RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10504
(286 letters)
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 289 bits (742), Expect = e-100
Identities = 123/166 (74%), Positives = 146/166 (87%), Gaps = 1/166 (0%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+KVVVLGSGGVGKSALTVQFV+G F+EKYDPTIEDFYRKEIEVD +P VLEILDTAG
Sbjct: 1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQFASMRDLYIKNGQGF++VYSL N +FQDIK M++ I RVK E+VP++LV NK+DL
Sbjct: 61 TEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
+REV + +G+ALA+ WGCPF+E SAK+KT V+E+FAEIVR+MN
Sbjct: 121 -ESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 287 bits (738), Expect = 4e-99
Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 5/195 (2%)
Query: 92 PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
+R KVV+LG VGK++L QFV G F E YDPT+E+ Y K + + K
Sbjct: 12 ENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDE 71
Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP 211
L ++DTAG ++++ + +I G+V+VYS+T+ H+FQ I+ + + + G RVP
Sbjct: 72 FHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP 131
Query: 212 ILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPE 271
++LV NK DL S +REV ++G+ LA+SWG F+E+SA+ +F ++++E+
Sbjct: 132 VVLVGNKADL-SPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVEN 190
Query: 272 KDNASFCWCSSCSIL 286
C ++
Sbjct: 191 SYGQE----RRCHLM 201
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 284 bits (730), Expect = 5e-98
Identities = 72/173 (41%), Positives = 113/173 (65%), Gaps = 1/173 (0%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+ KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG
Sbjct: 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 75
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E +A++RD Y ++G+GF+ V+S+T +F +E I RVK E VP LLV NK DL
Sbjct: 76 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 135
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
+R+V + + A+ W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 136 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 284 bits (729), Expect = 7e-98
Identities = 84/174 (48%), Positives = 122/174 (70%), Gaps = 3/174 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
M E+K+VV+G+GGVGKSALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG
Sbjct: 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 78
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E++++MRD Y++ G+GF+ V+++ N +F DI +E I RVK S+ VP++LV NK DL
Sbjct: 79 QEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDL 138
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN-FNPEKDN 274
R V T LA+S+G PFIE SAK + V + F +VRE+ + +K N
Sbjct: 139 --PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLN 190
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 283 bits (726), Expect = 1e-97
Identities = 71/167 (42%), Positives = 110/167 (65%), Gaps = 1/167 (0%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
++ KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTA
Sbjct: 1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLD 220
G E +A++RD Y ++G+GF+ V+S+T +F +E I RVK E VP LLV NK D
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
L +R+V + + A W ++E SAK + NV+++F +++RE+
Sbjct: 121 L-EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR 166
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 282 bits (725), Expect = 3e-97
Identities = 84/190 (44%), Positives = 125/190 (65%), Gaps = 7/190 (3%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
E+K+VV+G+ GVGKSALT+Q + F+++YDPTIED YRK++ +D C+L+ILDTAG
Sbjct: 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAG 61
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E++++MRD Y++ G+GF+ V+++ N +F+DI +E I RVK SE VP++LV NK DL
Sbjct: 62 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL 121
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM-----NFNPEKDNAS 276
R V T Q LA+S+G PFIE SAK + V++ F +VRE+ + +
Sbjct: 122 --PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKDGKKKK 179
Query: 277 FCWCSSCSIL 286
+ C I+
Sbjct: 180 KKSKTKCVIM 189
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 282 bits (723), Expect = 3e-97
Identities = 106/167 (63%), Positives = 133/167 (79%), Gaps = 2/167 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
MRE+K+VVLGSGGVGKSALTVQFV G F+EKYDPTIED YRK++EVD C+LEILDTAG
Sbjct: 1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
TEQF +MRDLY+KNGQGF +VYS+T TF D++ ++E I RVK +E VP++LV NK DL
Sbjct: 61 TEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDL 120
Query: 222 ASHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREMN 267
+R V GQ LA+ W C F+E+SAK+K NVNE+F ++VR++N
Sbjct: 121 -EDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 282 bits (723), Expect = 5e-97
Identities = 61/165 (36%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+ K+ +LG VGKS+LT+QFV G F++ YDPTIE+ + K I V+ L+++DTAG
Sbjct: 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQ 64
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
++++ Y + G+++VYS+T+ +F+ IK + + + G ++PI+LV NK DL
Sbjct: 65 DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDL- 123
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
+R + +G+ALA+SW F+E+SAK ++F I+ E
Sbjct: 124 HMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE 168
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 280 bits (719), Expect = 1e-96
Identities = 82/166 (49%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
M E+K+VV+G+GGVGKSALT+Q + F+++ DPTIED YRK++ +D C+L+ILDTAG
Sbjct: 1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E++++MRD Y++ G+GF+ V+++ N +F+DI Q +E I RVK S+ VP++LV NK DL
Sbjct: 61 QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL 120
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
A R V + Q LA+S+G P+IE SAK + V + F +VRE+
Sbjct: 121 A--ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 280 bits (720), Expect = 1e-96
Identities = 74/171 (43%), Positives = 109/171 (63%), Gaps = 1/171 (0%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
K+VV+G GGVGKSALT+QF+ F+ YDPTIED Y K VD P L+ILDTAG
Sbjct: 8 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQ 67
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
E+F +MR+ Y++ G GF++V+++ + +F ++ ++ I RVK + P++LV NK DL
Sbjct: 68 EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADL- 126
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
QR+VP + A S + EASAK + NV+E F ++VR + E++
Sbjct: 127 ESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 279 bits (717), Expect = 4e-96
Identities = 76/167 (45%), Positives = 115/167 (68%), Gaps = 2/167 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+ +K+VV+G GGVGKSALT+QF F++ YDPTIED Y K E+D +L++LDTAG
