E-07 45.0 2.7 21 106-126 6-26 (175)
360 1ixz_A ATP-dependent metallopr 94.4 0.021 7.2E-07 48.0 2.9 21 107-127 52-72 (254)
361 3jvv_A Twitching mobility prot 94.3 0.02 6.8E-07 51.1 2.8 21 106-126 125-145 (356)
362 1xjc_A MOBB protein homolog; s 94.3 0.025 8.4E-07 45.0 3.0 22 105-126 5-26 (169)
363 3rlf_A Maltose/maltodextrin im 94.3 0.023 7.8E-07 51.2 3.1 22 106-127 31-52 (381)
364 1g29_1 MALK, maltose transport 94.3 0.023 7.7E-07 51.1 3.1 22 106-127 31-52 (372)
365 1jbk_A CLPB protein; beta barr 94.3 0.023 7.9E-07 44.7 2.9 23 105-127 44-66 (195)
366 1v43_A Sugar-binding transport 94.3 0.023 7.9E-07 51.0 3.1 22 106-127 39-60 (372)
367 2vp4_A Deoxynucleoside kinase; 94.3 0.026 8.9E-07 46.9 3.3 26 102-127 18-43 (230)
368 4e22_A Cytidylate kinase; P-lo 94.3 0.027 9.2E-07 47.6 3.3 23 103-125 26-48 (252)
369 3d31_A Sulfate/molybdate ABC t 94.2 0.02 6.7E-07 51.0 2.5 22 106-127 28-49 (348)
370 1rj9_A FTSY, signal recognitio 94.2 0.023 7.7E-07 49.6 2.8 90 154-257 187-288 (304)
371 1zak_A Adenylate kinase; ATP:A 94.2 0.02 7E-07 47.0 2.4 22 105-126 6-27 (222)
372 1gtv_A TMK, thymidylate kinase 94.2 0.011 3.7E-07 48.2 0.7 21 106-126 2-22 (214)
373 2z0h_A DTMP kinase, thymidylat 94.2 0.025 8.4E-07 45.3 2.8 21 106-126 2-22 (197)
374 3be4_A Adenylate kinase; malar 94.1 0.027 9.2E-07 46.3 3.0 23 104-126 5-27 (217)
375 2gza_A Type IV secretion syste 94.1 0.023 7.8E-07 50.8 2.8 23 105-127 176-198 (361)
376 2pbr_A DTMP kinase, thymidylat 94.1 0.027 9.2E-07 44.9 2.9 21 106-126 2-22 (195)
377 2bwj_A Adenylate kinase 5; pho 94.1 0.024 8.3E-07 45.4 2.7 22 105-126 13-34 (199)
378 2ze6_A Isopentenyl transferase 94.1 0.026 8.7E-07 47.8 2.9 21 106-126 3-23 (253)
379 1vht_A Dephospho-COA kinase; s 94.1 0.034 1.2E-06 45.5 3.5 23 104-126 4-26 (218)
380 1sxj_E Activator 1 40 kDa subu 94.1 0.14 4.7E-06 45.0 7.8 20 107-126 39-58 (354)
381 2xb4_A Adenylate kinase; ATP-b 94.0 0.031 1E-06 46.2 3.2 21 106-126 2-22 (223)
382 2w0m_A SSO2452; RECA, SSPF, un 94.0 0.029 1E-06 45.9 3.0 21 106-126 25-45 (235)
383 3b9q_A Chloroplast SRP recepto 94.0 0.027 9.2E-07 49.1 2.9 24 103-126 99-122 (302)
384 2p5t_B PEZT; postsegregational 94.0 0.029 1E-06 47.3 3.1 24 103-126 31-54 (253)
385 2ewv_A Twitching motility prot 94.0 0.028 9.5E-07 50.5 3.0 23 104-126 136-158 (372)
386 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.037 1.3E-06 46.9 3.6 22 105-126 5-26 (260)
387 1qf9_A UMP/CMP kinase, protein 93.9 0.041 1.4E-06 43.6 3.7 22 105-126 7-28 (194)
388 1e6c_A Shikimate kinase; phosp 93.9 0.032 1.1E-06 43.6 3.0 21 106-126 4-24 (173)
389 3kta_A Chromosome segregation 93.9 0.029 1E-06 44.4 2.8 21 106-126 28-48 (182)
390 2f6r_A COA synthase, bifunctio 93.9 0.07 2.4E-06 45.8 5.3 25 102-126 73-97 (281)
391 1in4_A RUVB, holliday junction 93.9 0.028 9.6E-07 49.5 2.8 22 106-127 53-74 (334)
392 1iy2_A ATP-dependent metallopr 93.9 0.03 1E-06 47.8 2.9 21 107-127 76-96 (278)
393 3co5_A Putative two-component 93.9 0.085 2.9E-06 40.2 5.2 22 106-127 29-50 (143)
394 1oxx_K GLCV, glucose, ABC tran 93.9 0.019 6.7E-07 51.1 1.7 22 106-127 33-54 (353)
395 4ido_A Atlastin-1; GTPase, GTP 93.8 0.11 3.7E-06 47.8 6.6 23 103-125 66-88 (457)
396 3gd7_A Fusion complex of cysti 93.8 0.03 1E-06 50.6 2.8 23 105-127 48-70 (390)
397 3te6_A Regulatory protein SIR3 93.7 0.23 7.8E-06 43.5 8.3 24 104-127 45-68 (318)
398 1uj2_A Uridine-cytidine kinase 93.7 0.041 1.4E-06 46.3 3.5 24 103-126 21-44 (252)
399 2iyv_A Shikimate kinase, SK; t 93.7 0.037 1.3E-06 43.8 3.0 21 106-126 4-24 (184)
400 1p9r_A General secretion pathw 93.7 0.031 1.1E-06 51.0 2.8 23 105-127 168-190 (418)
401 4eaq_A DTMP kinase, thymidylat 93.6 0.052 1.8E-06 45.1 3.9 25 103-127 25-49 (229)
402 3fwy_A Light-independent proto 93.6 2.3 7.7E-05 37.0 14.5 84 152-245 164-248 (314)
403 3r20_A Cytidylate kinase; stru 93.6 0.041 1.4E-06 46.1 3.1 24 103-126 8-31 (233)
404 1m7g_A Adenylylsulfate kinase; 93.5 0.049 1.7E-06 44.4 3.5 23 104-126 25-47 (211)
405 2p65_A Hypothetical protein PF 93.5 0.03 1E-06 43.9 2.1 23 105-127 44-66 (187)
406 2oap_1 GSPE-2, type II secreti 93.5 0.034 1.2E-06 52.1 2.8 23 105-127 261-283 (511)
407 3qf7_A RAD50; ABC-ATPase, ATPa 93.5 0.16 5.6E-06 45.2 7.2 21 104-125 24-44 (365)
408 1cr0_A DNA primase/helicase; R 93.5 0.034 1.2E-06 47.9 2.5 22 106-127 37-58 (296)
409 1f2t_A RAD50 ABC-ATPase; DNA d 93.4 0.048 1.6E-06 42.2 3.1 21 106-126 25-45 (149)
410 2cvh_A DNA repair and recombin 93.4 0.04 1.4E-06 44.8 2.8 22 105-126 21-42 (220)
411 3bos_A Putative DNA replicatio 93.4 0.041 1.4E-06 45.2 2.8 24 104-127 52-75 (242)
412 1lv7_A FTSH; alpha/beta domain 93.4 0.041 1.4E-06 46.2 2.9 22 106-127 47-68 (257)
413 1n0w_A DNA repair protein RAD5 93.4 0.042 1.4E-06 45.4 2.9 23 105-127 25-47 (243)
414 1zuh_A Shikimate kinase; alpha 93.3 0.052 1.8E-06 42.4 3.2 21 106-126 9-29 (168)
415 1q3t_A Cytidylate kinase; nucl 93.3 0.048 1.6E-06 45.4 3.1 26 101-126 13-38 (236)
416 2w58_A DNAI, primosome compone 93.3 0.044 1.5E-06 44.2 2.8 23 105-127 55-77 (202)
417 2obl_A ESCN; ATPase, hydrolase 93.2 0.042 1.4E-06 48.8 2.8 24 104-127 71-94 (347)
418 2og2_A Putative signal recogni 93.2 0.043 1.5E-06 49.0 2.9 90 154-257 243-344 (359)
419 3zvl_A Bifunctional polynucleo 93.1 0.11 3.6E-06 47.4 5.4 24 103-126 257-280 (416)
420 2grj_A Dephospho-COA kinase; T 93.1 0.064 2.2E-06 43.4 3.6 24 103-126 11-34 (192)
421 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.04 1.4E-06 50.9 2.5 24 104-127 138-161 (460)
422 2yhs_A FTSY, cell division pro 93.0 0.048 1.6E-06 50.7 2.9 141 103-257 292-479 (503)
423 1nij_A Hypothetical protein YJ 92.9 0.045 1.5E-06 47.9 2.5 23 105-127 5-27 (318)
424 4dzz_A Plasmid partitioning pr 92.9 0.17 5.7E-06 40.6 5.7 67 152-222 76-143 (206)
425 1njg_A DNA polymerase III subu 92.8 0.055 1.9E-06 44.1 2.8 21 106-126 47-67 (250)
426 3nwj_A ATSK2; P loop, shikimat 92.8 0.054 1.9E-06 45.8 2.8 23 104-126 48-70 (250)
427 2chg_A Replication factor C sm 92.7 0.059 2E-06 43.3 2.8 21 107-127 41-61 (226)
428 1yqt_A RNAse L inhibitor; ATP- 92.7 0.065 2.2E-06 50.5 3.4 25 103-127 46-70 (538)
429 3euj_A Chromosome partition pr 92.7 0.056 1.9E-06 50.2 2.9 21 106-126 31-51 (483)
430 1ltq_A Polynucleotide kinase; 92.7 0.075 2.6E-06 45.7 3.6 22 105-126 3-24 (301)
431 3b60_A Lipid A export ATP-bind 92.6 0.058 2E-06 51.3 2.9 23 105-127 370-392 (582)
432 3ake_A Cytidylate kinase; CMP 92.5 0.076 2.6E-06 42.7 3.2 21 106-126 4-24 (208)
433 3b5x_A Lipid A export ATP-bind 92.5 0.066 2.3E-06 50.9 3.2 24 104-127 369-392 (582)
434 1svm_A Large T antigen; AAA+ f 92.5 0.061 2.1E-06 48.4 2.8 22 105-126 170-191 (377)
435 2dpy_A FLII, flagellum-specifi 92.5 0.061 2.1E-06 49.4 2.8 25 103-127 156-180 (438)
436 3b9p_A CG5977-PA, isoform A; A 92.4 0.064 2.2E-06 46.0 2.8 23 105-127 55-77 (297)
437 3h4m_A Proteasome-activating n 92.4 0.065 2.2E-06 45.6 2.8 22 106-127 53-74 (285)
438 2qz4_A Paraplegin; AAA+, SPG7, 92.4 0.069 2.4E-06 44.7 2.9 22 105-126 40-61 (262)
439 1p5z_B DCK, deoxycytidine kina 92.2 0.059 2E-06 45.5 2.3 26 102-127 22-47 (263)
440 3ozx_A RNAse L inhibitor; ATP 92.2 0.071 2.4E-06 50.3 3.0 25 103-127 24-48 (538)
441 1tue_A Replication protein E1; 92.1 0.06 2E-06 44.2 2.1 21 106-126 60-80 (212)
442 3j16_B RLI1P; ribosome recycli 92.1 0.078 2.7E-06 50.7 3.1 25 103-127 102-126 (608)
443 3exa_A TRNA delta(2)-isopenten 92.0 0.1 3.6E-06 45.6 3.7 24 104-127 3-26 (322)
444 1l8q_A Chromosomal replication 92.0 0.076 2.6E-06 46.2 2.8 22 106-127 39-60 (324)
445 3t15_A Ribulose bisphosphate c 92.0 0.073 2.5E-06 45.9 2.6 23 105-127 37-59 (293)
446 3gmt_A Adenylate kinase; ssgci 92.0 0.095 3.3E-06 43.7 3.2 24 103-126 7-30 (230)
447 3syl_A Protein CBBX; photosynt 92.0 0.1 3.4E-06 44.9 3.5 23 104-126 67-89 (309)
448 1nlf_A Regulatory protein REPA 91.9 0.078 2.7E-06 45.2 2.7 22 105-126 31-52 (279)
449 3cf0_A Transitional endoplasmi 91.9 0.079 2.7E-06 45.8 2.8 22 106-127 51-72 (301)
450 2h92_A Cytidylate kinase; ross 91.9 0.073 2.5E-06 43.4 2.4 23 104-126 3-25 (219)
451 2dr3_A UPF0273 protein PH0284; 91.8 0.085 2.9E-06 43.6 2.8 21 106-126 25-45 (247)
452 4edh_A DTMP kinase, thymidylat 91.8 0.11 3.8E-06 42.7 3.4 25 102-126 4-28 (213)
453 2qmh_A HPR kinase/phosphorylas 91.8 0.086 2.9E-06 43.0 2.7 25 103-127 33-57 (205)
454 2yl4_A ATP-binding cassette SU 91.8 0.06 2E-06 51.4 2.0 23 105-127 371-393 (595)
455 3pfi_A Holliday junction ATP-d 91.8 0.22 7.5E-06 43.4 5.5 22 106-127 57-78 (338)
456 3bk7_A ABC transporter ATP-bin 91.8 0.091 3.1E-06 50.3 3.2 24 104-127 117-140 (607)
457 1yqt_A RNAse L inhibitor; ATP- 91.7 0.099 3.4E-06 49.3 3.4 23 105-127 313-335 (538)
458 3ozx_A RNAse L inhibitor; ATP 91.7 0.087 3E-06 49.6 3.0 22 106-127 296-317 (538)
459 3qf4_B Uncharacterized ABC tra 91.7 0.066 2.3E-06 51.1 2.2 24 104-127 381-404 (598)
460 3uc9_A Increased recombination 91.7 0.1 3.6E-06 43.4 3.1 27 101-127 26-52 (233)
461 4a82_A Cystic fibrosis transme 91.7 0.06 2E-06 51.2 1.8 24 104-127 367-390 (578)
462 2qby_A CDC6 homolog 1, cell di 91.6 0.082 2.8E-06 46.6 2.6 23 105-127 46-68 (386)
463 1d2n_A N-ethylmaleimide-sensit 91.6 0.12 4.3E-06 43.6 3.6 25 103-127 63-87 (272)
464 3end_A Light-independent proto 91.5 1.2 4.1E-05 38.2 9.9 85 152-246 157-242 (307)
465 3qf4_A ABC transporter, ATP-bi 91.5 0.074 2.5E-06 50.7 2.3 23 105-127 370-392 (587)
466 3qks_A DNA double-strand break 91.5 0.11 3.8E-06 42.2 3.1 21 106-126 25-45 (203)
467 2px0_A Flagellar biosynthesis 91.4 0.096 3.3E-06 45.4 2.8 85 152-248 183-273 (296)
468 1ofh_A ATP-dependent HSL prote 91.4 0.099 3.4E-06 44.8 2.9 23 105-127 51-73 (310)
469 2ocp_A DGK, deoxyguanosine kin 91.4 0.13 4.3E-06 42.8 3.4 23 105-127 3-25 (241)
470 3bk7_A ABC transporter ATP-bin 91.3 0.11 3.9E-06 49.6 3.4 22 106-127 384-405 (607)
471 1hqc_A RUVB; extended AAA-ATPa 91.3 0.34 1.2E-05 41.8 6.2 21 106-126 40-60 (324)
472 1fnn_A CDC6P, cell division co 91.3 0.1 3.4E-06 46.3 2.9 22 106-127 46-67 (389)
473 1qhl_A Protein (cell division 91.1 0.023 7.7E-07 47.5 -1.5 21 107-127 30-50 (227)
474 4fcw_A Chaperone protein CLPB; 91.1 0.16 5.6E-06 43.6 3.9 23 105-127 48-70 (311)
475 1sxj_C Activator 1 40 kDa subu 91.1 0.11 3.7E-06 45.7 2.8 21 107-127 49-69 (340)
476 3crm_A TRNA delta(2)-isopenten 91.1 0.15 5E-06 44.8 3.6 22 105-126 6-27 (323)
477 1vma_A Cell division protein F 91.0 0.12 4E-06 45.1 2.9 91 153-257 188-290 (306)
478 3j16_B RLI1P; ribosome recycli 91.0 0.12 4.1E-06 49.4 3.2 22 106-127 380-401 (608)
479 3d3q_A TRNA delta(2)-isopenten 90.9 0.13 4.3E-06 45.6 3.0 22 105-126 8-29 (340)
480 1a7j_A Phosphoribulokinase; tr 90.7 0.065 2.2E-06 46.3 1.0 24 103-126 4-27 (290)
481 3a8t_A Adenylate isopentenyltr 90.7 0.18 6.1E-06 44.5 3.8 23 105-127 41-63 (339)
482 1xwi_A SKD1 protein; VPS4B, AA 90.6 0.13 4.3E-06 45.1 2.8 23 105-127 46-68 (322)
483 1pzn_A RAD51, DNA repair and r 90.6 0.12 4.3E-06 45.7 2.7 25 103-127 130-154 (349)
484 1sxj_D Activator 1 41 kDa subu 90.6 0.13 4.5E-06 45.0 2.8 21 107-127 61-81 (353)
485 4b4t_K 26S protease regulatory 90.5 0.13 4.6E-06 46.9 2.9 22 106-127 208-229 (428)
486 3cr8_A Sulfate adenylyltranfer 90.5 0.11 3.9E-06 49.0 2.4 25 103-127 368-392 (552)
487 2qen_A Walker-type ATPase; unk 90.5 0.14 4.7E-06 44.5 2.9 22 106-127 33-54 (350)
488 3eie_A Vacuolar protein sortin 90.4 0.13 4.6E-06 44.8 2.8 23 105-127 52-74 (322)
489 3lv8_A DTMP kinase, thymidylat 90.4 0.14 4.9E-06 42.8 2.8 26 101-126 24-49 (236)
490 2v1u_A Cell division control p 90.4 0.12 4.1E-06 45.6 2.4 23 105-127 45-67 (387)
491 3foz_A TRNA delta(2)-isopenten 90.3 0.21 7.3E-06 43.5 3.9 22 105-126 11-32 (316)
492 4b4t_M 26S protease regulatory 90.3 0.14 4.9E-06 46.8 2.9 23 105-127 216-238 (434)
493 2ga8_A Hypothetical 39.9 kDa p 90.3 0.17 5.9E-06 45.0 3.3 23 104-126 24-46 (359)
494 2r62_A Cell division protease 90.3 0.07 2.4E-06 45.0 0.7 20 107-126 47-66 (268)
495 2iw3_A Elongation factor 3A; a 90.1 0.17 5.7E-06 51.0 3.4 24 106-129 463-486 (986)
496 1azs_C GS-alpha; complex (lyas 90.1 0.21 7.2E-06 45.2 3.8 26 100-125 36-61 (402)
497 2qgz_A Helicase loader, putati 90.1 0.17 5.8E-06 44.0 3.1 24 104-127 152-175 (308)
498 2fna_A Conserved hypothetical 90.0 0.14 4.8E-06 44.6 2.5 22 106-127 32-53 (357)
499 3uk6_A RUVB-like 2; hexameric 90.0 0.14 4.8E-06 45.1 2.5 23 105-127 71-93 (368)
500 4b4t_L 26S protease subunit RP 89.9 0.16 5.5E-06 46.5 2.9 23 105-127 216-238 (437)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=1.8e-35 Score=250.54 Aligned_cols=168 Identities=35% Similarity=0.541 Sum_probs=143.9
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
..|++.+||+|+|++|||||||+++|..+.|...+.+|++ ++....+..++..+.+++|||+|+++|..++..|+++++
T Consensus 8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~ 87 (216)
T 4dkx_A 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA 87 (216)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence 3467889999999999999999999999999999999987 777788889999999999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++++|||++++.+++++..|+..+.... .+++|++||+||+|+. +.+.++.++++.+++.++++|++|||++|.||++
T Consensus 88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~-~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e 165 (216)
T 4dkx_A 88 AAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQ 165 (216)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHH
T ss_pred EEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchH-hcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHH
Confidence 9999999999999999999999988754 3589999999999997 6678899999999999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
+|+.|++.+..
T Consensus 166 ~F~~i~~~i~~ 176 (216)
T 4dkx_A 166 LFRRVAAALPG 176 (216)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 2
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.8e-31 Score=218.35 Aligned_cols=171 Identities=36% Similarity=0.613 Sum_probs=152.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++++......+..++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 46799999999999999999999999999999999888778888899999889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 162 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH-MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR 162 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch-hcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence 99999999999999999988876666689999999999997 56778888999999999999999999999999999999
Q ss_pred HHHHhhcCCCCc
Q psy10504 262 IVREMNFNPEKD 273 (286)
Q Consensus 262 i~~~i~~~~~~~ 273 (286)
|++.+.+.+...
T Consensus 163 l~~~~~~~~~~~ 174 (181)
T 3t5g_A 163 IILEAEKMDGAC 174 (181)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHhcCCc
Confidence 999998766443
No 3
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2e-31 Score=218.99 Aligned_cols=164 Identities=50% Similarity=0.894 Sum_probs=148.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|++|||||||+++|.++.+...+.+++.+.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 82 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 82 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEE
Confidence 57999999999999999999999999988899998888888888999999999999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+|++++.+++.+..|+..+.......++|+++|+||+|+. .+.......+.++...+++++++||++|.|++++|++|
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 160 (189)
T 4dsu_A 83 FAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP--SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL 160 (189)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS--SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc--ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence 9999999999999999999887767789999999999997 45567788889999999999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
.+.+.+
T Consensus 161 ~~~~~~ 166 (189)
T 4dsu_A 161 VREIRK 166 (189)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998753
No 4
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=226.55 Aligned_cols=182 Identities=36% Similarity=0.633 Sum_probs=146.2
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+..+.+||+++|++|+|||||+++|.++.+...+.++++.........++..+.+.+|||||++++..++..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34578999999999999999999999999998888888877777777778888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 178 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS-PEREVQAVEGKKLAESWGATFMESSARENQLTQGIF 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc-cccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 9999999999999999999998876556689999999999997 556677888899999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcCCCceecCccccC
Q psy10504 260 AEIVREMNFNPEKDNASFCWCSSCSIL 286 (286)
Q Consensus 260 ~~i~~~i~~~~~~~~~~~~~~~~c~~~ 286 (286)
++|.+.+.+.....+ ...+|.+|
T Consensus 179 ~~l~~~i~~~~~~~~----~~~~c~l~ 201 (201)
T 3oes_A 179 TKVIQEIARVENSYG----QERRCHLM 201 (201)
T ss_dssp HHHHHHHHHC-----------------
T ss_pred HHHHHHHHhhhhhhc----cccccccC
Confidence 999999987665543 23457765
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=4.5e-31 Score=216.32 Aligned_cols=168 Identities=45% Similarity=0.816 Sum_probs=154.6
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|+|||||+++|.++.+...+.++++.........++..+.+.+|||||++++..++..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 93 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF 93 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence 34578999999999999999999999999998898998877788888999998899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC-CCCcHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEM 258 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~-~~~gv~~l 258 (286)
++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++.++++++++||+ +|.|++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l 172 (183)
T 3kkq_A 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM-HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKT 172 (183)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS-TTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch-hccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHH
Confidence 9999999999999999999998876666789999999999997 566778888999999999999999999 99999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|++|.+.+.+
T Consensus 173 ~~~l~~~i~~ 182 (183)
T 3kkq_A 173 FHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 6
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.98 E-value=2.9e-31 Score=213.52 Aligned_cols=164 Identities=64% Similarity=1.053 Sum_probs=148.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|++|+|||||++++.++.+...+.+|++......+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999999888888888877777778888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l~~~ 261 (286)
+|++++.+++.+..|+..+......+++|+++|+||+|+. ..+.....+.+.+++.+ +.+++++||++|.|++++|++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE-DERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD 160 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc-ccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence 9999999999999999988886666789999999999997 44556677888888887 799999999999999999999
Q ss_pred HHHHhh
Q psy10504 262 IVREMN 267 (286)
Q Consensus 262 i~~~i~ 267 (286)
|.+.+.
T Consensus 161 l~~~i~ 166 (167)
T 1c1y_A 161 LVRQIN 166 (167)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998774
No 7
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.98 E-value=3.3e-31 Score=215.94 Aligned_cols=171 Identities=43% Similarity=0.743 Sum_probs=153.6
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
++.+.++|+++|++|+|||||+++|.++.+...+.+|++......+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 34578999999999999999999999999988899998877777888899888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE-SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988666666689999999999997 445667788888888899999999999999999999
Q ss_pred HHHHHHhhcCCC
Q psy10504 260 AEIVREMNFNPE 271 (286)
Q Consensus 260 ~~i~~~i~~~~~ 271 (286)
++|.+.+.+...
T Consensus 164 ~~l~~~~~~~~~ 175 (181)
T 2fn4_A 164 EQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc
Confidence 999999876443
No 8
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.98 E-value=3.7e-31 Score=212.53 Aligned_cols=165 Identities=74% Similarity=1.191 Sum_probs=150.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|++|+|||||++++.++.+...+.+++++.....+.+++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 57999999999999999999999999888888888877788888999988899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 160 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE-SEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI 160 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc-ccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence 9999999999999999988876666689999999999997 455667778888888899999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
.+.+.+
T Consensus 161 ~~~~~~ 166 (167)
T 1kao_A 161 VRQMNY 166 (167)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 998754
No 9
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.98 E-value=6e-31 Score=211.49 Aligned_cols=166 Identities=43% Similarity=0.763 Sum_probs=147.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
++.+||+++|++|+|||||++++.++.+...+.++++......+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 35799999999999999999999999988888888887777778889988889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+...+++..+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999998887666689999999999997 44556778888888889999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 10
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=6.2e-31 Score=219.27 Aligned_cols=169 Identities=42% Similarity=0.749 Sum_probs=151.8
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
..+++.++|+++|++|||||||+++|.++.+...+.+++++.....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 34567899999999999999999999999998888899888777888889988889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 167 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV 167 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc-ccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999998887655689999999999997 44556778888888889999999999999999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|++|++.+.+
T Consensus 168 ~~~l~~~i~~ 177 (206)
T 2bov_A 168 FFDLMREIRA 177 (206)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 11
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.1e-30 Score=215.26 Aligned_cols=167 Identities=23% Similarity=0.394 Sum_probs=145.2
Q ss_pred CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
....++.+||+++|++|||||||+++++++.+...+.+|.. .....+.+++..+.+.+|||+|++++. +++.+|
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eEEEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 34566889999999999999999999999998888877754 445788899999999999999998877 778899
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC-CCCCCCCHHHHHHHHHhcC-CCEEEEeCCCCCcH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA-SHQREVPTLDGQALAQSWG-CPFIEASAKNKTNV 255 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~~~~~-~~~~~vSa~~~~gv 255 (286)
++++|||++++.+++.+..|+..+......+++|+++|+||+|+. ...+.+...+.+.++...+ +++++|||++|.|+
T Consensus 88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv 167 (184)
T 3ihw_A 88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV 167 (184)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence 999999999999999999999998876544689999999999995 2456678888999999987 89999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q psy10504 256 NEMFAEIVREMNFNP 270 (286)
Q Consensus 256 ~~l~~~i~~~i~~~~ 270 (286)
+++|+++++.+.+..
T Consensus 168 ~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 168 ERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999886543
No 12
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=3.1e-30 Score=213.68 Aligned_cols=170 Identities=28% Similarity=0.484 Sum_probs=151.5
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|+|||||++++.++.+...+.+|++......+..++..+.+++|||||+++|..++..+++++|++
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 98 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV 98 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence 34578999999999999999999999999988899999888888888999999999999999999999999999999999
Q ss_pred EEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-CCCCCHHHHHHHHHhcCCC-EEEEeCCCCCcHH
Q psy10504 180 VVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-QREVPTLDGQALAQSWGCP-FIEASAKNKTNVN 256 (286)
Q Consensus 180 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~-~~~vSa~~~~gv~ 256 (286)
++|||++++.+++++ ..|+..+... .+++|+++|+||+|+.++ .+.+...+.+.+++..+++ ++++||++|.|++
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 176 (194)
T 3reg_A 99 LLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN 176 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHH
Confidence 999999999999997 6677777754 357999999999999743 4667888899999999988 9999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q psy10504 257 EMFAEIVREMNFNPE 271 (286)
Q Consensus 257 ~l~~~i~~~i~~~~~ 271 (286)
++|++|.+.+.+.+.
T Consensus 177 ~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 177 EVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999876553
No 13
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=210.71 Aligned_cols=166 Identities=33% Similarity=0.556 Sum_probs=133.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc--chhhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--FASMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--~~~~~~~~~~~~d~vi 180 (286)
+.+||+++|++|+|||||+++|.++.+...+.....+.....+.+++..+.+.+|||||++. +..++..+++.+|+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 56999999999999999999999987765555444466677788899888899999999988 6677888999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (175)
T 2nzj_A 83 IVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161 (175)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT-TTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc-cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence 999999999999999998888775445589999999999997 4456677778888888899999999999999999999
Q ss_pred HHHHHhhcC
Q psy10504 261 EIVREMNFN 269 (286)
Q Consensus 261 ~i~~~i~~~ 269 (286)
+|.+.+...
T Consensus 162 ~l~~~~~~~ 170 (175)
T 2nzj_A 162 GVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988653
No 14
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=4.5e-30 Score=209.61 Aligned_cols=170 Identities=34% Similarity=0.509 Sum_probs=146.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
+.+.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999888777666655 45566777888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 166 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLL-DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIF 166 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc-ccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHH
Confidence 99999999999999999998888753 4689999999999997 455667788888998999999999999999999999
Q ss_pred HHHHHHhhcCCCC
Q psy10504 260 AEIVREMNFNPEK 272 (286)
Q Consensus 260 ~~i~~~i~~~~~~ 272 (286)
++|.+.+.+.+..
T Consensus 167 ~~l~~~~~~~~~~ 179 (181)
T 2efe_B 167 YEIARRLPRVQPT 179 (181)
T ss_dssp HHHHHTCC-----
T ss_pred HHHHHHHHhcCCC
Confidence 9999998776543
No 15
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=1.1e-30 Score=213.98 Aligned_cols=169 Identities=42% Similarity=0.749 Sum_probs=151.5
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..++.+||+++|++|+|||||+++|.++.+...+.+++.......+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34578999999999999999999999999888888888877777888899888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.....+...+++..+++++++||+++.|++++|
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE-DKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 172 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence 9999999999999999999998887666689999999999997 445567788888899999999999999999999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
++|.+.+.+.
T Consensus 173 ~~l~~~i~~~ 182 (187)
T 2a9k_A 173 FDLMREIRAR 182 (187)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988653
No 16
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=1.2e-30 Score=220.20 Aligned_cols=176 Identities=21% Similarity=0.361 Sum_probs=147.9
Q ss_pred CCCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504 96 IDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN 175 (286)
Q Consensus 96 ~~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~ 175 (286)
......+..+||+++|++|||||||+++|.++.+...+.+|++......+.+++..+.+.+|||||+++|..++..+++.
T Consensus 19 ~~~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 98 (214)
T 3q3j_B 19 RAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSD 98 (214)
T ss_dssp --------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred cCCCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCC
Confidence 33445567899999999999999999999999999999999988777778888888889999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-
Q psy10504 176 GQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC- 242 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~- 242 (286)
+|++++|||++++.+++. +..|+..+... .+++|+++|+||+|+.++ .+.+...+...+++..++
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 176 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAE 176 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCS
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCC
Confidence 999999999999999999 68898888875 358999999999999732 366888899999999998
Q ss_pred CEEEEeCCCCCc-HHHHHHHHHHHhhcCCCCc
Q psy10504 243 PFIEASAKNKTN-VNEMFAEIVREMNFNPEKD 273 (286)
Q Consensus 243 ~~~~vSa~~~~g-v~~l~~~i~~~i~~~~~~~ 273 (286)
++++|||++|.| ++++|+++++.+.......
T Consensus 177 ~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~~ 208 (214)
T 3q3j_B 177 IYLEGSAFTSEKSIHSIFRTASMLCLNKPSPL 208 (214)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHC-----
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHhccCcCC
Confidence 999999999998 9999999999987665443
No 17
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.97 E-value=5.8e-31 Score=221.09 Aligned_cols=171 Identities=28% Similarity=0.514 Sum_probs=145.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 36799999999999999999999999998888899888877788888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-------CCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504 182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR-------EVPTLDGQALAQSWGC-PFIEASAKNK 252 (286)
Q Consensus 182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-------~~~~~~~~~~~~~~~~-~~~~vSa~~~ 252 (286)
|||++++.+++++. .|+..+.... +++|+++|+||+|+.+... .+...+.+.++...+. +++++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 99999999999987 7888887643 4899999999999863221 2467778888888885 9999999999
Q ss_pred CcHHHHHHHHHHHhhcCCCCcC
Q psy10504 253 TNVNEMFAEIVREMNFNPEKDN 274 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~~~~~ 274 (286)
.|++++|++|++.+.+.+...+
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~~ 186 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRKE 186 (212)
T ss_dssp TTHHHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHhhhhhhcc
Confidence 9999999999999877665444
No 18
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=215.59 Aligned_cols=167 Identities=37% Similarity=0.607 Sum_probs=144.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|||||||+++|.++.+...+.+|+++.....+.+++..+.+++|||||++++..+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 345789999999999999999999999999888999988777777888999999999999999998875 5789999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC-CCCCcHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA-KNKTNVN 256 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa-~~~~gv~ 256 (286)
++|||++++.+++.+..|+..+..... .+++|+++|+||+|+. ..+.+...+.+.+++..++++++||| ++|.|++
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA-QYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh-hcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999988876531 2489999999999997 45667788889999999999999999 8999999
Q ss_pred HHHHHHHHHhhc
Q psy10504 257 EMFAEIVREMNF 268 (286)
Q Consensus 257 ~l~~~i~~~i~~ 268 (286)
++|++|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 19
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=211.35 Aligned_cols=170 Identities=38% Similarity=0.591 Sum_probs=149.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...+||+++|++|+|||||+++|.++.+...+.++++ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 4679999999999999999999999988777766665 556677888998888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++|+
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999887753 4589999999999997 5666777888999999999999999999999999999
Q ss_pred HHHHHhhcCCCCc
Q psy10504 261 EIVREMNFNPEKD 273 (286)
Q Consensus 261 ~i~~~i~~~~~~~ 273 (286)
+|.+.+.+.....
T Consensus 172 ~l~~~i~~~~~~~ 184 (196)
T 3tkl_A 172 TMAAEIKKRMGPG 184 (196)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHhccc
Confidence 9999987654433
No 20
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.97 E-value=3.8e-30 Score=210.79 Aligned_cols=169 Identities=28% Similarity=0.497 Sum_probs=149.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
++.+||+++|++|+|||||+++|.++.+...+.+++.+.....+..++..+.+++|||||++++..++..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999999998888888888878888889999999999999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEe
Q psy10504 182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEAS 248 (286)
Q Consensus 182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vS 248 (286)
|||++++.+++++. .|+..+.... +++|+++|+||+|+.+. .+.+...+...+++..+. +++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999987 6877777642 48999999999999743 245677788888888886 999999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
|++|.|++++|++|.+.+.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred CCCccCHHHHHHHHHHHHhccccc
Confidence 999999999999999999776543
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=1.9e-30 Score=208.86 Aligned_cols=163 Identities=32% Similarity=0.488 Sum_probs=123.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVY 183 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~ 183 (286)
.+||+++|++|+|||||++++.+..+.. ..++.+......+.+++..+.+.+|||||++.+..++..+++.+|++++||
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 5799999999999999999998765442 334444555677788999999999999999999999999999999999999
Q ss_pred ECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 184 SLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 184 d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|++|.
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 159 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-RSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC-SSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc-cccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence 999999999999999998876556789999999999997 5567788888899999999999999999999999999999
Q ss_pred HHhhc
Q psy10504 264 REMNF 268 (286)
Q Consensus 264 ~~i~~ 268 (286)
+.+.+
T Consensus 160 ~~~~~ 164 (166)
T 3q72_A 160 RQIRL 164 (166)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98865
No 22
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1e-29 Score=203.68 Aligned_cols=164 Identities=49% Similarity=0.889 Sum_probs=148.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|++|+|||||++++.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 56899999999999999999999998888888888877778888899888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i 262 (286)
+|++++.+++.+..|+..+.......++|+++|+||+|+.+ +.....+.+.+++..+++++++||++|.|+++++++|
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA--RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh--cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999888776556899999999999973 4566778888889999999999999999999999999
Q ss_pred HHHhhc
Q psy10504 263 VREMNF 268 (286)
Q Consensus 263 ~~~i~~ 268 (286)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 998754
No 23
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=7.9e-30 Score=210.27 Aligned_cols=169 Identities=49% Similarity=0.865 Sum_probs=140.9
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..++.+||+++|++|||||||+++|.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 44678999999999999999999999998888888888877778888899888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++.+++++..|+..+.......++|+++|+||+|+.+ +.....+.+.+++..+++++++||++|.|++++|
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 174 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT--RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF 174 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC--CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc--ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999999888766556899999999999973 5566788888999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q psy10504 260 AEIVREMNFNP 270 (286)
Q Consensus 260 ~~i~~~i~~~~ 270 (286)
++|.+.+.+..
T Consensus 175 ~~l~~~~~~~~ 185 (190)
T 3con_A 175 YTLVREIRQYR 185 (190)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999887543
No 24
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=5.7e-30 Score=213.04 Aligned_cols=170 Identities=31% Similarity=0.459 Sum_probs=143.4
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh-hhhhcccCccE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-MRDLYIKNGQG 178 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-~~~~~~~~~d~ 178 (286)
....+||+++|++|||||||+++|.+..... ..+.++.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 3467999999999999999999997644322 233344566777788899999999999999998775 78889999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l 178 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc-ccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence 99999999999999999999988875544589999999999997 45667778888899999999999999999999999
Q ss_pred HHHHHHHhhcCCC
Q psy10504 259 FAEIVREMNFNPE 271 (286)
Q Consensus 259 ~~~i~~~i~~~~~ 271 (286)
|++|++.+.+...
T Consensus 179 f~~l~~~i~~~~~ 191 (195)
T 3cbq_A 179 FEGAVRQIRLRRG 191 (195)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHhcC
Confidence 9999999876543
No 25
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=4.5e-30 Score=212.33 Aligned_cols=169 Identities=34% Similarity=0.510 Sum_probs=144.9
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
....+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+++|||||++++..++..+++.+|
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 95 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA 95 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence 3445789999999999999999999999888776666654 555667888888888999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++++|+|++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|+++
T Consensus 96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 173 (191)
T 2a5j_A 96 GALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLE-SRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 173 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccC-CccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999888774 34589999999999997 4456677888889999999999999999999999
Q ss_pred HHHHHHHHhhcC
Q psy10504 258 MFAEIVREMNFN 269 (286)
Q Consensus 258 l~~~i~~~i~~~ 269 (286)
+|++|++.+.+.
T Consensus 174 l~~~l~~~i~~~ 185 (191)
T 2a5j_A 174 AFINTAKEIYRK 185 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
No 26
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.4e-30 Score=211.63 Aligned_cols=167 Identities=28% Similarity=0.493 Sum_probs=148.3
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+.+++..+.+.+|||||+++|..++..+++.+|++
T Consensus 14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 34477999999999999999999999999988888998887777888888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEE
Q psy10504 180 VVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIE 246 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~ 246 (286)
++|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+. .+.+...+...+++..+. ++++
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 94 LICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999997 688887764 348999999999999743 245777888889988887 9999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhc
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
|||++|.|++++|++|.+.+..