Sbjct: 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAG 75
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E+F++MR+ Y++ G GF++VYS+T+ +F+ + + +LI RVK E P++LVANK+DL
Sbjct: 76 QEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 135
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
H R+V G+ +A + P+IE SAK NV++ F ++VR +
Sbjct: 136 -MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 280 bits (719), Expect = 4e-96
Identities = 72/175 (41%), Positives = 113/175 (64%), Gaps = 1/175 (0%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+ KV+++GSGGVGKSALT+QF+ F+E Y+PT D YRK++ +D ++ILDTAG
Sbjct: 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAG 71
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E +A++RD Y ++G+GF+ V+S+T +F +E I RVK E VP LLV NK DL
Sbjct: 72 QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 131
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
+R+V + + A+ W ++E SAK + NV+++F +++RE+ +D+
Sbjct: 132 -EDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKMEDSKE 185
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 275 bits (706), Expect = 2e-94
Identities = 55/169 (32%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M ++VV+LG GVGK++L F + ++ ED Y + + VD L ++DT
Sbjct: 1 SMALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 161 GTEQF--ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
E+ + ++ ++ G +V+VYS+ + +F+ +++ + R ++ VPI+LV NK
Sbjct: 61 EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120
Query: 219 LDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
DLA REV +G+A A + C FIE SA + NV E+F +VR++
Sbjct: 121 ADLA-RCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR 168
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 275 bits (705), Expect = 2e-94
Identities = 74/166 (44%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+++V V G+GGVGKS+L ++FV G F E Y PT+ED YR+ I DK+ C L+I DT G+
Sbjct: 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGS 61
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKG-SERVPILLVANKLDL 221
QF +M+ L I G F++VYS+T+ + +++K + E I +KG E +PI+LV NK D
Sbjct: 62 HQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 121
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
S REV + + +ALA++W C F+E SAK NV E+F E++
Sbjct: 122 -SPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 275 bits (706), Expect = 3e-94
Identities = 65/167 (38%), Positives = 103/167 (61%), Gaps = 3/167 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
E K+ + G GVGKSAL V+F++ F+ +YDPT+E YR + +D +EILDTAG
Sbjct: 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAG 85
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E R+ +++ G+GFV+VY +T+ +F+++ +K ++ +K + V ++LV NK DL
Sbjct: 86 QEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
H R+V T +G+ LA C F E SA + N+ E+F E+ RE+
Sbjct: 145 D-HSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 190
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 271 bits (694), Expect = 2e-92
Identities = 77/196 (39%), Positives = 117/196 (59%), Gaps = 13/196 (6%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+++VVV G+GGVGKS+L ++FV G F + Y PTIED YR+ I DK+ C L+I DT G
Sbjct: 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTG 65
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLD 220
+ QF +M+ L I G F++V+S+T+ + +++ + +LI ++KGS E +P++LV NK D
Sbjct: 66 SHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD 125
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN----------FNP 270
QREV T + QA+AQ W C F+E SAK NV E+F E++
Sbjct: 126 E--TQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMSLNIDGKRS 183
Query: 271 EKDNASFCWCSSCSIL 286
K + C+++
Sbjct: 184 GKQKRTDRVKGKCTLM 199
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 268 bits (689), Expect = 5e-92
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 2/163 (1%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQ 164
+KV++LG+ GVGKSAL F G Y + I VD L + D +
Sbjct: 3 YKVLLLGAPGVGKSALARIFG-GVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 61
Query: 165 FASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASH 224
+ + G +V+VYS+T+ +F+ +++ + R + ++ VPI+LV NK DL
Sbjct: 62 GRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV-R 120
Query: 225 QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
REV +G+A A + C FIE SA NV +F +VR++
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIR 163
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 268 bits (688), Expect = 1e-91
Identities = 54/176 (30%), Positives = 86/176 (48%), Gaps = 3/176 (1%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
FKV+++G GVGKS L F ++P ED Y + I VDK L + D
Sbjct: 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIW 80
Query: 161 GTEQF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
+RD ++ G F++V+S+T+ +F + + + + +P++LV NK
Sbjct: 81 EQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKS 140
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNA 275
DLA REV +G+ LA + C IE SA N E+F VR++ +++A
Sbjct: 141 DLA-RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRRGRNHA 195
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 262 bits (671), Expect = 3e-89
Identities = 51/165 (30%), Positives = 81/165 (49%), Gaps = 3/165 (1%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPT-IEDFYRKEIEVDKAPCVLEILDTAGTE 163
FKV+++G GVGKS L F ++ ED Y + I VDK L + D
Sbjct: 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 164 QF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLA 222
++D ++ G F++V+S+T+ +F + + + + +P++LV NK DLA
Sbjct: 63 DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
REV +G+ LA + C IE SA N E+F VR++
Sbjct: 123 -RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 261 bits (669), Expect = 2e-88
Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 8/195 (4%)
Query: 85 LVPTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQF--VSGCFMEKYDPTIEDFYR 142
L + I + ++VV++G GVGKS L F V + ED Y
Sbjct: 18 LYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYE 77
Query: 143 KEIEVDKAPCVLEILD---TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKE 199
+ + VD + +LD G ++ + D ++ G +++VYS+T+ +F+ +++
Sbjct: 78 RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 200 LITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
+ R + +E +PI+LV NK DL REV +G+A A + C FIE SA + NV E+F
Sbjct: 136 QLRRARQTEDIPIILVGNKSDLV-RCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF 194
Query: 260 AEIVREMNFNPEKDN 274
IVR++ +
Sbjct: 195 EGIVRQVRLRRDSKE 209
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 258 bits (662), Expect = 8e-88
Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 5/168 (2%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
E + +LG G GKSALTV+F++ F+ +YDP +ED Y E VD P L ++DTA
Sbjct: 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADL 79
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT-RVK-GSERVPILLVANKLD 220
+ + + Y+ F+VVYS+ + +F EL+ K +P LL+ NKLD
Sbjct: 80 DTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLD 138
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVREMN 267
+ + R+V +G ALA +GC F E SA + +V +F E VRE
Sbjct: 139 M-AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 247 bits (632), Expect = 4e-83
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 8/182 (4%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQF--VSGCFMEKYDPTIEDFYRKEIEVDKAPC---VL 154
F M ++VV++G GVGKS L F V + ED Y + + VD +L
Sbjct: 2 FGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILL 61
Query: 155 EILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILL 214
++ + G ++ + D ++ G +++VYS+T+ +F+ +++ + R + +E +PI+L
Sbjct: 62 DMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIIL 119
Query: 215 VANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
V NK DL REV +G+A A + FIE SA + NV E+F IVR++ +
Sbjct: 120 VGNKSDLV-RXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
Query: 275 AS 276
+
Sbjct: 179 KN 180
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 243 bits (623), Expect = 8e-82
Identities = 40/170 (23%), Positives = 79/170 (46%), Gaps = 8/170 (4%)
Query: 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
F E KV ++G+ GKSAL ++++G ++++ P ++KEI VD +L I D
Sbjct: 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRD 73
Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
G + + V V+SL + +FQ + + + + VP++LV +
Sbjct: 74 EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQ 128
Query: 219 LDL-ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVREM 266
+ A++ R + + L+ C + E A NV +F ++ +++
Sbjct: 129 DAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 225 bits (575), Expect = 1e-74
Identities = 41/173 (23%), Positives = 83/173 (47%), Gaps = 12/173 (6%)
Query: 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
++ E ++ VLG GKS+L +F++G + + + T + Y+KE+ VD ++ I +
Sbjct: 2 MRSIPELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYKKEMLVDGQTHLVLIRE 60
Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELIT--RVKGSERVPILLV- 215
AG + + V+SL + ++FQ + ++ ++ R +G + + LV
Sbjct: 61 EAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 216 -ANKLDLASHQREVPTLDGQAL-AQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+++ S R V +AL A C + E A NV+ +F E+ +++
Sbjct: 116 TQDRISA-SSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 163 bits (414), Expect = 2e-50
Identities = 60/167 (35%), Positives = 87/167 (52%), Gaps = 5/167 (2%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+RE KV +LG GVGKS++ +FV F +PTI F K ++ I DTA
Sbjct: 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E+F ++ +Y + ++VY +T TF +K ++EL R G + + + NK
Sbjct: 64 GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKC 121
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
DL REV D + A S F+E SAKN N+NE+F EI R +
Sbjct: 122 DLT-DVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 164 bits (417), Expect = 2e-50
Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+ K V +G G VGK+ + + + S F Y PT+ D + + VD L + DTA
Sbjct: 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTA 65
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANK 218
G E ++ +R L + FV+ +SL + +++++ K M EL + + VPI+LV K
Sbjct: 66 GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELR---RFAPNVPIVLVGTK 122
Query: 219 LDL-------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNP 270
LDL A H + + G+ L + G +IE S+K + NV +F ++ + P
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPP 182
Query: 271 EKDNAS 276
+
Sbjct: 183 RRKEVP 188
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 162 bits (413), Expect = 2e-50
Identities = 62/167 (37%), Positives = 94/167 (56%), Gaps = 5/167 (2%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+ +FK+V+LG VGKS+L ++FV G F E + TI F + + +D EI DTA
Sbjct: 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E++ S+ +Y + Q +VVY +TN +F K +KEL + + S + I L NK
Sbjct: 64 GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKA 121
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
DLA ++R V + Q+ A F+E SAK NVNE+F I +++
Sbjct: 122 DLA-NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 163 bits (414), Expect = 3e-50
Identities = 62/175 (35%), Positives = 91/175 (52%), Gaps = 5/175 (2%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+RE KV +LG GVGKS++ +FV F PTI F K + I DTA
Sbjct: 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 80
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E+F S+ +Y + V+VY +T +F +K+ +KEL + G E + + + NK
Sbjct: 81 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKC 138
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
DL+ REVP D + A+S G +E SAKN N+ E+F I R++ +N
Sbjct: 139 DLS-DIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 163 bits (415), Expect = 5e-50
Identities = 38/165 (23%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI--EDFYRKEIEVDKAPCVLEILDTAGT 162
+K+ ++G GGVGK+ + + G F + Y+ T+ + ++ + DTAG
Sbjct: 12 YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
E+ A ++D+Y G ++ + +T+ T Q++ + +KE + PI++ ANK+D+
Sbjct: 72 EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEAPIVVCANKIDI 129
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+++++ + + + E SAK N F + R
Sbjct: 130 K-NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIF 173
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 161 bits (409), Expect = 2e-49
Identities = 61/172 (35%), Positives = 96/172 (55%), Gaps = 5/172 (2%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
K+V+LG G GKS+L ++FV F+E + TI F+ + + V+ A EI DTAG E
Sbjct: 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE 72
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ S+ +Y + ++V+ +TN +F+ K+ ++EL + +G+ + + L NK DL
Sbjct: 73 RYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLL 130
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDN 274
R+V D Q AQ G F+E SAK TNV E+F EI R + +N
Sbjct: 131 -DARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPTEN 181
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 159 bits (406), Expect = 3e-49
Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FKVV+LG G VGK++L +++ F +K+ T+ F K++ + L I DTAG E
Sbjct: 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ +Y ++ G ++VY +T+ +FQ +K +KEL R + + +V NK+DL
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLE 124
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R V + ++ A+S G SAK + E+F ++ + M