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 27
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=4.9e-30 Score=206.71 Aligned_cols=165 Identities=36% Similarity=0.562 Sum_probs=144.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 4679999999999999999999999888777766665 344566778888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 161 (170)
T 1r2q_A 84 VVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFM 161 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999988887753 4589999999999997 4455667788888888999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|.+.+.+
T Consensus 162 ~i~~~~~~ 169 (170)
T 1r2q_A 162 AIAKKLPK 169 (170)
T ss_dssp HHHHTSCC
T ss_pred HHHHHHhh
Confidence 99988754
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=214.68 Aligned_cols=169 Identities=31% Similarity=0.512 Sum_probs=142.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++..+.+.+|||||+++|..++..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 34679999999999999999999999988777777765 55567788888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCcHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM 258 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~gv~~l 258 (286)
++|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..++ ++++|||++|.|++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 183 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLS-ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccc-cccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999998887753 4589999999999997 4456677888889999998 9999999999999999
Q ss_pred HHHHHHHhhcCCC
Q psy10504 259 FAEIVREMNFNPE 271 (286)
Q Consensus 259 ~~~i~~~i~~~~~ 271 (286)
|++|++.+.+...
T Consensus 184 ~~~l~~~i~~~~~ 196 (201)
T 2hup_A 184 FLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcc
Confidence 9999999876443
No 29
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=214.54 Aligned_cols=168 Identities=30% Similarity=0.510 Sum_probs=148.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++..+.+++|||||+++|..++..+++.+|++
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 102 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANAL 102 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 34679999999999999999999999988877777765 55567788899888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+.+.+++..++++++|||++|.|++++|
T Consensus 103 i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 103 ILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLA-ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999887753 4578999999999997 445667778888888899999999999999999999
Q ss_pred HHHHHHhhcCC
Q psy10504 260 AEIVREMNFNP 270 (286)
Q Consensus 260 ~~i~~~i~~~~ 270 (286)
++|.+.+.+..
T Consensus 181 ~~l~~~i~~~~ 191 (201)
T 2ew1_A 181 LDLACRLISEA 191 (201)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999886543
No 30
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.1e-30 Score=212.58 Aligned_cols=165 Identities=44% Similarity=0.804 Sum_probs=146.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..++|+++|++|||||||+++|.++.+...+.++.+......+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 86 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILV 86 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEE
Confidence 56999999999999999999999998887788887766667777888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
||++++.+++.+..|+..+..... .+++|+++|+||+|+.+ +.....+...++..++++++++||++|.|++++|++
T Consensus 87 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (199)
T 2gf0_A 87 FSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ--REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE 164 (199)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS--CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc--cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence 999999999999988887776543 35789999999999973 556677788888889999999999999999999999
Q ss_pred HHHHhhcC
Q psy10504 262 IVREMNFN 269 (286)
Q Consensus 262 i~~~i~~~ 269 (286)
|.+.+.+.
T Consensus 165 l~~~~~~~ 172 (199)
T 2gf0_A 165 LLTLETRR 172 (199)
T ss_dssp HHHHCSSS
T ss_pred HHHHHhhh
Confidence 99987654
No 31
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.97 E-value=4.6e-30 Score=213.69 Aligned_cols=169 Identities=28% Similarity=0.462 Sum_probs=140.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|+|||||+++|.++.+...+.+|+++.....+..++..+.+.+|||||+++|..++..+++++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 34578999999999999999999999999888888998888778888899888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEE
Q psy10504 180 VVVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIE 246 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~ 246 (286)
++|||++++.+++++. .|+..+.... +++|+++|+||+|+.+. .+.+...+...+++..+. ++++
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 173 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE 173 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence 9999999999999997 6888877643 48999999999999742 356677888888888886 8999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
|||++|.|++++|++|++.+.+.+
T Consensus 174 ~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 174 CSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999886544
No 32
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=7.6e-30 Score=205.61 Aligned_cols=165 Identities=35% Similarity=0.565 Sum_probs=144.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+.+||+++|++|+|||||++++.++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 568999999999999999999999988777766665 4445667788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC--CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ--REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
|+|++++.+++++..|+..+.... .+++|+++|+||+|+.+.. +.+...+.+.+++..+++++++||++|.|++++|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999999998887753 4589999999999997332 5677778888888899999999999999999999
Q ss_pred HHHHHHhhc
Q psy10504 260 AEIVREMNF 268 (286)
Q Consensus 260 ~~i~~~i~~ 268 (286)
++|.+.+.+
T Consensus 161 ~~l~~~i~~ 169 (170)
T 1ek0_A 161 LGIGEKIPL 169 (170)
T ss_dssp HHHHTTSCC
T ss_pred HHHHHHHhh
Confidence 999987754
No 33
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.2e-29 Score=206.30 Aligned_cols=165 Identities=33% Similarity=0.488 Sum_probs=145.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988877777765 455667778888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 170 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLE-AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFL 170 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887753 3589999999999997 4455677788889999999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|++.+.+
T Consensus 171 ~l~~~i~~ 178 (179)
T 1z0f_A 171 EAAKKIYQ 178 (179)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHhh
Confidence 99998754
No 34
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=7.9e-30 Score=210.37 Aligned_cols=168 Identities=33% Similarity=0.532 Sum_probs=143.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-hhhhhcccCcc
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA-SMRDLYIKNGQ 177 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~-~~~~~~~~~~d 177 (286)
...+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++. .++..+++.+|
T Consensus 16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d 95 (189)
T 1z06_A 16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH 95 (189)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence 445789999999999999999999999888777766665 5566778888888889999999999998 88999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC---Cc
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK---TN 254 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~---~g 254 (286)
++++|+|++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.++...+++++++||+++ .|
T Consensus 96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR-SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-ccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 999999999999999999999998886556689999999999997 44566778888899999999999999999 99
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
++++|++|++.+.+
T Consensus 175 i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 175 VEAIFMTLAHKLKS 188 (189)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987754
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=5.6e-30 Score=208.50 Aligned_cols=169 Identities=33% Similarity=0.482 Sum_probs=145.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECC-eEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDK-APCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.+||+++|++|+|||||+++|.++.+...+.+|++ ++....+.+++ ..+.+++|||||++++..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 4679999999999999999999999888777667764 66677788876 567899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhC-CCCCc-EEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKG-SERVP-ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++|+|++++.+++.+..|+..+..... ..+.| +++|+||+|+. ..+.+..++.+.+++..+++++++||++|.|+++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 162 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE-HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL 162 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc-cccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999888876421 12445 89999999997 4455677788888888999999999999999999
Q ss_pred HHHHHHHHhhcCCC
Q psy10504 258 MFAEIVREMNFNPE 271 (286)
Q Consensus 258 l~~~i~~~i~~~~~ 271 (286)
+|++|.+.+.+.+.
T Consensus 163 l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 163 CFQKVAAEILGIKL 176 (178)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999877653
No 36
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=7.9e-30 Score=205.88 Aligned_cols=165 Identities=31% Similarity=0.474 Sum_probs=133.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchh-hhhhcccCccEEEE
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS-MRDLYIKNGQGFVV 181 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~-~~~~~~~~~d~vil 181 (286)
.+||+++|++|+|||||+++|.+..+...+ .+++.+.....+..++..+.+.+|||||++++.. ++..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 479999999999999999999976554433 2333566777788999999999999999998876 77888999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh-hcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 99999999999999999999886655689999999999997 55667888899999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy10504 262 IVREMNFN 269 (286)
Q Consensus 262 i~~~i~~~ 269 (286)
+.+.+...
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988653
No 37
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=1.4e-29 Score=208.87 Aligned_cols=166 Identities=30% Similarity=0.540 Sum_probs=145.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
....+||+++|++|+|||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 34679999999999999999999999988777666665 44456677788888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 176 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLE-DERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccc-cccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 99999999999999999998887743 4589999999999997 445667778888999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy10504 260 AEIVREMNF 268 (286)
Q Consensus 260 ~~i~~~i~~ 268 (286)
++|.+.+.+
T Consensus 177 ~~l~~~i~~ 185 (189)
T 2gf9_A 177 ERLVDVICE 185 (189)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998865
No 38
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=205.02 Aligned_cols=168 Identities=35% Similarity=0.614 Sum_probs=137.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
..+.+||+++|++|+|||||+++|.++.+. ..+.++++ ++....+..++..+.+.+|||||++++..++..+++.+|+
T Consensus 7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 357899999999999999999999998874 34555554 4444556788888889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|+|++++.+++.+..|+..+..... .++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSA-HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTT-SCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999988877543 589999999999998 45566777888888889999999999999999999
Q ss_pred HHHHHHHhhcCC
Q psy10504 259 FAEIVREMNFNP 270 (286)
Q Consensus 259 ~~~i~~~i~~~~ 270 (286)
|++|.+.+.+..
T Consensus 165 ~~~l~~~~~~~~ 176 (180)
T 2g6b_A 165 FTAIAKELKRRS 176 (180)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHHHh
Confidence 999999987644
No 39
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6.8e-30 Score=215.50 Aligned_cols=167 Identities=32% Similarity=0.539 Sum_probs=139.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQ 177 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d 177 (286)
....+||+++|++|||||||+++|.+. .+...++++..++....+.+++..+.+.+|||+|++. +..++..+++.++
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 345799999999999999999999963 3455555555577777888999998899999999887 5667788899999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++++|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...++++++|||++|.|+++
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~-~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHh-cCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999998877654334589999999999997 4456677777788888899999999999999999
Q ss_pred HHHHHHHHhhc
Q psy10504 258 MFAEIVREMNF 268 (286)
Q Consensus 258 l~~~i~~~i~~ 268 (286)
+|++|++.+..
T Consensus 193 lf~~l~~~i~~ 203 (211)
T 2g3y_A 193 LFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998854
No 40
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=1e-29 Score=205.28 Aligned_cols=164 Identities=29% Similarity=0.547 Sum_probs=137.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++++
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 679999999999999999999999888777767665 4445677788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 162 (170)
T 1z08_A 85 VYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLE-KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 999999999999999988877643 2478999999999997 44566777888899999999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+.+
T Consensus 163 l~~~~~~ 169 (170)
T 1z08_A 163 LCKRMIE 169 (170)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998764
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=8.7e-30 Score=207.16 Aligned_cols=167 Identities=34% Similarity=0.545 Sum_probs=145.9
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
.+++.+||+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 356789999999999999999999999888777777665 5667778889988889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.....+.+.++...+++++++||++|.|++++
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLS-DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCccc-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999998887654 3579999999999997 44556777888888889999999999999999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|++|.+.+.+
T Consensus 168 ~~~l~~~~~~ 177 (179)
T 2y8e_A 168 FRRVAAALPG 177 (179)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHhh
Confidence 9999987754
No 42
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=1e-29 Score=204.70 Aligned_cols=163 Identities=31% Similarity=0.523 Sum_probs=145.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
+.+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 579999999999999999999999988777777765 5667778888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++++.+++.+..|+..+.... ++.|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLL-DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGG-GGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccC-cccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 999999999999999998887754 589999999999997 44556677888889999999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9998754
No 43
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=4e-30 Score=210.66 Aligned_cols=165 Identities=32% Similarity=0.568 Sum_probs=117.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 86 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML 86 (183)
T ss_dssp EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence 579999999999999999999999888776666665 4555677888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 87 VYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVN-DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CC-SCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCC-ccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999888774 34589999999999997 44566778888899999999999999999999999999
Q ss_pred HHHHhhcC
Q psy10504 262 IVREMNFN 269 (286)
Q Consensus 262 i~~~i~~~ 269 (286)
|.+.+.+.
T Consensus 165 l~~~i~~~ 172 (183)
T 2fu5_C 165 LARDIKAK 172 (183)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988653
No 44
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=1.9e-29 Score=203.46 Aligned_cols=165 Identities=35% Similarity=0.558 Sum_probs=145.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||++++.++.+...+.++.+ +.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 3679999999999999999999999988777777765 344566778888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 161 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLT-DVREVMERDAKDYADSIHAIFVETSAKNAININELFI 161 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 999999999999999998888774 45689999999999997 4455677788888889999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|.+.+.+
T Consensus 162 ~i~~~i~~ 169 (170)
T 1z0j_A 162 EISRRIPS 169 (170)
T ss_dssp HHHHHCCC
T ss_pred HHHHHHhc
Confidence 99998753
No 45
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=205.37 Aligned_cols=166 Identities=33% Similarity=0.506 Sum_probs=144.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 3679999999999999999999999888766666655 555677888998888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+... .+++|+++|+||+|+. ..+.....+...++...+++++++||++|.|++++|+
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDP-ERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFN 163 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCc-hhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999988774 3489999999999987 4556677888889999999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10504 261 EIVREMNFNP 270 (286)
Q Consensus 261 ~i~~~i~~~~ 270 (286)
+|.+.+.+..
T Consensus 164 ~l~~~~~~~~ 173 (181)
T 3tw8_B 164 CITELVLRAK 173 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999886543
No 46
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=6e-30 Score=212.41 Aligned_cols=167 Identities=39% Similarity=0.692 Sum_probs=149.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
+.+.+||+++|++|+|||||+++|.++.+...+.++++......+.+++..+.+.+|||||+++ ..++..+++.+|+++
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 3467999999999999999999999999988888888877777788899888999999999988 778889999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC-cHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT-NVNEMF 259 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~-gv~~l~ 259 (286)
+|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...+++..+++++++||++|. |++++|
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~ 182 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD-HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc-cccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence 999999999999999999988886666789999999999997 445677788888998899999999999999 999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
++|++.+.+.
T Consensus 183 ~~l~~~i~~~ 192 (196)
T 2atv_A 183 YELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 47
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=9.9e-30 Score=205.31 Aligned_cols=165 Identities=44% Similarity=0.794 Sum_probs=144.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.+||+++|++|+|||||++++.++.+...+.++.+.........++..+.+.+|||||++++..++..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 46899999999999999999999998887777887766667777888888899999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
+|++++.+++.+..|+..+.... ..+++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES-PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE 160 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc-cccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence 99999999999999988887654 23579999999999997 44556677788888888999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+..
T Consensus 161 l~~~~~~ 167 (172)
T 2erx_A 161 LLNLEKR 167 (172)
T ss_dssp HHHTCCS
T ss_pred HHHHHhh
Confidence 9997754
No 48
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=5.1e-29 Score=202.59 Aligned_cols=167 Identities=34% Similarity=0.563 Sum_probs=142.5
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.++|+++|++|+|||||++++.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 34679999999999999999999999888777777665 45567778889888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNV 255 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv 255 (286)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+. .+.....+...+++ ..+++++++||++|.|+
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS--SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 999999999999999999988876543 2578999999999997 45566777777777 56789999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy10504 256 NEMFAEIVREMNFN 269 (286)
Q Consensus 256 ~~l~~~i~~~i~~~ 269 (286)
+++|++|++.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 49
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=2e-29 Score=205.51 Aligned_cols=162 Identities=23% Similarity=0.435 Sum_probs=139.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
++.+||+++|++|||||||+++|.++.+.. +.+|+++.....+.+++..+.+.+|||||+++ ..+++++|++++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 467999999999999999999999998876 77788877788888999988999999999986 457888999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCC-CCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLAS-HQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNE 257 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~ 257 (286)
|||++++.+++.+..|+..+..... .+++|+++|+||+|+.. ..+.+...+.+.++... +++++++||++|.|+++
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 158 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHH
Confidence 9999999999999998777765543 35899999999999952 34567778888888776 68999999999999999
Q ss_pred HHHHHHHHhhcC
Q psy10504 258 MFAEIVREMNFN 269 (286)
Q Consensus 258 l~~~i~~~i~~~ 269 (286)
+|++|.+.+.+.
T Consensus 159 lf~~l~~~~~~~ 170 (178)
T 2iwr_A 159 VFQEVAQKVVTL 170 (178)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.7e-29 Score=203.76 Aligned_cols=164 Identities=37% Similarity=0.620 Sum_probs=139.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||++++.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999999888776666655 4556677788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. .+.....+.+.+++..+++++++||++|.|++++|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 158 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFT 158 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCT--TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCC--cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999999998887753 3589999999999994 4456677888888899999999999999999999999
Q ss_pred HHHHhhcC
Q psy10504 262 IVREMNFN 269 (286)
Q Consensus 262 i~~~i~~~ 269 (286)
|.+.+.+.
T Consensus 159 l~~~~~~~ 166 (170)
T 1g16_A 159 LAKLIQEK 166 (170)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99998764
No 51
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=1.4e-29 Score=207.68 Aligned_cols=166 Identities=33% Similarity=0.462 Sum_probs=146.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|||||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 4679999999999999999999999988777777665 555677788888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLD-ADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 9999999999999999998887653 3589999999999996 4456677788888999999999999999999999999
Q ss_pred HHHHHhhcC
Q psy10504 261 EIVREMNFN 269 (286)
Q Consensus 261 ~i~~~i~~~ 269 (286)
++.+.+.+.
T Consensus 166 ~l~~~~~~~ 174 (186)
T 2bme_A 166 QCARKILNK 174 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988654
No 52
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=4.3e-29 Score=208.74 Aligned_cols=165 Identities=34% Similarity=0.551 Sum_probs=146.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 3679999999999999999999999988877777665 455567788888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...++...+++++++||++|.|++++|+
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLK-DKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCT-TTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887753 4589999999999997 4456677788888889999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|.+.+.+
T Consensus 164 ~l~~~i~~ 171 (206)
T 2bcg_Y 164 TMARQIKE 171 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99997653
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=208.05 Aligned_cols=168 Identities=33% Similarity=0.522 Sum_probs=148.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 35679999999999999999999999988877777765 45556778888888999999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++.+++.+..|+..+.......++|+++|+||+|+. .+.+...+...+++..+++++++||+++.|++++|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE--NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS--SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc--ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 9999999999999999998888775444689999999999995 34566777888888999999999999999999999
Q ss_pred HHHHHHhhcCC
Q psy10504 260 AEIVREMNFNP 270 (286)
Q Consensus 260 ~~i~~~i~~~~ 270 (286)
++|.+.+.+.+
T Consensus 170 ~~l~~~~~~~~ 180 (195)
T 1x3s_A 170 EELVEKIIQTP 180 (195)
T ss_dssp HHHHHHHHTSG
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 54
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=209.90 Aligned_cols=168 Identities=34% Similarity=0.540 Sum_probs=144.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+. .....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 46799999999999999999999999887777777653 34455677778888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+.+.+++..+++++++||++|.|++++|+
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLS-DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 9999999999999999999887753 4589999999999997 4456677888899999999999999999999999999
Q ss_pred HHHHHhhcCCC
Q psy10504 261 EIVREMNFNPE 271 (286)
Q Consensus 261 ~i~~~i~~~~~ 271 (286)
+|.+.+.+.+.
T Consensus 179 ~l~~~i~~~~~ 189 (192)
T 2fg5_A 179 GISRQIPPLDP 189 (192)
T ss_dssp HHHHTCC----
T ss_pred HHHHHHHhhCC
Confidence 99998876543
No 55
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=213.55 Aligned_cols=169 Identities=30% Similarity=0.542 Sum_probs=127.4
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+|+.+.....+.+++..+.+.+|||||+++|..++..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 45679999999999999999999999988888888888777778888999889999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504 181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA 247 (286)
Q Consensus 181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v 247 (286)
+|||++++.+++.+. .|+..+... .+++|+++|+||+|+.+.. +.+...+...+++..+. ++++|
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999987 688877764 3589999999999997432 35677788888888897 99999
Q ss_pred eCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504 248 SAKNKTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~i~~~~~ 271 (286)
||++|.|++++|++|++.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999876543
No 56
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=4.3e-29 Score=205.62 Aligned_cols=168 Identities=28% Similarity=0.463 Sum_probs=145.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE--EEEEEECCe---------EEEEEEEeCCCcccchhhh
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY--RKEIEVDKA---------PCVLEILDTAGTEQFASMR 169 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~---------~~~l~l~DtpG~~~~~~~~ 169 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+|.+... ...+..++. .+.+.+|||||++++..++
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 34679999999999999999999999888777777765333 345556655 6779999999999999999
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
..+++.+|++++|+|++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+.+.++...+++++++||
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE-DQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc-cccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999988876554689999999999997 44556777888888889999999999
Q ss_pred CCCCcHHHHHHHHHHHhhcC
Q psy10504 250 KNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~~ 269 (286)
++|.|++++|++|.+.+.+.
T Consensus 167 ~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988653
No 57
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.97 E-value=1.5e-29 Score=207.95 Aligned_cols=165 Identities=27% Similarity=0.448 Sum_probs=145.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
...+||+++|++|+|||||+++|.++.+...+.+|.+......+.+++..+.+.+|||||+++|..++..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 46799999999999999999999999988888888877777777888888889999999999999999999999999999
Q ss_pred EEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504 182 VYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEAS 248 (286)
Q Consensus 182 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~vS 248 (286)
|||++++.+++.+ ..|+..+... .+++|+++|+||+|+.++ .+.+..++.+.+++.++ .++++||
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 162 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS 162 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence 9999999999998 6788877764 358999999999999732 25577788888998887 7899999
Q ss_pred CC-CCCcHHHHHHHHHHHhhc
Q psy10504 249 AK-NKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 249 a~-~~~gv~~l~~~i~~~i~~ 268 (286)
|+ ++.|++++|+++++.+.+
T Consensus 163 a~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 163 ALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTTBHHHHHHHHHHHHHHHHT
T ss_pred ecCCCcCHHHHHHHHHHHHhc
Confidence 99 689999999999998754
No 58
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2e-29 Score=208.55 Aligned_cols=167 Identities=31% Similarity=0.501 Sum_probs=145.9
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988777777654 44556677888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++|+|++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 179 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLS-QAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998888764 33589999999999997 445567778888888899999999999999999999
Q ss_pred HHHHHHhhcC
Q psy10504 260 AEIVREMNFN 269 (286)
Q Consensus 260 ~~i~~~i~~~ 269 (286)
++|.+.+.+.
T Consensus 180 ~~l~~~i~~~ 189 (193)
T 2oil_A 180 ETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988653
No 59
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=2.2e-29 Score=205.30 Aligned_cols=168 Identities=32% Similarity=0.532 Sum_probs=131.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.+.++|+++|++|+|||||++++.++.+...+.++.+ ++....+.++ +..+.+.+|||||++.+..++..+++.+|++
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 4679999999999999999999999888777777664 5556666666 5567799999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhC---CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKG---SERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNV 255 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv 255 (286)
++|+|++++.+++.+..|+..+..... ..++|+++|+||+|+.+..+.+...+.+.+++ ..+.+++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 165 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINV 165 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCH
Confidence 999999999999999999988876542 25889999999999975555667777888887 56689999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy10504 256 NEMFAEIVREMNFN 269 (286)
Q Consensus 256 ~~l~~~i~~~i~~~ 269 (286)
+++|++|.+.+.+.
T Consensus 166 ~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 166 DTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988653
No 60
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=209.19 Aligned_cols=166 Identities=36% Similarity=0.607 Sum_probs=138.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
....+||+++|++|+|||||+++|.++.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 45679999999999999999999999888777666665 55567778888888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-CCCEEEEeCCCCCcHHHH
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~vSa~~~~gv~~l 258 (286)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.+++.. +.+++++||++|.|++++
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCE-TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccc-cccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999998887764 34589999999999997 44566777788888875 789999999999999999
Q ss_pred HHHHHHHhhc
Q psy10504 259 FAEIVREMNF 268 (286)
Q Consensus 259 ~~~i~~~i~~ 268 (286)
|++|.+.+.+
T Consensus 181 ~~~l~~~i~~ 190 (192)
T 2il1_A 181 FLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 61
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=210.70 Aligned_cols=168 Identities=33% Similarity=0.569 Sum_probs=137.3
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
...+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 103 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADG 103 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSE
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCE
Confidence 345679999999999999999999999888776666655 4556777888988889999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC-----CCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS-----HQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
+++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+ ..+.+...+.+.+++..+++++++||++|.
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999998888764 335789999999999962 345667778888898999999999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++|++|++.+.+
T Consensus 183 gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 183 NIVEAVLHLAREVKK 197 (199)
T ss_dssp THHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998864
No 62
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=211.30 Aligned_cols=167 Identities=32% Similarity=0.453 Sum_probs=138.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888777766655 555677788888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+.... .+++|+++|+||+|+. ..+.+...+...+++..++++++|||++|.|++++|+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887753 3589999999999997 4455677788888999999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10504 261 EIVREMNFNP 270 (286)
Q Consensus 261 ~i~~~i~~~~ 270 (286)
+|++.+.+..
T Consensus 181 ~l~~~i~~~~ 190 (200)
T 2o52_A 181 KCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=7.5e-29 Score=206.64 Aligned_cols=164 Identities=30% Similarity=0.541 Sum_probs=145.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..+||+++|++|+|||||+++|.++.+...+.++.+ ++....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 579999999999999999999999988777777665 4445667788888889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+.+.+++.++++++++||++|.|++++|++
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 164 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDME-DERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFER 164 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCT-TSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccC-cccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHH
Confidence 999999999999999998887743 4589999999999997 45566778888899999999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+.+
T Consensus 165 l~~~i~~ 171 (203)
T 1zbd_A 165 LVDVICE 171 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 64
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-29 Score=212.41 Aligned_cols=170 Identities=29% Similarity=0.484 Sum_probs=140.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++.+ ++....+.+++..+.+.+|||||+++|..++..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 4679999999999999999999999988777666655 455667888888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+. ..+.+...+...+++..+++++++||++|.|++++|+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 168 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLA-HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFE 168 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGG-GGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887753 4578999999999997 4456677788888888999999999999999999999
Q ss_pred HHHHHhhcCCCCc
Q psy10504 261 EIVREMNFNPEKD 273 (286)
Q Consensus 261 ~i~~~i~~~~~~~ 273 (286)
+|++.+.+.....
T Consensus 169 ~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 169 ELINTIYQKVSKH 181 (223)
T ss_dssp HHHHHHTTCC---
T ss_pred HHHHHHHHHhhhc
Confidence 9999987654443
No 65
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.1e-30 Score=213.27 Aligned_cols=167 Identities=29% Similarity=0.529 Sum_probs=147.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...+||+++|++|+|||||+++|.++.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 4679999999999999999999999888777666654 555667777888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+... ..+++|+++|+||+|+. ..+.....+.+.+++..+++++++||++|.|++++|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDME-EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999988774 34589999999999997 5566778888999999999999999999999999999
Q ss_pred HHHHHhhcCC
Q psy10504 261 EIVREMNFNP 270 (286)
Q Consensus 261 ~i~~~i~~~~ 270 (286)
+|++.+.+..
T Consensus 179 ~l~~~i~~~~ 188 (191)
T 3dz8_A 179 RLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999886543
No 66
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.97 E-value=2.5e-29 Score=210.94 Aligned_cols=166 Identities=27% Similarity=0.445 Sum_probs=144.8
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
....+||+++|++|+|||||+++|.++.+...+.+|++......+.+++..+.+.+|||||+++|..++..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 34679999999999999999999999999888888887766677778888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcC-CCEEEE
Q psy10504 181 VVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWG-CPFIEA 247 (286)
Q Consensus 181 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~-~~~~~v 247 (286)
+|||++++.+++++ ..|+..+... .+++|+++|+||+|+.++ .+.+..++.+.+++..+ .++++|
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 182 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 182 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 99999999999998 6788888764 358999999999999732 25577788888998887 799999
Q ss_pred eCC-CCCcHHHHHHHHHHHhhc
Q psy10504 248 SAK-NKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 248 Sa~-~~~gv~~l~~~i~~~i~~ 268 (286)
||+ ++.|++++|++|++.+.+
T Consensus 183 SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 183 SALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeccCCcCHHHHHHHHHHHHhh
Confidence 999 689999999999988753
No 67
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=1.3e-28 Score=205.44 Aligned_cols=167 Identities=29% Similarity=0.476 Sum_probs=145.2
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
.....+||+++|++|+|||||++++.++.+...+.++++......+.+++..+.+.+|||||++++..++..+++.+|++
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 34577999999999999999999999999888888888776667788889888899999999999999999999999999
Q ss_pred EEEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEE
Q psy10504 180 VVVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIE 246 (286)
Q Consensus 180 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~ 246 (286)
++|||++++.+++.+ ..|...+... .+++|+++|+||+|+.+.. +.+...+...+++..+. ++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence 999999999999998 5677777664 2489999999999997431 45677788888888887 8999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhc
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+||++|.|++++|++|.+.+.+
T Consensus 179 ~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 179 CSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHC
T ss_pred eeCCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999987653
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.1e-28 Score=206.80 Aligned_cols=168 Identities=33% Similarity=0.497 Sum_probs=140.8
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+..+||+++|++|+|||||+++|.++.+...+.+++++.....+..++..+.+.+|||||++++..++..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34679999999999999999999999988888888888777777888998888999999999999999999999999999
Q ss_pred EEEECCCcccHHHH-HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504 181 VVYSLTNHHTFQDI-KQMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA 247 (286)
Q Consensus 181 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v 247 (286)
+|||++++.+++.+ ..|+..+... .+++|+++|+||+|+.+.. +.+...+...++...+. +++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 99999999999998 5677777663 3589999999999997331 44667778888888887 89999
Q ss_pred eCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 248 SAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
||++|.|++++|++|.+.+.+..
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~ 202 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKR 202 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654
No 69
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.96 E-value=2.2e-29 Score=212.14 Aligned_cols=167 Identities=28% Similarity=0.487 Sum_probs=142.1
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCe----------EEEEEEEeCCCcccchhhh
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKA----------PCVLEILDTAGTEQFASMR 169 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~----------~~~l~l~DtpG~~~~~~~~ 169 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+|.+ ++....+.+++. .+.+.+|||||+++|..++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 34679999999999999999999999888766666654 333455566655 6779999999999999999
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
..+++.+|++++|||++++.+++.+..|+..+.......++|+++|+||+|+. ..+.+...+.+.+++..++++++|||
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~~Sa 180 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP-DQREVNERQARELADKYGIPYFETSA 180 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCCEEEEBT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc-cccccCHHHHHHHHHHCCCcEEEEEC
Confidence 99999999999999999999999999888877654333689999999999997 44566778888899999999999999
Q ss_pred CCCCcHHHHHHHHHHHhhc
Q psy10504 250 KNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~ 268 (286)
++|.|++++|++|.+.+.+
T Consensus 181 ~~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 181 ATGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTTBTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 70
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=2.9e-29 Score=208.24 Aligned_cols=167 Identities=32% Similarity=0.547 Sum_probs=137.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-chhhhhhcccCccE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-FASMRDLYIKNGQG 178 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-~~~~~~~~~~~~d~ 178 (286)
...+||+++|++|||||||+++|.+ ..+...+.++..++....+.+++..+.+.+|||+|++. +..++..+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 3569999999999999999999996 34455555555577777888999998899999999876 56677888999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|||++++.+++.+..|+..+......+++|+++|+||+|+. ..+.+...+...++...++++++|||++|.|++++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~-~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l 162 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhh-ccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence 99999999999999999998888775545689999999999997 34556677777888888899999999999999999
Q ss_pred HHHHHHHhhcC
Q psy10504 259 FAEIVREMNFN 269 (286)
Q Consensus 259 ~~~i~~~i~~~ 269 (286)
|+++++.+...
T Consensus 163 f~~l~~~~~~~ 173 (192)
T 2cjw_A 163 FEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988543
No 71
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=3.9e-29 Score=207.25 Aligned_cols=173 Identities=18% Similarity=0.264 Sum_probs=129.2
Q ss_pred CCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC
Q psy10504 97 DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN 175 (286)
Q Consensus 97 ~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~ 175 (286)
+..++...+||+++|++|||||||+++|.++.+.. .+.+|++ .....+...+ +.+.+|||||++++..++..+++.
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 86 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG-YNVETFEKGR--VAFTVFDMGGAKKFRGLWETYYDN 86 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS-EEEEEEEETT--EEEEEEEECCSGGGGGGGGGGCTT
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccc-eeEEEEEeCC--EEEEEEECCCCHhHHHHHHHHHhc
Confidence 34556688999999999999999999999998887 7777776 3334444444 459999999999999999999999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-------CCCcEEEEEeCCCCCCCCCCCCHHHHH---HHHHhcCCCEE
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-------ERVPILLVANKLDLASHQREVPTLDGQ---ALAQSWGCPFI 245 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~piivv~nK~Dl~~~~~~~~~~~~~---~~~~~~~~~~~ 245 (286)
+|++|+|||++++.+++.+..|+..+...... +++|+++|+||+|+.+........+.. .+.+..+++++
T Consensus 87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (199)
T 4bas_A 87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF 166 (199)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence 99999999999999999999988887653211 378999999999997432111111111 11134668899
Q ss_pred EEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 246 EASAKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 246 ~vSa~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
+|||++|.|++++|++|.+.+.+...+
T Consensus 167 ~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 167 ASNGLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred EeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998765443
No 72
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=5.2e-30 Score=209.39 Aligned_cols=165 Identities=30% Similarity=0.534 Sum_probs=127.2
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|+|||||++++.++.+...+.+|+++.....+..++..+.+.+|||||++++..++..+++.+|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 35699999999999999999999999888888888775555555567777778899999999999999999999999999
Q ss_pred EEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC---------CCCHHHHHHHHHhcCC-CEEEEeCC
Q psy10504 182 VYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR---------EVPTLDGQALAQSWGC-PFIEASAK 250 (286)
Q Consensus 182 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~-~~~~vSa~ 250 (286)
|+|++++.+++.+. .|+..+.... +++|+++|+||+|+.+... .+...+.+.+++..+. ++++|||+
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 163 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK 163 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence 99999999999997 6888777642 4899999999999863321 2467778888888886 99999999
Q ss_pred CCCcHHHHHHHHHHHhhc
Q psy10504 251 NKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~ 268 (286)
+|.|++++|++|.+.+..
T Consensus 164 ~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 164 SQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp TCTTHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999998753
No 73
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=5e-29 Score=208.56 Aligned_cols=164 Identities=29% Similarity=0.532 Sum_probs=142.4
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..+.+||+++|++|+|||||++++.++.+...+.+++.+.....+..++..+.+.+|||||+++|..++..+++.+|+++
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 45679999999999999999999999999988999998888888889999988999999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504 181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA 247 (286)
Q Consensus 181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v 247 (286)
+|||++++.+++++. .|+..+.... +++|+++|+||+|+.+.. +.+...+...+++..+. ++++|
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 184 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence 999999999999997 6887777653 589999999999997322 23667788888888885 59999
Q ss_pred eCCCCCcHHHHHHHHHHHh
Q psy10504 248 SAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~i 266 (286)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTTCTTHHHHHHHHHHTT
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998864
No 74
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=2e-28 Score=205.21 Aligned_cols=164 Identities=37% Similarity=0.608 Sum_probs=143.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...++|+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 4679999999999999999999999888766666655 556677888888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+.... ..++|+++|+||+|+. .+.....+.+.++...+++++++||++|.|++++|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 174 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDME--TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFF 174 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCS--SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCc--ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 9999999999999999998887753 3478999999999994 455667778888888999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|.+.+.+
T Consensus 175 ~l~~~~~~ 182 (213)
T 3cph_A 175 TLAKLIQE 182 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
No 75
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.96 E-value=3.1e-28 Score=201.81 Aligned_cols=161 Identities=30% Similarity=0.470 Sum_probs=139.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeE------------------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAP------------------------------ 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~------------------------------ 151 (286)
..+||+++|++|+|||||+++|+++.+...+.++++ ++....+.+++..
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 569999999999999999999999988877777775 4445556666544
Q ss_pred -------EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC
Q psy10504 152 -------CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224 (286)
Q Consensus 152 -------~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~ 224 (286)
+.+.+|||||++++..++..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+| . .
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~-~ 160 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-K-N 160 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-C-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-c-c
Confidence 779999999999999999999999999999999999999999999988887743 489999999999 3 4
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
.+.....+.+.+++..+++++++||++|.|++++|++|.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 161 KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp -CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 56677788889999999999999999999999999999998764
No 76
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2.7e-28 Score=203.59 Aligned_cols=165 Identities=33% Similarity=0.533 Sum_probs=142.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.++|+++|++|+|||||+++|.++.+...+.++++ ++....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 4679999999999999999999999988877777764 555667778888888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCC---CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-hcCCCEEEEeCCCCCcHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGS---ERVPILLVANKLDLASHQREVPTLDGQALAQ-SWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~vSa~~~~gv~ 256 (286)
+|+|++++.+++.+..|+..+...... .++|+++|+||+|+. .+.....+...++. ..+++++++||++|.|++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 163 (207)
T 1vg8_A 86 LVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE--NRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163 (207)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS--CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc--ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHH
Confidence 999999999999999998888765421 478999999999997 34456667777776 667899999999999999
Q ss_pred HHHHHHHHHhhc
Q psy10504 257 EMFAEIVREMNF 268 (286)
Q Consensus 257 ~l~~~i~~~i~~ 268 (286)
++|++|.+.+.+
T Consensus 164 ~l~~~l~~~~~~ 175 (207)
T 1vg8_A 164 QAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999998754
No 77
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=2.4e-29 Score=209.72 Aligned_cols=168 Identities=26% Similarity=0.340 Sum_probs=110.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEECCe--EEEEEEEeCCCcccchhhhhhcccCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEVDKA--PCVLEILDTAGTEQFASMRDLYIKNG 176 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~ 176 (286)
...++|+++|++|+|||||+++|.++ .+...+.+|++ ++....+.+++. .+.+.+|||||++++..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 78878888876 666777888876 77899999999999999999999999
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-CC
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN-KT 253 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~-~~ 253 (286)
|++++|||++++.+++.+..|+..+..... ..++|+++|+||+|+.+..+.+...+...+++..+++++++||++ |.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999887543 258999999999999732566777888999999999999999999 99
Q ss_pred cHHHHHHHHHHHhhcC
Q psy10504 254 NVNEMFAEIVREMNFN 269 (286)
Q Consensus 254 gv~~l~~~i~~~i~~~ 269 (286)
|++++|++|.+.+.+.
T Consensus 178 gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 178 DADAPFLSIATTFYRN 193 (208)
T ss_dssp --CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987643
No 78
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.96 E-value=3.9e-28 Score=204.64 Aligned_cols=171 Identities=23% Similarity=0.398 Sum_probs=141.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE-EEEEEC-CeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR-KEIEVD-KAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
....+||+++|++|||||||+++|+++.+...+.++.+.... ..+... +..+.+.+|||||++.+..++..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 346799999999999999999999998888777777653333 333333 334779999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
+++|+|++++.+++++..|+..+..... .++|+++|+||+|+. ..+.+.......++...+++++++||++|.|++++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVG-NEAPIVVCANKIDIK-NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHC-SSSCEEEEEECTTCC-----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCEEEEEECCCCc-cccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 9999999999999999999998887543 368999999999997 45567777788888888999999999999999999
Q ss_pred HHHHHHHhhcCCCCc
Q psy10504 259 FAEIVREMNFNPEKD 273 (286)
Q Consensus 259 ~~~i~~~i~~~~~~~ 273 (286)
|++|.+.+.+.+...
T Consensus 166 ~~~l~~~~~~~~~~~ 180 (218)
T 4djt_A 166 FLHLARIFTGRPDLI 180 (218)
T ss_dssp HHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhcccccc
Confidence 999999987765443
No 79
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.96 E-value=7.2e-28 Score=198.75 Aligned_cols=163 Identities=19% Similarity=0.285 Sum_probs=130.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQG 178 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~ 178 (286)
...+.+||+++|++|+|||||+++|.++. +...+.+|.+ .....+.+++. .+.+|||||++++..++..+++.+|+
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG-FSIEKFKSSSL--SFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS-EEEEEEECSSC--EEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc-eeEEEEEECCE--EEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 34567999999999999999999999987 5666666664 55566666664 48999999999999999999999999
Q ss_pred EEEEEECCCcccHHHHHHHHHHHHHHhCC--CCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCC
Q psy10504 179 FVVVYSLTNHHTFQDIKQMKELITRVKGS--ERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKN 251 (286)
Q Consensus 179 vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~ 251 (286)
+++|+|++++.+++.+..|+..+...... .++|+++|+||+|+.+ .....+...... ..++++++|||++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 170 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD---AVTSVKVSQLLCLENIKDKPWHICASDAIK 170 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT---CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc---CCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999998888775433 5899999999999973 223344444332 2356899999999
Q ss_pred CCcHHHHHHHHHHHhhc
Q psy10504 252 KTNVNEMFAEIVREMNF 268 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~ 268 (286)
|.|++++|++|.+.+.+
T Consensus 171 ~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 171 GEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TBTHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999998765
No 80
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=2.1e-28 Score=201.46 Aligned_cols=164 Identities=18% Similarity=0.241 Sum_probs=125.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.++|+++|++|||||||++++.++.+. .+.+|.+ .....+.+++. .+.+|||||++++..++..+++.+|++++|
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 90 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG-SNVEEIVINNT--RFLMWDIGGQESLRSSWNTYYTNTEFVIVV 90 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC-SSCEEEEETTE--EEEEEECCC----CGGGHHHHTTCCEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 5699999999999999999999988776 5555654 33445566664 489999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~~ 257 (286)
+|++++.+++.+..|+..+.......++|+++|+||+|+.+. ....+...... ..+++++++||++|.|+++
T Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 167 (187)
T 1zj6_A 91 VDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ 167 (187)
T ss_dssp EETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC---CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC---CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence 999999999999999888876433458999999999999732 22333333221 2346899999999999999
Q ss_pred HHHHHHHHhhcCCCCc
Q psy10504 258 MFAEIVREMNFNPEKD 273 (286)
Q Consensus 258 l~~~i~~~i~~~~~~~ 273 (286)
+|++|++.+...+...
T Consensus 168 l~~~l~~~~~~~~~~~ 183 (187)
T 1zj6_A 168 GLEWMMSRLKIRLEHH 183 (187)
T ss_dssp HHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999987765544
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.96 E-value=1.1e-28 Score=198.25 Aligned_cols=157 Identities=16% Similarity=0.265 Sum_probs=123.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEE
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYS 184 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d 184 (286)
+||+++|++|+|||||++++.++.+.. +.+|.+ .....+..++ +.+.+|||||++++..++..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 76 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKN--ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 76 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSS-CCEEEEECSS--CEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCc-eeEEEEEECC--EEEEEEEcCCChhhHHHHHHHhccCCEEEEEEE
Confidence 589999999999999999999887764 455554 3344455544 448999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH----HhcCCCEEEEeCCCCCcHHHHH
Q psy10504 185 LTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LA----QSWGCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 185 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~vSa~~~~gv~~l~ 259 (286)
++++.+++.+..|+..+......+++|+++|+||+|+.+.. ...+... +. ...++++++|||++|.|++++|
T Consensus 77 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (164)
T 1r8s_A 77 SNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153 (164)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC---CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHH
Confidence 99999999999988887764444689999999999997321 1122111 11 1123579999999999999999
Q ss_pred HHHHHHhhc
Q psy10504 260 AEIVREMNF 268 (286)
Q Consensus 260 ~~i~~~i~~ 268 (286)
++|.+.+.+
T Consensus 154 ~~l~~~i~~ 162 (164)
T 1r8s_A 154 DWLSNQLRN 162 (164)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHhh
Confidence 999998764
No 82
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.96 E-value=1.6e-27 Score=195.67 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=130.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.++|+++|++|+|||||++++.++. ...+.+|.+ .....+.+++. .+++|||||++++..++..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~-~~~~~~~~~~~--~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG-FNIKTLEHRGF--KLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS-EEEEEEEETTE--EEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999999887 666666665 44455666654 48999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~gv~ 256 (286)
|+|++++.+++++..|+..+......+++|+++|+||+|+.+. . ...+...... ..+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (186)
T 1ksh_A 92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGA-L--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168 (186)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-C--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC-C--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHH
Confidence 9999999999999999888776544468999999999999732 1 2222222211 234689999999999999
Q ss_pred HHHHHHHHHhhcC
Q psy10504 257 EMFAEIVREMNFN 269 (286)
Q Consensus 257 ~l~~~i~~~i~~~ 269 (286)
++|++|.+.+.+.
T Consensus 169 ~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 169 PGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 83
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.96 E-value=5.7e-28 Score=201.32 Aligned_cols=158 Identities=18% Similarity=0.227 Sum_probs=122.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+.+++ +.+.+|||||+++++.++..+++.+|++++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 45689999999999999999999988764 345555433 45666777 459999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----------------cCCCE
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----------------WGCPF 244 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 244 (286)
|+|++++.+++++..|+..+.......++|+++|+||+|+.+ ....++....... .++++
T Consensus 99 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (198)
T 1f6b_A 99 LVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE---AISEERLREMFGLYGQTTGKGSVSLKELNARPLEV 175 (198)
T ss_dssp EEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT---CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc---cCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence 999999999999999988887644445899999999999973 3455555555442 23579
Q ss_pred EEEeCCCCCcHHHHHHHHHHHh
Q psy10504 245 IEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i 266 (286)
++|||++|.|++++|++|.+.+
T Consensus 176 ~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 176 FMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 9999999999999999998754
No 84
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=1.2e-29 Score=211.19 Aligned_cols=165 Identities=39% Similarity=0.618 Sum_probs=135.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
.+.+||+++|++|+|||||+++|.++.+...+.++++ +.....+.+++..+.+.+|||||++++..++..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 4679999999999999999999999888776655554 566677888998888999999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|||++++.+++.+..|+..+... ...++|+++|+||+|+. ..+.+...+.+.++...+++++++||++|.|++++|+
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~ 188 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLT-TKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 188 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC---CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCC-ccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 999999999999999999888663 33479999999999997 4455555567788889999999999999999999999
Q ss_pred HHHHHhhc
Q psy10504 261 EIVREMNF 268 (286)
Q Consensus 261 ~i~~~i~~ 268 (286)
+|.+.+.+
T Consensus 189 ~l~~~l~~ 196 (199)
T 3l0i_B 189 TMAAEIKK 196 (199)
T ss_dssp HHTTTTTT
T ss_pred HHHHHHHH
Confidence 99988765
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=1.7e-27 Score=192.32 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=127.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
+.++|+++|++|+|||||++++.++.+.. +.+|.+ .....+.+++.. +.+|||||++++..++..+++.+|++++|
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v 81 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIG-FNVETVTYKNLK--FQVWDLGGLTSIRPYWRCYYSNTDAVIYV 81 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSS-EEEEEEEETTEE--EEEEEECCCGGGGGGGGGGCTTCSEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCc-cceEEEEECCEE--EEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 56999999999999999999999887754 445543 445556666544 89999999999999999999999999999
Q ss_pred EECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-H----HHhcCCCEEEEeCCCCCcHHH
Q psy10504 183 YSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-L----AQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 183 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~vSa~~~~gv~~ 257 (286)
+|++++.+++....|+..+.......++|+++|+||+|+.+.. ...+... + ....+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 158 (171)
T 1upt_A 82 VDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM---TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 158 (171)
T ss_dssp EETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC---CHHHHHHHhCchhccCCceEEEECcCCCCcCHHH
Confidence 9999999999999888877664334589999999999997322 1122211 1 122346799999999999999
Q ss_pred HHHHHHHHhhcC
Q psy10504 258 MFAEIVREMNFN 269 (286)
Q Consensus 258 l~~~i~~~i~~~ 269 (286)
+|++|.+.+.+.
T Consensus 159 l~~~l~~~i~~~ 170 (171)
T 1upt_A 159 AMEWLVETLKSR 170 (171)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhhc
Confidence 999999998754
No 86
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.7e-27 Score=197.13 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=127.0
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..+.+||+++|++|||||||++++.++.+. .+.+|.+. ....+.+++ +.+.+|||||++++..++..+++.+|+++
T Consensus 20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP-TSEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC-EEEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC-CeEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 346689999999999999999999998764 34455544 356677777 45899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh------------cCCCEEEEe
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS------------WGCPFIEAS 248 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~------------~~~~~~~vS 248 (286)
+|+|++++.+++.+..|+..+.......++|+++|+||+|+.+ ....++....... .++++++||
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN---AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT---CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC---CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 9999999999999999988887644446899999999999973 3444444444322 346799999
Q ss_pred CCCCCcHHHHHHHHHHH
Q psy10504 249 AKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~ 265 (286)
|++|.|++++|++|.+.
T Consensus 173 a~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTTTBSHHHHHHHHHTT
T ss_pred CCcCCCHHHHHHHHHhh
Confidence 99999999999999864
No 87
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.95 E-value=1.5e-27 Score=196.70 Aligned_cols=164 Identities=18% Similarity=0.233 Sum_probs=129.1
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|+|||||+++|.++.+...+.+|++... ..+...+ +.+.+|||||++++..++..+++.+|++
T Consensus 18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM-RKITKGN--VTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEETT--EEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeE-EEEEeCC--EEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 345689999999999999999999999888877777766433 2344444 4589999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN 254 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g 254 (286)
++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.. ...+...... ..++++++|||++|.|
T Consensus 95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 171 (188)
T 1zd9_A 95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL---DEKELIEKMNLSAIQDREICCYSISCKEKDN 171 (188)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC---CHHHHHHHhChhhhccCCeeEEEEECCCCCC
Confidence 9999999999999999988887764334589999999999997321 1222211111 1235789999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy10504 255 VNEMFAEIVREMNFN 269 (286)
Q Consensus 255 v~~l~~~i~~~i~~~ 269 (286)
++++|++|.+.+.+.
T Consensus 172 v~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 172 IDITLQWLIQHSKSR 186 (188)
T ss_dssp HHHHHHHHHHTCC--
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 88
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=3.9e-28 Score=205.32 Aligned_cols=168 Identities=26% Similarity=0.476 Sum_probs=143.9
Q ss_pred CCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 99 ~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
..+.+.+||+++|++|||||||+++++.+.+...+.++.+ +.....+..++..+.+.+|||||++.+..++..+++.+|
T Consensus 10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 89 (221)
T 3gj0_A 10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ 89 (221)
T ss_dssp TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence 3455789999999999999999999888777777666664 555666778888889999999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
++++|||++++.+++.+..|+..+.... +++|+++|+||+|+.+.. .. .+...+++..++++++|||++|.|+++
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 90 CAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRK--VK-AKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCS--SC-GGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCcccccc--cc-HHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999988753 489999999999997322 22 245566777889999999999999999
Q ss_pred HHHHHHHHhhcCCC
Q psy10504 258 MFAEIVREMNFNPE 271 (286)
Q Consensus 258 l~~~i~~~i~~~~~ 271 (286)
+|++|.+.+...+.
T Consensus 165 l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 165 PFLWLARKLIGDPN 178 (221)
T ss_dssp HHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999877654
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.95 E-value=7e-28 Score=197.43 Aligned_cols=161 Identities=17% Similarity=0.211 Sum_probs=124.2
Q ss_pred CCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 98 ~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
.....+.+||+++|++|+|||||+++|.++.+ ..+.+|.+.. ...+.+++. .+.+|||||++++..++..+++.+|
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~-~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSN-VEEIVINNT--RFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSS-CEEEEETTE--EEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCcee-eEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCC
Confidence 34455789999999999999999999999877 4455555422 345556664 4899999999999999999999999
Q ss_pred EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCC
Q psy10504 178 GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNK 252 (286)
Q Consensus 178 ~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~ 252 (286)
++++|+|++++.+++.+..|+..+.......++|+++|+||+|+.+. ....+..... ...++++++|||++|
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC---MTVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC---CCHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC---CCHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 99999999999999999998888776433458999999999999732 2223322222 123457999999999
Q ss_pred CcHHHHHHHHHHH
Q psy10504 253 TNVNEMFAEIVRE 265 (286)
Q Consensus 253 ~gv~~l~~~i~~~ 265 (286)
.|++++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999864
No 90
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.95 E-value=3.2e-28 Score=201.79 Aligned_cols=162 Identities=17% Similarity=0.292 Sum_probs=122.9
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|++|||||||++++.++.+.. +.+|.+ .....+..++. .+.+|||||++++..++..+++.+|++
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~i 100 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG-FNVETVEYKNI--CFTVWDVGGQDKIRPLWRHYFQNTQGL 100 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT-EEEEEEEETTE--EEEEEECC-----CTTHHHHHHTCCEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc-eeEEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 34577999999999999999999999887764 344544 44455556554 489999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH-H----HhcCCCEEEEeCCCCCc
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL-A----QSWGCPFIEASAKNKTN 254 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~-~----~~~~~~~~~vSa~~~~g 254 (286)
++|+|++++.+++.+..|+..+......+++|+++|+||+|+.+.. ...+.... . ...++++++|||++|.|
T Consensus 101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~g 177 (192)
T 2b6h_A 101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM---PVSELTDKLGLQHLRSRTWYVQATCATQGTG 177 (192)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC---CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC---CHHHHHHHhCcccccCCceEEEECcCCCcCC
Confidence 9999999999999999988887764444589999999999997321 11221111 1 11235699999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy10504 255 VNEMFAEIVREMNF 268 (286)
Q Consensus 255 v~~l~~~i~~~i~~ 268 (286)
++++|++|++.+.+
T Consensus 178 i~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 178 LYDGLDWLSHELSK 191 (192)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998754
No 91
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=3.8e-28 Score=200.54 Aligned_cols=164 Identities=24% Similarity=0.284 Sum_probs=128.4
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCC-----------Ccc-ceEEEEE-EECCeEEEEEEEeCCCcccchh
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDP-----------TIE-DFYRKEI-EVDKAPCVLEILDTAGTEQFAS 167 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~-----------t~~-~~~~~~~-~~~~~~~~l~l~DtpG~~~~~~ 167 (286)
....+||+++|++|||||||++.+.+ .+...+.+ |.+ ++....+ ..++..+.+++|||||+++|..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYS-KVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHH-TSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHh-hccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 35679999999999999999976654 44444332 221 1111112 4456677899999999999999
Q ss_pred hhhhcccCccEEEEEEECCC------cccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC
Q psy10504 168 MRDLYIKNGQGFVVVYSLTN------HHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241 (286)
Q Consensus 168 ~~~~~~~~~d~vilv~d~~~------~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 241 (286)
++..+++.+|++++|||+++ ..+++.+..|+..+. ...+++|+++|+||+|+.+ .....+.+.+++..+
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~---~~~~~~~~~~~~~~~ 164 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPD---ALPVEMVRAVVDPEG 164 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTT---CCCHHHHHHHHCTTC
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccc---ccCHHHHHHHHHhcC
Confidence 99999999999999999994 456666666666652 2346899999999999973 366778888888899
Q ss_pred C-CEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 242 C-PFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 242 ~-~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+ +++++||++|.|++++|++|.+.+.+..
T Consensus 165 ~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 165 KFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp CSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 8 9999999999999999999999887643
No 92
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.95 E-value=2.7e-27 Score=194.30 Aligned_cols=160 Identities=21% Similarity=0.275 Sum_probs=124.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.++|+++|++|||||||++++.++.+ ..+.+|.+ .....+..++. .+.+|||||++.+..++..+++.+|++++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g-~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQG-FNIKSVQSQGF--KLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETT-EEEEEEEETTE--EEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCC-eEEEEEEECCE--EEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 4679999999999999999999998754 33445554 33445666654 48999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH-----HhcCCCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA-----QSWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~vSa~~~~gv~ 256 (286)
|+|++++.+++.+..|+..+.......++|+++|+||+|+.+.. ...+..... ...++++++|||++|.|++
T Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~ 166 (181)
T 1fzq_A 90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA---PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166 (181)
T ss_dssp EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC---CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC---CHHHHHHHhCchhccCCceEEEEccCCCCCCHH
Confidence 99999999999999888877654334589999999999997322 122221111 1124579999999999999
Q ss_pred HHHHHHHHHhhc
Q psy10504 257 EMFAEIVREMNF 268 (286)
Q Consensus 257 ~l~~~i~~~i~~ 268 (286)
++|++|.+.+.+
T Consensus 167 ~l~~~l~~~~~~ 178 (181)
T 1fzq_A 167 DGMNWVCKNVNA 178 (181)
T ss_dssp HHHHHHHHTC--
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=5.9e-28 Score=198.95 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=128.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.+||+++|++|+|||||++++..+.+.. +.+|.+ .....+..++.. +.+|||||++++..++..+++.+|++++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~-~~~~~~~~~~~~--~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVG-VNLETLQYKNIS--FEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTT-CCEEEEEETTEE--EEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCc-eEEEEEEECCEE--EEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 367999999999999999999999887754 445554 334556666544 8999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH-HH----HhcCCCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA-LA----QSWGCPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~-~~----~~~~~~~~~vSa~~~~gv~ 256 (286)
|+|++++.+++.+..|+..+......+++|+++|+||+|+.+... ..+... +. ...++++++|||++|.|++
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 172 (189)
T 2x77_A 96 VVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS---EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172 (189)
T ss_dssp EEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC---HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC---HHHHHHHhChhhccCCceEEEEccCCCccCHH
Confidence 999999999999998888877654456899999999999973221 122111 11 1223579999999999999
Q ss_pred HHHHHHHHHhhcCC
Q psy10504 257 EMFAEIVREMNFNP 270 (286)
Q Consensus 257 ~l~~~i~~~i~~~~ 270 (286)
+++++|.+.+.+..
T Consensus 173 ~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 173 EGMDWLVERLREQG 186 (189)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987643
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=4.2e-27 Score=192.39 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=124.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
.+.++|+++|++|||||||++++.++.+ ..+.+|.+ .....+.+++. .+.+|||||++++..++..+++.+|++++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~-~~~~~~~~~~~--~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG-FNVETLSYKNL--KLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT-CCEEEEEETTE--EEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc-cceEEEEECCE--EEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 4679999999999999999999998877 44555654 33455666664 48999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-----cCCCEEEEeCCCCCcHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-----WGCPFIEASAKNKTNVN 256 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~vSa~~~~gv~ 256 (286)
|+|++++.+++.+..|+..+.......++|+++|+||+|+.+. ....+....... .+++++++||++|.|++
T Consensus 92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 168 (183)
T 1moz_A 92 VVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA---LSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168 (183)
T ss_dssp EEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC---CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC---CCHHHHHHHhCcccccCCceEEEEccCCCCcCHH
Confidence 9999999999999998888776443568999999999999732 222333222211 23479999999999999
Q ss_pred HHHHHHHHHhhc
Q psy10504 257 EMFAEIVREMNF 268 (286)
Q Consensus 257 ~l~~~i~~~i~~ 268 (286)
+++++|.+.+.+
T Consensus 169 ~l~~~l~~~~~~ 180 (183)
T 1moz_A 169 EGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.95 E-value=1.2e-26 Score=207.40 Aligned_cols=165 Identities=29% Similarity=0.507 Sum_probs=147.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVV 182 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv 182 (286)
..++|+++|++|+|||||++++.++.+...+.+|+.+.....+..++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 233 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 233 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEE
Confidence 45899999999999999999999999988899999888888888999998899999999999999999999999999999
Q ss_pred EECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCC-----------CCCCCHHHHHHHHHhcCC-CEEEEeC
Q psy10504 183 YSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASH-----------QREVPTLDGQALAQSWGC-PFIEASA 249 (286)
Q Consensus 183 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~-----------~~~~~~~~~~~~~~~~~~-~~~~vSa 249 (286)
||++++.+++++. .|+..+.... +++|+++|+||+|+.+. .+.+...+...+++..++ ++++|||
T Consensus 234 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 311 (332)
T 2wkq_A 234 FSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311 (332)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999999987 6777776643 38999999999999633 256778888889999996 9999999
Q ss_pred CCCCcHHHHHHHHHHHhhcC
Q psy10504 250 KNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~~ 269 (286)
++|.|++++|++|.+.+...
T Consensus 312 ~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 312 LTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TTCTTHHHHHHHHHHHHHC-
T ss_pred CCCcCHHHHHHHHHHHHhcC
Confidence 99999999999999988653
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.90 E-value=2.9e-29 Score=209.57 Aligned_cols=164 Identities=29% Similarity=0.540 Sum_probs=140.5
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
..+.+||+++|++|+|||||+++|.++.+...+.+++.+.....+..++..+.+++|||||++++..++..+++.+|+++
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 35679999999999999999999999988888888888777777778888888899999999999999999999999999
Q ss_pred EEEECCCcccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-----------CCCCHHHHHHHHHhcCC-CEEEE
Q psy10504 181 VVYSLTNHHTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQ-----------REVPTLDGQALAQSWGC-PFIEA 247 (286)
Q Consensus 181 lv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~~-~~~~v 247 (286)
+|||++++.+++++. .|+..+... .+++|+++|+||+|+.+.. +.+...+...+++..+. ++++|
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 999999999999987 677776653 2378999999999997432 13445566677777786 89999
Q ss_pred eCCCCCcHHHHHHHHHHHh
Q psy10504 248 SAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 248 Sa~~~~gv~~l~~~i~~~i 266 (286)
||++|.|++++|++|.+.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998764
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.94 E-value=6.8e-27 Score=194.18 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=119.1
Q ss_pred CCCCCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccchhhh---hhc
Q psy10504 97 DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFASMR---DLY 172 (286)
Q Consensus 97 ~~~~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~---~~~ 172 (286)
....+.+.+||+++|++|||||||++++.+....................+. +..+.+++|||||+++|..+. ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 3445567899999999999999999988775333211111111112222332 555679999999999988876 799
Q ss_pred ccCccEEEEEEECCCc--ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCC------CCCCCHHHHHHHHH----hc
Q psy10504 173 IKNGQGFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASH------QREVPTLDGQALAQ----SW 240 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~------~~~~~~~~~~~~~~----~~ 240 (286)
++++|++|+|||++++ ++++.+..|+..+.. ..+++|+++|+||+|+.+. .+.+.....+.+++ ..
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999997 555666666666543 2458999999999998632 23344445666677 66
Q ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 241 GCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 241 ~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
++++++|||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78999999999 99999999999865
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=2e-25 Score=185.73 Aligned_cols=164 Identities=35% Similarity=0.546 Sum_probs=140.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVV 181 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vil 181 (286)
..++|+++|++|||||||++++.+..+...+.++.+ ++....+.+++..+.+.+|||||++++..++..+++.++++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 468999999999999999999999888777666654 5556778889998889999999999999999999999999999
Q ss_pred EEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHH
Q psy10504 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAE 261 (286)
Q Consensus 182 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~ 261 (286)
|+|+++..+++++..|+..+... ...+.|+++|+||+|+. ..+.....+.+.++...++.++++||+++.|++++|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccc-cccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999998888777653 33478999999999997 44555667788888889999999999999999999999
Q ss_pred HHHHhhc
Q psy10504 262 IVREMNF 268 (286)
Q Consensus 262 i~~~i~~ 268 (286)
|.+.+.+
T Consensus 162 l~~~~~~ 168 (199)
T 2f9l_A 162 ILTEIYR 168 (199)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998754
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=6.6e-27 Score=192.35 Aligned_cols=165 Identities=21% Similarity=0.326 Sum_probs=119.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCcc-ceEEEEEEE---CCeEEEEEEEeCCCcccchhhhhhcccCcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIE-DFYRKEIEV---DKAPCVLEILDTAGTEQFASMRDLYIKNGQ 177 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~-~~~~~~~~~---~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d 177 (286)
.+||+++|++|||||||++++.+. .+...+.+|++ ++....+.. ++..+.+.+|||+|+++|..++..++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 45555666654 333333332 234566999999999999999999999999
Q ss_pred EEEEEEECCCc-ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC---HHHHHHHHHhcCCC----EEEEeC
Q psy10504 178 GFVVVYSLTNH-HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP---TLDGQALAQSWGCP----FIEASA 249 (286)
Q Consensus 178 ~vilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~----~~~vSa 249 (286)
++++|+|++++ .+++.+..|+..+... .++.|+++|+||+|+.+ .+... ....+.+++..+++ ++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSD-EKQRKACMSKITKELLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCC-HHHHHHHHHHHHHHTTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCccc-chhhHHHHHHHHHHHHHhcCCcchhheEEEec
Confidence 99999999997 5789999999888764 24789999999999972 22211 12234445556776 999999
Q ss_pred CCCC-cHHHHHHHHHHHhhcCCC
Q psy10504 250 KNKT-NVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 250 ~~~~-gv~~l~~~i~~~i~~~~~ 271 (286)
+++. |++++++.|.+.+...+.
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~~~~ 181 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLNFKI 181 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHCC--
T ss_pred ccCchhHHHHHHHHHHHHhcccc
Confidence 9996 999999999998876543
No 100
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.94 E-value=1.5e-25 Score=182.15 Aligned_cols=162 Identities=21% Similarity=0.247 Sum_probs=121.6
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
..+.++|+++|++|+|||||+++|.++.+...+.++++ +.....+..++.. +.+|||||++++..++..+++.+|++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~d~~ 82 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKK--ITFLDTPGHEAFTTMRARGAQVTDIV 82 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEE--EEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCce--EEEEECCCCHHHHHHHHHHHhhCCEE
Confidence 34678999999999999999999999888766554433 4445567777766 78999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-------C--CCEEEEeCC
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-------G--CPFIEASAK 250 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~--~~~~~vSa~ 250 (286)
++|+|++++...+.... +... ...++|+++|+||+|+.+. ...+........ + ++++++||+
T Consensus 83 i~v~d~~~~~~~~~~~~----l~~~-~~~~~p~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 153 (178)
T 2lkc_A 83 ILVVAADDGVMPQTVEA----INHA-KAANVPIIVAINKMDKPEA----NPDRVMQELMEYNLVPEEWGGDTIFCKLSAK 153 (178)
T ss_dssp EEEEETTCCCCHHHHHH----HHHH-GGGSCCEEEEEETTTSSCS----CHHHHHHHHTTTTCCBTTTTSSEEEEECCSS
T ss_pred EEEEECCCCCcHHHHHH----HHHH-HhCCCCEEEEEECccCCcC----CHHHHHHHHHhcCcChhHcCCcccEEEEecC
Confidence 99999998654333322 2221 1237899999999999732 122222222221 2 479999999
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCc
Q psy10504 251 NKTNVNEMFAEIVREMNFNPEKD 273 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~~~~~~ 273 (286)
+|.|++++|++|.+.+...+.+.
T Consensus 154 ~~~gv~~l~~~l~~~~~~~~~~~ 176 (178)
T 2lkc_A 154 TKEGLDHLLEMILLVSEMEELKA 176 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTTS
T ss_pred CCCCHHHHHHHHHHhhhhhcccc
Confidence 99999999999999887655443
No 101
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.93 E-value=9.7e-26 Score=182.11 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=115.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-cCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhccc-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYIK- 174 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~~- 174 (286)
+.++|+++|++|+|||||+++|.+..+... +++++.+.....+.+++.. +.+|||||++++. .+...+++
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEE--EEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcE--EEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 468999999999999999999998765433 3333345555666677654 8999999998875 34456665
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 175 -NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 175 -~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
++|++++|+|+++.. ....|+..+.. .++|+++|+||+|+.. .+.+.. +.+.+++.++++++++||++|.
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~----~~~p~ilv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~SA~~~~ 150 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLME----MGANLLLALNKMDLAK-SLGIEI-DVDKLEKILGVKVVPLSAAKKM 150 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHH----TTCCEEEEEECHHHHH-HTTCCC-CHHHHHHHHTSCEEECBGGGTB
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHh----cCCCEEEEEEchHhcc-ccChhh-HHHHHHHHhCCCEEEEEcCCCC
Confidence 899999999998753 34456666554 2789999999999862 222222 3567778888999999999999
Q ss_pred cHHHHHHHHHHHhh
Q psy10504 254 NVNEMFAEIVREMN 267 (286)
Q Consensus 254 gv~~l~~~i~~~i~ 267 (286)
|++++|++|.+.+.
T Consensus 151 ~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 151 GIEELKKAISIAVK 164 (165)
T ss_dssp SHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998764
No 102
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.93 E-value=1e-25 Score=189.21 Aligned_cols=161 Identities=18% Similarity=0.256 Sum_probs=116.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCe-EEEEEEEeCCCcccchh-hhhhcccCccEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKA-PCVLEILDTAGTEQFAS-MRDLYIKNGQGF 179 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~l~DtpG~~~~~~-~~~~~~~~~d~v 179 (286)
.+.+||+++|++|+|||||+++|+++.+...+.++..+... +.+++. .+.+++|||||++++.. ++..+++.+|++
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35689999999999999999999999888877766544433 556643 46699999999999998 888999999999
Q ss_pred EEEEECCCcc-cHHHHHHHHHHHHHH--hCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH---H---------------
Q psy10504 180 VVVYSLTNHH-TFQDIKQMKELITRV--KGSERVPILLVANKLDLASHQREVPTLDGQALA---Q--------------- 238 (286)
Q Consensus 180 ilv~d~~~~~-s~~~~~~~~~~i~~~--~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~---~--------------- 238 (286)
++|+|+++.. ++.....++..+... ...+++|+++|+||+|+.+.... ....+.+. .
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~l~~~l~~~~~~~~~~~s~~~~ 160 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--KLIQQQLEKELNTLRVTRSAAPSTLDS 160 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--HHHHHHHHHHHHHHHHHCC--------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--HHHHHHHHHHHHHHhccchhccccccC
Confidence 9999999853 455555544443322 13457899999999999733221 11111111 0
Q ss_pred ------------------hc--CCCEEEEeCCCC------CcHHHHHHHHHHHh
Q psy10504 239 ------------------SW--GCPFIEASAKNK------TNVNEMFAEIVREM 266 (286)
Q Consensus 239 ------------------~~--~~~~~~vSa~~~------~gv~~l~~~i~~~i 266 (286)
.. +++|++|||++| .|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998753
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=202.12 Aligned_cols=163 Identities=16% Similarity=0.271 Sum_probs=122.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+|+|++|||||||+++|.++.+...+ +|.+ .....+...+. .+++|||||++.|..++..+++.+|++
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~-~~~~~~~~~~~--~l~i~Dt~G~~~~~~~~~~~~~~ad~v 236 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIG-FNVETVEYKNI--SFTVWDVGGQDKIRPLWRHYFQNTQGL 236 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETT-EEEEEEEETTE--EEEEEECC-----CCSHHHHHTTEEEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccc-eEEEEEecCcE--EEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 3456789999999999999999999998876554 3433 33444555554 499999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH-----hcCCCEEEEeCCCCCc
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ-----SWGCPFIEASAKNKTN 254 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~vSa~~~~g 254 (286)
|+|||++++.+++.+..|+..+......+++|+++|+||+|+.+... ..+...... ..++++++|||++|.|
T Consensus 237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~---~~~i~~~~~~~~~~~~~~~~~~vSAk~g~g 313 (329)
T 3o47_A 237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN---AAEITDKLGLHSLRHRNWYIQATCATSGDG 313 (329)
T ss_dssp EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC---HHHHHHHHTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC---HHHHHHHhchhhhhcCCCEEEEEECCCCcC
Confidence 99999999999999998888777655556899999999999973221 222211111 1235699999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy10504 255 VNEMFAEIVREMNFN 269 (286)
Q Consensus 255 v~~l~~~i~~~i~~~ 269 (286)
++++|++|.+.+.+.
T Consensus 314 i~el~~~l~~~l~~~ 328 (329)
T 3o47_A 314 LYEGLDWLSNQLRNQ 328 (329)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
No 104
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.93 E-value=1.9e-24 Score=178.90 Aligned_cols=163 Identities=35% Similarity=0.557 Sum_probs=141.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
...++|+++|++|||||||++++.+..+...+.+|++ ++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 3569999999999999999999999888777777665 445677888998888899999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~ 260 (286)
+|+|+++..+++++..|+..+... ...+.|+++++||+|+. ..+.....+.+.++...++.++++||+++.|++++|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~-~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~ 184 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLR-HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQ 184 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGG-GGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccc-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 999999999999988888776653 23478999999999997 4445667778889999999999999999999999999
Q ss_pred HHHHHh
Q psy10504 261 EIVREM 266 (286)
Q Consensus 261 ~i~~~i 266 (286)
+|.+.+
T Consensus 185 ~l~~~i 190 (191)
T 1oix_A 185 TILTEI 190 (191)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998865
No 105
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.8e-26 Score=197.27 Aligned_cols=165 Identities=24% Similarity=0.366 Sum_probs=125.0
Q ss_pred CCcceEEEEEECCC---------CCcHHHHHHHHhc---CcCCCccCCCc-c-ceEEEE--------------EEECCeE
Q psy10504 100 FTMREFKVVVLGSG---------GVGKSALTVQFVS---GCFMEKYDPTI-E-DFYRKE--------------IEVDKAP 151 (286)
Q Consensus 100 ~~~~~~kV~ivG~~---------~~GKTSLi~~l~~---~~~~~~~~~t~-~-~~~~~~--------------~~~~~~~ 151 (286)
...+.+||+++|++ |||||||+++|.+ +.+...+.+++ + ++.... ...++..
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 34567999999999 9999999999999 56666666664 2 211111 1245667
Q ss_pred EEEEEEe-----------------------CCCcccchhhhhhccc---------------------CccEEEEEEECCC
Q psy10504 152 CVLEILD-----------------------TAGTEQFASMRDLYIK---------------------NGQGFVVVYSLTN 187 (286)
Q Consensus 152 ~~l~l~D-----------------------tpG~~~~~~~~~~~~~---------------------~~d~vilv~d~~~ 187 (286)
+.+.+|| ++|+++|..++..+++ ++|++|+|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7799999 7788888888888888 7999999999999
Q ss_pred c--ccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 188 H--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-WGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 188 ~--~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
+ .+++.+..|+..+......+++|+++|+||+|+. ..+.+ .+.+.+++. .+++++++||++|.|++++|++|++
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~-~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~ 251 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGB-CHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEccccc-ccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 8 9999999999888765333579999999999996 22222 455666665 4789999999999999999999998
Q ss_pred Hhh
Q psy10504 265 EMN 267 (286)
Q Consensus 265 ~i~ 267 (286)
.+.
T Consensus 252 ~l~ 254 (255)
T 3c5h_A 252 LID 254 (255)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=5.2e-25 Score=195.80 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=129.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc-----hhhhhhcccC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF-----ASMRDLYIKN 175 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~-----~~~~~~~~~~ 175 (286)
..+||+++|++|||||||++++.++ .+...+.+++.+.....+.+++ .+.+.+|||||++++ ..++..++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQM 80 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence 4689999999999999999999987 4444344444455555566544 466999999999988 7788899999
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCC-CCC----CCHHHHHHHHHhcC---CCEEE
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASH-QRE----VPTLDGQALAQSWG---CPFIE 246 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~-~~~----~~~~~~~~~~~~~~---~~~~~ 246 (286)
+|++++|||++++.+++++..|...+.... ..+++|+++|+||+|+.+. .+. ....+.+.+++.++ +++++
T Consensus 81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~ 160 (307)
T 3r7w_A 81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP 160 (307)
T ss_dssp CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence 999999999999999999987766554432 2468999999999999731 222 44467778888887 78999
Q ss_pred EeCCCCCcHHHHHHHHHHHhh
Q psy10504 247 ASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~ 267 (286)
+||++ .|+.++|..+++.+.
T Consensus 161 tSa~~-~~i~e~~~~iv~~li 180 (307)
T 3r7w_A 161 TSIWD-ESLYKAWSQIVCSLI 180 (307)
T ss_dssp CCTTS-SHHHHHHHHHHHTTC
T ss_pred eeecC-ChHHHHHHHHHHHHc
Confidence 99999 899999999988654
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=1.1e-24 Score=205.87 Aligned_cols=165 Identities=16% Similarity=0.271 Sum_probs=127.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEE
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGF 179 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~v 179 (286)
...+.+||+++|.+|+|||||+++|.++.+... .+|.+ .....+...+. .+.+|||||++.|..++..+++.+|++
T Consensus 318 ~~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~-~~T~~-~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~ad~~ 393 (497)
T 3lvq_E 318 LSNKEMRILMLGLDAAGKTTILYKLKLGQSVTT-IPTVG-FNVETVTYKNV--KFNVWDVGGQDKIRPLWRHYYTGTQGL 393 (497)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSS-EEEEEEESSSC--EEEEEEECCCGGGSGGGGGGGTTCCEE
T ss_pred ccccceeEEEEcCCCCCHHHHHHHHhcCCCCCc-CCccc-eeEEEEEeCCE--EEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 345679999999999999999999999886543 34443 34444555554 489999999999999999999999999
Q ss_pred EEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--------CCEEEEeCCC
Q psy10504 180 VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--------CPFIEASAKN 251 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~vSa~~ 251 (286)
|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.. ... .+....+ +++++|||++
T Consensus 394 i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 394 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM---KPH---EIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCC---CHH---HHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCC---CHH---HHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999999999998888765445689999999999997321 222 2222222 4599999999
Q ss_pred CCcHHHHHHHHHHHhhcCCCCcC
Q psy10504 252 KTNVNEMFAEIVREMNFNPEKDN 274 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~~~~~ 274 (286)
|.|++++|++|.+.+........
T Consensus 468 g~gi~~l~~~l~~~~~~~~~~~~ 490 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLAAAL 490 (497)
T ss_dssp TBTHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999876655443
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=3.6e-24 Score=181.97 Aligned_cols=162 Identities=12% Similarity=0.121 Sum_probs=115.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcc------c----chhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE------Q----FASMRD 170 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~------~----~~~~~~ 170 (286)
.+.++|+++|++|||||||+++|+++.+. .....++.+.....+..++.. +.+|||||+. . +..+ .
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~-~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNK--YQIIDTPGLLDRAFENRNTIEMTTI-T 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEE--EEEEECTTTTTSCGGGCCHHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCe--EEEEECCCCcCcccchhhhHHHHHH-H
Confidence 46799999999999999999999998764 233344444444555556544 8999999983 3 2222 3
Q ss_pred hcccCccEEEEEEECCCcccHHH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH---HHHHHHHhcC--CC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQD--IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL---DGQALAQSWG--CP 243 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~---~~~~~~~~~~--~~ 243 (286)
.++..+|++++|+|++++.+++. ...|+..+.. ..+++|+++|+||+|+.+ .+.+... ....++...+ ++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~--~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 180 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKS--VFSNKSIVIGFNKIDKCN-MDSLSIDNKLLIKQILDNVKNPIK 180 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHT--CC-CCCEEEEEECGGGCC---CCCHHHHHHHHHHHHHCCSCEE
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHH--hhcCCcEEEEEeCcccCC-chhhHHHHHHHHHHHHHhcCCCce
Confidence 45788999999999999877652 2344444443 234799999999999973 3444433 4556666666 88
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
+++|||++|.|++++|++|++.+.+.
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~i~~~ 206 (228)
T 2qu8_A 181 FSSFSTLTGVGVEQAKITACELLKND 206 (228)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.92 E-value=5.7e-25 Score=179.08 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=117.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------hhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM--------RDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~--------~~~~ 172 (286)
...+|+++|++|+|||||+++|.+..+ ...+++++.+.....+.+++.. +.+|||||++++... ...+
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMP--LHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEE--EEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeE--EEEEECCCcccchhHHHHHHHHHHHHH
Confidence 458999999999999999999998753 4556667777778888888866 789999998754221 1245
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+++. ..|+..+... ...++|+++|+||+|+.+.... ++...+.+++++||++|
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~SA~~g 150 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETLG--------MSEVNGHALIRLSARTG 150 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCCE--------EEEETTEEEEECCTTTC
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchhh--------hhhccCCceEEEeCCCC
Confidence 789999999999999888763 4666666653 3347999999999998632211 11124578999999999
Q ss_pred CcHHHHHHHHHHHhhcCC
Q psy10504 253 TNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~ 270 (286)
.|++++|++|.+.+....
T Consensus 151 ~gv~~l~~~l~~~~~~~~ 168 (172)
T 2gj8_A 151 EGVDVLRNHLKQSMGFDT 168 (172)
T ss_dssp TTHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 999999999999876544
No 110
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=1.8e-24 Score=172.79 Aligned_cols=150 Identities=22% Similarity=0.262 Sum_probs=109.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCccc-------chhhhhhcccC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ-------FASMRDLYIKN 175 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~-------~~~~~~~~~~~ 175 (286)
+||+++|++|+|||||++++.++.+ ....++++.+.....+..++.. +.+|||||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGR--FLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEE--EEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCce--EEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 6899999999999999999998764 3445555556667777777775 88999999887 34456678899
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCCCc
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN 254 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~~g 254 (286)
+|++++|+|++++.+... .++...... .++|+++|+||+|+.+.. .+...+. ..+. +++++||++|.|
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~-----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE-----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG-----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch-----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 999999999998654433 222222221 378999999999997331 2223334 5666 899999999999
Q ss_pred HHHHHHHHHHHhh
Q psy10504 255 VNEMFAEIVREMN 267 (286)
Q Consensus 255 v~~l~~~i~~~i~ 267 (286)
++++|++|.+.++
T Consensus 149 v~~l~~~l~~~l~ 161 (161)
T 2dyk_A 149 LEELLEAIWERLP 161 (161)
T ss_dssp HHHHHHHHHHHCC
T ss_pred hHHHHHHHHHhCc
Confidence 9999999998763
No 111
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=8.9e-24 Score=187.90 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=132.9
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEEC-CeEEEEEEEeCCCcccch----------
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVD-KAPCVLEILDTAGTEQFA---------- 166 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~l~l~DtpG~~~~~---------- 166 (286)
.+++.-.|+++|++|||||||+|+|.+..+. ...++++..........+ +.+ +.||||||+.++.