Sbjct: 125 -KERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 159 bits (405), Expect = 6e-49
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 5/166 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCV-LEILDTAGT 162
K+VVLG G GK++LT F F ++Y TI DF+ + I + V L+I D G
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT-RVKGSERVPILLVANKLD 220
M D YI QG ++VY +TN+ +F++++ + + + + LV NK+D
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKID 126
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
L H R + Q G SAK +V F ++ E+
Sbjct: 127 LE-HMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 159 bits (405), Expect = 1e-48
Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 5/177 (2%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+R+FK+V LG VGK++L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 14 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E+F S+ YI++ VVVY +TN ++FQ + + ++ R + V I+LV NK
Sbjct: 74 GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVGNKT 131
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
DLA +R+V +G+ A+ FIE SAK NV ++F + + + S
Sbjct: 132 DLA-DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMESTQDRS 187
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 158 bits (403), Expect = 1e-48
Identities = 61/163 (37%), Positives = 91/163 (55%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FKVV++G GVGKS L +F F + TI +F + I+VD +I DTAG E
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + G ++VY + H T++++++ +KEL R + I+LV NK DL
Sbjct: 90 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLR 147
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
H R VPT + +A A+ G FIE SA + TNV F I+ E
Sbjct: 148 -HLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTE 189
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 158 bits (402), Expect = 2e-48
Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 5/167 (2%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+R+FK+V LG VGK++L +F+ F Y TI DF K + ++ L++ DTA
Sbjct: 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E+F S+ YI++ VVVY +TN ++F + + ++ R + V I+LV NK
Sbjct: 72 GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDV--RTERGSDVIIMLVGNKT 129
Query: 220 DLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
DL+ +R+V T +G+ A+ FIE SAK NV ++F + +
Sbjct: 130 DLS-DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 175
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 158 bits (402), Expect = 2e-48
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 6/168 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCV-LEILDTAGT 162
KV++LG GVGK++L ++V+ + ++Y TI DF KE+ VD +++ DTAG
Sbjct: 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKL 219
E+F S+ + + V+VY +TN +F++IK E + V E P +++ NK+
Sbjct: 69 ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 128
Query: 220 DLASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
D ++ V Q LA+S G P SAKN NV+ F EI R
Sbjct: 129 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 158 bits (402), Expect = 2e-48
Identities = 54/163 (33%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FKVV++G GVGK+ L +F F TI +F + + + A +I DTAG E
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + G ++V+ LT H T+ +++ +KEL + ++LV NK DL+
Sbjct: 86 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKEL--YDHAEATIVVMLVGNKSDLS 143
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
REVPT + + A++ G F+E SA + TNV F +++E
Sbjct: 144 -QAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKE 185
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 157 bits (399), Expect = 7e-48
Identities = 60/180 (33%), Positives = 90/180 (50%), Gaps = 8/180 (4%)
Query: 88 TDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIE 146
+ L+PR SI + F FK +V+GS G GKS L QF+ F + + TI +F + +
Sbjct: 12 SGLVPRGSIWSDFL---FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVN 68
Query: 147 VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVK 205
V L+I DTAG E+F S+ Y + G ++VY +T+ T+ + + + R
Sbjct: 69 VGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDA--RTL 126
Query: 206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
S + ++L NK DL +REV L+ AQ F+E SA NV E F + R
Sbjct: 127 ASPNIVVILCGNKKDLD-PEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCART 185
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 157 bits (399), Expect = 8e-48
Identities = 61/163 (37%), Positives = 90/163 (55%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FKVV++G GVGKS L +F F + TI +F + I+VD +I DTAG E
Sbjct: 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ + Y + G ++VY + H T++++++ +KEL R + I+LV NK DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLR 123
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
H R VPT + +A A+ FIE SA + TNV E F I+ E
Sbjct: 124 -HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTE 165
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 157 bits (399), Expect = 8e-48
Identities = 54/178 (30%), Positives = 93/178 (52%), Gaps = 9/178 (5%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK+V++G+ GVGK+ L +F G F TI DF K +E++ L+I DTAG E
Sbjct: 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F S+ Y ++ ++ Y +T +F+ + + ++E+ S +V +LV NK+DLA
Sbjct: 87 RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLA 144
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE----MNFNPEKDNAS 276
+REV + +++ ++E SAK NV ++F ++ N +N S
Sbjct: 145 -ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVS 201
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 156 bits (397), Expect = 9e-48
Identities = 55/163 (33%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
FK +++G GVGKS L QF FM TI +F + IEV L+I DTAG E
Sbjct: 16 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G ++VY +T T+ + + + R + I+L+ NK DL
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIILIGNKADLE 133
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
QR+V + + A+ G F+EASAK NV + F E ++
Sbjct: 134 -AQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKK 175
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 156 bits (396), Expect = 2e-47
Identities = 57/163 (34%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
FK +++G GVGKS L +QF F +D TI +F + + +D L+I DTAG E
Sbjct: 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
F S+ Y + G ++VY +T TF + +++ R S + I+L+ NK DL
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDA--RQHSSSNMVIMLIGNKSDLE 139
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
+R+V +G+A A+ G F+E SAK NV E F +E
Sbjct: 140 -SRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 181
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 156 bits (396), Expect = 2e-47