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~--i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQ--IIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEE--EEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCe--EEEEECcCCCccccchhHHHHHH
Confidence 4556789999999999999999999998764 455566666666666666 555 8899999986544
Q ss_pred hhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCE
Q psy10504 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPF 244 (286)
Q Consensus 167 ~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~ 244 (286)
.....+++.+|++++|+|++++.+.++...|+..+.. .++|+++|+||+|+. ..+.......+.+.+..+ .++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~-~~~~~~~~~~~~l~~~~~~~~~i 158 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKI-GPAKNVLPLIDEIHKKHPELTEI 158 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGS-SSGGGGHHHHHHHHHHCTTCCCE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCC-CCHHHHHHHHHHHHHhccCCCeE
Confidence 4567788999999999999999888887777776665 278999999999996 234444556677777775 889
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCCC
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~~~~ 271 (286)
+++||++|.|+++++++|.+.+++.+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence 999999999999999999999987654
No 112
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.91 E-value=2e-24 Score=177.27 Aligned_cols=159 Identities=18% Similarity=0.249 Sum_probs=122.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCc-cCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEK-YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYI 173 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~ 173 (286)
+++.++|+++|++|||||||+++|.+..+... +++++.+.....+..++.. +.+|||||++.+. .++..++
T Consensus 4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (188)
T 2wjg_A 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK--FKVVDLPGVYSLTANSIDEIIARDYI 81 (188)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE--EEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE--EEEEECCCcCccccccHHHHHHHHHH
Confidence 35779999999999999999999998655333 3333445566667777654 8999999998875 3456666
Q ss_pred c--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 174 K--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 174 ~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
. .+|++++|+|+++ ++....|+..+.. .+.|+++|+||+|+... +.+. ...+.+++..+++++++||++
T Consensus 82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~~~~Sa~~ 152 (188)
T 2wjg_A 82 INEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKS-LGIE-IDVDKLEKILGVKVVPLSAAK 152 (188)
T ss_dssp HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBGGG
T ss_pred hccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhcccc-ccch-HHHHHHHHHhCCCeEEEEecC
Confidence 4 4999999999875 4555666666554 37899999999998622 2222 345677888899999999999
Q ss_pred CCcHHHHHHHHHHHhhcCC
Q psy10504 252 KTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~ 270 (286)
+.|++++|+++.+.+.+..
T Consensus 153 ~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 153 KMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp TBSHHHHHHHHHHHHTTC-
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9999999999999987765
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=9.4e-25 Score=179.27 Aligned_cols=159 Identities=21% Similarity=0.265 Sum_probs=118.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC-----------cccchhhhhhcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG-----------TEQFASMRDLYI 173 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG-----------~~~~~~~~~~~~ 173 (286)
+||+++|++|+|||||++++.++.+...+.++++. ....+... .+.+||||| ++.+..++..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~-~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 76 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTR-KIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI 76 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTT-SCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccc-eeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHHH
Confidence 68999999999999999999998887666555432 22233333 388999999 677788888888
Q ss_pred cC-ccEEEEEEECCCcccHHHH-HHHHHH--------HHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCC
Q psy10504 174 KN-GQGFVVVYSLTNHHTFQDI-KQMKEL--------ITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCP 243 (286)
Q Consensus 174 ~~-~d~vilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 243 (286)
+. ++++++|+++.|..+++++ ..|... +.......++|+++|+||+|+.+. + ....+.+++..+.+
T Consensus 77 ~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-~---~~~~~~~~~~~~~~ 152 (190)
T 2cxx_A 77 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN-V---QEVINFLAEKFEVP 152 (190)
T ss_dssp HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC-H---HHHHHHHHHHHTCC
T ss_pred HhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc-H---HHHHHHHHHHhhhh
Confidence 87 8877777887777777776 445432 222222247999999999999732 2 45677788888764
Q ss_pred -------EEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 244 -------FIEASAKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 244 -------~~~vSa~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
+++|||++|.|++++|++|.+.+.+...+
T Consensus 153 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~ 188 (190)
T 2cxx_A 153 LSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQGR 188 (190)
T ss_dssp GGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC---
T ss_pred hhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhcc
Confidence 79999999999999999999998775543
No 114
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.91 E-value=2.3e-24 Score=177.99 Aligned_cols=156 Identities=18% Similarity=0.270 Sum_probs=107.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceE-EEEEEECCeEEEEEEEeCCC----------cccchhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY-RKEIEVDKAPCVLEILDTAG----------TEQFASMRD 170 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~~ 170 (286)
...++|+++|++|+|||||+++|.++.+...+.++.+... ......++ . +.+||||| ++.+..++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND-E--LHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT-T--EEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC-c--EEEEECCCCCccccCHHHHHHHHHHHH
Confidence 4679999999999999999999999875554444333111 22233333 3 88999999 777888888
Q ss_pred hcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHH----hcCCC
Q psy10504 171 LYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQ----SWGCP 243 (286)
Q Consensus 171 ~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~ 243 (286)
.+++.+ |++++|+|++++.+..+.. ++..+.. .++|+++|+||+|+.+ .+.... ..+.+.+ ..+.+
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~~~~ 170 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIP-KGKWDK-HAKVVRQTLNIDPEDE 170 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSC-GGGHHH-HHHHHHHHHTCCTTSE
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCC-hHHHHH-HHHHHHHHHcccCCCc
Confidence 888777 9999999999988777643 2222222 3789999999999973 222211 1122222 23578
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
++++||++|.|++++|++|.+.+.
T Consensus 171 ~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 171 LILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHT
T ss_pred eEEEEccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999998775
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.90 E-value=1.3e-23 Score=172.94 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=111.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCC----------cccchhhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASMR 169 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~ 169 (286)
+....++|+++|++|+|||||++++.+..+.. ..++.+..........+.. +.+||||| ++.+..++
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~--~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 19 PPPLKGEVAFVGRSNVGKSSLLNALFNRKIAF-VSKTPGKTRSINFYLVNSK--YYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSC-CCSSCCCCCCEEEEEETTT--EEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHcCcccc-ccCCCCCccCeEEEEECCc--EEEEECCCCccccCChhhHHHHHHHH
Confidence 34567899999999999999999999976332 2222221112222222333 77999999 66777777
Q ss_pred hhcccCc---cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC-CCE
Q psy10504 170 DLYIKNG---QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG-CPF 244 (286)
Q Consensus 170 ~~~~~~~---d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~-~~~ 244 (286)
..+++.+ |++++|+|++++.+..... +...+.. .++|+++|+||+|+.+.. ......+........+ +++
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLM-MVEWMKS----LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI 170 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence 7777665 9999999998865544332 2222222 178999999999997322 2222334444555534 799
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+++||++|.|++++|++|.+.+.+
T Consensus 171 ~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 171 IPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred EEEecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999999998864
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.90 E-value=2.3e-23 Score=180.72 Aligned_cols=156 Identities=16% Similarity=0.188 Sum_probs=120.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh------hhhcc-
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM------RDLYI- 173 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~------~~~~~- 173 (286)
.+.++|+++|++|+|||||+++|.+..+ ...+++++.+.....+...+.. +.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYT--INLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE--EEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeE--EEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 4679999999999999999999998765 3445555556566666666654 899999999887653 35555
Q ss_pred -cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 174 -KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 174 -~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
..+|++++|+|+++.++. ..|...+.. .++|+++|+||+|+.+ .+... .+...+++.++++++++||++|
T Consensus 81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~-~~~i~-~~~~~l~~~lg~~vi~~SA~~g 151 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAK-KTGMK-IDRYELQKHLGIPVVFTSSVTG 151 (258)
T ss_dssp HSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHH-HTTCC-BCHHHHHHHHCSCEEECCTTTC
T ss_pred hcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCC-ccchH-HHHHHHHHHcCCCEEEEEeeCC
Confidence 589999999999986533 234444443 2789999999999862 22222 2367788889999999999999
Q ss_pred CcHHHHHHHHHHHhhc
Q psy10504 253 TNVNEMFAEIVREMNF 268 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~ 268 (286)
.|++++|+++.+.+..
T Consensus 152 ~gi~el~~~i~~~~~~ 167 (258)
T 3a1s_A 152 EGLEELKEKIVEYAQK 167 (258)
T ss_dssp TTHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999999998763
No 117
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.90 E-value=1.3e-24 Score=192.95 Aligned_cols=155 Identities=17% Similarity=0.205 Sum_probs=114.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---hhhhcccCccEE
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---MRDLYIKNGQGF 179 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---~~~~~~~~~d~v 179 (286)
||+++|+.|||||||++++.++.+.. .+.+|++.... . ++ ..+.+++||||||++|.. ++..|+++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~-~--v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~ 76 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE-H--FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGAL 76 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE-E--EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE-E--Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEE
Confidence 68999999999999999888764432 24455543222 2 22 346699999999999974 468999999999
Q ss_pred EEEEECCCcccHHHHHHH---HHHHHHHhCCCCCcEEEEEeCCCCCCCC------CCCCHHHHHHHHHh----cCCCEEE
Q psy10504 180 VVVYSLTNHHTFQDIKQM---KELITRVKGSERVPILLVANKLDLASHQ------REVPTLDGQALAQS----WGCPFIE 246 (286)
Q Consensus 180 ilv~d~~~~~s~~~~~~~---~~~i~~~~~~~~~piivv~nK~Dl~~~~------~~~~~~~~~~~~~~----~~~~~~~ 246 (286)
|+|||++++ ..+....| +..+.. ..+++|+++++||+|+.+.. +.+...+.+.+++. .+++|++
T Consensus 77 IlV~Ditd~-~~~~~~~l~~~l~~~~~--~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 77 VYVIDSQDE-YINAITNLAMIIEYAYK--VNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEECCCSSC-TTHHHHHHHHHHHHHHH--HCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEECCch-HHHHHHHHHHHHHHHhh--cCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 999999998 33333333 333333 24689999999999997332 34555556666664 5789999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhc
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+||++ .+|.++|..|++.+..
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSST
T ss_pred eccCC-CcHHHHHHHHHHHHHh
Confidence 99998 6999999999998754
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.90 E-value=2.1e-23 Score=198.72 Aligned_cols=165 Identities=16% Similarity=0.241 Sum_probs=123.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEE---------EECCeEEEEEEEeCCCcccchhhhhh
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI---------EVDKAPCVLEILDTAGTEQFASMRDL 171 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~l~DtpG~~~~~~~~~~ 171 (286)
+.+.+||+++|.+|||||||++++.++.+...+.+|++....... ..++..+.+.+|||||++.+..++..
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 457899999999999999999999999888877777764444321 12233466999999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
+++.+|++++|+|+++. +....|+..+.... +++|+++|+||+|+. ..+.+...+.+......+++++++||++
T Consensus 118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~-~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 191 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDEN-PSYNIEQKKINERFPAIENRFHRISCKN 191 (535)
T ss_dssp HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTC-TTCCCCHHHHHHHCGGGTTCEEECCC--
T ss_pred HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcc-cccccCHHHHHHHHHhcCCceEEEecCc
Confidence 99999999999999765 55677888887753 378999999999997 4555667777888888889999999999
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q psy10504 252 KTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~~ 271 (286)
|.|+++++++|.+.+.+.+.
T Consensus 192 g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 192 GDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp ---CTTHHHHHHHHHTCTTS
T ss_pred ccCHHHHHHHHHHHHhcccc
Confidence 99999999999999987654
No 119
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.89 E-value=1.7e-23 Score=182.86 Aligned_cols=154 Identities=16% Similarity=0.217 Sum_probs=115.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccch------hhhhhccc-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA------SMRDLYIK- 174 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~------~~~~~~~~- 174 (286)
+.++|+++|++|||||||+++|.+.. ++..+++++.+.....+ .. ...+.+|||||+..+. .++..++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--KK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--TT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--ec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 35899999999999999999999865 45556555544444443 32 3348999999998876 35566665
Q ss_pred -CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 175 -NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 175 -~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
.+|++++|+|+++.++ ...|...+.. .++|+++|+||+|+... +... .....+++.++++++++||++|.
T Consensus 79 ~~~d~vi~V~D~t~~e~---~~~~~~~l~~----~~~p~ilv~NK~Dl~~~-~~~~-~~~~~l~~~lg~~vi~~SA~~g~ 149 (272)
T 3b1v_A 79 QRADSILNVVDATNLER---NLYLTTQLIE----TGIPVTIALNMIDVLDG-QGKK-INVDKLSYHLGVPVVATSALKQT 149 (272)
T ss_dssp TCCSEEEEEEEGGGHHH---HHHHHHHHHH----TCSCEEEEEECHHHHHH-TTCC-CCHHHHHHHHTSCEEECBTTTTB
T ss_pred CCCCEEEEEecCCchHh---HHHHHHHHHh----cCCCEEEEEEChhhCCc-CCcH-HHHHHHHHHcCCCEEEEEccCCC
Confidence 6999999999988543 3345445544 37899999999998622 2222 34567788889999999999999
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++|++|.+.+..
T Consensus 150 gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 150 GVDQVVKKAAHTTTS 164 (272)
T ss_dssp SHHHHHHHHHHSCTT
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987654
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.89 E-value=9.1e-24 Score=184.85 Aligned_cols=156 Identities=17% Similarity=0.277 Sum_probs=118.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hhhh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MRDL 171 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~~~ 171 (286)
+.++|+++|.+|+|||||+|+|.+..+. ..+++++.+.....+...+.. +.+|||||+..+.. +...
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQ--VTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCE--EEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCc--eEEEECcCCCccccccccCCHHHHHHHH
Confidence 5689999999999999999999987653 344555556667777777766 78899999988763 2233
Q ss_pred cc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 172 YI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 172 ~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
++ +.+|++++|+|+++.+.. ..+...+... ++|+++|+||+|+.+.. .. ......+.+.++++++++||
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~---~~~~~~l~~~----~~p~ivv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~~i~~SA 150 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERN---LYLTLQLLEL----GIPCIVALNMLDIAEKQ-NI-RIEIDALSARLGCPVIPLVS 150 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHH---HHHHHHHHHH----TCCEEEEEECHHHHHHT-TE-EECHHHHHHHHTSCEEECCC
T ss_pred HHhhcCCCEEEEEecCCChHHH---HHHHHHHHhc----CCCEEEEEECccchhhh-hH-HHHHHHHHHhcCCCEEEEEc
Confidence 33 789999999999885433 3333344442 78999999999986222 11 12346677888999999999
Q ss_pred CCCCcHHHHHHHHHHHhhcC
Q psy10504 250 KNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~~ 269 (286)
++|.|+++++++|.+.+...
T Consensus 151 ~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 151 TRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GGGHHHHHHHHHHHTCCCCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999887654
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.89 E-value=1.7e-23 Score=181.26 Aligned_cols=150 Identities=14% Similarity=0.246 Sum_probs=116.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----------hhhhcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----------MRDLYI 173 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----------~~~~~~ 173 (286)
.+|+++|.+|+|||||+|+|.+... ...+++++.+.....+..++.. +.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~--~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHL--IEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEE--EEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeE--EEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 4899999999999999999998754 4455556667777788888875 89999999987764 456677
Q ss_pred --cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC
Q psy10504 174 --KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN 251 (286)
Q Consensus 174 --~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~ 251 (286)
+.+|++++|+|+++.++...+. ..+.. .++|+++|+||+|+.+.. .. ......+.+.++++++++||++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l~---~~l~~----~~~pvilv~NK~Dl~~~~-~~-~~~~~~l~~~lg~~vi~~SA~~ 150 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYLT---SQLFE----LGKPVVVALNMMDIAEHR-GI-SIDTEKLESLLGCSVIPIQAHK 150 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHHH---HHHTT----SCSCEEEEEECHHHHHHT-TC-EECHHHHHHHHCSCEEECBGGG
T ss_pred hhCCCCEEEEEeeCCCchhHHHHH---HHHHH----cCCCEEEEEEChhcCCcC-Cc-HHHHHHHHHHcCCCEEEEECCC
Confidence 8899999999999854433322 22222 378999999999986222 11 1234557788899999999999
Q ss_pred CCcHHHHHHHHHHH
Q psy10504 252 KTNVNEMFAEIVRE 265 (286)
Q Consensus 252 ~~gv~~l~~~i~~~ 265 (286)
|.|+++++++|.+.
T Consensus 151 g~gi~el~~~i~~~ 164 (256)
T 3iby_A 151 NIGIPALQQSLLHC 164 (256)
T ss_dssp TBSHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999987
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.89 E-value=5.9e-23 Score=173.27 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=109.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchh
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFAS 167 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~ 167 (286)
....++|+++|++|+|||||+++|++.. ......+++.+.....+.. .....+.+|||||. +.+..
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP-AAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC-TTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC-CCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3457899999999999999999999976 3344444444333333321 22234889999994 44455
Q ss_pred hhhhcccC---ccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-CHHHH-HHHHHh---
Q psy10504 168 MRDLYIKN---GQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV-PTLDG-QALAQS--- 239 (286)
Q Consensus 168 ~~~~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~-~~~~~~--- 239 (286)
+...+++. +|++++|+|++++.+... ..++..+.. .++|+++|+||+|+.+..... ..... +.+...
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 66666655 888999999998654332 333444433 378999999999997221110 01111 222222
Q ss_pred ---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 240 ---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 240 ---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
.+.+++++||++|.|+++++++|.+.+......
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-----
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCCc
Confidence 457899999999999999999999998765443
No 123
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=3.1e-22 Score=187.42 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=103.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh--------hhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR--------DLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--------~~~ 172 (286)
..++|+++|++|+|||||+|+|.+.. +...+++++.+.....+.+++.. +.+|||||+.++...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~--l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTM--FRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEE--EEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeE--EEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 45899999999999999999999874 46677778888888888888876 8999999998766443 347
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+++++..+...+... .++|+++|+||+|+.+... . ..+.+.+....+++++||++|
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~-~---~~~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANAD-A---LIRAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTH-H---HHHHHHHHHTSCEEECBTTTT
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccc-h---hHHHHHhcCCCceEEEEECCC
Confidence 89999999999999998886554444444432 2789999999999973222 1 223344433478999999999
Q ss_pred CcHHHHHHHHHHHhh
Q psy10504 253 TNVNEMFAEIVREMN 267 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~ 267 (286)
.|+++++++|.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999987
No 124
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.88 E-value=1.7e-22 Score=176.43 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=120.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh------hhhhcc--
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS------MRDLYI-- 173 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~------~~~~~~-- 173 (286)
+.++|+++|++|+|||||+++|.+..+.. ..++++.+.....+..++.. +.+|||||+..+.. +...++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKE--FLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEE--EEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCce--EEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 56899999999999999999999976643 33444446666777777776 88999999988776 555666
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKT 253 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~ 253 (286)
..+|++++|+|+++.. ....++..+... ..+|+++|+||+|+.+ .+.... ....+.+.++++++++||++|.
T Consensus 80 ~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~-~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~ 151 (271)
T 3k53_A 80 GNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLK-KKGAKI-DIKKMRKELGVPVIPTNAKKGE 151 (271)
T ss_dssp TCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHH-HHTCCC-CHHHHHHHHSSCEEECBGGGTB
T ss_pred cCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCc-ccccHH-HHHHHHHHcCCcEEEEEeCCCC
Confidence 6899999999998853 223333334332 1389999999999852 121211 2667788889999999999999
Q ss_pred cHHHHHHHHHHHhhcCC
Q psy10504 254 NVNEMFAEIVREMNFNP 270 (286)
Q Consensus 254 gv~~l~~~i~~~i~~~~ 270 (286)
|++++++++.+.+....
T Consensus 152 gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 152 GVEELKRMIALMAEGKV 168 (271)
T ss_dssp THHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999999887654
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.88 E-value=3.7e-22 Score=176.83 Aligned_cols=158 Identities=23% Similarity=0.222 Sum_probs=116.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc--------chhhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ--------FASMRDL 171 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~--------~~~~~~~ 171 (286)
.+..+|+++|++|+|||||+|+|++..+. ...+.|+.+.....+..++.+ +.||||||+.+ +......
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~--l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQ--IVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEE--EEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcE--EEEecCccccchhhHHHHHHHHHHHH
Confidence 45678999999999999999999998764 344556666555555555555 89999999876 4455667
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHH-HHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh-cC-CCEEEEe
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMK-ELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS-WG-CPFIEAS 248 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~-~~~~~vS 248 (286)
+++.+|++++|+|++++.+..+ .|+ ..+... .+++|+++|+||+|+...... ....... .+ .+++++|
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~~~iS 153 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPED--ELVARALKPL--VGKVPILLVGNKLDAAKYPEE-----AMKAYHELLPEAEPRMLS 153 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG--TTTSCEEEEEECGGGCSSHHH-----HHHHHHHTSTTSEEEECC
T ss_pred HHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh--cCCCCEEEEEECcccCCchHH-----HHHHHHHhcCcCcEEEEe
Confidence 8899999999999998765443 333 333332 247899999999999722110 1222222 22 5789999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCC
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~ 270 (286)
|++|.|+++++++|.+.+++.+
T Consensus 154 A~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 154 ALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCCBCC
T ss_pred CCCCCCHHHHHHHHHHhcccCC
Confidence 9999999999999999887654
No 126
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=6.9e-23 Score=190.52 Aligned_cols=159 Identities=19% Similarity=0.247 Sum_probs=117.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCc----------ccchhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT----------EQFASMR 169 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~----------~~~~~~~ 169 (286)
...++|+++|++|||||||+|++++... ...+++++.+.....+..++.. +++|||||+ +.|..++
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHH
Confidence 3569999999999999999999998765 5667777777777788888877 889999998 4555554
Q ss_pred h-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH-HHHHHHh----cCCC
Q psy10504 170 D-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD-GQALAQS----WGCP 243 (286)
Q Consensus 170 ~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~ 243 (286)
. .+++.+|++++|+|++++.+.++. .|...+.. .++|+++|+||+|+.+. +.....+ .+.+... .+++
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~l~~~~~~~ 324 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDK-DESTMKEFEENIRDHFQFLDYAP 324 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCC-CTTHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCc-chHHHHHHHHHHHHhcccCCCCC
Confidence 4 478899999999999999888876 35555543 37899999999999733 2222222 2223333 3589
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
++++||++|.|++++|+.+.+.+..
T Consensus 325 ~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 325 ILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred EEEEecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 127
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=4e-22 Score=186.36 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=119.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCC----------cccchhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG----------TEQFASMR 169 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG----------~~~~~~~~ 169 (286)
...++|+++|++|+|||||+++|.+.. ....+++++.+.....+..++.. +++||||| ++.|..++
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEE--EEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCce--EEEEECCCCCcCcccchHHHHHHHHH
Confidence 457999999999999999999999754 45667777777777778888876 88999999 67777766
Q ss_pred hh-cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc-----CCC
Q psy10504 170 DL-YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-----GCP 243 (286)
Q Consensus 170 ~~-~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----~~~ 243 (286)
.. +++.+|++++|+|++++.+.++ ..|...+.. .++|+++|+||+|+.+ .+.....+.....+.. +++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~----~~~~~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE----AGKAVVIVVNKWDAVD-KDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCEEEEEEECGGGSC-CCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEEChhcCC-CchHHHHHHHHHHHHhcccCCCCC
Confidence 54 7899999999999998655433 334444443 3789999999999973 3334444444444433 489
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
++++||++|.|++++|+++.+.+...
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999877543
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.87 E-value=6.4e-21 Score=175.53 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=119.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCcc--CCCc-c--------ceEEE-----EEEE---CCeEEEEEEEeCCCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKY--DPTI-E--------DFYRK-----EIEV---DKAPCVLEILDTAGT 162 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~--~~t~-~--------~~~~~-----~~~~---~~~~~~l~l~DtpG~ 162 (286)
.+.++|+++|++|+|||||+++|.+....... ..+. . ..... .... ......+.+||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 45789999999999999999999874332210 0000 0 00000 0000 112256999999999
Q ss_pred ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--
Q psy10504 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW-- 240 (286)
Q Consensus 163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-- 240 (286)
++|...+..++..+|++++|+|++++.+......++..+.... ..|+++|+||+|+.+.... ....+.+.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~--~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEA--LSQYRQIKQFTKG 160 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHH--HHHHHHHHHHHHh
Confidence 9999999999999999999999999876777777776665532 3589999999999732111 11112222222
Q ss_pred ----CCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 241 ----GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 241 ----~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
+++++++||++|.|+++++++|.+.++......+.+.+
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~ 202 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPV 202 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCE
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcE
Confidence 47899999999999999999999988765554444443
No 129
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=4e-21 Score=184.06 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=120.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----c---------CCCccceEEEEEEE---CCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----Y---------DPTIEDFYRKEIEV---DKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----~---------~~t~~~~~~~~~~~---~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|++++|||||+++|+.. .+... . .+.+.......+.+ ++..+.+++||||||.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4578999999999999999999862 22111 0 01111111122222 4556789999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC- 242 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 242 (286)
+|...+..+++.+|++++|+|++++.+.+....|...... ++|+++|+||+|+.+.. .....+.+...++.
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~-----~ipiIvViNKiDl~~a~---~~~v~~ei~~~lg~~ 154 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM-----DLEVVPVLNKIDLPAAD---PERVAEEIEDIVGID 154 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC---HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC-----CCCEEEeeeccCccccc---HHHHHHHHHHHhCCC
Confidence 9999999999999999999999999888888887766543 78999999999997332 23334556666665
Q ss_pred --CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 243 --PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 243 --~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
+++++||++|.|+++++++|.+.++......+.++
T Consensus 155 ~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~ 191 (599)
T 3cb4_D 155 ATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPL 191 (599)
T ss_dssp CTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred cceEEEeecccCCCchhHHHHHhhcCCCccccccCCc
Confidence 49999999999999999999999987655444443
No 130
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=1.8e-22 Score=169.86 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=104.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC---
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN--- 175 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~--- 175 (286)
.+.++|+++|++|+|||||+++|.+..+.. .+.++++... ..+.+.+|||||++.+...+..+++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 81 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAK 81 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhccc
Confidence 456899999999999999999999987644 2333332111 33348899999999999988888887
Q ss_pred -ccEEEEEEECC-CcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHHhcCCCE
Q psy10504 176 -GQGFVVVYSLT-NHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLASHQREVP------TLDGQALAQSWGCPF 244 (286)
Q Consensus 176 -~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~ 244 (286)
+|++++|+|++ ++.+++....|+..+.... ...++|+++|+||+|+.+. +... ..+...++...+.++
T Consensus 82 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 82 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA-RPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC-CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc-CCHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999 8889999998888776543 3358999999999999733 3222 334555666667788
Q ss_pred EEEeCCCCCc
Q psy10504 245 IEASAKNKTN 254 (286)
Q Consensus 245 ~~vSa~~~~g 254 (286)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999998764
No 131
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.86 E-value=4.8e-21 Score=183.31 Aligned_cols=167 Identities=18% Similarity=0.204 Sum_probs=121.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCcc--------------CCCccc--eEEEEEEE-CCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEKY--------------DPTIED--FYRKEIEV-DKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~~--------------~~t~~~--~~~~~~~~-~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|++++|||||+++|+.. .+.... .+.+.. .....+.. ++..+.+++||||||.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 5679999999999999999999862 221110 000111 11122222 4556789999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC- 242 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 242 (286)
+|...+.++++.+|++++|+|++++.+.+....|...... ++|+++|+||+|+.... .....+.+...++.
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~-----~ipiIvviNKiDl~~a~---~~~v~~el~~~lg~~ 156 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQ-----DLVIIPVINKIDLPSAD---VDRVKKQIEEVLGLD 156 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHT-----TCEEEEEEECTTSTTCC---HHHHHHHHHHTSCCC
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHC-----CCCEEEEEeccCccccC---HHHHHHHHHHhhCCC
Confidence 9999999999999999999999999988888887766543 78999999999997332 22334556666675
Q ss_pred --CEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 243 --PFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 243 --~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
+++++||++|.|+++++++|.+.++......+.++
T Consensus 157 ~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~~~~~pl 193 (600)
T 2ywe_A 157 PEEAILASAKEGIGIEEILEAIVNRIPPPKGDPQKPL 193 (600)
T ss_dssp GGGCEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred cccEEEEEeecCCCchHHHHHHHHhcccccccccCCc
Confidence 48999999999999999999999987654444443
No 132
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.86 E-value=1.9e-22 Score=186.06 Aligned_cols=159 Identities=18% Similarity=0.201 Sum_probs=118.1
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh-------hh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------RD 170 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------~~ 170 (286)
+....++|+++|++|+|||||+++|.+..+ .....+++.+.....+.+.+.. .+.+|||||++++..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 344679999999999999999999998765 3556666667777778777652 4899999999987765 34
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 250 (286)
.+++.+|++++|+|+.. .+....|+..+... ++|+++|+||+|+.+.... ...+.+.+.++++++++||+
T Consensus 109 ~~l~~aD~vllVvD~~~---~~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~---~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 109 RVFYRADCGILVTDSAP---TPYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp HHHTSCSEEEEECSSSC---CHHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT---HHHHHSSCCTTCCCCCCSSC
T ss_pred HHHhcCCEEEEEEeCCC---hHHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH---HHHHHHHHHcCCCEEEEECC
Confidence 47889999999999932 23345566666653 7899999999999743332 45566667778999999999
Q ss_pred CCCcHHHHHHHHHHHhhcC
Q psy10504 251 NKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~~ 269 (286)
+|.|++++|++|.+.+++.
T Consensus 179 tg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CTTSTTTHHHHHHHHSCCC
T ss_pred CCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999665
No 133
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.86 E-value=1.6e-21 Score=182.81 Aligned_cols=151 Identities=21% Similarity=0.243 Sum_probs=119.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcc-cchh--------hhhhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-QFAS--------MRDLY 172 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-~~~~--------~~~~~ 172 (286)
.++|+++|.+|+|||||+|+|.+.. ++..+++|+.+.....+.+++.. +.+|||||+. ++.. ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~--~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGIL--FRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEE--EEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeE--EEEEECCCccccchhhHHHHHHHHHHHH
Confidence 4899999999999999999999864 46778888888888888888876 8899999988 6542 23467
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.++++..- +..+ .++|+++|+||+|+.+. ....+...+. ..+.+++++||++|
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~i-l~~l------~~~piivV~NK~DL~~~---~~~~~~~~~~-~~~~~~i~iSAktg 389 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRKI-LERI------KNKRYLVVINKVDVVEK---INEEEIKNKL-GTDRHMVKISALKG 389 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHHH-HHHH------TTSSEEEEEEECSSCCC---CCHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred hhcccEEEEEecCCCCCCHHHHHH-HHHh------cCCCEEEEEECcccccc---cCHHHHHHHh-cCCCcEEEEECCCC
Confidence 889999999999999887766432 2222 27899999999999732 2333333332 23478999999999
Q ss_pred CcHHHHHHHHHHHhh
Q psy10504 253 TNVNEMFAEIVREMN 267 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~ 267 (286)
.|+++++++|.+.+.
T Consensus 390 ~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 390 EGLEKLEESIYRETQ 404 (482)
T ss_dssp CCHHHHHHHHHHHTH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999765
No 134
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.86 E-value=1.8e-23 Score=197.67 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=116.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEE-CCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEV-DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
+.++|+++|++|+|||||+++|.+..+...+.++++ +.....+.. ++.. ++|||||||+.|..++..+++.+|+++
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~--i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEK--ITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSC--CBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCE--EEEEECCChHHHHHHHHHHHccCCEEE
Confidence 568999999999999999999998766544444433 222333333 2333 889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHH---HHhc--CCCEEEEeCCCCCcH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQAL---AQSW--GCPFIEASAKNKTNV 255 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~---~~~~--~~~~~~vSa~~~~gv 255 (286)
+|+|++++...+....|... . ..++|+++|+||+|+.+........+.... ...+ .++++++||++|.|+
T Consensus 81 LVVDa~dg~~~qt~e~l~~~-~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI 155 (537)
T 3izy_P 81 LVVAADDGVMKQTVESIQHA-K----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENM 155 (537)
T ss_dssp EECBSSSCCCHHHHHHHHHH-H----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSS
T ss_pred EEEECCCCccHHHHHHHHHH-H----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCc
Confidence 99999998766555443222 2 237899999999999743332222222211 1112 257999999999999
Q ss_pred HHHHHHHHHHhhcC
Q psy10504 256 NEMFAEIVREMNFN 269 (286)
Q Consensus 256 ~~l~~~i~~~i~~~ 269 (286)
++++++|...+...
T Consensus 156 ~eLle~I~~l~~~~ 169 (537)
T 3izy_P 156 MALAEATIALAEML 169 (537)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred hhHHHHHHHhhhcc
Confidence 99999999987543
No 135
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.86 E-value=4.5e-21 Score=178.43 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=108.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCccc---------chhhhhhcc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ---------FASMRDLYI 173 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~---------~~~~~~~~~ 173 (286)
++|+++|.+|||||||+|+|++.. .+...++++.+.....+.+++.. +++|||||++. +...+..++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT--FKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE--EEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE--EEEEECCCccccccchHHHHHHHHHHHHH
Confidence 489999999999999999999876 35677777778888888888887 78999999764 234566789
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHhcCC-CEEEEeCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQSWGC-PFIEASAKN 251 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~~~~-~~~~vSa~~ 251 (286)
+++|++++|+|++++.+..+. .+...+.. .++|+++|+||+|+.+. . ..+. ..+. ..+. +++++||++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~-~i~~~l~~----~~~p~ilv~NK~D~~~~---~-~~~~~~~~~-~lg~~~~~~iSA~~ 149 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDE-SLADFLRK----STVDTILVANKAENLRE---F-EREVKPELY-SLGFGEPIPVSAEH 149 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHH-HHHHHHHH----HTCCEEEEEESCCSHHH---H-HHHTHHHHG-GGSSCSCEECBTTT
T ss_pred HhCCEEEEEEECCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc---c-HHHHHHHHH-hcCCCCEEEEeccC
Confidence 999999999999987655432 11122222 27899999999998511 0 1112 2232 4565 789999999
Q ss_pred CCcHHHHHHHHHHHhhcCC
Q psy10504 252 KTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~ 270 (286)
|.|++++++++.+.+++..
T Consensus 150 g~gv~~L~~~i~~~l~~~~ 168 (439)
T 1mky_A 150 NINLDTMLETIIKKLEEKG 168 (439)
T ss_dssp TBSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhccccc
Confidence 9999999999999987543
No 136
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.86 E-value=3e-21 Score=181.38 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=113.1
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCc-------CCCcc-CCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-------FMEKY-DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDL 171 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~~-~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~ 171 (286)
..++.++|+++|++++|||||+++|.+.. +.... .+.+.+.....+.+++.. +++||||||++|...+..
T Consensus 15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~--i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYR--ITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEE--EEECCCSSHHHHHHHHHH
T ss_pred hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEE--EEEEECCChHHHHHHHHH
Confidence 34678999999999999999999999865 11122 222223333345556544 899999999999999999
Q ss_pred cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC-CCCHHHHHHHHHhc----CCCEEE
Q psy10504 172 YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR-EVPTLDGQALAQSW----GCPFIE 246 (286)
Q Consensus 172 ~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-~~~~~~~~~~~~~~----~~~~~~ 246 (286)
++..+|++++|+|++++...+.... +..+.. .++|+++|+||+|+.+... .....+...+.... +.++++
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 167 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQTGEH-MLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIP 167 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEE
T ss_pred HHhhCCEEEEEEecCCCccHHHHHH-HHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEE
Confidence 9999999999999998543333322 222222 2789999999999973111 11122333444444 578999
Q ss_pred EeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 247 ASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 247 vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
+||++|+|+++++++|.+.++..
T Consensus 168 vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 168 ISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHHhhcCc
Confidence 99999999999999999987643
No 137
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=3e-20 Score=171.33 Aligned_cols=172 Identities=17% Similarity=0.175 Sum_probs=107.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc---CCCccCC--Ccc-ceEEEEEEE-------------C--C----eEEEEEEE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC---FMEKYDP--TIE-DFYRKEIEV-------------D--K----APCVLEIL 157 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~---~~~~~~~--t~~-~~~~~~~~~-------------~--~----~~~~l~l~ 157 (286)
..++|+++|++++|||||+++|.+.. +.....+ |+. .+....+.. + + ....+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 56899999999999999999998532 2222223 221 111111111 1 1 12569999
Q ss_pred eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHH
Q psy10504 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQAL 236 (286)
Q Consensus 158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~ 236 (286)
|||||++|...+...+..+|++++|+|++++.........+..+... ...|+++|+||+|+.+.... ....+...+
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~ 163 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKEF 163 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999764222222222222221 13589999999999743322 223344444
Q ss_pred HHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCCc
Q psy10504 237 AQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277 (286)
Q Consensus 237 ~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~~ 277 (286)
.+. .+++++++||++|+|+++++++|.+.++......+.+.
T Consensus 164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~~~~~~~~ 207 (408)
T 1s0u_A 164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPKRDPDATP 207 (408)
T ss_dssp HTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCCCCTTSCC
T ss_pred HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCcccCCCCe
Confidence 443 25789999999999999999999998876544444443
No 138
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.85 E-value=1.7e-21 Score=175.16 Aligned_cols=160 Identities=20% Similarity=0.274 Sum_probs=123.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc----cchhhhhhccc---Ccc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE----QFASMRDLYIK---NGQ 177 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~----~~~~~~~~~~~---~~d 177 (286)
+|+++|.+|||||||++++..... ...++.++.+.....+.+++. ..+.+|||||+. ++..+...+++ .++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998653 345555655555556666652 238999999964 34445555554 499
Q ss_pred EEEEEEECCC---cccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCC
Q psy10504 178 GFVVVYSLTN---HHTFQDIKQMKELITRVKG-SERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKN 251 (286)
Q Consensus 178 ~vilv~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~ 251 (286)
++++|+|+++ ..+++++..|...+..+.. ..++|+++|+||+|+... .+..+.+.+.+. .+++++||++
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~-----~e~~~~l~~~l~~~~~v~~iSA~t 313 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA-----AENLEAFKEKLTDDYPVFPISAVT 313 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH-----HHHHHHHHHHCCSCCCBCCCSSCC
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC-----HHHHHHHHHHhhcCCCEEEEECCC
Confidence 9999999998 7888999988888887532 247999999999999721 134566666666 6899999999
Q ss_pred CCcHHHHHHHHHHHhhcCCC
Q psy10504 252 KTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~~~~ 271 (286)
+.|+++++++|.+.+.+.+.
T Consensus 314 g~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 314 REGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSTTHHHHHHHHHHHTSCCC
T ss_pred CcCHHHHHHHHHHHHhhCcc
Confidence 99999999999999987654
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=3.8e-20 Score=167.75 Aligned_cols=159 Identities=20% Similarity=0.204 Sum_probs=119.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh---------hhhhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS---------MRDLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~---------~~~~~ 172 (286)
..++|+++|.+|||||||+++|.+.... ...+.++.+.....+..++.. +.+|||||+..+.. ....+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFR--YQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEE--EEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCce--EEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 5689999999999999999999987653 233444445555555555544 89999999864321 11234
Q ss_pred ccCccEEEEEEECCCcc--cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC
Q psy10504 173 IKNGQGFVVVYSLTNHH--TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~ 250 (286)
...+|++++|+|++++. +++....|+..+..... ++|+++|+||+|+.+ ... ..+........+++++++||+
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~-~~~--~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVAD-EEN--IKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCC-HHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCC-hHH--HHHHHHHHHhcCCCeEEEeCC
Confidence 55799999999999876 67888888888776432 789999999999972 221 233445556678999999999
Q ss_pred CCCcHHHHHHHHHHHhhc
Q psy10504 251 NKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~ 268 (286)
+|+|+++++++|.+.+..
T Consensus 319 ~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999998754
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=1.4e-20 Score=166.65 Aligned_cols=160 Identities=18% Similarity=0.126 Sum_probs=114.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCcc-c--------chhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE-Q--------FASMRD 170 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-~--------~~~~~~ 170 (286)
.+..+|+++|++|||||||++++++..+. ...++++.+.....+..++.. +.+|||||+. . +.....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~--i~~iDTpG~~~~~~~~l~~~~~~~~~ 83 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQ--AIYVDTPGLHMEEKRAINRLMNKAAS 83 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEE--EEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCee--EEEEECcCCCccchhhHHHHHHHHHH
Confidence 35678999999999999999999997653 344445555555555555555 8899999987 2 333456
Q ss_pred hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASA 249 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa 249 (286)
.+++.+|++++|+|+++ -+.. ..++..... ..+.|+++++||+|+.. .+.........+.+.++. .++++||
T Consensus 84 ~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~---~~~~P~ilvlNK~D~~~-~~~~~~~~l~~l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 84 SSIGDVELVIFVVEGTR-WTPD--DEMVLNKLR---EGKAPVILAVNKVDNVQ-EKADLLPHLQFLASQMNFLDIVPISA 156 (301)
T ss_dssp SCCCCEEEEEEEEETTC-CCHH--HHHHHHHHH---SSSSCEEEEEESTTTCC-CHHHHHHHHHHHHTTSCCSEEEECCT
T ss_pred HHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHH---hcCCCEEEEEECcccCc-cHHHHHHHHHHHHHhcCcCceEEEEC
Confidence 77899999999999987 3322 223322222 23789999999999973 122122334445555665 6899999
Q ss_pred CCCCcHHHHHHHHHHHhhcCC
Q psy10504 250 KNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 250 ~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+++.|++++++.|.+.+++.+
T Consensus 157 ~~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp TTTTTHHHHHHHHHTTCCBCC
T ss_pred CCCCCHHHHHHHHHHhCCcCC
Confidence 999999999999999887654
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.85 E-value=2.9e-20 Score=172.85 Aligned_cols=157 Identities=20% Similarity=0.173 Sum_probs=103.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEEC
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVD 148 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~ 148 (286)
....++|+++|++|+|||||+++|+.. .+... ..+.+.+.....+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 446799999999999999999999542 11111 1122223334445555
Q ss_pred CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCccc---HHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT---FQDIKQMKELITRVKGSERVP-ILLVANKLDLASH 224 (286)
Q Consensus 149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~ 224 (286)
+. .+.|||||||++|...+..+++.+|++++|+|++++.. ++...++...+..... .++| +++|+||+|+...
T Consensus 94 ~~--~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 94 KK--HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred Ce--EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCCCeEEEEeecCCCccc
Confidence 54 49999999999999999999999999999999998642 1111122222222111 2667 9999999999622
Q ss_pred CC-----CCCHHHHHHHHHhcC------CCEEEEeCCCCCcHHHHHH
Q psy10504 225 QR-----EVPTLDGQALAQSWG------CPFIEASAKNKTNVNEMFA 260 (286)
Q Consensus 225 ~~-----~~~~~~~~~~~~~~~------~~~~~vSa~~~~gv~~l~~ 260 (286)
+. .....+...+.+..+ ++++++||++|.|++++.+
T Consensus 171 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 11 111122333343443 5799999999999999655
No 142
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.84 E-value=3.4e-21 Score=179.09 Aligned_cols=154 Identities=17% Similarity=0.215 Sum_probs=104.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc--------cchhhhhhcc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE--------QFASMRDLYI 173 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~--------~~~~~~~~~~ 173 (286)
.++|+++|++|||||||+|+|.+..+ ....++++.+.....+.+++.. +.+|||||++ .+...+..++
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSC--CEEEC---------CHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCce--EEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 36899999999999999999998654 4555666666666666666665 8999999986 5666778889
Q ss_pred cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCC-CEEEEeCCCC
Q psy10504 174 KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGC-PFIEASAKNK 252 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~vSa~~~ 252 (286)
+.+|++++|+|++++.+..+. ++..+.. ..++|+++|+||+|+........ .+. ..+. +++++||++|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d~--~~~~~l~---~~~~pvilv~NK~D~~~~~~~~~-----~~~-~lg~~~~~~iSA~~g 149 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAADE--EVAKILY---RTKKPVVLAVNKLDNTEMRANIY-----DFY-SLGFGEPYPISGTHG 149 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHHH--HHHHHHT---TCCSCEEEEEECCCC-----CCC-----SSG-GGSSCCCEECBTTTT
T ss_pred HhCCEEEEEEeCCCCCCHHHH--HHHHHHH---HcCCCEEEEEECccCccchhhHH-----HHH-HcCCCCeEEEeCcCC
Confidence 999999999999998766542 2222222 24889999999999873221111 111 2344 7899999999
Q ss_pred CcHHHHHHHHHHHhhcCC
Q psy10504 253 TNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~ 270 (286)
.|++++++++.+.+++.+
T Consensus 150 ~gv~~L~~~i~~~l~~~~ 167 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIP 167 (436)
T ss_dssp BTHHHHHHHHHHTGGGCC
T ss_pred CChHHHHHHHHHhcCccc
Confidence 999999999999997643
No 143
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.84 E-value=1.2e-20 Score=173.69 Aligned_cols=170 Identities=18% Similarity=0.177 Sum_probs=118.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--------cCCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--------CFMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
...++|+++|++|+|||||+++|.+. .+... ..+.+.+.....+...+. .+.+||||||+
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~--~~~iiDtpG~~ 86 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR--HYSHVDCPGHA 86 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSC--EEEEEECCCSG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCe--EEEEEECCChH
Confidence 35699999999999999999999873 11110 111222333333333344 48999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCCC--CHHHHHHHHHhc
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQREV--PTLDGQALAQSW 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~~--~~~~~~~~~~~~ 240 (286)
+|...+..+++.+|++++|+|++++...+. ..++..+... ++| +++|+||+|+.++.... ...+...+.+..
T Consensus 87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~----~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~ 161 (405)
T 2c78_A 87 DYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV----GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQY 161 (405)
T ss_dssp GGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT----TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998765443 4444444432 678 89999999997311111 112344455555
Q ss_pred C-----CCEEEEeCCCCCc------------------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 241 G-----CPFIEASAKNKTN------------------VNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 241 ~-----~~~~~vSa~~~~g------------------v~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
+ ++++++||++|.| ++++++.|.+.++......+.+++
T Consensus 162 ~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~ 222 (405)
T 2c78_A 162 EFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFL 222 (405)
T ss_dssp TSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCE
T ss_pred cccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcE
Confidence 4 6899999999987 889999999888765544444443
No 144
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.84 E-value=1.8e-22 Score=189.35 Aligned_cols=157 Identities=24% Similarity=0.322 Sum_probs=111.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFV 180 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vi 180 (286)
++.++|+++|++++|||||+++|.+..+...+.++++ +.....+..++.. ++|||||||+.|..++.+++..+|+++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~--i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGM--ITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSC--CCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEE--EEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 3668999999999999999999998665544433322 2222334445554 889999999999999999999999999
Q ss_pred EEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHH--HHHHHHHhcC--CCEEEEeCCCCCcH
Q psy10504 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTL--DGQALAQSWG--CPFIEASAKNKTNV 255 (286)
Q Consensus 181 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~--~~~~~~~~~~--~~~~~vSa~~~~gv 255 (286)
+|+|++++...+....|. .+.. .++|+++++||+|+.+.... +... +...+.+.++ ++++++||++|.|+
T Consensus 80 LVVda~~g~~~qT~e~l~-~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQ-HAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EEEETTTBSCTTTHHHHH-HHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred EEeecccCccHHHHHHHH-HHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 999999865444333332 2222 37899999999999743211 1000 0011122233 68999999999999
Q ss_pred HHHHHHHHHH
Q psy10504 256 NEMFAEIVRE 265 (286)
Q Consensus 256 ~~l~~~i~~~ 265 (286)
++++++|...
T Consensus 155 ~eLle~I~~~ 164 (501)
T 1zo1_I 155 DELLDAILLQ 164 (501)
T ss_dssp TTHHHHTTTT
T ss_pred chhhhhhhhh
Confidence 9999999864
No 145
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=7e-21 Score=177.62 Aligned_cols=154 Identities=20% Similarity=0.290 Sum_probs=109.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc--CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh--------hhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC--FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR--------DLY 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~--------~~~ 172 (286)
..++|+++|++|+|||||+|+|.+.. +....++++.+.....+.+++.. +.+|||||+.++.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~--v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEE--EEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEE--EEEEECCccccchhHHHHHHHHHHhhh
Confidence 46899999999999999999999854 35666777777777778888877 7899999987655432 336
Q ss_pred ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCC
Q psy10504 173 IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNK 252 (286)
Q Consensus 173 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~ 252 (286)
++.+|++++|+|++++.+.+. ..|+..+. +.|+++|+||+|+.+.. .... ...+ ..+.+++++||++|
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~------~~piivV~NK~Dl~~~~-~~~~--~~~~--~~~~~~i~iSAktg 368 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQVK------HRPLILVMNKIDLVEKQ-LITS--LEYP--ENITQIVHTAAAQK 368 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHHT------TSCEEEEEECTTSSCGG-GSTT--CCCC--TTCCCEEEEBTTTT
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhcc------CCcEEEEEECCCCCcch-hhHH--HHHh--ccCCcEEEEECCCC
Confidence 788999999999999876655 33333332 46999999999997322 2110 0000 13578999999999
Q ss_pred CcHHHHHHHHHHHhhcCC
Q psy10504 253 TNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 253 ~gv~~l~~~i~~~i~~~~ 270 (286)
.|+++++++|.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999987654
No 146
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=4.1e-20 Score=171.96 Aligned_cols=158 Identities=25% Similarity=0.243 Sum_probs=110.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh-----------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR----------- 169 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~----------- 169 (286)
..++|+++|++|||||||+|++.+... ....++++.+.....+.+++.. +.+|||||+.++....
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~--~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRK--YVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEE--EEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEE--EEEEECCCCccccccchhhHHHHHHHH
Confidence 568999999999999999999998754 5667777777777888888886 7899999985433221
Q ss_pred -hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH-HHHHHh----cCCC
Q psy10504 170 -DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG-QALAQS----WGCP 243 (286)
Q Consensus 170 -~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~-~~~~~~----~~~~ 243 (286)
..+++.+|++++|+|++++.+.++.. +...+.. .++|+++|+||+|+.+. +.....+. +.+... .+.+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~-i~~~l~~----~~~~~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQR-MAGLMER----RGRASVVVFNKWDLVVH-REKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHH-HHHHHHH----TTCEEEEEEECGGGSTT-GGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECccCCCc-hhhHHHHHHHHHHHHhccCCCCc
Confidence 23567899999999999877766532 2233322 37899999999999732 22222222 222232 3478
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 244 FIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
++++||++|.|++++|+.+.+.+..
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999987654
No 147
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.83 E-value=5.5e-20 Score=169.66 Aligned_cols=171 Identities=16% Similarity=0.151 Sum_probs=112.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC---cCCCccCCC-ccceE--EEEEEE-------------C--C----eEEEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG---CFMEKYDPT-IEDFY--RKEIEV-------------D--K----APCVLEI 156 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~---~~~~~~~~t-~~~~~--~~~~~~-------------~--~----~~~~l~l 156 (286)
...++|+++|++++|||||+++|.+. .+.....+. +.+.. ...+.. + + ....+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999853 222232231 22211 111211 1 1 1256999
Q ss_pred EeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHH
Q psy10504 157 LDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQ 234 (286)
Q Consensus 157 ~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~ 234 (286)
||||||++|...+...+..+|++++|+|++++. ..+.. ..+..+... . ..|+++|+||+|+.+.... ....+..
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~-e~l~~~~~~-~--~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTR-EHLMALQII-G--QKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHH-HHHHHHHHH-T--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHH-HHHHHHHHc-C--CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 999999999988888899999999999999764 22222 222222222 1 3589999999999732210 1112233
Q ss_pred HHHHh---cCCCEEEEeCCCCCcHHHHHHHHHHHhhcCCCCcCCC
Q psy10504 235 ALAQS---WGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276 (286)
Q Consensus 235 ~~~~~---~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~~~~~~~ 276 (286)
.+.+. .+++++++||++|.|+++++++|.+.++......+.+
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~~~~~~~ 208 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPKRDPNKP 208 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCccccCCC
Confidence 33332 3578999999999999999999999887654443333
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.83 E-value=1.6e-20 Score=172.52 Aligned_cols=169 Identities=17% Similarity=0.165 Sum_probs=115.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCc-------CCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGC-------FMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
..++|+++|++++|||||+++|.+.. +... ..+.+.+. ....+......+.+||||||++|
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~--~~~~~~~~~~~~~iiDtpG~~~f 79 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINA--AHVEYSTAARHYAHTDCPGHADY 79 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEEC--EEEEEECSSCEEEEEECSSHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEe--eeEEeccCCeEEEEEECCChHHH
Confidence 46899999999999999999998731 1100 11111111 12223333345899999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhcC-
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSWG- 241 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~- 241 (286)
...+..+++.+|++|+|+|++++...+....| ..+.. .++| +++++||+|+.++... ....+...+.+..+
T Consensus 80 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 154 (397)
T 1d2e_A 80 VKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGY 154 (397)
T ss_dssp HHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99899999999999999999997655544443 33332 2778 7899999999731111 11124445555555
Q ss_pred ----CCEEEEeCCCCCc----------HHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 242 ----CPFIEASAKNKTN----------VNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 242 ----~~~~~vSa~~~~g----------v~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
++++++||++|.| ++++++.|.+.++......+.+++
T Consensus 155 ~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~ 205 (397)
T 1d2e_A 155 KGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPTRDLEKPFL 205 (397)
T ss_dssp CTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCCCCTTSCCE
T ss_pred CcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCCCCCCCcEE
Confidence 6899999999764 999999999988765444444443
No 149
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.83 E-value=7.8e-20 Score=173.18 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=85.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC------------------cCCC-----ccCCCccceEEEEEEECCeEEEEEEEeC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG------------------CFME-----KYDPTIEDFYRKEIEVDKAPCVLEILDT 159 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~------------------~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt 159 (286)
+..+|+|+|++|+|||||+++|+.. .+.. ...+.+.......+...+.. +++|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~--i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYL--INLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEE--EEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEE--EEEEEC
Confidence 4679999999999999999999621 0000 01122223334555666655 899999
Q ss_pred CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
|||.+|...+..+++.+|++|+|+|++++.+.+....|... .. .++|+++|+||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~-~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC-RL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH-HT----TTCCEEEEEECTTSCC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH-HH----cCCCEEEEEeCCCCcc
Confidence 99999999999999999999999999998877776655432 22 2789999999999963
No 150
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.83 E-value=6.3e-20 Score=175.88 Aligned_cols=161 Identities=20% Similarity=0.214 Sum_probs=107.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceEEEEEEEC-----------C-----eEEEEEEEeCCCccc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVD-----------K-----APCVLEILDTAGTEQ 164 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~-----------~-----~~~~l~l~DtpG~~~ 164 (286)
++.++|+++|++++|||||+++|++..+....++.++ +......... + ....++|||||||++
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 3568999999999999999999998655443321111 1111111110 0 111389999999999
Q ss_pred chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC------------CHH-
Q psy10504 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV------------PTL- 231 (286)
Q Consensus 165 ~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~------------~~~- 231 (286)
|..++.++++.+|++|+|+|++++...+....|. .+.. .++|+++++||+|+.+..... ...
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 9999999999999999999999954444333332 2222 378999999999996321110 000
Q ss_pred ---------H-HHHHHHh--------------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 232 ---------D-GQALAQS--------------WGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 232 ---------~-~~~~~~~--------------~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
+ ...+.+. ..++++++||++|.|+++++++|...++
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 0111111 1147999999999999999999998775
No 151
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.82 E-value=2.4e-20 Score=168.32 Aligned_cols=126 Identities=14% Similarity=0.120 Sum_probs=101.5
Q ss_pred EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504 143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPI 212 (286)
Q Consensus 143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi 212 (286)
..+.+++ +.+++|||+||+.++.+|..++++++++|+|+|+++ ..++++...|+..+.......++|+
T Consensus 186 ~~~~~~~--~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 186 THFTFKD--LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEeeCC--eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 3455554 459999999999999999999999999999999999 5678888888888876544468999
Q ss_pred EEEEeCCCCCCCC--------------CCCCHHHHHHHHH-----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 213 LLVANKLDLASHQ--------------REVPTLDGQALAQ-----------SWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 213 ivv~nK~Dl~~~~--------------~~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
++++||+|+.... ...+..+...++. ..++.+++|||+++.|++++|+++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985211 1245666766665 24577899999999999999999999986
Q ss_pred cCC
Q psy10504 268 FNP 270 (286)
Q Consensus 268 ~~~ 270 (286)
...
T Consensus 344 ~~~ 346 (353)
T 1cip_A 344 KNN 346 (353)
T ss_dssp HHC
T ss_pred HHH
Confidence 543
No 152
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=6.2e-20 Score=158.86 Aligned_cols=165 Identities=15% Similarity=0.152 Sum_probs=109.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCc-CCCccCC--CccceEEEEEEECCeEEEEEEEeCCCcccchhh--------
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDP--TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------- 168 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~--t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------- 168 (286)
...+.++|+|+|++|||||||+++|++.. +.....+ ++.+.....+..++.. +.+|||||+..+...
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~iiDTpG~~~~~~~~~~~~~~i 95 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNRE--IVIIDTPDMFSWKDHCEALYKEV 95 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEE--EEEEECCGGGGSSCCCHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCE--EEEEECcCCCCCCCCHHHHHHHH
Confidence 34467999999999999999999999876 4444433 3445556667777766 889999998765322
Q ss_pred ---hhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEe-CCCCCCCCCCCCH-------HHHHHH
Q psy10504 169 ---RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVAN-KLDLASHQREVPT-------LDGQAL 236 (286)
Q Consensus 169 ---~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~n-K~Dl~~~~~~~~~-------~~~~~~ 236 (286)
...+++.+|++++|+|+++.... ...++..+..... ....|.++|+| |+|+.+ .. ... .+...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~--~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~-~~-~~~~i~~~~~~~~~~~ 171 (260)
T 2xtp_A 96 QRCYLLSAPGPHVLLLVTQLGRYTSQ--DQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG-GS-LMDYMHDSDNKALSKL 171 (260)
T ss_dssp HHHHHHHTTCCSEEEEEEETTCCCHH--HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT-CC-HHHHHHHCCCHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEEeCCCCCHH--HHHHHHHHHHHhCchhhccEEEEEEcccccCC-cc-HHHHHHhcchHHHHHH
Confidence 23367899999999999862211 1122233333211 11357777776 999973 21 111 223335
Q ss_pred HHhcCCCE-----EEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 237 AQSWGCPF-----IEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 237 ~~~~~~~~-----~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
....+..+ +++||++|.|++++|++|.+.+....
T Consensus 172 ~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 172 VAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 55555332 78999999999999999999987654
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=9.2e-20 Score=169.31 Aligned_cols=150 Identities=19% Similarity=0.189 Sum_probs=102.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCc--CCCc----------cCCCcc----------------------ceEEEEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGC--FMEK----------YDPTIE----------------------DFYRKEIEV 147 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~----------~~~t~~----------------------~~~~~~~~~ 147 (286)
...++|+++|++++|||||+++|+... +... ..++++ +.....+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 356899999999999999999998643 1111 112211 111122333
Q ss_pred CCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-cEEEEEeCCCCCCCCC
Q psy10504 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-PILLVANKLDLASHQR 226 (286)
Q Consensus 148 ~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piivv~nK~Dl~~~~~ 226 (286)
++ ..+.+||||||++|...+..++..+|++++|+|++++...+. ..++..+... ++ |+++|+||+|+.+..+
T Consensus 102 ~~--~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~~----~~~~iIvviNK~Dl~~~~~ 174 (434)
T 1zun_B 102 AK--RKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASLL----GIKHIVVAINKMDLNGFDE 174 (434)
T ss_dssp SS--EEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHHT----TCCEEEEEEECTTTTTSCH
T ss_pred CC--ceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc----CCCeEEEEEEcCcCCcccH
Confidence 33 458999999999999999999999999999999999764443 3333333331 44 6999999999973221
Q ss_pred C-C--CHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504 227 E-V--PTLDGQALAQSWG-----CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 227 ~-~--~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l 258 (286)
. . ...+...+.+.++ ++++++||++|.|++++
T Consensus 175 ~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 175 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1 1 1234455556666 67999999999999874
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.82 E-value=6.8e-20 Score=172.40 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=97.0
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCC------------------------------ccCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFME------------------------------KYDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~------------------------------~~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|++|+|||||+++|+.. .+.. ...+.+.+.....+..++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~ 110 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 110 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence 35799999999999999999999764 1111 111222233334444444
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHH---HHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI---KQMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~---~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
+.+.|||||||++|...+..+++.+|++|+|+|++++.+...+ .+....+.........|+++|+||+|+.+...
T Consensus 111 --~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~ 188 (483)
T 3p26_A 111 --ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 188 (483)
T ss_dssp --CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCH
T ss_pred --ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchH
Confidence 4489999999999999999999999999999999997543221 11111111111122347999999999973221
Q ss_pred CCC---HHHHHHHHHhc-----CCCEEEEeCCCCCcHHH
Q psy10504 227 EVP---TLDGQALAQSW-----GCPFIEASAKNKTNVNE 257 (286)
Q Consensus 227 ~~~---~~~~~~~~~~~-----~~~~~~vSa~~~~gv~~ 257 (286)
... ..+...+.... +++++++||++|.|+++
T Consensus 189 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 189 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 111 11222222333 36799999999999874
No 155
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=153.01 Aligned_cols=165 Identities=16% Similarity=0.201 Sum_probs=112.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcCCCccC---CCccceEEEEEEECCeEEEEEEEeCCCcc-----------cc
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYD---PTIEDFYRKEIEVDKAPCVLEILDTAGTE-----------QF 165 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~l~DtpG~~-----------~~ 165 (286)
.....++|+++|++|+|||||+++|++..+..... .++.+.....+.+++.. +.+|||||.. .+
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETE--LVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEE--EEEEECCSCC-----CHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCce--EEEEECCCccCCCCCHHHHHHHH
Confidence 34567999999999999999999999977654433 34445566677777776 8899999943 34
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCC------HHHHHHHHH
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVP------TLDGQALAQ 238 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~------~~~~~~~~~ 238 (286)
......+++.+|++++|+|+++... .. ..|+..+.... .....|+++|+||+|+.+. ..+. ....+.+.+
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~-~~-~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~-~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTE-EE-HKATEKILKMFGERARSFMILIFTRKDDLGD-TNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSS-HH-HHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------CHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCH-HH-HHHHHHHHHHhhhhccceEEEEEeCCccCCc-ccHHHHHHhchHHHHHHHH
Confidence 4455566788999999999976443 21 22333332211 1124699999999998633 2221 235677788
Q ss_pred hcCCCEEEEeCCCC-----CcHHHHHHHHHHHhhcC
Q psy10504 239 SWGCPFIEASAKNK-----TNVNEMFAEIVREMNFN 269 (286)
Q Consensus 239 ~~~~~~~~vSa~~~-----~gv~~l~~~i~~~i~~~ 269 (286)
..+..++.+++..+ .++.++++.+.+.+.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88888888887754 68999999998888664
No 156
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=2.2e-19 Score=162.89 Aligned_cols=164 Identities=18% Similarity=0.150 Sum_probs=111.5
Q ss_pred EE-EEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc---------cchhhhhhcc
Q psy10504 105 FK-VVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE---------QFASMRDLYI 173 (286)
Q Consensus 105 ~k-V~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~---------~~~~~~~~~~ 173 (286)
++ |+++|++|+|||||+|+|.+..+ ..+...++.+.....+.+++.. +.+|||+|.. .|.... ..+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~--v~l~DT~G~i~~lp~~lve~f~~tl-~~~ 255 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRK--IMLVDTVGFIRGIPPQIVDAFFVTL-SEA 255 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEE--EEEEECCCBCSSCCGGGHHHHHHHH-HGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEE--EEEEeCCCchhcCCHHHHHHHHHHH-HHH
Confidence 44 99999999999999999998765 3345566667777888888865 7899999962 233333 357
Q ss_pred cCccEEEEEEECCCcc--cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc---CCCEEEEe
Q psy10504 174 KNGQGFVVVYSLTNHH--TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW---GCPFIEAS 248 (286)
Q Consensus 174 ~~~d~vilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~---~~~~~~vS 248 (286)
..+|++++|+|++++. ..+....|...+... ...+.|+++|+||+|+.+............+...+ +.+++++|
T Consensus 256 ~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~S 334 (364)
T 2qtf_A 256 KYSDALILVIDSTFSENLLIETLQSSFEILREI-GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPIS 334 (364)
T ss_dssp GGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECB
T ss_pred HhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 8899999999999876 455555555555543 34578999999999997322100011122233444 24689999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCCCC
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNPEK 272 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~~~ 272 (286)
|+++.|+++++++|.+.+......
T Consensus 335 A~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 335 ALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHC--
T ss_pred CCCCcCHHHHHHHHHHHhcccCCC
Confidence 999999999999999988764433
No 157
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.80 E-value=2.7e-19 Score=159.42 Aligned_cols=128 Identities=13% Similarity=0.119 Sum_probs=100.5
Q ss_pred EEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCc
Q psy10504 142 RKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVP 211 (286)
Q Consensus 142 ~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~p 211 (286)
...+..++ +.+++|||+||+.++.+|..|+++++++|+|+|++ +..++++...|+..+.......++|
T Consensus 159 ~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~ 236 (327)
T 3ohm_A 159 EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSS 236 (327)
T ss_dssp EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCE
T ss_pred EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCce
Confidence 34455555 45999999999999999999999999999999665 5677888888888877655556899
Q ss_pred EEEEEeCCCCCCCC---------------CCCCHHHHHHHHH----------hcCCCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 212 ILLVANKLDLASHQ---------------REVPTLDGQALAQ----------SWGCPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 212 iivv~nK~Dl~~~~---------------~~~~~~~~~~~~~----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
+++++||+|+.+.. +..+.+++..+.. ..++.++++||+++.|++.+|+.+.+.+
T Consensus 237 iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 237 VILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp EEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 99999999985211 1355666666632 3446688999999999999999999998
Q ss_pred hcCCC
Q psy10504 267 NFNPE 271 (286)
Q Consensus 267 ~~~~~ 271 (286)
.+..-
T Consensus 317 l~~~l 321 (327)
T 3ohm_A 317 LQLNL 321 (327)
T ss_dssp HHTTC
T ss_pred HHHhH
Confidence 77553
No 158
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.80 E-value=7.7e-19 Score=151.19 Aligned_cols=165 Identities=15% Similarity=0.149 Sum_probs=110.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccC--CCccceEEEEEEECCeEEEEEEEeCCCc--------ccchhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME-KYD--PTIEDFYRKEIEVDKAPCVLEILDTAGT--------EQFASMRD 170 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~--~t~~~~~~~~~~~~~~~~~l~l~DtpG~--------~~~~~~~~ 170 (286)
...++|+++|.+|+|||||+|++++..+.. .+. +++..........++.. +.+|||||. +++.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCH--VEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEE--EEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcE--EEEEECCCCCCCCCCcHHHHHHHHH
Confidence 467999999999999999999999876543 222 24445556667777766 889999996 33332222
Q ss_pred hc----ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC--CCCCcEEEEEeCCCCCCCCCC-----CCHHHHHHHHHh
Q psy10504 171 LY----IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG--SERVPILLVANKLDLASHQRE-----VPTLDGQALAQS 239 (286)
Q Consensus 171 ~~----~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piivv~nK~Dl~~~~~~-----~~~~~~~~~~~~ 239 (286)
.+ .+.+|++++|+|+++. +.. -..++..+..... ..+.|+++++||+|+.+.... ......+.+.+.
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~-~~~-~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~ 174 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRF-TAQ-DQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAE 174 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBC-CHH-HHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCC-CHH-HHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHH
Confidence 23 3899999999999852 222 2223333333221 126799999999999732111 111345677778
Q ss_pred cCCCEEEEeCCC-----CCcHHHHHHHHHHHhhcCC
Q psy10504 240 WGCPFIEASAKN-----KTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 240 ~~~~~~~vSa~~-----~~gv~~l~~~i~~~i~~~~ 270 (286)
.+..++.+++.. +.|+++|++.|.+.+.++.
T Consensus 175 ~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 175 CGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp TTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 888888777665 5899999999999888643
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.79 E-value=1.5e-19 Score=164.27 Aligned_cols=146 Identities=9% Similarity=0.028 Sum_probs=105.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEEC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSL 185 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~ 185 (286)
+|+++|++++|||||+++|. ..+.+.+.....+..++.. +.+||||||++|......+++.+|++++|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-------~~giTi~~~~~~~~~~~~~--i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-------KKGTSSDITMYNNDKEGRN--MVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-------EEEEESSSEEEEECSSSSE--EEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH-------hCCEEEEeeEEEEecCCeE--EEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 99999999999999999998 1122223333444444444 9999999999998888888999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEe-CCCCCCCCCCCC--HHHHHHHHHhcC---CCEEE--EeCCC---CC
Q psy10504 186 TNHHTFQDIKQMKELITRVKGSERVPI-LLVAN-KLDLASHQREVP--TLDGQALAQSWG---CPFIE--ASAKN---KT 253 (286)
Q Consensus 186 ~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~n-K~Dl~~~~~~~~--~~~~~~~~~~~~---~~~~~--vSa~~---~~ 253 (286)
++.. ......++..+... ++|. ++++| |+|+ +. .... ..+...+.+..+ +++++ +||++ +.
T Consensus 93 ~~g~-~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~-~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 PQGL-DAHTGECIIALDLL----GFKHGIIALTRSDST-HM-HAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp TTCC-CHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CH-HHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred CCCC-cHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CH-HHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 6543 44445555544442 6787 89999 9998 32 1111 123333333333 68999 99999 99
Q ss_pred cHHHHHHHHHHHhhc
Q psy10504 254 NVNEMFAEIVREMNF 268 (286)
Q Consensus 254 gv~~l~~~i~~~i~~ 268 (286)
|++++++.|.+.++.
T Consensus 166 gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 166 GVDELKARINEVAEK 180 (370)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhccc
Confidence 999999999988764
No 160
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.79 E-value=2.5e-19 Score=161.67 Aligned_cols=120 Identities=11% Similarity=0.168 Sum_probs=93.1
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVPILLVANKL 219 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~ 219 (286)
..+.+++|||+||+.|+.+|..++++++++|+|||++ +..++++...|+..+......+++|+++|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 5678999999999999999999999999999999998 788999999999888765444689999999999
Q ss_pred CCCCCCC-CC-------------------CHHHHHHHHHh----------------cCCCEEEEeCCCCCcHHHHHHHHH
Q psy10504 220 DLASHQR-EV-------------------PTLDGQALAQS----------------WGCPFIEASAKNKTNVNEMFAEIV 263 (286)
Q Consensus 220 Dl~~~~~-~~-------------------~~~~~~~~~~~----------------~~~~~~~vSa~~~~gv~~l~~~i~ 263 (286)
|+.+... .+ +.++...++.. ..+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9852110 01 13444444322 123468999999999999999999
Q ss_pred HHhhcC
Q psy10504 264 REMNFN 269 (286)
Q Consensus 264 ~~i~~~ 269 (286)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988653
No 161
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=9.1e-20 Score=170.39 Aligned_cols=158 Identities=17% Similarity=0.197 Sum_probs=104.0
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCC--------cccchhhh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG--------TEQFASMR 169 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG--------~~~~~~~~ 169 (286)
..+..++|+++|++|||||||+|+|.+..+ ....++++.+.....+...+.. +.+||||| ++++....
T Consensus 19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~--~~liDT~G~~~~~~~~~~~~~~~~ 96 (456)
T 4dcu_A 19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYD--FNLIDTGGIDIGDEPFLAQIRQQA 96 (456)
T ss_dssp ----CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSC--CEEECCCC------CCHHHHHHHH
T ss_pred hhcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCce--EEEEECCCCCCcchHHHHHHHHHH
Confidence 345678999999999999999999998655 3445555555555555555554 89999999 77778888
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEEe
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG-CPFIEAS 248 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~vS 248 (286)
..+++.+|++++|+|+.++.+..+ .++..+.. ..++|+++|+||+|+.+.... ...+ ...+ ...+++|
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l~---~~~~pvilV~NK~D~~~~~~~-----~~e~-~~lg~~~~~~iS 165 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEMRAN-----IYDF-YSLGFGEPYPIS 165 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHH--HHHHHHHT---TCCSCEEEEEECC--------------CCS-GGGSSSSEEECC
T ss_pred HhhHhhCCEEEEEEeCCCCCChHH--HHHHHHHH---HcCCCEEEEEECccchhhhhh-----HHHH-HHcCCCceEEee
Confidence 889999999999999887544433 23333322 248999999999998622111 0111 1223 3567999
Q ss_pred CCCCCcHHHHHHHHHHHhhcCC
Q psy10504 249 AKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 249 a~~~~gv~~l~~~i~~~i~~~~ 270 (286)
|++|.|++++++++.+.+.+..
T Consensus 166 A~~g~gv~~L~~~i~~~l~~~~ 187 (456)
T 4dcu_A 166 GTHGLGLGDLLDAVAEHFKNIP 187 (456)
T ss_dssp TTTCTTHHHHHHHHHTTGGGSC
T ss_pred cccccchHHHHHHHHhhccccc
Confidence 9999999999999999886543
No 162
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.79 E-value=2.1e-20 Score=175.09 Aligned_cols=155 Identities=18% Similarity=0.184 Sum_probs=90.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCCc------------------------------cCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFMEK------------------------------YDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~~------------------------------~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|++++|||||+++|+. +.+... ..+.+.+.....+..++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4678999999999999999999974 222110 01111111122344444
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQ 225 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~ 225 (286)
. .+.+||||||++|...+..++..+|++|+|+|++++. +|+...++...+.... ..++| +++|+||+|+.+..
T Consensus 121 ~--~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 121 R--RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp E--EEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCS
T ss_pred e--EEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCcc
Confidence 3 4899999999999999999999999999999999863 3322223333222221 12677 99999999996321
Q ss_pred C-----CCCHHHHHHHHHhc-------CCCEEEEeCCCCCcHHHHH
Q psy10504 226 R-----EVPTLDGQALAQSW-------GCPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 226 ~-----~~~~~~~~~~~~~~-------~~~~~~vSa~~~~gv~~l~ 259 (286)
. .....+...+.+.. +++++++||++|.|+++++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 01112344444444 3569999999999998755
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.79 E-value=8.5e-20 Score=169.58 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=100.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEECCe
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVDKA 150 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~~ 150 (286)
..++|+++|++|+|||||+++|+.. .+... ..+.+.+.....+..++
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~- 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK- 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS-
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC-
Confidence 5689999999999999999999864 22211 11112222222333344
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHH----HHHHHHhCCCCC-cEEEEEeCCCCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMK----ELITRVKGSERV-PILLVANKLDLASHQ 225 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~----~~i~~~~~~~~~-piivv~nK~Dl~~~~ 225 (286)
+.+.+||||||++|...+..+++.+|++|+|+|+++ .+++....|. ..+..... .++ |+++++||+|+.+..
T Consensus 84 -~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 84 -YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKT-MGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp -CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHH-TTCTTCEEEEECGGGSSST
T ss_pred -eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHH-cCCCeEEEEEEcccCCCcc
Confidence 449999999999999999999999999999999999 5666433221 11111111 144 689999999997321
Q ss_pred C-----CCCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHHH
Q psy10504 226 R-----EVPTLDGQALAQSWG-----CPFIEASAKNKTNVNEMF 259 (286)
Q Consensus 226 ~-----~~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l~ 259 (286)
. .....+...+.+..+ ++++++||++|+|+.+++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence 1 111234455555555 679999999999998543
No 164
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.79 E-value=6.4e-19 Score=176.70 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=115.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCc-------CCCc----------cCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGC-------FMEK----------YDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~-------~~~~----------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
....++|+++|++++|||||+++|.+.. +... ..+.+.+. ..+.++.....+++||||||+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdv--a~v~f~~~~~kI~IIDTPGHe 370 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINT--SHVEYDTPTRHYAHVDCPGHA 370 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CC--SCEEEECSSCEEEEEECCCHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEE--EEEEEcCCCEEEEEEECCChH
Confidence 3467999999999999999999998731 0000 00111111 112233333458999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCCCCC--CCHHHHHHHHHhc
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASHQRE--VPTLDGQALAQSW 240 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~~~~--~~~~~~~~~~~~~ 240 (286)
+|...+..+++.+|++|+|+|++++...+. ..++..+... ++| +|+|+||+|+.++... ....+...+.+..
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 999999999999999999999999754443 3344444332 678 7899999999731111 1123344555555
Q ss_pred C-----CCEEEEeCCCC--------CcHHHHHHHHHHHhhcCCCCcCCCce
Q psy10504 241 G-----CPFIEASAKNK--------TNVNEMFAEIVREMNFNPEKDNASFC 278 (286)
Q Consensus 241 ~-----~~~~~vSa~~~--------~gv~~l~~~i~~~i~~~~~~~~~~~~ 278 (286)
+ ++++++||++| .|++++++.|.+.++......+.+++
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr 496 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFL 496 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCCCGGGSCCE
T ss_pred cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCcccccccee
Confidence 4 68999999999 57999999999988754444444443
No 165
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.2e-19 Score=171.81 Aligned_cols=155 Identities=15% Similarity=0.165 Sum_probs=102.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCc--------------------------------cCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEK--------------------------------YDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~--------------------------------~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|++|+|||||+++|+.....-. ..+.+.+.....+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 4578999999999999999999986522110 12223333344455555
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
.. +.|||||||++|...+..+++.+|++|+|+|++++. ++....++...+.........|+++|+||+|+.+...
T Consensus 245 ~~--~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~ 322 (611)
T 3izq_1 245 AN--FTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQ 322 (611)
T ss_dssp CE--EEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCH
T ss_pred ce--EEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhH
Confidence 44 899999999999999999999999999999998752 1111122333332222222345999999999973211
Q ss_pred CC---CHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504 227 EV---PTLDGQALAQSWG-----CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 227 ~~---~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l 258 (286)
.. ...+...+....+ ++++++||++|.|++++
T Consensus 323 ~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 323 QRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 11 0122233333333 68999999999999876
No 166
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.78 E-value=7.3e-19 Score=164.24 Aligned_cols=151 Identities=17% Similarity=0.184 Sum_probs=100.8
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc------------------------------cCCCccceEEEEEEECC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK------------------------------YDPTIEDFYRKEIEVDK 149 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~------------------------------~~~t~~~~~~~~~~~~~ 149 (286)
...++|+++|++++|||||+++|+.. .+... ..+.+.+.....+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 35699999999999999999999863 22110 01222222233344444
Q ss_pred eEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cHH---HHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TFQ---DIKQMKELITRVKGSERVP-ILLVANKLDLA 222 (286)
Q Consensus 150 ~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~ 222 (286)
..+.+||||||++|...+..++..+|++|+|+|++++. +|+ .....+..+.. .++| +++|+||+|+.