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G GVGKS L ++F + E Y TI DF + IE+D L+I DTAG E
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G +VVY +T+ +F ++KQ ++E+ SE V LLV NK DL
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL- 133
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ ++ V + A S G PF+E SAKN TNV + F + E+
Sbjct: 134 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 155 bits (394), Expect = 3e-47
Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
FK +V+G+ G GKS L QF+ F + + TI +F K I V L+I DTAG E
Sbjct: 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F S+ Y + G ++VY +T+ T+ + + + R+ S+ + I+L NK DL
Sbjct: 71 RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDA--RMLASQNIVIILCGNKKDLD 128
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
REV L+ AQ F+E SA NV E F + R+
Sbjct: 129 -ADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARK 170
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 155 bits (394), Expect = 4e-47
Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 87 PTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEI 145
+ L+PR S + + + +K+V+ G VGKS+ ++ F E T+ DF K +
Sbjct: 11 SSGLVPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTL 70
Query: 146 EVDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRV 204
VD VL++ DTAG E+F S+ Y + G +++Y +T +F +I++ + +
Sbjct: 71 IVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI--ED 128
Query: 205 KGSERVPILLVANKLDLA-----SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMF 259
E VPI+LV NK D+ Q+ VP G+ LA ++G F E SAK+ +N+ E
Sbjct: 129 AAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAV 188
Query: 260 AEIVREM 266
+ RE+
Sbjct: 189 LHLAREV 195
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 155 bits (394), Expect = 4e-47
Identities = 63/164 (38%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G GVGKS L ++F + E Y TI DF + IE+D L+I DTAG E
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G +VVY +T+ +F ++KQ ++E+ SE V LLV NK DL
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDL- 150
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ ++ V + A S G PF+E SAKN TNV + F + E+
Sbjct: 151 TTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 154 bits (391), Expect = 4e-47
Identities = 49/164 (29%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
K+VV+G+G VGKS++ ++ G F + Y TI DF ++I+V+ L + DTAG E
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + Q V+V+S T+ +F+ I ++++ +P LV NK+DL
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAE---VGDIPTALVQNKIDL- 121
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+ + + LA+ F S K NV+E+F + +
Sbjct: 122 LDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 154 bits (392), Expect = 7e-47
Identities = 48/164 (29%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G+ VGK++ ++ F + T+ DF K + L+I DTAG E
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + GF+++Y + N +F ++ ++ + + ++LV NK DL
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI--KTYSWDNAQVILVGNKCDL- 139
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R VP DG+ LA G F EASAK NV ++F +V +
Sbjct: 140 EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 153 bits (390), Expect = 8e-47
Identities = 61/172 (35%), Positives = 99/172 (57%), Gaps = 7/172 (4%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FKV++LG GGVGKS+L ++V+ F + TI +F K++EVD ++I DTAG E
Sbjct: 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKLD 220
+F S+R + + ++ +S+ + +FQ++ KE I VK E P +++ NK+D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 221 LASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREMNFNPE 271
++ +R+V T + QA + G P+ E SAK+ TNV F E VR + +
Sbjct: 128 IS--ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 153 bits (390), Expect = 1e-46
Identities = 48/164 (29%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G+ VGK++ ++ F + T+ DF K + + L+I DTAG E
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + GF+++Y +TN +F ++ ++ + + ++LV NK D+
Sbjct: 84 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVGNKCDME 141
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R VPT GQ LA+ G F EASAK +V + F +V +
Sbjct: 142 -EERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 154 bits (391), Expect = 1e-46
Identities = 56/163 (34%), Positives = 81/163 (49%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
K++++G GVGKS+L ++F F + TI DF K I VD L I DTAG E
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + QG ++VY +T TF + + E + + +LV NK+D
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNE-LETYCTRNDIVNMLVGNKIDK- 133
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
REV +G A+ FIEASAK V F E+V +
Sbjct: 134 -ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEK 175
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 154 bits (392), Expect = 1e-46
Identities = 42/174 (24%), Positives = 88/174 (50%), Gaps = 8/174 (4%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
FK+V++G GG GK+ + ++G F +KY T+ + + ++ P + DTAG E
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F +RD Y Q ++++ +T+ T++++ ++L V+ E +PI+L NK+D+
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL---VRVCENIPIVLCGNKVDI- 131
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
++ + + + SAK+ N + F + R++ +P + +
Sbjct: 132 KDRKVKA--KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 154 bits (391), Expect = 1e-46
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G+ VGK++ ++ F + T+ DF K I + L+I DTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + GF+++Y +TN +F ++ ++ + + +LLV NK D+
Sbjct: 69 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVLLVGNKCDM- 125
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R V + G+ LA G F EASAK+ NV + F +V +
Sbjct: 126 EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 153 bits (389), Expect = 2e-46
Identities = 52/164 (31%), Positives = 88/164 (53%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G GVGK+ + +F F + TI DF + IE+D L+I DTAG E
Sbjct: 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G ++VY +TN +F +I+ ++ + S V +++ NK D+
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNI--EEHASADVEKMILGNKCDVN 126
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R+V G+ LA +G F+E SAK NV F + R++
Sbjct: 127 -DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 152 bits (387), Expect = 2e-46
Identities = 62/164 (37%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
K++++G GVGKS L V+FV F + TI DF K ++++ L+I DTAG E
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G ++VY +T+ TF +IKQ K + ++ +LLV NK D+
Sbjct: 64 RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDM- 120
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
R V G+ALA+ G PFIE+SAKN NVNE+F + + +
Sbjct: 121 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 153 bits (388), Expect = 4e-46
Identities = 61/164 (37%), Positives = 94/164 (57%), Gaps = 6/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
K++++G GVGKS L V+FV F + TI DF K ++++ L++ DTAG E
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G ++VY +T+ TF +IKQ K + ++ +LLV NK D+
Sbjct: 81 RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDM- 137
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
R V G+ALA+ G PFIE+SAKN NVNE+F + + +
Sbjct: 138 -ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 152 bits (386), Expect = 7e-46
Identities = 55/164 (33%), Positives = 89/164 (54%), Gaps = 5/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G+ GVGKS L ++F + Y TI DF K +E+D L+I DTAG E
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G ++VY +T+ +F +K ++E+ + V LLV NK DL
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDL- 125
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+R V + A + PF+E SA + TNV + F + R++
Sbjct: 126 KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 152 bits (386), Expect = 1e-45
Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK+V++G GVGKS L +F F TI +F + +E++ +I DTAG E
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
++ ++ Y + G ++VY ++ ++++ + EL R + V + L+ NK DLA
Sbjct: 74 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSEL--RENADDNVAVGLIGNKSDLA 131
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
H R VPT + + AQ F E SA N NV++ F E++
Sbjct: 132 -HLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINT 173
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 151 bits (384), Expect = 1e-45
Identities = 53/165 (32%), Positives = 89/165 (53%), Gaps = 6/165 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK+V++G VGK+ + +F +G F E+ TI DF K +E+ L+I DTAG E
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y ++ G ++ Y +T +F + ++++ R + LL+ NK DL+
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLS 147
Query: 223 SHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVREM 266
REV + Q+LA+ + IE SAK+ +NV E F + E+
Sbjct: 148 -ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 152 bits (385), Expect = 1e-45
Identities = 41/169 (24%), Positives = 70/169 (41%), Gaps = 8/169 (4%)
Query: 105 FKVVVLGSGGVGKSALTVQFV--SGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEI--LDT 159
KV V+G VGKSAL F F++ Y T + + + +E+ LDT
Sbjct: 21 CKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDT 80
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT-RVKGSERVPILLVAN 217
AG++ + Y ++V+ +++ +F+ K + L + R + +LVAN
Sbjct: 81 AGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVAN 140
Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAK-NKTNVNEMFAEIVRE 265
K DL + +V Q A + F + SA + + F I
Sbjct: 141 KTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 151 bits (383), Expect = 2e-45
Identities = 54/168 (32%), Positives = 88/168 (52%), Gaps = 8/168 (4%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCVLEILDTAGTE 163
FK++V+G VGK+ LT +F +G F ++ + TI DF + +++D +++ DTAG E
Sbjct: 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 164 QF-ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
+F SM Y +N V VY +TN +F + ++E + + +P +LV NK DL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 139
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNK---TNVNEMFAEIVREM 266
+VPT Q A + P E SAKN +V +F + ++
Sbjct: 140 -RSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 150 bits (381), Expect = 2e-45
Identities = 55/164 (33%), Positives = 85/164 (51%), Gaps = 6/164 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
FK++++G GVGKS+L ++F F Y TI DF + +E++ L+I DTAG E
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F ++ Y + G +VVY +T+ +F ++K+ + E+ + V +LV NK D
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN---CDDVCRILVGNKNDD- 125
Query: 223 SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
++ V T D A G E SAK NV EMF I +
Sbjct: 126 PERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 150 bits (380), Expect = 3e-45
Identities = 59/165 (35%), Positives = 96/165 (58%), Gaps = 6/165 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGT 162
FKV+++G GVGK+ L V+F G F+ + T+ DF K ++VD L++ DTAG
Sbjct: 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDL 221
E+F S+ Y ++ +++Y +TN +F +I+ + E+ V ++L+ NK+D
Sbjct: 71 ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVDS 128
Query: 222 ASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
A H+R V DG+ LA+ +G PF+E SAK NV+ F I +E+
Sbjct: 129 A-HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 150 bits (381), Expect = 4e-45
Identities = 50/174 (28%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV---------- 153
K + LG GVGK+++ Q+ G F K+ T+ DF K +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPI 212
L++ DTAG E+F S+ + ++ GF++++ LTN +F +++ + + + SE I
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQ-LQMHAYSENPDI 130
Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+L NK DL QR V + + LA+ +G P+ E SA N TN++ ++ +
Sbjct: 131 VLCGNKSDL-EDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLI 183
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 148 bits (377), Expect = 1e-44
Identities = 61/165 (36%), Positives = 93/165 (56%), Gaps = 6/165 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
+V+++GS GVGK++L +F F E T+ DF K +E+ L+I DTAG E
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLA 222
+F S+ Y ++ +G ++VY +T TF D+ + MK + SE +LLV NKLD
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDC- 143
Query: 223 SHQREVPTLDGQALAQSW-GCPFIEASAKNKTNVNEMFAEIVREM 266
RE+ G+ AQ G F EASAK+ NV+E+F ++V ++
Sbjct: 144 ETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 148 bits (375), Expect = 4e-44
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 14/174 (8%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIEVDKAPCV---------- 153
K++ LG GVGK+ ++ F K+ T+ DF K + +
Sbjct: 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 154 LEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPI 212
L++ DTAG E+F S+ + ++ GF++++ LT+ +F +++ M + + E I
Sbjct: 86 LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ-LQANAYCENPDI 144
Query: 213 LLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
+L+ NK DL QREV + LA +G P+ E SA NV + ++ +
Sbjct: 145 VLIGNKADL-PDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 197
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 147 bits (373), Expect = 5e-44
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 13/185 (7%)
Query: 92 PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