T Consensus 85 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 85 --YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp --EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGG
T ss_pred --ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 45999999999999999999999999999999999863 221 12222222222 2565 99999999997
Q ss_pred CCCCC---CCHHHHHHHHHhcC-----CCEEEEeCCCCCcHHHH
Q psy10504 223 SHQRE---VPTLDGQALAQSWG-----CPFIEASAKNKTNVNEM 258 (286)
Q Consensus 223 ~~~~~---~~~~~~~~~~~~~~-----~~~~~vSa~~~~gv~~l 258 (286)
+.... ....+...+.+..+ ++++++||++|.|+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 21111 11223444445554 68999999999998743
No 167
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8e-19 Score=144.43 Aligned_cols=114 Identities=16% Similarity=0.266 Sum_probs=87.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCC---ccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccC---
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKN--- 175 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~--- 175 (286)
.+.++|+++|++|||||||++++.+..+.. .+.++++. .+.+ +.+.+|||||++.+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~------~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 117 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA------DYDG--SGVTLVDFPGHVKLRYKLSDYLKTRAK 117 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCC--TTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee------eecC--CeEEEEECCCCchHHHHHHHHHHhhcc
Confidence 356899999999999999999999976543 12222211 1123 348899999999998888887766
Q ss_pred -ccEEEEEEECC-CcccHHHHHHHHHHHHHHh---CCCCCcEEEEEeCCCCCC
Q psy10504 176 -GQGFVVVYSLT-NHHTFQDIKQMKELITRVK---GSERVPILLVANKLDLAS 223 (286)
Q Consensus 176 -~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~ 223 (286)
+|++++|+|++ +..+++.+..|+..+.... ..+++|+++|+||+|+.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 89999999999 8889999888887776543 335899999999999973
No 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.77 E-value=6e-20 Score=176.37 Aligned_cols=161 Identities=20% Similarity=0.189 Sum_probs=89.8
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcCc--CCCc------------------------------cCCCccceEEEEEEEC
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSGC--FMEK------------------------------YDPTIEDFYRKEIEVD 148 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~~--~~~~------------------------------~~~t~~~~~~~~~~~~ 148 (286)
....++|+++|++++|||||+++|+... +... ..+++.+.....+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 3457899999999999999999996411 1100 1122223333334444
Q ss_pred CeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc---cH---HHHHHHHHHHHHHhCCCCCc-EEEEEeCCCC
Q psy10504 149 KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH---TF---QDIKQMKELITRVKGSERVP-ILLVANKLDL 221 (286)
Q Consensus 149 ~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl 221 (286)
+ ..+.|||||||++|...+..++..+|++|+|+|++++. .+ ......+..+.. .++| +|+|+||+|+
T Consensus 254 ~--~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl 327 (592)
T 3mca_A 254 K--KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDL 327 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGG
T ss_pred C--eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEecccc
Confidence 3 45899999999999999999999999999999998753 11 111122222222 1565 9999999999
Q ss_pred CCCCCCCC---HHHHHHHH-HhcCC-----CEEEEeCCCCCcHH--------------HHHHHHHHHhh
Q psy10504 222 ASHQREVP---TLDGQALA-QSWGC-----PFIEASAKNKTNVN--------------EMFAEIVREMN 267 (286)
Q Consensus 222 ~~~~~~~~---~~~~~~~~-~~~~~-----~~~~vSa~~~~gv~--------------~l~~~i~~~i~ 267 (286)
.+...... ..+...+. +..++ +++++||++|.|+. .|++.|...++
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 73222111 11222222 33343 69999999999998 78888776654
No 169
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.77 E-value=1.4e-18 Score=157.26 Aligned_cols=125 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred EEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504 144 EIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPIL 213 (286)
Q Consensus 144 ~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pii 213 (286)
.+.+++ +.+++|||+|++.++..|..++++++++|+|+|+++ ..++++...|+..+.......++|+|
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piI 272 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 272 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEE
Confidence 344554 459999999999999999999999999999999999 77899999998888765444689999
Q ss_pred EEEeCCCCCCCC---------------CCCCHHHHHHHHH-----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 214 LVANKLDLASHQ---------------REVPTLDGQALAQ-----------SWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 214 vv~nK~Dl~~~~---------------~~~~~~~~~~~~~-----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
+++||+|+.... ...+..+...+.. ..++.+++|||+++.|++++|+++.+.+.
T Consensus 273 Lv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~ 352 (362)
T 1zcb_A 273 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTIL 352 (362)
T ss_dssp EEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHH
Confidence 999999985211 1245556655541 23467899999999999999999999886
Q ss_pred cCC
Q psy10504 268 FNP 270 (286)
Q Consensus 268 ~~~ 270 (286)
+..
T Consensus 353 ~~~ 355 (362)
T 1zcb_A 353 HDN 355 (362)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 170
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.77 E-value=4.9e-19 Score=154.67 Aligned_cols=160 Identities=18% Similarity=0.224 Sum_probs=90.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCcc-------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcc-------cch
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKY-------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTE-------QFA 166 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~-------~~~ 166 (286)
..++|+++|.+|+|||||+|+|++... ...+ .+|++ +.....+..++..+.+++|||||.. .+.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 468999999999999999999877543 3333 33332 3333444455665679999999973 233
Q ss_pred hhh-------hhccc-------------CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 167 SMR-------DLYIK-------------NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 167 ~~~-------~~~~~-------------~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
.+. ..|+. .+|+++++++.++......-..++..+.. ++|+++|+||+|+.. ..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~-~~ 160 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLT-PE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSC-HH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCC-HH
Confidence 332 22332 27789999977653222222223333322 789999999999862 11
Q ss_pred CCC--HHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 227 EVP--TLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 227 ~~~--~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+.. ...........+++++++||++++|+++++++|.+.++-
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 111 122334445668899999999999999999999987653
No 171
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.75 E-value=4.4e-18 Score=152.16 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=96.9
Q ss_pred EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECC----------CcccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504 143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT----------NHHTFQDIKQMKELITRVKGSERVPI 212 (286)
Q Consensus 143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~pi 212 (286)
..+.+++ +.+++|||+||+.++.+|..|+++++++|+|+|++ +..++++...|+..+.......++|+
T Consensus 154 ~~~~~~~--v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi 231 (340)
T 4fid_A 154 YDFVVKD--IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK 231 (340)
T ss_dssp EEEESSS--CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred EEEEeee--eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence 3444444 45999999999999999999999999999999998 67889988888888877555568999
Q ss_pred EEEEeCCCCCCCC--------------CCCCHHHHHHHH-Hhc--------------------------CCCEEEEeCCC
Q psy10504 213 LLVANKLDLASHQ--------------REVPTLDGQALA-QSW--------------------------GCPFIEASAKN 251 (286)
Q Consensus 213 ivv~nK~Dl~~~~--------------~~~~~~~~~~~~-~~~--------------------------~~~~~~vSa~~ 251 (286)
++++||+|+.... ...+.+++..+. ..+ .+.++++||++
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d 311 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD 311 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence 9999999985210 111344443332 222 25678999999
Q ss_pred CCcHHHHHHHHHHHhhc
Q psy10504 252 KTNVNEMFAEIVREMNF 268 (286)
Q Consensus 252 ~~gv~~l~~~i~~~i~~ 268 (286)
+.|++.+|+.+.+.+.+
T Consensus 312 t~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 312 GSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999998876
No 172
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.75 E-value=1.7e-17 Score=162.08 Aligned_cols=116 Identities=17% Similarity=0.125 Sum_probs=85.2
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC--cCC------C-----c------cCCCccceEEEEEEECCeEEEEEEEeCCC
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG--CFM------E-----K------YDPTIEDFYRKEIEVDKAPCVLEILDTAG 161 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------~-----~------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG 161 (286)
..+..+|+|+|++|+|||||+++|+.. .+. . + ....+.......+.+.+. .+.+|||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~--~i~liDTPG 86 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDH--RINIIDTPG 86 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTE--EEEEECCCS
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCe--EEEEEECcC
Confidence 346789999999999999999999841 110 0 0 111111222334445544 489999999
Q ss_pred cccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 162 ~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
|.+|...+..+++.+|++|+|+|++++.+.+....|...... ++|+++|+||+|+..
T Consensus 87 ~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~-----~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 87 HVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY-----KVPRIAFANKMDKTG 143 (691)
T ss_dssp STTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT-----TCCEEEEEECTTSTT
T ss_pred ccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHc-----CCCEEEEEECCCccc
Confidence 999999999999999999999999998888877666543322 789999999999874
No 173
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.74 E-value=2.7e-19 Score=162.23 Aligned_cols=159 Identities=21% Similarity=0.304 Sum_probs=84.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC-cCCCccC--------CCcc-ceEEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG-CFMEKYD--------PTIE-DFYRKEIEVDKAPCVLEILDTAGT-------EQF 165 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~-~~~~~~~--------~t~~-~~~~~~~~~~~~~~~l~l~DtpG~-------~~~ 165 (286)
..++|+++|++|+|||||+++|.+. .+...+. +|++ +.....+..++..+.+++|||||+ +.|
T Consensus 36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~ 115 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 115 (361)
T ss_dssp CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence 4589999999999999999998764 3333321 2222 222333445566678999999999 667
Q ss_pred hhhhh-------hcccCccEE-----------EEEEECCC-cccHHHHHH-HHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 166 ASMRD-------LYIKNGQGF-----------VVVYSLTN-HHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 166 ~~~~~-------~~~~~~d~v-----------ilv~d~~~-~~s~~~~~~-~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
..++. .|++.++++ +++|++++ ..++..+.. ++..+ ..++|+|+|+||+|+. ..
T Consensus 116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~-~~ 189 (361)
T 2qag_A 116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTL-TL 189 (361)
T ss_dssp CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSS-CH
T ss_pred HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCC-CH
Confidence 76665 555544332 35555544 344444442 22222 2479999999999997 22
Q ss_pred CCCCH--HHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 226 REVPT--LDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 226 ~~~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
+.+.. .+....++..+++++++||+++.| ++.|.++.+.+.+
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~ 233 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA 233 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence 22222 344555566789999999999998 8888777777654
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.74 E-value=3.2e-18 Score=150.69 Aligned_cols=158 Identities=16% Similarity=0.183 Sum_probs=100.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCcc------CCC-----------------------ccc--------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKY------DPT-----------------------IED-------------- 139 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~------~~t-----------------------~~~-------------- 139 (286)
..++|+++|.+|||||||+++|.+..+.+.. .++ +.+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4589999999999999999999998764211 121 100
Q ss_pred ---------eEEEEEEECCeEEEEEEEeCCCcc-------------cchhhhhhcccCccEEE-EEEECCCcccHHHHHH
Q psy10504 140 ---------FYRKEIEVDKAPCVLEILDTAGTE-------------QFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQ 196 (286)
Q Consensus 140 ---------~~~~~~~~~~~~~~l~l~DtpG~~-------------~~~~~~~~~~~~~d~vi-lv~d~~~~~s~~~~~~ 196 (286)
.....+...+ ...+.+|||||.. .+..+...+++.++.++ +|+|+++..+..+...
T Consensus 105 g~~~gi~~~~~~~~~~~~~-~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETT-CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred ccCCCccccceEEEEeCCC-CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 0000111111 1348999999964 34556777888888766 7999988655444333
Q ss_pred HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhc--C-CCEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW--G-CPFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~-~~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
+...+. ..+.|+++|+||+|+.+.... .....+...... + .+++++||++|.|+++++++|.+..
T Consensus 184 ~~~~~~----~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEVD----PQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHC----TTCSSEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHhC----CCCCeEEEEEEccccCCCCch-HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 333332 247899999999999733221 121111100011 2 3678999999999999999998743
No 175
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.74 E-value=5e-17 Score=154.09 Aligned_cols=114 Identities=16% Similarity=0.182 Sum_probs=79.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--cCC------Cc--cCCCc-------------cceEEEEEEECCeEEEEEEEeC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--CFM------EK--YDPTI-------------EDFYRKEIEVDKAPCVLEILDT 159 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~~~------~~--~~~t~-------------~~~~~~~~~~~~~~~~l~l~Dt 159 (286)
+..+|+++|++|+|||||+++|+.. .+. .. ...+. .......+...+. .+.+|||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~--~i~liDT 89 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDC--LVNLLDT 89 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTE--EEEEECC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCe--EEEEEEC
Confidence 5689999999999999999999863 110 00 00011 1111233444444 4899999
Q ss_pred CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
|||.+|......+++.+|++|+|+|++++...+.. .++.. ....++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~-~~~~~----~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTR-KLMEV----TRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHH----HTTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHH-HHHHH----HHHcCCCEEEEEcCcCCcc
Confidence 99999999888999999999999999987543332 22222 2234889999999999974
No 176
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.74 E-value=8.1e-18 Score=140.30 Aligned_cols=161 Identities=16% Similarity=0.147 Sum_probs=98.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccce-EEEEEEECCeEEEEEEEeCCCccc----------chhhhh
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVLEILDTAGTEQ----------FASMRD 170 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~DtpG~~~----------~~~~~~ 170 (286)
....+|+++|++|||||||++++.+..+.....++.+.. ....+.+++ . +.+|||||+.. +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~--~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-G--KRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-T--EEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-C--EEEEECcCCcccccCHHHHHHHHHHHH
Confidence 356899999999999999999999876433333333211 122333333 2 67899999742 233333
Q ss_pred hcc---cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC-CCCCHHHHHHHHHhcC--CCE
Q psy10504 171 LYI---KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ-REVPTLDGQALAQSWG--CPF 244 (286)
Q Consensus 171 ~~~---~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~--~~~ 244 (286)
.++ ..++++++++|++++.+..+. .....+.. .++|+++|+||+|+.+.. +.........+....+ +.+
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~ 175 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQV 175 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCce
Confidence 344 578999999999987655321 11112222 378999999999986321 1111223334444443 567
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 245 IEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 245 ~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+++||+++.|+++++++|.+.+.+.+
T Consensus 176 ~~~Sal~~~~~~~l~~~l~~~~~~~~ 201 (210)
T 1pui_A 176 ETFSSLKKQGVDKLRQKLDTWFSEMQ 201 (210)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHC---
T ss_pred EEEeecCCCCHHHHHHHHHHHHhhcc
Confidence 89999999999999999999876644
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=5.2e-17 Score=158.06 Aligned_cols=113 Identities=18% Similarity=0.136 Sum_probs=81.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC-------------------CCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD-------------------PTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
+..+|+++|+.|+|||||+++|.......... ..+.......+...+ +.+++||||||.
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~--~~~nliDTpG~~ 85 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG--HRVFLLDAPGYG 85 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--EEEEEEECCCSG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--EEEEEEeCCCcc
Confidence 56799999999999999999998532211111 111122233344444 458999999999
Q ss_pred cchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 164 ~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
+|...+..+++.+|++++|+|++++...+.. .++..+.. .++|+++|+||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH----ccCCEEEEecCCchh
Confidence 9999999999999999999999887655544 33333333 278999999999986
No 178
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.72 E-value=6.8e-17 Score=158.02 Aligned_cols=117 Identities=17% Similarity=0.128 Sum_probs=83.7
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc-----------------cCCCccceEEEEEEECC-----eEEEEEEE
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK-----------------YDPTIEDFYRKEIEVDK-----APCVLEIL 157 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~-----------------~~~t~~~~~~~~~~~~~-----~~~~l~l~ 157 (286)
.+..+|+|+|+.|+|||||+++|+.. .+... ..+.+.......+.+++ ..+.++||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45689999999999999999999752 11110 00111111112233332 33669999
Q ss_pred eCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 158 DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
|||||.+|...+..+++.+|++|+|+|++++...+....|... .. .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~-~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQA-NK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHH-HH----cCCCEEEEEeCCCccc
Confidence 9999999999999999999999999999998766665554332 22 2789999999999863
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.72 E-value=8.2e-17 Score=139.60 Aligned_cols=118 Identities=20% Similarity=0.190 Sum_probs=88.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhccc------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIK------ 174 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~------ 174 (286)
+.++|+++|++|+|||||+++|++..+ ...+.+++.......+..++.. +++|||||+.++......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT--INIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCee--EEEEECCCCCCcccchHHHHHHHHHHH
Confidence 579999999999999999999999764 4556666666667777777775 899999999888765544443
Q ss_pred ---CccEEEEEEECCCcccHHHHHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504 175 ---NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLA 222 (286)
Q Consensus 175 ---~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 222 (286)
.+|++++|+++++....+.-..|+..+...... ...|+++|+||+|+.
T Consensus 113 ~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~ 164 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS 164 (262)
T ss_dssp TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence 789999999998765333334666666654321 124999999999996
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.72 E-value=5.4e-17 Score=158.57 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=85.1
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc--CcCCC-----------c------cCCCccceEEEEEEECCeEEEEEEEeCCCc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS--GCFME-----------K------YDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~--~~~~~-----------~------~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~ 162 (286)
.+..+|+|+|++|+|||||+++|+. +.+.. + ...++.......+.+++.. +.+|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~--i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHR--VNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEE--EEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCee--EEEEECcCC
Confidence 4578999999999999999999985 22210 0 0111112223345555544 899999999
Q ss_pred ccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 163 ~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
.+|...+..+++.+|++++|+|++++.+.+....|.. +.. .++|+++|+||+|+..
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 9999999999999999999999999888877766554 333 2789999999999874
No 181
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.69 E-value=4.5e-16 Score=148.13 Aligned_cols=114 Identities=18% Similarity=0.184 Sum_probs=86.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--c----------------CCC-----ccCCCccceEEEEEEECCeEEEEEEEeC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--C----------------FME-----KYDPTIEDFYRKEIEVDKAPCVLEILDT 159 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--~----------------~~~-----~~~~t~~~~~~~~~~~~~~~~~l~l~Dt 159 (286)
+.-+|+|+||.++|||||..+|+.. . +.. ...+-+.......+.+++.. ++|+||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~--iNlIDT 107 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRV--VNLLDT 107 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEE--EEEECC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEE--EEEEeC
Confidence 5578999999999999999999631 1 000 01111112223445666655 899999
Q ss_pred CCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 160 pG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
|||.+|..-..+.++.+|++|+|+|+.++...+....|...... ++|.++++||+|...
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~-----~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR-----ATPVMTFVNKMDREA 166 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCCEEEEEECTTSCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh-----CCceEEEEecccchh
Confidence 99999999999999999999999999999888887777665554 899999999999864
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.68 E-value=2.6e-16 Score=139.65 Aligned_cols=114 Identities=19% Similarity=0.219 Sum_probs=71.8
Q ss_pred EEEEEeCCCccc-------------chhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEEEEEeC
Q psy10504 153 VLEILDTAGTEQ-------------FASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPILLVANK 218 (286)
Q Consensus 153 ~l~l~DtpG~~~-------------~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piivv~nK 218 (286)
.+.+|||||..+ +......+++.+|++++|+|+.+.. ...+...+...+ ...+.|+++|+||
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~NK 207 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITK 207 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEEC
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEEcC
Confidence 489999999753 4456677889999999999974432 111111222222 2247899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCC---C---CCcHHHHHHHHHHHhhcCCC
Q psy10504 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAK---N---KTNVNEMFAEIVREMNFNPE 271 (286)
Q Consensus 219 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~---~---~~gv~~l~~~i~~~i~~~~~ 271 (286)
+|+.+.... ............+..++++|+. + +.|++++++.+.+.++..+.
T Consensus 208 ~Dl~~~~~~-~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~ 265 (315)
T 1jwy_B 208 LDLMDKGTD-AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI 265 (315)
T ss_dssp TTSSCSSCC-CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred cccCCcchH-HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence 999733321 1211111001122566666655 4 78999999999999887654
No 183
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.68 E-value=3.5e-16 Score=143.83 Aligned_cols=162 Identities=15% Similarity=0.149 Sum_probs=113.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccc----hhhhhhc---ccCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF----ASMRDLY---IKNG 176 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~----~~~~~~~---~~~~ 176 (286)
..|+++|++|||||||++++.+... ...++.++.......+..++ ...+.+||+||..+. ..+...+ +..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 3589999999999999999988643 34455554444445555554 123889999997432 2222222 4569
Q ss_pred cEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 177 QGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 177 d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
+.++.++|++ ...++++..+...+..+. ...+.|.++|+||+|+... .............+.+++.+||++++|+
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~---~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE---EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH---HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH---HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 9999999998 566677776666555432 1125799999999998722 1222333444455789999999999999
Q ss_pred HHHHHHHHHHhhcCCC
Q psy10504 256 NEMFAEIVREMNFNPE 271 (286)
Q Consensus 256 ~~l~~~i~~~i~~~~~ 271 (286)
++++++|.+.+.+.+.
T Consensus 313 ~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 313 PALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999976554
No 184
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.67 E-value=2.1e-16 Score=154.45 Aligned_cols=162 Identities=15% Similarity=0.224 Sum_probs=108.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCC-ccCCCccceE--------EEEEEE--------------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFME-KYDPTIEDFY--------RKEIEV-------------------------- 147 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~-~~~~t~~~~~--------~~~~~~-------------------------- 147 (286)
..++|+|+|++|+|||||+|+|++..+.. ...+++.... ..+..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 56999999999999999999999876432 3333331110 001111
Q ss_pred --------------------CCeE--EEEEEEeCCCccc---chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHH
Q psy10504 148 --------------------DKAP--CVLEILDTAGTEQ---FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT 202 (286)
Q Consensus 148 --------------------~~~~--~~l~l~DtpG~~~---~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~ 202 (286)
+... ..+.+|||||... .......+++.+|++++|+|++++.+..+...|...+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~ 227 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK 227 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH
Confidence 1100 2388999999765 34456678899999999999999888777665544432
Q ss_pred HHhCCCCCcEEEEEeCCCCCCCCC--CCCHHH-------HH-----HHHHh--------cCCCEEEEeCC----------
Q psy10504 203 RVKGSERVPILLVANKLDLASHQR--EVPTLD-------GQ-----ALAQS--------WGCPFIEASAK---------- 250 (286)
Q Consensus 203 ~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~-------~~-----~~~~~--------~~~~~~~vSa~---------- 250 (286)
. .+.|+++|+||+|+..... ...... .. .+... ...++++|||+
T Consensus 228 ~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 228 G----RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp T----SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred h----hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 2 2679999999999863210 001000 11 11111 12479999999
Q ss_pred ----CCCcHHHHHHHHHHHhhc
Q psy10504 251 ----NKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 251 ----~~~gv~~l~~~i~~~i~~ 268 (286)
++.|++++++.|.+.+..
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 185
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.67 E-value=3.1e-17 Score=145.17 Aligned_cols=134 Identities=14% Similarity=0.157 Sum_probs=110.0
Q ss_pred HHHHHHhcCcCC-CccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHH
Q psy10504 119 ALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQ 196 (286)
Q Consensus 119 SLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~ 196 (286)
+|+.+++.+.|. ..+.+|+++.....+..++ .+++||+ +++|+.+++.+++++|++++|||++++. +++.+..
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~ 106 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDK 106 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHH
Confidence 688888889998 8899999987765433333 3889999 9999999999999999999999999987 7888888
Q ss_pred HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
|+..+.. .++|+++|+||+|+.+ .+. ..+.+.+++.++ .++++|||++|.|++++|+.+..
T Consensus 107 ~l~~~~~----~~~piilv~NK~DL~~-~~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 107 FLVLAEK----NELETVMVINKMDLYD-EDD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHH----TTCEEEEEECCGGGCC-HHH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHH----CCCCEEEEEeHHHcCC-chh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 9887655 3789999999999972 222 134556666666 89999999999999999988754
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.66 E-value=2.4e-17 Score=151.04 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=48.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEE---------------------ECC-eEEEEEEEeCCC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIE---------------------VDK-APCVLEILDTAG 161 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~---------------------~~~-~~~~l~l~DtpG 161 (286)
++|+++|.+|||||||+|+|.+... ...++.++.+....... +++ ..+.+.||||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 4899999999999999999998763 34555555443333211 122 245699999999
Q ss_pred ccc----chhhhh---hcccCccEEEEEEECCCc
Q psy10504 162 TEQ----FASMRD---LYIKNGQGFVVVYSLTNH 188 (286)
Q Consensus 162 ~~~----~~~~~~---~~~~~~d~vilv~d~~~~ 188 (286)
+.+ ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 222333 456899999999999875
No 187
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.66 E-value=2.2e-15 Score=131.08 Aligned_cols=117 Identities=18% Similarity=0.206 Sum_probs=83.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhhh-------hc-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD-------LY- 172 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~-------~~- 172 (286)
..++|+++|.+|+|||||+|+|++..+ .....+++.+.....+..++.. +.+|||||+.++..+.. .+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFT--LNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEE--EEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeE--EEEEECCCCCCCccchHHHHHHHHHHh
Confidence 569999999999999999999998765 3444555555555556666555 89999999987654322 12
Q ss_pred -ccCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCC-CCCcEEEEEeCCCCC
Q psy10504 173 -IKNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGS-ERVPILLVANKLDLA 222 (286)
Q Consensus 173 -~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~-~~~piivv~nK~Dl~ 222 (286)
.+.+|++++|+|+++.. +.. -..|+..+...... ..+|+++|+||+|+.
T Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~ 167 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFS 167 (270)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCC
T ss_pred hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcccccCEEEEEECcccC
Confidence 34799999999997643 332 33566666553221 126999999999986
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.65 E-value=2.1e-16 Score=143.19 Aligned_cols=157 Identities=15% Similarity=0.167 Sum_probs=102.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc-ceE-----------------------------------------
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFY----------------------------------------- 141 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~-~~~----------------------------------------- 141 (286)
-++|+|+|++|||||||+++|.+..+.+...++.+ ...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 34999999999999999999999776433322221 000
Q ss_pred -------------EEEEEECCeEEEEEEEeCCCcccc-------------hhhhhhcccCccEEEEEEECCCcccHHHHH
Q psy10504 142 -------------RKEIEVDKAPCVLEILDTAGTEQF-------------ASMRDLYIKNGQGFVVVYSLTNHHTFQDIK 195 (286)
Q Consensus 142 -------------~~~~~~~~~~~~l~l~DtpG~~~~-------------~~~~~~~~~~~d~vilv~d~~~~~s~~~~~ 195 (286)
...+.... ...+++|||||...+ ..+...|++.+|++++|+|..+..... .
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~-~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~ 190 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPN-VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S 190 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETT-SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred hcCCCCCcccceEEEEEeCCC-CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence 01111111 123889999998876 556778899999999999876533221 2
Q ss_pred HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHH
Q psy10504 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265 (286)
Q Consensus 196 ~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~ 265 (286)
.|+..+.. ....+.|+++|+||+|+.+. ........+......+.+++++|+.++.++++.++.....
T Consensus 191 ~~~~l~~~-~~~~~~~~i~V~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~ 258 (360)
T 3t34_A 191 DAIKISRE-VDPSGDRTFGVLTKIDLMDK-GTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAAR 258 (360)
T ss_dssp HHHHHHHH-SCTTCTTEEEEEECGGGCCT-TCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHH
T ss_pred HHHHHHHH-hcccCCCEEEEEeCCccCCC-cccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHH
Confidence 33333333 23347899999999999733 2223333333344566889999999999998876654443
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.63 E-value=1.1e-16 Score=141.52 Aligned_cols=160 Identities=20% Similarity=0.281 Sum_probs=85.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC-cCCCcc--------CCCcc-ceEEEEEEECCeEEEEEEEeCCCc-------ccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG-CFMEKY--------DPTIE-DFYRKEIEVDKAPCVLEILDTAGT-------EQF 165 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~-~~~~~~--------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~-------~~~ 165 (286)
-.++|+++|++|+|||||++++.+. .+.... .++.. .........++....+++|||+|. +.+
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 4589999999999999999998874 443322 11211 122233333455667999999998 555
Q ss_pred hhhhh-------hcccCc-------------cEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 166 ASMRD-------LYIKNG-------------QGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 166 ~~~~~-------~~~~~~-------------d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
..+.. .+++.. ++++++.+.+. .+++... ...+.... .++|+++|+||.|+.. .
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~--~~~l~~l~--~~~~iilV~~K~Dl~~-~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLD--VAFMKAIH--NKVNIVPVIAKADTLT-L 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHH--HHHHHHHT--TTSCEEEEECCGGGSC-H
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHH--HHHHHHHH--hcCCEEEEEEeCCCCC-H
Confidence 55544 444332 33444444322 2333333 13333322 3689999999999872 2
Q ss_pred CCC--CHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 226 REV--PTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 226 ~~~--~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
++. ...+....++..+++++++||+++ |++++|+++.+.+.+.
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 221 234566777888999999999999 9999999999988653
No 190
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.61 E-value=2.2e-16 Score=153.01 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=113.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhc--CcCCCc----cCCCcc-------------ceEEEEEEECCeEEEEEEEeCCCcccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS--GCFMEK----YDPTIE-------------DFYRKEIEVDKAPCVLEILDTAGTEQF 165 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~--~~~~~~----~~~t~~-------------~~~~~~~~~~~~~~~l~l~DtpG~~~~ 165 (286)
-+|+|+||.++|||||..+|+. +.+... ...+.. ......+.+++.. ++++|||||.+|
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~--iNlIDTPGH~DF 80 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTK--VNIIDTPGHMDF 80 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCB--CCCEECCCSSST
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEE--EEEEECCCcHHH
Confidence 3689999999999999999974 211110 000111 1112233444544 899999999999
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC-----------------
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV----------------- 228 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~----------------- 228 (286)
.....+.++.+|++|+|+|+.++...+...-|...... ++|.++++||+|....+...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~-----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~ 155 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM-----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQ 155 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH-----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc-----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccc
Confidence 99999999999999999999998887777666666555 88999999999986332110
Q ss_pred --------------CHHHHHH------------------------------HHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 229 --------------PTLDGQA------------------------------LAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 229 --------------~~~~~~~------------------------------~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
.....+. +....-.|++..||+++.|++.+++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~ 235 (638)
T 3j25_A 156 KVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITN 235 (638)
T ss_dssp CCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHH
T ss_pred eeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhc
Confidence 0000000 01111268889999999999999999999
Q ss_pred HhhcCCCCcC
Q psy10504 265 EMNFNPEKDN 274 (286)
Q Consensus 265 ~i~~~~~~~~ 274 (286)
.++......+
T Consensus 236 ~~p~p~~~~~ 245 (638)
T 3j25_A 236 KFYSSTHRGP 245 (638)
T ss_dssp SCCCSGGGSC
T ss_pred cccCcccchh
Confidence 8876554433
No 191
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.61 E-value=1.3e-15 Score=139.17 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=98.0
Q ss_pred EEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCC----------cccHHHHHHHHHHHHHHhCCCCCcE
Q psy10504 143 KEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTN----------HHTFQDIKQMKELITRVKGSERVPI 212 (286)
Q Consensus 143 ~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~pi 212 (286)
..+.+++ +.+++|||+|++.++.+|..|+++++++|+|||+++ ..++++...|+..+......+++|+
T Consensus 210 ~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 210 TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 4556665 559999999999999999999999999999999999 8899999999999887555568999
Q ss_pred EEEEeCCCCCCCCC--CC---------------------------CHHHHHHHH-----Hh--------cCCCEEEEeCC
Q psy10504 213 LLVANKLDLASHQR--EV---------------------------PTLDGQALA-----QS--------WGCPFIEASAK 250 (286)
Q Consensus 213 ivv~nK~Dl~~~~~--~~---------------------------~~~~~~~~~-----~~--------~~~~~~~vSa~ 250 (286)
++|+||+|+..... .. ...++..++ .. ..+.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999852110 01 123343332 21 23557899999
Q ss_pred CCCcHHHHHHHHHHHhhcC
Q psy10504 251 NKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 251 ~~~gv~~l~~~i~~~i~~~ 269 (286)
++.||+++|+++.+.+...
T Consensus 368 d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 192
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.61 E-value=1.6e-15 Score=150.99 Aligned_cols=116 Identities=22% Similarity=0.240 Sum_probs=86.5
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC--cCCCc---------------cC-CCcc-ceEEEEEE------------ECCe
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG--CFMEK---------------YD-PTIE-DFYRKEIE------------VDKA 150 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~--~~~~~---------------~~-~t~~-~~~~~~~~------------~~~~ 150 (286)
.+..+|+|+|++|+|||||+++|+.. ..... .. .|+. ......+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 35689999999999999999999863 11110 00 0111 11112222 2344
Q ss_pred EEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 151 PCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 151 ~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+.+++||||||.+|...+..+++.+|++|+|+|++++.+.+....|...... ++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~-----~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE-----RIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT-----TCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCeEEEEECCCcc
Confidence 67799999999999999999999999999999999999888887666554432 78999999999986
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1e-15 Score=140.76 Aligned_cols=159 Identities=18% Similarity=0.265 Sum_probs=81.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC-Ccc-------CCCcc-ceEEEEEEECCeEEEEEEEeCCCcccch-------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKY-------DPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQFA------- 166 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~-~~~-------~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~~------- 166 (286)
-.++|+|+|++|+|||||++.|++..+. ..+ .+++. +.....+...+....+++||++|...+.
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 4588999999999999999999987653 211 11221 1122223334455579999999976531
Q ss_pred h------------------hhhhcccCccEEEEEEECCCc-ccHHHHH-HHHHHHHHHhCCCCCcEEEEEeCCCCCCCCC
Q psy10504 167 S------------------MRDLYIKNGQGFVVVYSLTNH-HTFQDIK-QMKELITRVKGSERVPILLVANKLDLASHQR 226 (286)
Q Consensus 167 ~------------------~~~~~~~~~d~vilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~ 226 (286)
. +...++.++++.+++|+.+.. .++.... .|+..+. .++|+|+|+||+|+. ..+
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll-~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTL-TPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSS-CHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCc-cHH
Confidence 1 123355666665555555432 3444443 3444442 278999999999987 223
Q ss_pred CCCH--HHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 227 EVPT--LDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 227 ~~~~--~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.+.. ......+...+++++++||+++.+++++|..+.+.++
T Consensus 184 ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 2222 3455566677899999999999999999988887654
No 194
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=2e-14 Score=140.86 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=85.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC--------cCCCc-----------cCCCccceEEEEEEECC-----eEEEEEEEe
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG--------CFMEK-----------YDPTIEDFYRKEIEVDK-----APCVLEILD 158 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~--------~~~~~-----------~~~t~~~~~~~~~~~~~-----~~~~l~l~D 158 (286)
+.-+|+|+||.++|||||..+|+.. ..... ..+-+.......+.+.+ ..+.++++|
T Consensus 12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID 91 (709)
T 4fn5_A 12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID 91 (709)
T ss_dssp GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence 4557999999999999999999741 11110 00001111122333332 356799999
Q ss_pred CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
||||.+|..-..+.++.+|++|+|+|+..+...+...-|...... ++|.++++||+|..
T Consensus 92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~-----~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY-----GVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH-----TCCEEEEEECSSST
T ss_pred CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEcccccc
Confidence 999999999999999999999999999999888888777777666 89999999999986
No 195
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.57 E-value=3e-16 Score=141.88 Aligned_cols=156 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccC------CC-----------------------ccc--------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYD------PT-----------------------IED-------------- 139 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~------~t-----------------------~~~-------------- 139 (286)
..++|+++|.+|||||||+++|.+..+.+... ++ +.+
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999977642221 11 000
Q ss_pred ---------eEEEEEEECCeEEEEEEEeCCCcc-------------cchhhhhhcccCcc-EEEEEEECCCcccHHHHHH
Q psy10504 140 ---------FYRKEIEVDKAPCVLEILDTAGTE-------------QFASMRDLYIKNGQ-GFVVVYSLTNHHTFQDIKQ 196 (286)
Q Consensus 140 ---------~~~~~~~~~~~~~~l~l~DtpG~~-------------~~~~~~~~~~~~~d-~vilv~d~~~~~s~~~~~~ 196 (286)
.....+...+ ...++||||||.. .+..+...|++.++ ++++|+|+++...-.+...
T Consensus 110 g~~~gi~~~~~~~~i~~~~-~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETT-CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred ccCCCcccCceEEEEecCC-CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence 0000111111 2348999999963 34456666776655 5555666665332222222
Q ss_pred HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHH--HHHhcC-CCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQA--LAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~--~~~~~~-~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
++ .. ....+.|+++|+||+|+.+.... .....+. .....+ .+++++||+++.|++++++++.+
T Consensus 189 i~---~~-~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VA---KE-VDPQGQRTIGVITKLDLMDEGTD-ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HH---HH-HCTTCTTEEEEEECGGGSCTTCC-CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HH---HH-hCcCCCceEEEeccccccCcchh-HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22 22 22347899999999999733221 1111110 000112 35678999999999999999987
No 196
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.56 E-value=2.3e-15 Score=126.47 Aligned_cols=154 Identities=20% Similarity=0.139 Sum_probs=92.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCc-------cCCCcc--------ceEEEEEEEC----------------CeE
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEK-------YDPTIE--------DFYRKEIEVD----------------KAP 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~-------~~~t~~--------~~~~~~~~~~----------------~~~ 151 (286)
+..+|+++|++|+|||||+++|........ ...+.. ......+... ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 347899999999999999999987421110 011000 0000111110 112
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL 231 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 231 (286)
+.+.+|||+|+.... ..+....+.+++|+|+++.... .|.. .... +.|+++|+||+|+.+ .......
T Consensus 109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~----~~~~-~~~~----~~~~iiv~NK~Dl~~-~~~~~~~ 175 (221)
T 2wsm_A 109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV----VEKH-PEIF----RVADLIVINKVALAE-AVGADVE 175 (221)
T ss_dssp CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH----HHHC-HHHH----HTCSEEEEECGGGHH-HHTCCHH
T ss_pred CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh----hhhh-hhhh----hcCCEEEEecccCCc-chhhHHH
Confidence 347899999952111 1122357889999999876421 1111 1111 468999999999862 2122344
Q ss_pred HHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 232 DGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 232 ~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
+........ +.+++++||++|.|+++++++|.+.+...
T Consensus 176 ~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 176 KMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp HHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 444444443 47899999999999999999999988654
No 197
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.56 E-value=2.7e-15 Score=135.70 Aligned_cols=103 Identities=22% Similarity=0.335 Sum_probs=69.9
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTL 231 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~ 231 (286)
+.+.||||||... .....+..+|++++|+|.......+.+.. ...+.|+++|+||+|+... ... ..
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~-~~~-~~ 237 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHH-KEA-RL 237 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGH-HHH-HH
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcCh-hHH-HH
Confidence 3488999999543 23344588999999999877654433321 1124699999999998621 111 11
Q ss_pred HHHHHHHh----------cCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 232 DGQALAQS----------WGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 232 ~~~~~~~~----------~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
....+... ++.+++++||++|.|+++++++|.+.+..
T Consensus 238 ~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 238 AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 11222221 25789999999999999999999998764
No 198
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.55 E-value=6.6e-14 Score=126.18 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=102.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCcccch--
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQFA-- 166 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~~~-- 166 (286)
++|+++|.+|+|||||+|+|.+..+ ...++.++.+.....+.+++.. ..+++|||||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 6899999999999999999998764 3445555444433445555521 358999999988754
Q ss_pred --hhhh---hcccCccEEEEEEECCCc----------ccHHHHHHHHHHH------------------------------
Q psy10504 167 --SMRD---LYIKNGQGFVVVYSLTNH----------HTFQDIKQMKELI------------------------------ 201 (286)
Q Consensus 167 --~~~~---~~~~~~d~vilv~d~~~~----------~s~~~~~~~~~~i------------------------------ 201 (286)
.+.. .+++.+|++++|+|+++. ..++++..+..++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2322 347899999999999862 2233322211111
Q ss_pred ----------H-------------------HHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCC-
Q psy10504 202 ----------T-------------------RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKN- 251 (286)
Q Consensus 202 ----------~-------------------~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~- 251 (286)
. .+.....+|+++++||.|... ............+...+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~~n~~~~~v~~~~~~~~~~~i~~sA~~E 241 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-ENNPYLDRVREIAAKEGAVVVPVCAAIE 241 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-SSCHHHHHHHHHHHHTTCEEEEECHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-cccHHHHHHHHHHHHcCCCEEEechHHH
Confidence 0 011223589999999999642 222234455666667788999999763
Q ss_pred ---------------------CCcHHHHHHHHHHHh
Q psy10504 252 ---------------------KTNVNEMFAEIVREM 266 (286)
Q Consensus 252 ---------------------~~gv~~l~~~i~~~i 266 (286)
..|++.+.+...+.+
T Consensus 242 ~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L 277 (363)
T 1jal_A 242 SEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277 (363)
T ss_dssp HHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred HHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence 356777777665544
No 199
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.50 E-value=4.1e-17 Score=137.76 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=89.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccc-eE------------EEEEEEC-CeE-----------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIED-FY------------RKEIEVD-KAP----------------- 151 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~-~~------------~~~~~~~-~~~----------------- 151 (286)
+.++|+++|++|||||||+++|....+...+.+++.. +. ...+.++ +..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 3589999999999999999999986554433332221 00 0111111 100
Q ss_pred --EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCC
Q psy10504 152 --CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVP 229 (286)
Q Consensus 152 --~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~ 229 (286)
..+.++|++|.-.. ...+-...+..+.++|+........ .. ... . +.|.++|+||+|+.+ .+...
T Consensus 117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~--~----~~~~iiv~NK~Dl~~-~~~~~ 183 (226)
T 2hf9_A 117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI--M----KTADLIVINKIDLAD-AVGAD 183 (226)
T ss_dssp GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH--H----TTCSEEEEECGGGHH-HHTCC
T ss_pred CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH--h----hcCCEEEEeccccCc-hhHHH
Confidence 12445566552110 0111223455667777533211110 00 011 1 468899999999862 22234
Q ss_pred HHHHHHHHHhc--CCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 230 TLDGQALAQSW--GCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 230 ~~~~~~~~~~~--~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
..+........ +.+++++||++|.|++++|++|.+.+..
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 184 IKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 45555555543 5789999999999999999999988754
No 200
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.49 E-value=1.1e-14 Score=131.39 Aligned_cols=102 Identities=18% Similarity=0.165 Sum_probs=61.9
Q ss_pred EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD 232 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 232 (286)
.+.++||||.... .......+|++++|+|++++...+.+.. .+ -..|.++|+||+|+.+.. .. ...
T Consensus 168 ~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~-~~-~~~ 233 (349)
T 2www_A 168 DIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIV-PA-RRI 233 (349)
T ss_dssp SEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHH-HH-HHH
T ss_pred CEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCch-hH-HHH
Confidence 3789999995422 2344678999999999987643222211 11 146889999999986210 00 001
Q ss_pred HHHHHH----------hcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 233 GQALAQ----------SWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 233 ~~~~~~----------~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
...+.. .+..+++.+||++|.|+++++++|.+.+..
T Consensus 234 ~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 234 QAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 112211 124578999999999999999999987643
No 201
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.48 E-value=1.8e-13 Score=123.93 Aligned_cols=83 Identities=20% Similarity=0.184 Sum_probs=57.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECC-------------------eEEEEEEEeCCCccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDK-------------------APCVLEILDTAGTEQ 164 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~-------------------~~~~l~l~DtpG~~~ 164 (286)
++|+++|.+|+|||||++++.+... ...++.++.+.......+++ ....+++|||||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 5799999999999999999998642 34444443322222333322 224589999999876
Q ss_pred chh----hh---hhcccCccEEEEEEECCC
Q psy10504 165 FAS----MR---DLYIKNGQGFVVVYSLTN 187 (286)
Q Consensus 165 ~~~----~~---~~~~~~~d~vilv~d~~~ 187 (286)
+.. +. ...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 531 22 235789999999999986
No 202
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=6.1e-14 Score=133.53 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=80.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCC---CccCCCccceEEEEEE---------------------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFM---EKYDPTIEDFYRKEIE--------------------------------- 146 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~---~~~~~t~~~~~~~~~~--------------------------------- 146 (286)
..++|+|+|.+|+|||||+|+|++..+. ....+++.........
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 5689999999999999999999998763 2233333221111100
Q ss_pred ----ECCe-EEEEEEEeCCCccc-----------chhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC
Q psy10504 147 ----VDKA-PCVLEILDTAGTEQ-----------FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV 210 (286)
Q Consensus 147 ----~~~~-~~~l~l~DtpG~~~-----------~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~ 210 (286)
..+. ...+.||||||+.. |......++..+|++++|+|+++....+....++..+.. .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence 0000 01488999999875 456667788999999999999886555555555555433 267
Q ss_pred cEEEEEeCCCCC
Q psy10504 211 PILLVANKLDLA 222 (286)
Q Consensus 211 piivv~nK~Dl~ 222 (286)
|+++|+||+|+.
T Consensus 220 pvilVlNK~Dl~ 231 (550)
T 2qpt_A 220 KIRVVLNKADMV 231 (550)
T ss_dssp GEEEEEECGGGS
T ss_pred CEEEEEECCCcc
Confidence 999999999987
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.47 E-value=4.2e-13 Score=115.57 Aligned_cols=116 Identities=12% Similarity=-0.013 Sum_probs=71.3
Q ss_pred EEEEEEeCCCcccchhhhh------hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRD------LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~------~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.+|||||+.++..... ..+.. +++++++|+.......+...............++|+++|+||+|+...
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~- 186 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE- 186 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH-
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc-
Confidence 3588999999876654322 24466 899999988654443333222111111111126899999999998622
Q ss_pred CCC--------CHHHH-HH-----------------HHHhcC--CCEEEEeCCCCCcHHHHHHHHHHHhhcC
Q psy10504 226 REV--------PTLDG-QA-----------------LAQSWG--CPFIEASAKNKTNVNEMFAEIVREMNFN 269 (286)
Q Consensus 226 ~~~--------~~~~~-~~-----------------~~~~~~--~~~~~vSa~~~~gv~~l~~~i~~~i~~~ 269 (286)
... ..... .. +.+.++ .+++++||+++.|+++++++|.+.+...
T Consensus 187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 111 00000 00 012333 5899999999999999999999887653
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.43 E-value=1.2e-13 Score=124.17 Aligned_cols=102 Identities=21% Similarity=0.189 Sum_probs=64.1
Q ss_pred EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCH--
Q psy10504 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPT-- 230 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~-- 230 (286)
.+.||||||...+.. .....+|++++|+|++++...+.+.. ... +.|.++|+||+|+.+. .....
T Consensus 150 ~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~~------~~p~ivv~NK~Dl~~~-~~~~~~~ 216 (341)
T 2p67_A 150 DVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GLM------EVADLIVINKDDGDNH-TNVAIAR 216 (341)
T ss_dssp SEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HHH------HHCSEEEECCCCTTCH-HHHHHHH
T ss_pred CEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hhh------cccCEEEEECCCCCCh-HHHHHHH
Confidence 488999999765443 24689999999999976543222211 111 3588999999998621 11100
Q ss_pred HHHHHHHHhc-------CCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 231 LDGQALAQSW-------GCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 231 ~~~~~~~~~~-------~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 0111111111 356899999999999999999998765
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.42 E-value=2.4e-13 Score=132.69 Aligned_cols=161 Identities=17% Similarity=0.193 Sum_probs=100.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccce-----------------------------------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDF----------------------------------------- 140 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~----------------------------------------- 140 (286)
..++|+|+|.+++|||||+|+|.+..+ +.....++...
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 346999999999999999999999766 22222222111
Q ss_pred ----------EEEEEEECCeEEEEEEEeCCCccc-------------chhhhhhcc-cCccEEEEEEECCCcccHHHHHH
Q psy10504 141 ----------YRKEIEVDKAPCVLEILDTAGTEQ-------------FASMRDLYI-KNGQGFVVVYSLTNHHTFQDIKQ 196 (286)
Q Consensus 141 ----------~~~~~~~~~~~~~l~l~DtpG~~~-------------~~~~~~~~~-~~~d~vilv~d~~~~~s~~~~~~ 196 (286)
....+...+. ..+.|+||||... +..+...|+ ..+|++++|+|++++...++...
T Consensus 130 g~~~~is~~~i~l~I~~P~~-~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHV-LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTC-CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCCC-CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 1111111111 1378999999543 222334444 57899999999987654444322
Q ss_pred HHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHh----cC-CCEEEEeCCCCCcHHHHHHHHHHH---hhc
Q psy10504 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQS----WG-CPFIEASAKNKTNVNEMFAEIVRE---MNF 268 (286)
Q Consensus 197 ~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~----~~-~~~~~vSa~~~~gv~~l~~~i~~~---i~~ 268 (286)
+...+. ..+.|+++|+||+|+.+.... .. .... .+. .+ .+++.+||++|.|++++++.+.+. +++
T Consensus 209 ll~~L~----~~g~pvIlVlNKiDlv~~~~~-~~-~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe 281 (772)
T 3zvr_A 209 IAKEVD----PQGQRTIGVITKLDLMDEGTD-AR-DVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 281 (772)
T ss_dssp HHHHHC----TTCSSEEEEEECTTSSCTTCC-SH-HHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred HHHHHH----hcCCCEEEEEeCcccCCcchh-hH-HHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence 333322 237899999999999743322 11 1111 111 12 356789999999999999999873 554
Q ss_pred CCC
Q psy10504 269 NPE 271 (286)
Q Consensus 269 ~~~ 271 (286)
.+.
T Consensus 282 ~P~ 284 (772)
T 3zvr_A 282 HPS 284 (772)
T ss_dssp CTT
T ss_pred Ccc
Confidence 443
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.40 E-value=5.4e-12 Score=114.27 Aligned_cols=153 Identities=14% Similarity=0.115 Sum_probs=100.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc-CCCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchh----h---hhhcccC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC-FMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFAS----M---RDLYIKN 175 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~----~---~~~~~~~ 175 (286)
..+|+++|.||||||||+|+|.+.. ...+++.|+.+.....+.+++.+ ++++||||..+-.. + ....++.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~--i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAK--IQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEE--EEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcE--EEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 4789999999999999999999854 36788899999999999999987 88999999643211 1 2234578
Q ss_pred ccEEEEEEECCCcccHHHHHHHHHHHHHHh-CCCCCcEEEEEeCCCCCC-------CCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504 176 GQGFVVVYSLTNHHTFQDIKQMKELITRVK-GSERVPILLVANKLDLAS-------HQREVPTLDGQALAQSWGCPFIEA 247 (286)
Q Consensus 176 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~~~~~~~~~~v 247 (286)
||++++|+|+++|. .+.......+..+. .....|.++++||.|... ........+...+...+.+.--++
T Consensus 150 ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv 227 (376)
T 4a9a_A 150 CNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEI 227 (376)
T ss_dssp CSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEE
T ss_pred cCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCe
Confidence 99999999999874 22222333333321 223578899999999742 112345555555555555332222
Q ss_pred eCCCCCcHHHHHH
Q psy10504 248 SAKNKTNVNEMFA 260 (286)
Q Consensus 248 Sa~~~~gv~~l~~ 260 (286)
-...+...+++.+
T Consensus 228 ~~~~nv~eddl~d 240 (376)
T 4a9a_A 228 AFRCDATVDDLID 240 (376)
T ss_dssp EECSCCCHHHHHH
T ss_pred eecccCCHHHHHH
Confidence 2233344444443
No 207
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.30 E-value=6.4e-13 Score=109.82 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=69.3
Q ss_pred CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHH---h-CCCCCcEEEEEeCC-CCCCCCCCCCHHHH
Q psy10504 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV---K-GSERVPILLVANKL-DLASHQREVPTLDG 233 (286)
Q Consensus 159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~---~-~~~~~piivv~nK~-Dl~~~~~~~~~~~~ 233 (286)
.+||+.++.+|+.|++++|++|+|+|++|.+..+ .+..+..+... . ...++|++|++||. |++.+ .+..+.
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A---ms~~EI 184 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 184 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB---CCHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC---CCHHHH
Confidence 3489999999999999999999999999986554 44433222221 1 12588999999995 67522 222222
Q ss_pred HHHHH----hcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 234 QALAQ----SWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 234 ~~~~~----~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
..... ...+.+..|||++|+|+.+.++||.+.+..+.
T Consensus 185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 22111 12356899999999999999999998886543
No 208
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=2.3e-11 Score=107.37 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=88.9
Q ss_pred CCccceEEEEEEECCeEEEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcc-cHHHHHHHHHHHHHHhCCCCCcEE
Q psy10504 135 PTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHH-TFQDIKQMKELITRVKGSERVPIL 213 (286)
Q Consensus 135 ~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~pii 213 (286)
++++|+.......++..+ +.+ .++++..+.+.+++++|++++|+|++++. +++.+..|+..+.. .++|++
T Consensus 44 ~~vGD~V~~~~~~~~~g~---I~~--i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~i 114 (302)
T 2yv5_A 44 IYAGDYVWGEVVDPNTFA---IEE--VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPV 114 (302)
T ss_dssp CCBTCEEEEEEEETTEEE---EEE--ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEE
T ss_pred CcCceEEEEEEccCCeEE---EEe--eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEE
Confidence 667776655544333322 222 37788888889999999999999999986 88888888886655 379999
Q ss_pred EEEeCCCCCCCCCCCC-HHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 214 LVANKLDLASHQREVP-TLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 214 vv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
+|+||+|+.+ ...+. ..+.....+..+.+++++||++|.|++++++.+..
T Consensus 115 lV~NK~DL~~-~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 115 IVFNKIDLLN-EEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp EEECCGGGCC-HHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTT
T ss_pred EEEEcccCCC-ccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccC
Confidence 9999999972 22111 23444555667889999999999999999987653
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.26 E-value=1.6e-11 Score=110.14 Aligned_cols=102 Identities=16% Similarity=0.215 Sum_probs=62.6
Q ss_pred EEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD 232 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 232 (286)
.+.|+||||...-. ......+|.+++++|+..+...+.+... +. ..|.++++||+|+.. ........
T Consensus 149 ~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~-~~~~s~~~ 215 (337)
T 2qm8_A 149 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGD-GERRASAA 215 (337)
T ss_dssp CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTC-CHHHHHHH
T ss_pred CEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccC-chhHHHHH
Confidence 38899999975432 2335789999999998654322211111 11 235577889999752 11111111
Q ss_pred HHHHHHh----------cCCCEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 233 GQALAQS----------WGCPFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 233 ~~~~~~~----------~~~~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.+.+... +..+++.+||+++.|++++++.|.+...
T Consensus 216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 2223221 2467899999999999999999988765
No 210
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.19 E-value=9.6e-12 Score=107.60 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=73.2
Q ss_pred CCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHH---HHH-HHhCCCCCcEEEEEeC-CCCCCCCCCCCHHHH
Q psy10504 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKE---LIT-RVKGSERVPILLVANK-LDLASHQREVPTLDG 233 (286)
Q Consensus 159 tpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~---~i~-~~~~~~~~piivv~nK-~Dl~~~~~~~~~~~~ 233 (286)
.+||+..+.+|+.|++++|++|+|+|++|.+.++ .+..+. .+. ......++|++|++|| .|++.+ .+..+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A---ms~~EI 269 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR---MPCFYL 269 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB---CCHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC---CCHHHH
Confidence 4689999999999999999999999999987654 333222 222 2111248999999996 588632 222222
Q ss_pred HHHHH----hcCCCEEEEeCCCCCcHHHHHHHHHHHhhcCC
Q psy10504 234 QALAQ----SWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 234 ~~~~~----~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~~~ 270 (286)
..... ...+.+..|||++|+|+.+.++|+.+.+..+.
T Consensus 270 ~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 270 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 21111 12356899999999999999999999986543
No 211
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.16 E-value=4.6e-10 Score=102.19 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=63.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeE---------------EEEEEEeCCCccc-
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAP---------------CVLEILDTAGTEQ- 164 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~DtpG~~~- 164 (286)
...+|+++|++|+|||||+|+|.+... ...++.++.+.....+.+.+.. ..+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 468999999999999999999998653 4566666666667777776521 2478999999543
Q ss_pred ------chhhhhhcccCccEEEEEEECCC
Q psy10504 165 ------FASMRDLYIKNGQGFVVVYSLTN 187 (286)
Q Consensus 165 ------~~~~~~~~~~~~d~vilv~d~~~ 187 (286)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22233445688999999999864
No 212
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.10 E-value=6.2e-11 Score=107.81 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=52.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcC-CCccCCCccceEEEEEEECCe---------------EEEEEEEeCCCcccch
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCF-MEKYDPTIEDFYRKEIEVDKA---------------PCVLEILDTAGTEQFA 166 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~l~DtpG~~~~~ 166 (286)
...+|+++|.+|+|||||+|+|.+..+ ...++.++.+.....+.+++. ...+++|||||+..+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 457899999999999999999998755 334455555555555655543 2248999999988655
Q ss_pred h-------hhhhcccCccEEEEEEECCCcc
Q psy10504 167 S-------MRDLYIKNGQGFVVVYSLTNHH 189 (286)
Q Consensus 167 ~-------~~~~~~~~~d~vilv~d~~~~~ 189 (286)
. .+..+++.+|++++|+|+.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 4 3456789999999999998643
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.75 E-value=4.5e-09 Score=98.61 Aligned_cols=148 Identities=12% Similarity=0.157 Sum_probs=84.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHh------cCcC--CC--ccCCCc------------cceEEEE---------------E
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFV------SGCF--ME--KYDPTI------------EDFYRKE---------------I 145 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~------~~~~--~~--~~~~t~------------~~~~~~~---------------~ 145 (286)
+...|+++|++|+||||++++|. +... .. .+.+.. .+..... +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998 3221 00 111110 0000000 0
Q ss_pred EECCeEEEEEEEeCCCcccchh-hhhh---c--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcE-EEEEeC
Q psy10504 146 EVDKAPCVLEILDTAGTEQFAS-MRDL---Y--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPI-LLVANK 218 (286)
Q Consensus 146 ~~~~~~~~l~l~DtpG~~~~~~-~~~~---~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ivv~nK 218 (286)
...+ +.+.|+||||...... +... . +..+|.+++|+|+....... .....+.. .+|+ ++|+||
T Consensus 180 ~~~~--~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~-----~~~i~gvVlNK 249 (504)
T 2j37_W 180 KNEN--FEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD-----KVDVASVIVTK 249 (504)
T ss_dssp HHTT--CCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH-----HHCCCCEEEEC
T ss_pred HHCC--CcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh-----hcCceEEEEeC
Confidence 0023 3488999999753221 1111 1 22789999999998764321 12222222 2575 899999
Q ss_pred CCCCCCCCCCCHHHHHHHHHhcCCCE------------------EEEeCCCCCc-HHHHHHHHHHH
Q psy10504 219 LDLASHQREVPTLDGQALAQSWGCPF------------------IEASAKNKTN-VNEMFAEIVRE 265 (286)
Q Consensus 219 ~Dl~~~~~~~~~~~~~~~~~~~~~~~------------------~~vSa~~~~g-v~~l~~~i~~~ 265 (286)
+|...... .........+.|+ +.+|+..|.| +.++++++.+.
T Consensus 250 ~D~~~~~g-----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 250 LDGHAKGG-----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTSCCCCT-----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CccccchH-----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 99862211 1122333444443 3468999999 99999999876
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.73 E-value=1.8e-08 Score=91.24 Aligned_cols=97 Identities=19% Similarity=0.130 Sum_probs=73.3
Q ss_pred CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHH
Q psy10504 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QAL 236 (286)
Q Consensus 161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~ 236 (286)
..++|..+...+++.++++++|+|++|+. ..|...+.+.. .++|+++|+||+|+.+.. ...... ...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~--~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPKS--VKHDKVKHWMRYS 125 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCTT--SCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCcc--cCHHHHHHHHHHH
Confidence 45789999999999999999999999863 44555555542 378999999999997322 222222 233
Q ss_pred HHhcCC---CEEEEeCCCCCcHHHHHHHHHHHh
Q psy10504 237 AQSWGC---PFIEASAKNKTNVNEMFAEIVREM 266 (286)
Q Consensus 237 ~~~~~~---~~~~vSa~~~~gv~~l~~~i~~~i 266 (286)
.+..+. +++.+||++|.|++++++.|.+..
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 556676 799999999999999999998754
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.68 E-value=1.7e-09 Score=97.98 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=84.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC------cC-CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhh--------
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG------CF-MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASM-------- 168 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~-------- 168 (286)
..+|+++|.+|+|||||+|+|.+. .. ....++++.+.. .+.++.. +.++||||......+
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMI--EIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEE--EEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeE--EEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999975 22 334445544332 2333332 678999996432211
Q ss_pred hhhcc--cCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504 169 RDLYI--KNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE 246 (286)
Q Consensus 169 ~~~~~--~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (286)
...++ +..+.++++++.........+.. + ......+.|+++++||.|... +.......+.+.+..+..+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l-~~l~~~~~~~~~v~~k~d~~~--~~~~~~~~~~~~~~~g~~l~p 309 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----L-DYIKGGRRSFVCYMANELTVH--RTKLEKADSLYANQLGELLSP 309 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE--EEEGGGHHHHHHHHBTTTBCS
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----E-EEccCCCceEEEEecCCcccc--cccHHHHHHHHHHhcCCccCC
Confidence 11122 56789999998843211111111 0 001123689999999999862 222244456677778877666
Q ss_pred EeCCCCCcH
Q psy10504 247 ASAKNKTNV 255 (286)
Q Consensus 247 vSa~~~~gv 255 (286)
.++.+.+++
T Consensus 310 ~~~~~~~~~ 318 (369)
T 3ec1_A 310 PSKRYAAEF 318 (369)
T ss_dssp SCGGGTTTC
T ss_pred CCchhhhhc
Confidence 666655544
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.66 E-value=4e-07 Score=83.34 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=86.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCcc--c--eEEEEEEECCeEEEEEEEeCCCcccchh-----hhhhccc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE--D--FYRKEIEVDKAPCVLEILDTAGTEQFAS-----MRDLYIK 174 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~--~--~~~~~~~~~~~~~~l~l~DtpG~~~~~~-----~~~~~~~ 174 (286)
...++|+|++|+|||||+|.+.+-.....-.-+.. + ......+.. ....++++|++|...... +....+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~-~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecccc-ccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 45899999999999999999998322211100000 0 001122221 111378999998532111 1122234
Q ss_pred CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC--C----CCCCCCHHH----HHHHH----Hhc
Q psy10504 175 NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA--S----HQREVPTLD----GQALA----QSW 240 (286)
Q Consensus 175 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~--~----~~~~~~~~~----~~~~~----~~~ 240 (286)
..+..++ ++...+ .-+.+ .+...+.. .++|+++|.||.|+. + .-......+ ...+. ...
T Consensus 148 ~~~~~~~-lS~G~~-~kqrv-~la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRF-KKNDI-DIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCC-CHHHH-HHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCc-cHHHH-HHHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455554 666532 12222 22333333 268999999999963 0 111111222 22222 122
Q ss_pred C---CCEEEEeC--CCCCcHHHHHHHHHHHhhcCC
Q psy10504 241 G---CPFIEASA--KNKTNVNEMFAEIVREMNFNP 270 (286)
Q Consensus 241 ~---~~~~~vSa--~~~~gv~~l~~~i~~~i~~~~ 270 (286)
+ ..++.+|+ .++.|++++.+.|.+.+++.+
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 2 46788999 566779999999999987755
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.65 E-value=1.6e-08 Score=92.69 Aligned_cols=139 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCcc-----CCCccceEEEEEEECCeEEEEEEEeCCCcccc-------hh----
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEKY-----DPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF-------AS---- 167 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~-------~~---- 167 (286)
.++++|+|++|+|||||++.+.+..+.... +..............+....++++|++|.... ..
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 367999999999999999999986432211 11111222233333333346899999985321 10
Q ss_pred -------hhhhc---------ccCcc---EEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCC
Q psy10504 168 -------MRDLY---------IKNGQ---GFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREV 228 (286)
Q Consensus 168 -------~~~~~---------~~~~d---~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~ 228 (286)
....+ ..+++ +++++.|...+-+..++ .+.+.-. .++|+|+|+||+|... ..+.
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-----eilk~L~-~~~~vI~Vi~KtD~Lt-~~E~ 194 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-----VTMKKLD-SKVNIIPIIAKADAIS-KSEL 194 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-----HHHHHTC-SCSEEEEEESCGGGSC-HHHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-----HHHHHHh-hCCCEEEEEcchhccc-hHHH
Confidence 01111 12232 35666666654433332 2222222 4889999999999862 1111
Q ss_pred CHHHHHHH---HHhcCCCEEEEeCC
Q psy10504 229 PTLDGQAL---AQSWGCPFIEASAK 250 (286)
Q Consensus 229 ~~~~~~~~---~~~~~~~~~~vSa~ 250 (286)
. .....+ ....|++++.+|.-
T Consensus 195 ~-~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 T-KFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp H-HHHHHHHHHHBTTBCCCCCCC--
T ss_pred H-HHHHHHHHHHHHcCCcEEecCCC
Confidence 1 111112 22345777777753
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.62 E-value=3.4e-08 Score=86.14 Aligned_cols=101 Identities=13% Similarity=0.039 Sum_probs=69.6
Q ss_pred EEeCCCcc-cchhhhhhcccCccEEEEEEECCCcccHHH--HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHH
Q psy10504 156 ILDTAGTE-QFASMRDLYIKNGQGFVVVYSLTNHHTFQD--IKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLD 232 (286)
Q Consensus 156 l~DtpG~~-~~~~~~~~~~~~~d~vilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~ 232 (286)
+-+.|||. +........+..+|+++.|+|++++.+..+ +..++ .++|.++|+||+|+.+ .. ..+.
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~--~~-~~~~ 70 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKAD--AA-VTQQ 70 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSC--HH-HHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCC--HH-HHHH
Confidence 45689986 344556677899999999999999877653 33222 3789999999999973 11 1122
Q ss_pred HHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHHhhc
Q psy10504 233 GQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNF 268 (286)
Q Consensus 233 ~~~~~~~~~~~~~~vSa~~~~gv~~l~~~i~~~i~~ 268 (286)
...+.+..+.+++.+||+++.|++++++.+.+.+.+
T Consensus 71 ~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 71 WKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 233344557899999999999999999988887653
No 219
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.60 E-value=5.6e-08 Score=88.02 Aligned_cols=98 Identities=21% Similarity=0.214 Sum_probs=71.8
Q ss_pred CcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHH----HHH
Q psy10504 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDG----QAL 236 (286)
Q Consensus 161 G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~ 236 (286)
.+++|.++...+++.++++++|+|++|+.+ .|...+.+.. .++|+++|+||+|+.+.. ...... ...
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~~--~~~~~~~~~l~~~ 127 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPRS--VKYPKLLRWMRRM 127 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCTT--CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCCc--cCHHHHHHHHHHH
Confidence 478899999999999999999999999763 3333444332 378999999999997322 222222 223
Q ss_pred HHhcCC---CEEEEeCCCCCcHHHHHHHHHHHhh
Q psy10504 237 AQSWGC---PFIEASAKNKTNVNEMFAEIVREMN 267 (286)
Q Consensus 237 ~~~~~~---~~~~vSa~~~~gv~~l~~~i~~~i~ 267 (286)
.+..+. +++.+||++|.|++++++.+.+...
T Consensus 128 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 455665 6899999999999999999987653
No 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.56 E-value=2.7e-09 Score=96.63 Aligned_cols=134 Identities=16% Similarity=0.169 Sum_probs=76.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc------C--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcccchhhh-------
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC------F--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMR------- 169 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~------~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~~~~~~------- 169 (286)
.+|+++|.+|+|||||+|+|.+.. . ....++|+.+.. .+.+++. +.++||||......+.
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 579999999999999999998852 1 223344443322 2333333 6799999964332111
Q ss_pred -hhc--ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEE
Q psy10504 170 -DLY--IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIE 246 (286)
Q Consensus 170 -~~~--~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (286)
..+ ....+.++++++.........+.. + ......+.|+++++||.|... +.......+.+.+..+..+.+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~-d~l~~~~~~~~~v~nk~d~~~--~~~~~~~~~~~~~~~g~~l~p 308 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----F-DYVSGGRRAFTCHFSNRLTIH--RTKLEKADELYKNHAGDLLSP 308 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----E-EEEESSSEEEEEEECTTSCEE--EEEHHHHHHHHHHHBTTTBCS
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----E-EEecCCCceEEEEecCccccc--cccHHHHHHHHHHHhCCccCC
Confidence 111 356788889988743211111110 0 001123689999999999862 222344455666777766555
Q ss_pred EeCC
Q psy10504 247 ASAK 250 (286)
Q Consensus 247 vSa~ 250 (286)
.++.
T Consensus 309 ~~~~ 312 (368)
T 3h2y_A 309 PTPE 312 (368)
T ss_dssp SCHH
T ss_pred Cchh
Confidence 5543
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.51 E-value=3.7e-07 Score=79.02 Aligned_cols=113 Identities=22% Similarity=0.265 Sum_probs=61.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCcCCCc---------cCCCcc-ceEEEEEEECCeEEEEEEEeCCCcccc-------h
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGCFMEK---------YDPTIE-DFYRKEIEVDKAPCVLEILDTAGTEQF-------A 166 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~~~~~---------~~~t~~-~~~~~~~~~~~~~~~l~l~DtpG~~~~-------~ 166 (286)
.++++++|+.|+|||||++.+.+...... ...+.. .......+..+....++++|++|-... .
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 47899999999999999999997322111 111111 111222222222235899999983211 0
Q ss_pred hhh---------------------hhcccCccEEEEEEECC-CcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCC
Q psy10504 167 SMR---------------------DLYIKNGQGFVVVYSLT-NHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222 (286)
Q Consensus 167 ~~~---------------------~~~~~~~d~vilv~d~~-~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~ 222 (286)
.+. +..+..+++.++++|-. .+-...+ ...+..+.. .+++++|++|+|..
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-----~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-----VVNIIPVIAKADTM 153 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT-----TSEEEEEETTGGGS
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh-----cCcEEEEEeccccC
Confidence 000 01123367888888854 3333222 222223322 38999999999986
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.28 E-value=2.2e-06 Score=78.89 Aligned_cols=92 Identities=14% Similarity=0.114 Sum_probs=54.8
Q ss_pred EEEEEEeCCCcccchh-----hhh-hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-----MRD-LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-----~~~-~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||||...... +.. .....+|.+++|+|+..+... ......+... -.+..+|+||.|...
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~----~~i~gVIlTKlD~~~-- 253 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKEA----TPIGSIIVTKLDGSA-- 253 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHHS----CTTEEEEEECCSSCS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHhh----CCCeEEEEECCCCcc--
Confidence 4488999999443221 111 112357899999999875432 2222333321 235578999999861
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
............+.|+.+++. |+++++
T Consensus 254 ---~gG~~ls~~~~~g~PI~fig~--Ge~vdd 280 (443)
T 3dm5_A 254 ---KGGGALSAVAATGAPIKFIGT--GEKIDD 280 (443)
T ss_dssp ---SHHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred ---cccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence 122344555678899988885 666544
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.24 E-value=2.9e-07 Score=84.94 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccchh-hh-----hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCC-c-EEEEEeCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MR-----DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV-P-ILLVANKLDLAS 223 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~-----~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-p-iivv~nK~Dl~~ 223 (286)
+.+.++||||...... +. ...+..+|.+++|+|+..+. +..... .... +.+ | ..+|+||+|..
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~---~~~~--~~~~~i~gvVlnK~D~~- 251 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQA---KAFK--EAVGEIGSIIVTKLDGS- 251 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHH---HHHH--TTSCSCEEEEEECSSSC-
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHH---HHHh--hcccCCeEEEEeCCCCc-
Confidence 3478999999654321 11 11223689999999987653 222222 2221 145 6 78999999975
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEE
Q psy10504 224 HQREVPTLDGQALAQSWGCPFIEA 247 (286)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v 247 (286)
... .....+....+.|+..+
T Consensus 252 ~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 252 AKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp STT----HHHHHHHHHSSCCEEEE
T ss_pred cch----HHHHHHHHHHCCCEEEe
Confidence 111 12334566677776555
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.15 E-value=9.1e-07 Score=76.23 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=61.2
Q ss_pred CCCcccc-hhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHH
Q psy10504 159 TAGTEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALA 237 (286)
Q Consensus 159 tpG~~~~-~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~ 237 (286)
.|||... .......+..+|+++.|+|+++|.+..... +. + . ++|.++|+||+|+.+. . .......+.
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~-~--~~~~~~~~~ 71 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADE-K--TTKKWVEFF 71 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCH-H--HHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCH-H--HHHHHHHHH
Confidence 5787633 234566788999999999999987654321 01 1 1 6899999999999731 1 112223334
Q ss_pred HhcCCCEEEEeCCCCCcHHHHHHHHHH
Q psy10504 238 QSWGCPFIEASAKNKTNVNEMFAEIVR 264 (286)
Q Consensus 238 ~~~~~~~~~vSa~~~~gv~~l~~~i~~ 264 (286)
+..+.++ .+||+++.|++++++.+..
T Consensus 72 ~~~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcCCeE-EEECCCCcCHHHHHHHHHH
Confidence 4567888 9999999999999887654
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.14 E-value=2.4e-06 Score=74.41 Aligned_cols=57 Identities=25% Similarity=0.317 Sum_probs=35.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcC--CCccCCCccceEEEEEEECCeEEEEEEEeCCCcc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTE 163 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~ 163 (286)
...++|+++|.+|+|||||+|++.+... +...++++.+.. .+..+ .. +.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVG-KE--LELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEET-TT--EEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeC-CC--EEEEECcCcC
Confidence 3568999999999999999999998653 333344443332 22333 23 7899999964
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.03 E-value=1.9e-06 Score=74.18 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=35.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCcCC--CccCCCccceEEEEEEECCeEEEEEEEeCCCccc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGCFM--EKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~l~DtpG~~~ 164 (286)
++++++|.+|+|||||+|+|.+.... ...++++.... .+..+ .. +.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~~-~~--~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSLE-NG--VKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEECT-TS--CEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEeC-CC--EEEEECCCccc
Confidence 79999999999999999999986542 22223322221 22222 23 78999999764
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.97 E-value=7.6e-06 Score=78.07 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=39.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEEEEEE-------ECCeEEEEEEEeCCCccc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIE-------VDKAPCVLEILDTAGTEQ 164 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~~l~l~DtpG~~~ 164 (286)
+..+|+|+|.+|+|||||+|+|.+....-...+++.+.....+. ..+.. +.++||||...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~--i~LiDTpGi~~ 103 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHI--LVLLDTEGLGD 103 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCE--EEEEEECCBCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCce--EEEecCCCcCc
Confidence 56889999999999999999999865321333333221111111 12334 88999999654
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.90 E-value=1e-05 Score=74.37 Aligned_cols=90 Identities=11% Similarity=0.056 Sum_probs=53.6
Q ss_pred EEEEEEeCCCccc--chh-hh---hh--cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCC
Q psy10504 152 CVLEILDTAGTEQ--FAS-MR---DL--YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLAS 223 (286)
Q Consensus 152 ~~l~l~DtpG~~~--~~~-~~---~~--~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 223 (286)
+.+.++||||... ... +. .. .....+.+++|+|+.......+ ....+... -.+..+|+||.|..
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~----~~~~gVIlTKlD~~- 251 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA----SPIGSVIITKMDGT- 251 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH----CSSEEEEEECGGGC-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc----cCCcEEEEeccccc-
Confidence 3477999999543 111 11 11 1124689999999987543322 22333331 23578899999975
Q ss_pred CCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcH
Q psy10504 224 HQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255 (286)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv 255 (286)
. ............+.|+.+++. |+++
T Consensus 252 a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 252 A----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp S----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred c----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 1 123345555667899988885 6665
No 229
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.90 E-value=1.6e-05 Score=69.68 Aligned_cols=92 Identities=12% Similarity=0.104 Sum_probs=57.1
Q ss_pred EEEEEEeCCCccc--chh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCC
Q psy10504 152 CVLEILDTAGTEQ--FAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLA 222 (286)
Q Consensus 152 ~~l~l~DtpG~~~--~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~ 222 (286)
+.+.++||||... ... +.. .....+|.+++|+|+... ++.......+.. ..| ..+|+||.|..
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMDGT 252 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGGGC
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCCCC
Confidence 3488999999765 321 211 123468999999998753 222222222222 356 67889999975
Q ss_pred CCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
. .......+....+.|+..++ +|++++++
T Consensus 253 ~-----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 253 A-----KGGGALSAVAATGATIKFIG--TGEKIDEL 281 (297)
T ss_dssp T-----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred c-----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence 1 12344566777889998887 67776543
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.82 E-value=4.9e-06 Score=73.22 Aligned_cols=91 Identities=14% Similarity=0.159 Sum_probs=59.8
Q ss_pred hhhhhhcccCccEEEEEEECCCcccHHH-HHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC-CCHHHHHHHHHhcCCC
Q psy10504 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQD-IKQMKELITRVKGSERVPILLVANKLDLASHQRE-VPTLDGQALAQSWGCP 243 (286)
Q Consensus 166 ~~~~~~~~~~~d~vilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~ 243 (286)
..+.+..+.++|.+++|+|+.+|..-.+ +..++.... ..++|.++|+||+|+.+.... ..........+..|.+
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~ 152 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD 152 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence 3445567899999999999998764443 232222222 238899999999999732110 0012233344456789
Q ss_pred EEEEeCCCCCcHHHHHH
Q psy10504 244 FIEASAKNKTNVNEMFA 260 (286)
Q Consensus 244 ~~~vSa~~~~gv~~l~~ 260 (286)
++.+||+++.|++++++
T Consensus 153 v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIP 169 (307)
T ss_dssp EEECCHHHHTTCTTTGG
T ss_pred EEEEecCCCCCHHHHHh
Confidence 99999999999887655
No 231
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.73 E-value=7.7e-05 Score=71.72 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
.++|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 39999999999999999999853
No 232
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.68 E-value=8.8e-05 Score=66.49 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=55.2
Q ss_pred hcccCccEEEEEEECCCcccH-HHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeC
Q psy10504 171 LYIKNGQGFVVVYSLTNHHTF-QDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASA 249 (286)
Q Consensus 171 ~~~~~~d~vilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa 249 (286)
....++|.+++|.+. +|... ..+..++..... .++|.++|+||+|+.+.................|.+++.+||
T Consensus 126 ~i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa 200 (358)
T 2rcn_A 126 PIAANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSS 200 (358)
T ss_dssp EEEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBT
T ss_pred HHHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEec
Confidence 356889999988665 45433 333333333222 278889999999997321100011222333457889999999
Q ss_pred CCCCcHHHHHHHH
Q psy10504 250 KNKTNVNEMFAEI 262 (286)
Q Consensus 250 ~~~~gv~~l~~~i 262 (286)
+++.|++++...+
T Consensus 201 ~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 201 HTQDGLKPLEEAL 213 (358)
T ss_dssp TTTBTHHHHHHHH
T ss_pred CCCcCHHHHHHhc
Confidence 9999999987643
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.50 E-value=9.8e-05 Score=65.50 Aligned_cols=91 Identities=13% Similarity=0.129 Sum_probs=53.2
Q ss_pred EEEEeCCCcccchhh-hhh-----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCCCC
Q psy10504 154 LEILDTAGTEQFASM-RDL-----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQRE 227 (286)
Q Consensus 154 l~l~DtpG~~~~~~~-~~~-----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~ 227 (286)
+.++||+|....... ... ..-..|-.+++.|+.... ++......+.... + ..++++||.|.. . +
T Consensus 214 ~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~---~-it~iilTKlD~~-a-~- 283 (328)
T 3e70_C 214 VVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV---K-IDGIILTKLDAD-A-R- 283 (328)
T ss_dssp EEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS---C-CCEEEEECGGGC-S-C-
T ss_pred hhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc---C-CCEEEEeCcCCc-c-c-
Confidence 567999996432221 111 112368889999976543 3333333443311 2 337788999964 1 1
Q ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCCcHHHH
Q psy10504 228 VPTLDGQALAQSWGCPFIEASAKNKTNVNEM 258 (286)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~l 258 (286)
.-.........+.|+..++ +|++++++
T Consensus 284 --~G~~l~~~~~~~~pi~~i~--~Ge~v~dl 310 (328)
T 3e70_C 284 --GGAALSISYVIDAPILFVG--VGQGYDDL 310 (328)
T ss_dssp --CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred --hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence 2234566677889998888 77776543
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.40 E-value=1e-05 Score=75.41 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=62.9
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcCcCCCccCCCccceEE--EEEEECCeEEEEEEEeCCCccc--chhhh--------
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYR--KEIEVDKAPCVLEILDTAGTEQ--FASMR-------- 169 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~l~l~DtpG~~~--~~~~~-------- 169 (286)
....+|+++|.+|+||||+.++|........ .++.. +.. ......+......+||..|.+. ....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~-~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTRE-FNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEE-EEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceE-EecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999976422110 01100 000 0000011111245799999732 23333
Q ss_pred hhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEe
Q psy10504 170 DLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217 (286)
Q Consensus 170 ~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~n 217 (286)
..++..+++.++|+|+++. +.+....|...+... +.+++.+-.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~----~~~vv~l~~ 157 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN----GYKTFFVES 157 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH----TCEEEEEEE
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc----CCcEEEEEE
Confidence 4566678899999999987 566666666665553 345554443
No 235
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.07 E-value=0.00063 Score=62.72 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+-.-|+|+|.+++|||+|+|+|++
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHhh
Confidence 456789999999999999999985
No 236
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.02 E-value=0.0019 Score=59.36 Aligned_cols=83 Identities=17% Similarity=0.114 Sum_probs=46.5
Q ss_pred EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~ 224 (286)
+.+.++||||...... +.. .....++.+++|+|+..... .......+.. .++ .-+|+||.|....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~---~~~~~~~f~~-----~l~i~gvVlnK~D~~~~ 255 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQD---AANTAKAFNE-----ALPLTGVVLTKVDGDAR 255 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTT---HHHHHHHHHH-----HSCCCCEEEECTTSSSC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHH---HHHHHHHHhc-----cCCCeEEEEecCCCCcc
Confidence 3488999999654321 211 12346889999999975432 2222222222 344 3478999997521
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEE
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEA 247 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~v 247 (286)
. .....+....+.|+..+
T Consensus 256 ~-----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 256 G-----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp C-----THHHHHHHHHCCCEEEE
T ss_pred H-----HHHHHHHHHHCCCeEEE
Confidence 1 12334555567665544
No 237
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.43 E-value=0.0012 Score=57.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++++|++|+|||||+|.+.+.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 47899999999999999999874
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.41 E-value=0.0017 Score=52.17 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998874
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.34 E-value=0.0041 Score=56.97 Aligned_cols=84 Identities=21% Similarity=0.169 Sum_probs=47.8
Q ss_pred EEEEEEeCCCcccchh-hhh-----hcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCc-EEEEEeCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS-MRD-----LYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP-ILLVANKLDLASH 224 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~-~~~-----~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iivv~nK~Dl~~~ 224 (286)
+.+.++||||...... +.. ...-.++.+++|+|+... ++.......+.. ..+ .-+|+||.|...