R K V++G G VGK++L V + + + +Y PT D + + VD P
Sbjct: 8 GGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP 67
Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVP 211
L++ DTAG ++F +R L N F++ +S+ + +FQ++ + R + P
Sbjct: 68 VRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAP 126
Query: 212 ILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMF 259
I+LV + DL ++ VP + LA+ +IE SA + N+ E+F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186
Query: 260 AEIVR 264
+
Sbjct: 187 DAAIV 191
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 147 bits (373), Expect = 7e-44
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 5/165 (3%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTAGTE 163
KV++LG GVGK++L Q+V+ F +Y TI DF KE+ VD ++I DTAG E
Sbjct: 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 164 QFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT--RVKGSERVPILLVANKLD 220
+F S+ + + V+V+ +T +TF+ + E + + E P +++ NK+D
Sbjct: 69 RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 221 LASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVRE 265
L +++ P+ E SAK NV + F I R
Sbjct: 129 L-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 172
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 143 bits (361), Expect = 3e-42
Identities = 52/200 (26%), Positives = 83/200 (41%), Gaps = 45/200 (22%)
Query: 105 FKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVD--------------- 148
+K V+LG VGKS++ ++ F E + TI F + ++
Sbjct: 8 YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67
Query: 149 ----------------------KAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLT 186
+I DTAG E++AS+ LY + +VV+ ++
Sbjct: 68 INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127
Query: 187 NHHTFQDIKQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFI 245
N +T K + +L K S I+LVANK+D + +V L+ Q AQ FI
Sbjct: 128 NSNTLDRAKTWVNQL----KISSNYIIILVANKIDKN--KFQVDILEVQKYAQDNNLLFI 181
Query: 246 EASAKNKTNVNEMFAEIVRE 265
+ SAK TN+ +F + E
Sbjct: 182 QTSAKTGTNIKNIFYMLAEE 201
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 137 bits (347), Expect = 3e-40
Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 7/167 (4%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+ K+VV+G G VGK+ L + F G Y PT+ + + ++ +L + DTAG
Sbjct: 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAG 80
Query: 162 TEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKL 219
E++ +R L + ++ +++ N +F +I E+ + +LV K+
Sbjct: 81 QEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHY---IDTAKTVLVGLKV 137
Query: 220 DLAS-HQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
DL +V +G L Q GC +IEAS+ K +NE+F + V
Sbjct: 138 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 136 bits (343), Expect = 6e-40
Identities = 61/169 (36%), Positives = 95/169 (56%), Gaps = 6/169 (3%)
Query: 102 MREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTI-EDFYRKEIEVDKAPCVLEILDTA 160
+ K+V+LG VGKS++ ++FVS F E +PTI F + + +++ EI DTA
Sbjct: 1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELITRVKGSERVPILLVANKL 219
G E+FAS+ Y +N Q +VVY +T +F + +KEL + S+ + I LV NK+
Sbjct: 61 GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKEL--HEQASKDIIIALVGNKI 118
Query: 220 DLA--SHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
D +R+V +G+ LA+ G F E SAK NVN++F I ++
Sbjct: 119 DXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 136 bits (344), Expect = 8e-40
Identities = 51/187 (27%), Positives = 89/187 (47%), Gaps = 17/187 (9%)
Query: 92 PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
R S+ + K VV+G G VGK+ L + + + F E+Y PT+ D Y + V
Sbjct: 6 GRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQ 65
Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSER 209
+L + DTAG E + +R L F++ +S+ N +FQ++ + + EL + +
Sbjct: 66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK---EYAPN 122
Query: 210 VPILLVANKLDL-----------ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNE 257
VP LL+ ++DL ++ + GQ LA+ G C ++E SA + +
Sbjct: 123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
Query: 258 MFAEIVR 264
+F E +
Sbjct: 183 VFDEAII 189
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 134 bits (339), Expect = 4e-39
Identities = 54/176 (30%), Positives = 87/176 (49%), Gaps = 15/176 (8%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
R K V +G G VGK+ L + + S F Y PT+ D + + V+ A L + DTA
Sbjct: 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTA 64
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDI--KQMKELITRVKGSERVPILLVANK 218
G E + +R L + F++ +SL + +++++ K + EL G VPI+LV K
Sbjct: 65 GQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTK 121
Query: 219 LDL---------ASHQREVPTLDGQALAQSWGCP-FIEASAKNKTNVNEMFAEIVR 264
LDL + T+ G+ L + G P +IE S+K++ NV +F +R
Sbjct: 122 LDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 134 bits (340), Expect = 5e-39
Identities = 54/191 (28%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 90 LLPRCSIDNS--FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV 147
L+PR S + F + K VV+G G VGK+ L + + + F +Y PT+ D Y + V
Sbjct: 14 LVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV 73
Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVK 205
D P L + DTAG E + +R L F++ +SL + +F++++ E+
Sbjct: 74 DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVR---H 130
Query: 206 GSERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKT 253
PI+LV KLDL + G A+A+ G ++E SA +
Sbjct: 131 HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQR 190
Query: 254 NVNEMFAEIVR 264
+ +F E +R
Sbjct: 191 GLKTVFDEAIR 201
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 127 bits (322), Expect = 2e-36
Identities = 57/178 (32%), Positives = 86/178 (48%), Gaps = 17/178 (9%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+M K+VV+G G GK+ L + F F E Y PT+ + Y +IEVD L + DTA
Sbjct: 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTA 81
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
G E + +R L + ++ +S+ + + ++I + + E+ VPI+LVANK
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANK 138
Query: 219 LDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEMFAEIVR 264
DL Q V T DG+A+A ++E SAK K V E+F R
Sbjct: 139 KDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR 196
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 124 bits (314), Expect = 4e-35
Identities = 54/197 (27%), Positives = 90/197 (45%), Gaps = 18/197 (9%)
Query: 92 PRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAP 151
+ +R KVV++G GG GK++L + F G F E Y PT+ + Y ++V P
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKP 81
Query: 152 CVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSER 209