T Consensus 181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~-----~l~i~GVIlTKlD~~~- 251 (425)
T 2ffh_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDE-----KVGVTGLVLTKLDGDA- 251 (425)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHH-----HTCCCEEEEESGGGCS-
T ss_pred CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHh-----cCCceEEEEeCcCCcc-
Confidence 3478999999653321 111 112257889999998643 222222223322 223 467889999641
Q ss_pred CCCCCHHHHHHHHHhcCCCEEEEe
Q psy10504 225 QREVPTLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~vS 248 (286)
+ ...........+.|+.++.
T Consensus 252 -~---~g~alsi~~~~g~PI~flg 271 (425)
T 2ffh_A 252 -R---GGAALSARHVTGKPIYFAG 271 (425)
T ss_dssp -S---CHHHHHHHHHHCCCEEEEE
T ss_pred -c---HHHHHHHHHHHCCCEEEEe
Confidence 1 1234445667788887776
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0023 Score=51.27 Aligned_cols=23 Identities=26% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|+|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46899999999999999999863
No 241
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.29 E-value=0.0077 Score=52.53 Aligned_cols=22 Identities=32% Similarity=0.641 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHh
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
.-.++++|++|+|||||+|.+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3468999999999999999998
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.20 E-value=0.0023 Score=52.14 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 243
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.18 E-value=0.0029 Score=51.75 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=22.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
++++.--|+|+|++|+|||||+++|...
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3445567899999999999999999863
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.08 E-value=0.0029 Score=51.29 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--++++|++|||||||++.+.+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.05 E-value=0.003 Score=50.81 Aligned_cols=20 Identities=35% Similarity=0.664 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy10504 107 VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~ 126 (286)
++|+|++|||||||++.+.+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999986
No 246
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.0037 Score=51.21 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+|+|++|+|||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988763
No 247
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.95 E-value=0.0035 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--++|+|+.|||||||++.+.+-
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35889999999999999999874
No 248
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.91 E-value=0.0037 Score=49.65 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=18.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
--++++|++|||||||++.+..
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHcc
Confidence 4588999999999999997543
No 249
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.90 E-value=0.0048 Score=49.41 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++++|++|+||||+++.+.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999875
No 250
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.88 E-value=0.004 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.--++|+|++|||||||++.+.+.
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 346889999999999999999874
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.004 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.676 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|+|++|+|||||++.+.+.
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999873
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.75 E-value=0.0048 Score=50.55 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.--|+|+|++||||||+++.|...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 346899999999999999999874
No 253
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.71 E-value=0.0053 Score=48.31 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
-.++++|+.|+|||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998754
No 254
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.68 E-value=0.0059 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
|+|+|++|||||||+++|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999763
No 255
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.66 E-value=0.0056 Score=51.42 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|||||||++.+.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35899999999999999998764
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.65 E-value=0.0063 Score=49.28 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=21.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998753
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.62 E-value=0.006 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+++|++||||||+.+.|.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999876
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.62 E-value=0.0064 Score=49.62 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|+|+.|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998876
No 259
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.62 E-value=0.0088 Score=47.20 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=20.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
....|+++|++|+||||+.+.+.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 260
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.56 E-value=0.0087 Score=48.46 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=22.5
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+.....|+|.|.+|+||||+.+.|..
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344556899999999999999998865
No 261
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.51 E-value=0.0063 Score=50.69 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998764
No 262
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.51 E-value=0.0074 Score=50.88 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 263
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.50 E-value=0.0077 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcCc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
-.++++|++|+|||||+|.|.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 468999999999999999999854
No 264
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.49 E-value=0.0069 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 265
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.49 E-value=0.0078 Score=47.00 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.4
Q ss_pred EEEEEECCCCCcHHHHHHHH
Q psy10504 105 FKVVVLGSGGVGKSALTVQF 124 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l 124 (286)
.-|++.|.+||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 35899999999999999999
No 266
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.47 E-value=0.0084 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHh
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
...|+|+|++||||||+++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 267
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.46 E-value=0.0072 Score=49.23 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-|+|+|++||||||+.+.|...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999763
No 268
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.44 E-value=0.0086 Score=47.72 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.43 E-value=0.0074 Score=47.24 Aligned_cols=21 Identities=14% Similarity=0.226 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 270
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.40 E-value=0.0078 Score=48.86 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|+|++|+||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 271
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.40 E-value=0.0078 Score=51.40 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 272
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.39 E-value=0.0082 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 273
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.38 E-value=0.011 Score=46.68 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 274
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.38 E-value=0.0087 Score=50.27 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 275
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.37 E-value=0.011 Score=47.27 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=20.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|++.|.+||||||+.+.|..
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999988864
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=95.36 E-value=0.0081 Score=51.70 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 277
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.35 E-value=0.0092 Score=50.30 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 278
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.33 E-value=0.012 Score=47.75 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 279
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=95.32 E-value=0.0085 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999874
No 280
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.32 E-value=0.012 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+++|.+||||||+.+.|..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 281
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.32 E-value=0.0077 Score=48.80 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4889999999999999998873
No 282
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=95.31 E-value=0.0087 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35889999999999999999874
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.31 E-value=0.0094 Score=50.41 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998774
No 284
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=95.29 E-value=0.0099 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 285
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.28 E-value=0.0093 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++++|++|+|||||++.+.+-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.28 E-value=0.016 Score=46.87 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|.|.+||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999988864
No 287
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.26 E-value=0.011 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-|++.|.+||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999876
No 288
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.24 E-value=0.0093 Score=50.18 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 289
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=95.24 E-value=0.0094 Score=50.95 Aligned_cols=22 Identities=36% Similarity=0.403 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5889999999999999998874
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=95.21 E-value=0.01 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.20 E-value=0.0099 Score=50.60 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 292
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=95.18 E-value=0.011 Score=50.44 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36899999999999999999874
No 293
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=95.16 E-value=0.01 Score=50.25 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5899999999999999998774
No 294
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.16 E-value=0.0085 Score=47.61 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++++|++|+|||||++.+.+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 295
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=95.14 E-value=0.011 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 296
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.13 E-value=0.011 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.=.++|+|++|+|||||++.+.+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhh
Confidence 34799999999999999999875
No 297
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.12 E-value=0.01 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-.++|+|+.|+|||||++.+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHH
Confidence 34689999999999999999876
No 298
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=95.12 E-value=0.012 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999874
No 299
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.11 E-value=0.013 Score=51.34 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...-|+|+|++|||||||++.+.+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHh
Confidence 557899999999999999998876
No 300
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.10 E-value=0.011 Score=47.19 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..++++|++|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 46889999999999999999864
No 301
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.10 E-value=0.014 Score=46.74 Aligned_cols=25 Identities=16% Similarity=0.505 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+++|.+|+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4467999999999999999988653
No 302
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.10 E-value=0.011 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
=-++++|++|+|||||++.+..
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999998873
No 303
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.10 E-value=0.011 Score=47.95 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+|.|.+||||||+.+.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.09 E-value=0.014 Score=47.32 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 305
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.08 E-value=0.012 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.08 E-value=0.012 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.|+++|.+||||||+.+.|..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4799999999999999998874
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=95.08 E-value=0.012 Score=50.49 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.07 E-value=0.014 Score=47.24 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+++|++|+||||+.+.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988763
No 309
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.05 E-value=0.011 Score=51.59 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++++|++|+|||||++.+.+.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTT
T ss_pred CeEEEECCCCCcHHHHHHHhccc
Confidence 46899999999999999999874
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.05 E-value=0.0076 Score=50.07 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=15.5
Q ss_pred EEEEEECCCCCcHHHHHHHHh-cC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFV-SG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~-~~ 127 (286)
--++|+|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 468999999999999999998 53
No 311
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.05 E-value=0.012 Score=48.32 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+|+|++|+||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 312
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.04 E-value=0.011 Score=47.91 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999876
No 313
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.03 E-value=0.013 Score=47.99 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|+|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 314
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.03 E-value=0.015 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999998865
No 315
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.02 E-value=0.012 Score=50.01 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999874
No 316
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.02 E-value=0.012 Score=50.39 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6889999999999999998874
No 317
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.01 E-value=0.0089 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999874
No 318
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.01 E-value=0.017 Score=46.90 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+|+|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999874
No 319
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.00 E-value=0.013 Score=47.09 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998876
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.99 E-value=0.015 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|+|+.|||||||++.+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998876
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.95 E-value=0.015 Score=46.30 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 322
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.94 E-value=0.011 Score=48.53 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--++|+|++|+|||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 323
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.93 E-value=0.0076 Score=48.05 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|++|+|||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998873
No 324
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.92 E-value=0.02 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+++|.+|+||||+.+.+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 325
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.91 E-value=0.015 Score=49.74 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGC 128 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~ 128 (286)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
No 326
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.89 E-value=0.016 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=22.4
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+...|+|.|.+||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35578999999999999999998764
No 327
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.84 E-value=0.059 Score=41.16 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=20.1
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..|++.|++|+|||++.+.+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCEEEECCCCCCHHHHHHHHHHh
Confidence 34899999999999999998764
No 328
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.83 E-value=0.017 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|+|.+|+||||+.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999988865
No 329
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.81 E-value=0.02 Score=48.12 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.2
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|.|.+||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 330
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.81 E-value=0.012 Score=51.41 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++|+|+.|+|||||++.+.+-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347899999999999999988763
No 331
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.81 E-value=0.014 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-+++|+|++|+|||||++.+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 332
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.74 E-value=0.018 Score=46.48 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
...|+|.|.+||||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 333
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.74 E-value=0.018 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|+|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999988865
No 334
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.73 E-value=0.02 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|.|++|+|||||++.+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999887764
No 335
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.68 E-value=0.012 Score=46.72 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=16.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999864
No 336
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.67 E-value=0.019 Score=45.64 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 337
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.66 E-value=0.02 Score=46.44 Aligned_cols=24 Identities=21% Similarity=0.257 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+++|.+|+||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998865
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.64 E-value=0.022 Score=50.16 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..+-|+|+|++|||||||++.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988864
No 339
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.60 E-value=0.02 Score=45.35 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|++.|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999998874
No 340
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.59 E-value=0.025 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.0
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346799999999999999999875
No 341
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.54 E-value=0.018 Score=49.94 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999998874
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.53 E-value=0.02 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|++.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988864
No 343
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.52 E-value=0.017 Score=51.58 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++++|+.|+|||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
No 344
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.51 E-value=0.019 Score=47.03 Aligned_cols=21 Identities=19% Similarity=0.416 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 345
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.51 E-value=0.021 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+++|+|||||+|...+|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999888875
No 346
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.51 E-value=0.022 Score=49.70 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+|+|++|+|||||++.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998876
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.48 E-value=0.02 Score=47.35 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 348
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.47 E-value=0.02 Score=51.12 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++++|+.|+|||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999874
No 349
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.45 E-value=0.023 Score=44.33 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 350
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.44 E-value=0.013 Score=45.54 Aligned_cols=24 Identities=33% Similarity=0.418 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++++|++|+|||+|++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999999874
No 351
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.44 E-value=0.027 Score=46.68 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.3
Q ss_pred ceEE-EEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFK-VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~k-V~ivG~~~~GKTSLi~~l~~ 126 (286)
+..| |+|+|+|||||+|....|..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3444 56799999999999888875
No 352
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=49.21 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy10504 107 VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~ 126 (286)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999986
No 353
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=94.43 E-value=0.021 Score=51.13 Aligned_cols=23 Identities=30% Similarity=0.218 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=-++|+|+.|+|||||++.+.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 35789999999999999999874
No 354
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.42 E-value=0.021 Score=51.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 5789999999999999999874
No 355
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.40 E-value=0.025 Score=48.82 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+..-|++.|++||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999964
No 356
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.40 E-value=0.027 Score=44.61 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+...|+++|.+|+||||+.+.|..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999998876
No 357
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.40 E-value=0.021 Score=51.05 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 5789999999999999999874
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.37 E-value=0.023 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999875
No 359
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.36 E-value=0.021 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+|+|+|.+|+||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999988865
No 360
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.35 E-value=0.021 Score=47.98 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 361
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.35 E-value=0.02 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.++|+|++|+|||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 362
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.33 E-value=0.025 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..++++|.+|+|||||+.++..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999876
No 363
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.31 E-value=0.023 Score=51.18 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 5789999999999999999874
No 364
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=94.30 E-value=0.023 Score=51.10 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++++|+.|+|||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCcHHHHHHHHHHcC
Confidence 5789999999999999999874
No 365
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.30 E-value=0.023 Score=44.65 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988764
No 366
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.29 E-value=0.023 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 5789999999999999999873
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.29 E-value=0.026 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=22.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+..-|+|.|..||||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 35567999999999999999988764
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.26 E-value=0.027 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
....|+|+|++||||||+++.+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.21 E-value=0.02 Score=51.01 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++++|+.|+|||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5889999999999999999874
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.21 E-value=0.023 Score=49.63 Aligned_cols=90 Identities=11% Similarity=0.048 Sum_probs=50.6
Q ss_pred EEEEeCCCcccchh------------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 154 LEILDTAGTEQFAS------------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 154 l~l~DtpG~~~~~~------------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
+.++||+|...... +.+......+.++++.|+..... +......+.... ++ .++++||.|.
T Consensus 187 ~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~---~~~~~~~~~~~~---~~-t~iivTh~d~ 259 (304)
T 1rj9_A 187 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN---GLEQAKKFHEAV---GL-TGVIVTKLDG 259 (304)
T ss_dssp EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH---HHHHHHHHHHHH---CC-SEEEEECTTS
T ss_pred EEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH---HHHHHHHHHHHc---CC-cEEEEECCcc
Confidence 56899999542211 11123345778889999876542 222233333321 22 4778899986
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
. . +. -....+....+.|+..++ .|+++++
T Consensus 260 ~-a-~g---g~~l~i~~~~~~pi~~ig--~Ge~~~d 288 (304)
T 1rj9_A 260 T-A-KG---GVLIPIVRTLKVPIKFVG--VGEGPDD 288 (304)
T ss_dssp S-C-CC---TTHHHHHHHHCCCEEEEE--CSSSTTC
T ss_pred c-c-cc---cHHHHHHHHHCCCeEEEe--CCCChhh
Confidence 4 2 11 123455666788888886 5555443
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.20 E-value=0.02 Score=47.04 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+|+|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998865
No 372
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.18 E-value=0.011 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999875
No 373
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.17 E-value=0.025 Score=45.27 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 374
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.14 E-value=0.027 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.3
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|+|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999988865
No 375
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.14 E-value=0.023 Score=50.81 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|+|+.|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 376
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.13 E-value=0.027 Score=44.85 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 377
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.12 E-value=0.024 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=19.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|++.|.+||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988865
No 378
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.10 E-value=0.026 Score=47.78 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-|+|+|++|||||||...|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
No 379
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.08 E-value=0.034 Score=45.52 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999865
No 380
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.08 E-value=0.14 Score=44.95 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy10504 107 VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~ 126 (286)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998877
No 381
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.04 E-value=0.031 Score=46.18 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 382
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.01 E-value=0.029 Score=45.90 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.00 E-value=0.027 Score=49.09 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..-.++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999998876
No 384
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.99 E-value=0.029 Score=47.27 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=20.9
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
....|+++|.+||||||+.+.|..
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998865
No 385
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.97 E-value=0.028 Score=50.48 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-.++|+|++|+||||+++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999986
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.95 E-value=0.037 Score=46.86 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|++.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999998875
No 387
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.94 E-value=0.041 Score=43.64 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|++.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999988864
No 388
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.93 E-value=0.032 Score=43.63 Aligned_cols=21 Identities=14% Similarity=0.460 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999888865
No 389
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.93 E-value=0.029 Score=44.39 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.+|+|+.|+|||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999999865
No 390
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.90 E-value=0.07 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=21.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+...|+|.|.+||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998863
No 391
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.89 E-value=0.028 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999999873
No 392
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.87 E-value=0.03 Score=47.84 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
++++|++|+|||||++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999999864
No 393
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.85 E-value=0.085 Score=40.20 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.|++.|++|+|||++.+.+...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCT
T ss_pred cEEEECCCCccHHHHHHHHHHh
Confidence 4899999999999998887653
No 394
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.85 E-value=0.019 Score=51.15 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999874
No 395
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.79 E-value=0.11 Score=47.78 Aligned_cols=23 Identities=30% Similarity=0.199 Sum_probs=19.3
Q ss_pred ceEEEEEECCCCCcHHHHHHHHh
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
+-.-|.|+|..++|||+|+|.++
T Consensus 66 ~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCchhHHHHHHH
Confidence 44567799999999999999664
No 396
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.75 E-value=0.03 Score=50.60 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 35899999999999999999873
No 397
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.72 E-value=0.23 Score=43.50 Aligned_cols=24 Identities=8% Similarity=0.005 Sum_probs=21.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
...+.|.|+||+|||++++.+...
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999998864
No 398
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.72 E-value=0.041 Score=46.26 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+.+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988865
No 399
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.70 E-value=0.037 Score=43.85 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|+|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 400
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=93.70 E-value=0.031 Score=50.98 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=-++|+|+.|+|||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999873
No 401
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=93.60 E-value=0.052 Score=45.14 Aligned_cols=25 Identities=16% Similarity=0.209 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+..-|+|.|.+|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4577999999999999999998763
No 402
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.58 E-value=2.3 Score=36.97 Aligned_cols=84 Identities=12% Similarity=0.115 Sum_probs=50.1
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCCCH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREVPT 230 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~ 230 (286)
+.+.++|+|+....... ...+..+|.++++...+ ..+++.+......+.......+.++. +|.|..+..
T Consensus 164 ~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e-~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------- 233 (314)
T 3fwy_A 164 TDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------- 233 (314)
T ss_dssp CSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------
T ss_pred CceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc-HHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch--------
Confidence 34677888875433322 23356789888888653 55666777666666654444455553 566876543
Q ss_pred HHHHHHHHhcCCCEE
Q psy10504 231 LDGQALAQSWGCPFI 245 (286)
Q Consensus 231 ~~~~~~~~~~~~~~~ 245 (286)
.+.+.+++.++.+++
T Consensus 234 ~~v~~~a~~~~~~~l 248 (314)
T 3fwy_A 234 DEVDRFCKETNFRRL 248 (314)
T ss_dssp HHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHhCCeEE
Confidence 234556666665544
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.56 E-value=0.041 Score=46.09 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..+.|+|.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998864
No 404
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.53 E-value=0.049 Score=44.42 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|++.|.+|+||||+.+.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.49 E-value=0.03 Score=43.95 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999999988764
No 406
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.49 E-value=0.034 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|+|++||||||+++.+.+-
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35999999999999999999874
No 407
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.47 E-value=0.16 Score=45.23 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=18.4
Q ss_pred eEEEEEECCCCCcHHHHHHHHh
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
.+ .+|+|+.|+|||||+++++
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 44 5699999999999999987
No 408
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.46 E-value=0.034 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999988764
No 409
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.41 E-value=0.048 Score=42.17 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.+|+|+.|+||||+++++.-
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999863
No 410
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.41 E-value=0.04 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
--++++|++|+|||||+..+..
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999986
No 411
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.38 E-value=0.041 Score=45.17 Aligned_cols=24 Identities=13% Similarity=0.124 Sum_probs=20.7
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
...+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988763
No 412
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=93.37 E-value=0.041 Score=46.23 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+++.|++|+|||+|++.+.+.
T Consensus 47 ~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4999999999999999999763
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.36 E-value=0.042 Score=45.42 Aligned_cols=23 Identities=13% Similarity=0.130 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--++|+|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999874
No 414
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.32 E-value=0.052 Score=42.36 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999888865
No 415
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.31 E-value=0.048 Score=45.35 Aligned_cols=26 Identities=19% Similarity=0.403 Sum_probs=21.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+.+...|+|+|.+|+||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988875
No 416
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.29 E-value=0.044 Score=44.15 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988764
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.24 E-value=0.042 Score=48.84 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=+++|+|+.|+|||||++.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999885
No 418
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.23 E-value=0.043 Score=49.01 Aligned_cols=90 Identities=13% Similarity=0.084 Sum_probs=48.6
Q ss_pred EEEEeCCCcccchh------------hhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCC
Q psy10504 154 LEILDTAGTEQFAS------------MRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221 (286)
Q Consensus 154 l~l~DtpG~~~~~~------------~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl 221 (286)
..++|+.|...... +........+-+++++|.+... +.. .....+.... ++. ++++||.|.
T Consensus 243 ~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttgl--D~~-~~~~~~~~~~---g~t-~iiiThlD~ 315 (359)
T 2og2_A 243 VVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGL--NML-PQAREFNEVV---GIT-GLILTKLDG 315 (359)
T ss_dssp EEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGG--GGH-HHHHHHHHHT---CCC-EEEEESCTT
T ss_pred HHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCC--CHH-HHHHHHHHhc---CCe-EEEEecCcc
Confidence 56899999653321 1112335567788999955432 112 2222332211 333 677899885
Q ss_pred CCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
. . .--....+....+.|+..+. +|+.+++
T Consensus 316 ~--~---~gG~~lsi~~~~~~pI~~ig--~Ge~~~D 344 (359)
T 2og2_A 316 S--A---RGGCVVSVVEELGIPVKFIG--VGEAVED 344 (359)
T ss_dssp C--S---CTHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred c--c---cccHHHHHHHHhCCCEEEEe--CCCChHh
Confidence 4 1 12334556667788888776 4444443
No 419
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.14 E-value=0.11 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...-|+++|.+||||||+.++|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999876
No 420
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.14 E-value=0.064 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+..|++.|.+||||||+.+.|..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 568899999999999999888865
No 421
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.09 E-value=0.04 Score=50.92 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-.++|+|+.|+|||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 457999999999999999999873
No 422
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.98 E-value=0.048 Score=50.73 Aligned_cols=141 Identities=14% Similarity=0.145 Sum_probs=74.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC------cC-C-CccCCCc-----------cceEEEEEEECC--------------
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG------CF-M-EKYDPTI-----------EDFYRKEIEVDK-------------- 149 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~------~~-~-~~~~~t~-----------~~~~~~~~~~~~-------------- 149 (286)
..-.++|+|..|+|||||++.|.+. .+ . ....... ...........+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 4467899999999999999998751 11 0 0000000 000011111000
Q ss_pred --eEEEEEEEeCCCcccchh-h----h--hh----c-ccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEE
Q psy10504 150 --APCVLEILDTAGTEQFAS-M----R--DL----Y-IKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLV 215 (286)
Q Consensus 150 --~~~~l~l~DtpG~~~~~~-~----~--~~----~-~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv 215 (286)
..+.+.++||+|...... + . .. + ....+-++||+|+..+. +.......+.... ++. .++
T Consensus 372 ~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq---~al~~ak~f~~~~---~it-gvI 444 (503)
T 2yhs_A 372 KARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ---NAVSQAKLFHEAV---GLT-GIT 444 (503)
T ss_dssp HHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH---HHHHHHHHHHHHT---CCS-EEE
T ss_pred HhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH---HHHHHHHHHHhhc---CCC-EEE
Confidence 112367899999642221 1 1 11 1 12256789999977542 2222223333311 333 567
Q ss_pred EeCCCCCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 216 ANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 216 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
+||.|.. .+ .-....+....+.|+.++. +|+++++
T Consensus 445 lTKLD~t--ak---gG~~lsi~~~~~~PI~fig--~Ge~vdD 479 (503)
T 2yhs_A 445 LTKLDGT--AK---GGVIFSVADQFGIPIRYIG--VGERIED 479 (503)
T ss_dssp EECGGGC--SC---CTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred EEcCCCc--cc---ccHHHHHHHHHCCCEEEEe--cCCChhh
Confidence 8999963 11 2235566677788888765 6666654
No 423
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.90 E-value=0.045 Score=47.92 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-++|+|..|||||||++.+.+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 45789999999999999999964
No 424
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.85 E-value=0.17 Score=40.56 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=48.3
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhC-CCCCcEEEEEeCCCCC
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDLA 222 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~ 222 (286)
+.+.++|+|+.. .......+..+|.+++++..+.. + ..+..+...+..... .++.++.+|+|+.|..
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 458899999865 34455667779999999988655 4 667776776665321 3467889999999853
No 425
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.85 E-value=0.055 Score=44.07 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-++|.|++|+|||++++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 426
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.84 E-value=0.054 Score=45.79 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=20.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-.|+|+|.+|+||||+.+.+..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999998865
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.70 E-value=0.059 Score=43.31 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
+++.|++|+|||++++.+...
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988763
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.68 E-value=0.065 Score=50.53 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..=.++++|+.|+|||||++.+.+-
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3346899999999999999999874
No 429
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=92.68 E-value=0.056 Score=50.20 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.++|+|+.|+|||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 578999999999999999976
No 430
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.66 E-value=0.075 Score=45.66 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|++.|.+||||||+.++|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 431
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.58 E-value=0.058 Score=51.33 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 47899999999999999998774
No 432
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.53 E-value=0.076 Score=42.72 Aligned_cols=21 Identities=24% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.|+|.|.+|+||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999988865
No 433
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=92.51 E-value=0.066 Score=50.93 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++++|+.|+|||||++.+.+-
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347899999999999999999874
No 434
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.51 E-value=0.061 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.9
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999885
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.47 E-value=0.061 Score=49.37 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+.=+++|+|+.|+|||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3447999999999999999999875
No 436
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.41 E-value=0.064 Score=45.96 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..+++.|++|+|||++++.+...
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999999999763
No 437
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.40 E-value=0.065 Score=45.60 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+++.|++|+|||+|++++...
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 5999999999999999999763
No 438
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=92.37 E-value=0.069 Score=44.66 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..+++.|++|+|||++++.+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 439
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.23 E-value=0.059 Score=45.54 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.6
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+..-|+|.|.+|+||||+++.|...
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHh
Confidence 35578999999999999999888753
No 440
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=92.20 E-value=0.071 Score=50.26 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+.=-++++|+.|+|||||++.+.+-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4456899999999999999999874
No 441
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.13 E-value=0.06 Score=44.21 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+++.|+||+|||+++.++..
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999888865
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.078 Score=50.75 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.6
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..=.++++|+.|+|||||++.+.+-
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 3446899999999999999999873
No 443
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.04 E-value=0.1 Score=45.60 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.6
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..-|+|+|++|||||+|...+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 346889999999999999999763
No 444
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.99 E-value=0.076 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.+++.|++|+|||+|++.+...
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999998763
No 445
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=91.97 E-value=0.073 Score=45.94 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-+++.|+||+|||+|.+++...
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999998764
No 446
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.97 E-value=0.095 Score=43.71 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=20.1
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+.+++++|.+||||||+..+|..
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHH
Confidence 457899999999999999888865
No 447
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.96 E-value=0.1 Score=44.91 Aligned_cols=23 Identities=17% Similarity=0.495 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999987665
No 448
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.95 E-value=0.078 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
--++|+|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999998876
No 449
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.93 E-value=0.079 Score=45.83 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-|++.|++|+|||+|++.+...
T Consensus 51 ~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 51 GVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCcCHHHHHHHHHHH
Confidence 5899999999999999999863
No 450
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=91.91 E-value=0.073 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.0
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|++.|.+|+||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999888865
No 451
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.84 E-value=0.085 Score=43.58 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-+++.|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999877754
No 452
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.82 E-value=0.11 Score=42.72 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.3
Q ss_pred cceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 102 MREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 102 ~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
++..-|+|.|.+|+||||+++.+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~ 28 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAE 28 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4567799999999999999998865
No 453
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.81 E-value=0.086 Score=43.03 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=21.8
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
....|+|+|++|+|||+|...|...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999874
No 454
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.80 E-value=0.06 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 371 ~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSSSTHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 455
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.76 E-value=0.22 Score=43.40 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.|++.|++|+|||++++.+...
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHH
Confidence 4899999999999999999653
No 456
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.76 E-value=0.091 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.2
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++++|+.|+|||||++.+.+-
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 346899999999999999999874
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.73 E-value=0.099 Score=49.27 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++|+|+.|+|||||++.+.+-
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999884
No 458
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.71 E-value=0.087 Score=49.65 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|+.|+|||||++.+.+-
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
No 459
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.69 E-value=0.066 Score=51.11 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.1
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++++|+.|+|||||++.+.+-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 447899999999999999998763
No 460
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=91.68 E-value=0.1 Score=43.38 Aligned_cols=27 Identities=7% Similarity=-0.023 Sum_probs=21.7
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
|.+.+=|++-|.++.|||+|++++.+.
T Consensus 26 P~nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 26 PQNKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CCCEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CCCceEEEecCcccccHHHHHHHHhcc
Confidence 445555666699999999999999986
No 461
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=91.66 E-value=0.06 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.220 Sum_probs=20.5
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.=.++++|+.|+|||||++.+.+-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 347899999999999999887763
No 462
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.62 E-value=0.082 Score=46.64 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|.|++|+|||||++.+...
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998763
No 463
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=91.57 E-value=0.12 Score=43.64 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
....+++.|++|+|||++++++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3457999999999999999998763
No 464
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.52 E-value=1.2 Score=38.16 Aligned_cols=85 Identities=12% Similarity=0.095 Sum_probs=56.2
Q ss_pred EEEEEEeCCCcccchhhhhhcccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEE-EEEeCCCCCCCCCCCCH
Q psy10504 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQREVPT 230 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-vv~nK~Dl~~~~~~~~~ 230 (286)
+.+.++|||+...... ....+..+|.+++++..+ ..+...+..++..+.......+.+++ +|+|+.+..
T Consensus 157 yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------- 226 (307)
T 3end_A 157 TDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------- 226 (307)
T ss_dssp CSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC--------
T ss_pred CCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH--------
Confidence 5688999987543221 234567899999998764 45667777777777654444567765 899999842
Q ss_pred HHHHHHHHhcCCCEEE
Q psy10504 231 LDGQALAQSWGCPFIE 246 (286)
Q Consensus 231 ~~~~~~~~~~~~~~~~ 246 (286)
...+.+.+.++.+++.
T Consensus 227 ~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 227 DEVDRFCKETNFRRLA 242 (307)
T ss_dssp HHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHcCCCcee
Confidence 2355566666766543
No 465
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.49 E-value=0.074 Score=50.66 Aligned_cols=23 Identities=39% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
=.++++|+.|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999988763
No 466
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=91.47 E-value=0.11 Score=42.19 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
-.+|+|+.|+||||+++++.-
T Consensus 25 ~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999998853
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.44 E-value=0.096 Score=45.38 Aligned_cols=85 Identities=15% Similarity=0.070 Sum_probs=47.4
Q ss_pred EEEEEEeCCCcccchh--hh--hhccc--CccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCCCCCCC
Q psy10504 152 CVLEILDTAGTEQFAS--MR--DLYIK--NGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQ 225 (286)
Q Consensus 152 ~~l~l~DtpG~~~~~~--~~--~~~~~--~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~ 225 (286)
+.+.++||+|...... +. ...+. ..+.+++|+|++.. .+.+.++...+. . -+. .-+|.||.|... .
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~---~-l~~-~giVltk~D~~~-~ 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFS---S-VPV-NQYIFTKIDETT-S 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTS---S-SCC-CEEEEECTTTCS-C
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHh---c-CCC-CEEEEeCCCccc-c
Confidence 3488999999664332 11 12222 36788999988753 233433322221 1 122 346679999751 1
Q ss_pred CCCCHHHHHHHHHhcCCCEEEEe
Q psy10504 226 REVPTLDGQALAQSWGCPFIEAS 248 (286)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~vS 248 (286)
...........+.|+..++
T Consensus 255 ----~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 ----LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp ----CHHHHHHHHTCSCCCSEEC
T ss_pred ----hhHHHHHHHHHCcCEEEEE
Confidence 1245566667888876665
No 468
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.43 E-value=0.099 Score=44.76 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..+++.|++|+|||++++.+...
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998763
No 469
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.37 E-value=0.13 Score=42.83 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-|++.|..|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999998763
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.34 E-value=0.11 Score=49.60 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|+.|+|||||++.+.+-
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999884
No 471
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.34 E-value=0.34 Score=41.77 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy10504 106 KVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.+++.|++|+|||++++.+..
T Consensus 40 ~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999876
No 472
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.34 E-value=0.1 Score=46.27 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 473
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=91.14 E-value=0.023 Score=47.46 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
++|+|+.|+|||||++.+.+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 479999999999999999873
No 474
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=91.12 E-value=0.16 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999988763
No 475
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.07 E-value=0.11 Score=45.67 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998874
No 476
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.05 E-value=0.15 Score=44.82 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
..|+|+|++|+|||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998875
No 477
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.02 E-value=0.12 Score=45.12 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=51.1
Q ss_pred EEEEEeCCCcccchh-h-------hhh----cccCccEEEEEEECCCcccHHHHHHHHHHHHHHhCCCCCcEEEEEeCCC
Q psy10504 153 VLEILDTAGTEQFAS-M-------RDL----YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220 (286)
Q Consensus 153 ~l~l~DtpG~~~~~~-~-------~~~----~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~D 220 (286)
.+.++||||...... + ... .-...+.+++|+|+..+ .+.+.+. ..+... .++ .-+|+||.|
T Consensus 188 dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~---~~i-~gvVlTk~D 260 (306)
T 1vma_A 188 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEA---VNV-TGIILTKLD 260 (306)
T ss_dssp SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHH---SCC-CEEEEECGG
T ss_pred CEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhc---CCC-CEEEEeCCC
Confidence 478999999532221 1 111 11347889999998733 2223322 223321 122 346679999
Q ss_pred CCCCCCCCCHHHHHHHHHhcCCCEEEEeCCCCCcHHH
Q psy10504 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257 (286)
Q Consensus 221 l~~~~~~~~~~~~~~~~~~~~~~~~~vSa~~~~gv~~ 257 (286)
.. . + .-....+....+.|+.+++ .|+.+++
T Consensus 261 ~~-~-~---gG~~l~~~~~~~~Pi~~i~--~Ge~~~d 290 (306)
T 1vma_A 261 GT-A-K---GGITLAIARELGIPIKFIG--VGEKAED 290 (306)
T ss_dssp GC-S-C---TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred Cc-c-c---hHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence 64 1 1 1235677778899988886 4554544
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.00 E-value=0.12 Score=49.45 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.++|+|+.|+|||||++.+.+-
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 3799999999999999999884
No 479
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.90 E-value=0.13 Score=45.55 Aligned_cols=22 Identities=27% Similarity=0.661 Sum_probs=19.7
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988875
No 480
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.75 E-value=0.065 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=17.5
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999888765
No 481
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.70 E-value=0.18 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
.-|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999863
No 482
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=90.64 E-value=0.13 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--|++.|++|+|||+|++++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46899999999999999999864
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.60 E-value=0.12 Score=45.74 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+.--+.|+|++|+|||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999874
No 484
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.56 E-value=0.13 Score=44.95 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q psy10504 107 VVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~~ 127 (286)
+++.|++|+|||++++.+...
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999988764
No 485
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.53 E-value=0.13 Score=46.92 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-|++.|+||+|||+|++++.+.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999863
No 486
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=90.47 E-value=0.11 Score=49.01 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=21.7
Q ss_pred ceEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 103 REFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 103 ~~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
+...|+|+|.+|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4567999999999999999998764
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.46 E-value=0.14 Score=44.53 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++|.|++|+|||||++.+...
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHHHH
Confidence 5889999999999999999764
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.44 E-value=0.13 Score=44.76 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.4
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..|++.|++|+|||+|++++...
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999763
No 489
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.40 E-value=0.14 Score=42.80 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=21.3
Q ss_pred CcceEEEEEECCCCCcHHHHHHHHhc
Q psy10504 101 TMREFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 101 ~~~~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.++..-|+|.|.+|+||||+++.+..
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999998865
No 490
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.36 E-value=0.12 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
..++|.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.34 E-value=0.21 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhc
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
.-|+|+|++|||||+|...+..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 4588999999999999999976
No 492
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.14 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 46999999999999999999873
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.30 E-value=0.17 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=19.8
Q ss_pred eEEEEEECCCCCcHHHHHHHHhc
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~ 126 (286)
...|+++|.+|+||||+.+.+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999887765
No 494
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=90.27 E-value=0.07 Score=45.00 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhc
Q psy10504 107 VVVLGSGGVGKSALTVQFVS 126 (286)
Q Consensus 107 V~ivG~~~~GKTSLi~~l~~ 126 (286)
+++.|++|+|||+|++.+..
T Consensus 47 vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999876
No 495
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.10 E-value=0.17 Score=50.98 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSGCF 129 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~~~ 129 (286)
.++++|+.|+|||||++.+.++.+
T Consensus 463 ~v~LiGpNGsGKSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCGKSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999997644
No 496
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=90.08 E-value=0.21 Score=45.21 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.7
Q ss_pred CCcceEEEEEECCCCCcHHHHHHHHh
Q psy10504 100 FTMREFKVVVLGSGGVGKSALTVQFV 125 (286)
Q Consensus 100 ~~~~~~kV~ivG~~~~GKTSLi~~l~ 125 (286)
...+.+|++++|...|||||++.++.
T Consensus 36 ~~~~~~klLLLG~geSGKSTi~KQmk 61 (402)
T 1azs_C 36 VYRATHRLLLLGAGESGKSTIVKQMR 61 (402)
T ss_dssp CCTTEEEEEEEESTTSSHHHHHHHHH
T ss_pred HhhccceEEEecCCCCchhhHHHHHH
Confidence 34578999999999999999988875
No 497
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.06 E-value=0.17 Score=44.02 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.9
Q ss_pred eEEEEEECCCCCcHHHHHHHHhcC
Q psy10504 104 EFKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 104 ~~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
...+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999888764
No 498
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.02 E-value=0.14 Score=44.57 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q psy10504 106 KVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 106 kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-++|.|++|+|||+|++.+...
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINE 53 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 6889999999999999998763
No 499
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.95 E-value=0.14 Score=45.15 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.3
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
-.++|.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 500
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.91 E-value=0.16 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.5
Q ss_pred EEEEEECCCCCcHHHHHHHHhcC
Q psy10504 105 FKVVVLGSGGVGKSALTVQFVSG 127 (286)
Q Consensus 105 ~kV~ivG~~~~GKTSLi~~l~~~ 127 (286)
--|++.|+||+|||+|++++.+.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999863
Done!