L I DTAG + + +R L+ + ++ + +T+ ++F +I E+ K
Sbjct: 82 VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKK--- 138
Query: 210 VPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNE 257
VPI++V K DL + V GQ +A+S G ++E SA+ NV+
Sbjct: 139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHA 198
Query: 258 MFAEIVREMNFNPEKDN 274
+F E + N
Sbjct: 199 VFQEAAEVA-LSSRGRN 214
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 119 bits (300), Expect = 3e-33
Identities = 55/191 (28%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 88 TDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEV 147
+ L+PR S + K+V++G G GK+ L + F F E Y PT+ + Y +IEV
Sbjct: 12 SGLVPRGSHMAAI---RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV 68
Query: 148 DKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVK 205
D L + DTAG E + +R L + ++ +S+ + + ++I + E+
Sbjct: 69 DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK---H 125
Query: 206 GSERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKT 253
VPI+LV NK DL Q V + +G+ +A ++E SAK K
Sbjct: 126 FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 254 NVNEMFAEIVR 264
V E+F R
Sbjct: 186 GVREVFEMATR 196
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 119 bits (300), Expect = 1e-32
Identities = 27/153 (17%), Positives = 57/153 (37%), Gaps = 10/153 (6%)
Query: 123 QFVSGCFMEKYDPTIEDFYRKEIEVDK--APCVLEILDTAGTEQFASMRDLYIKNGQ--- 177
+F+ + + T Y K K + L T + +G+
Sbjct: 104 EFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLV 163
Query: 178 -GFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQ 234
GF++ ++ F D + + + PI++V K D +R +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEG-VERYIRDAHTF 222
Query: 235 ALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
AL++ +E SA++ NV+ F+ +V+ ++
Sbjct: 223 ALSK-KNLQVVETSARSNVNVDLAFSTLVQLID 254
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 117 bits (294), Expect = 2e-32
Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 17/178 (9%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+ + K VV+G G VGK+ L + + + F +Y PT+ D Y + VD P L + DTA
Sbjct: 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTA 61
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
G E + +R L ++ +SL + +F++++ E+ PI+LV K
Sbjct: 62 GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTK 118
Query: 219 LDL-----------ASHQREVPTLDGQALAQSWG-CPFIEASAKNKTNVNEMFAEIVR 264
LDL + G A+A+ G ++E SA + + +F E +R
Sbjct: 119 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR 176
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 116 bits (292), Expect = 4e-32
Identities = 33/177 (18%), Positives = 69/177 (38%), Gaps = 18/177 (10%)
Query: 104 EFKVVVLGSGGVGKSALTVQFVSGCF--MEKYDPTIE-DFYRKEIEVDKAPCV---LEIL 157
K++++G+ G GK+ L Q + + T+ D I++ L +
Sbjct: 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHT-FQDIKQ-MKELITRVKGSERVPILLV 215
D AG E+F S ++ ++ VY L+ +K + + R + P++LV
Sbjct: 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKAR---ASSSPVILV 118
Query: 216 ANKLDLAS--HQREVPTLDGQALAQSWGCPFI-----EASAKNKTNVNEMFAEIVRE 265
LD++ ++ + + L G P I + + + ++ I+ E
Sbjct: 119 GTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 113 bits (284), Expect = 6e-31
Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
K+VV+G GK+AL F CF E Y PT+ + Y E+D L + DT+G+ +
Sbjct: 9 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 68
Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANKLDL-- 221
++R L + ++ + ++ T + + E+ +LLV K DL
Sbjct: 69 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRT 125
Query: 222 ---------ASHQREVPTLDGQALAQSWGC-PFIEASAK-NKTNVNEMFAEIVR 264
Q V G +A+ G +IE SA ++ +V ++F
Sbjct: 126 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATL 179
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 118 bits (298), Expect = 1e-30
Identities = 30/184 (16%), Positives = 63/184 (34%), Gaps = 17/184 (9%)
Query: 93 RCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE-DFYRKEIE----- 146
R + ++E KV ++G G GK++L Q + F K T + K+
Sbjct: 30 RSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGL 89
Query: 147 ---VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ-MKELIT 202
+ C+ D G E + ++ ++++ T + ++ +
Sbjct: 90 ENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEK 146
Query: 203 RVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEI 262
S P+++V NK+D + + + F S KN V + +
Sbjct: 147 YGGKS---PVIVVMNKIDE-NPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSL 202
Query: 263 VREM 266
+
Sbjct: 203 KSAV 206
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 112 bits (283), Expect = 1e-30
Identities = 48/190 (25%), Positives = 79/190 (41%), Gaps = 18/190 (9%)
Query: 90 LLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDK 149
L+PR S + + K+VV+G GK+AL F CF E Y PT+ + Y E+D
Sbjct: 14 LVPRGSHMDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDT 73
Query: 150 APCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGS 207
L + DT+G+ + ++R L + ++ + ++ T + + E+ +
Sbjct: 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ---EFC 130
Query: 208 ERVPILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTN- 254
+LLV K DL Q V G +A+ G +IE SA N
Sbjct: 131 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENS 190
Query: 255 VNEMFAEIVR 264
V ++F
Sbjct: 191 VRDIFHVATL 200
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 111 bits (279), Expect = 7e-30
Identities = 36/193 (18%), Positives = 76/193 (39%), Gaps = 18/193 (9%)
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTA 160
+ K+V++G GK+A+ C+ E Y PT+ + Y +E ++ L + DT+
Sbjct: 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTS 83
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVANK 218
G+ + ++R L + ++ + ++ T + E++ +LL+ K
Sbjct: 84 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLIGCK 140
Query: 219 LDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAK-NKTNVNEMFAEIVRE 265
DL Q + G A+A+ G ++E SA ++ +++ +F
Sbjct: 141 TDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASML 200
Query: 266 MNFNPEKDNASFC 278
P
Sbjct: 201 CLNKPSPLPQKSP 213
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 91.2 bits (226), Expect = 2e-21
Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 93 RCSIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPC 152
+ K VV+G G VGK+ L + + + F +Y PT+ D Y + VD P
Sbjct: 144 TAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPV 203
Query: 153 VLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQ--MKELITRVKGSERV 210
L + DTAG E + +R L F++ +SL + +F ++ E+
Sbjct: 204 NLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPN---T 260
Query: 211 PILLVANKLDL-----------ASHQREVPTLDGQALAQSWGC-PFIEASAKNKTNVNEM 258
PI+LV KLDL + G A+A+ G ++E SA + + +
Sbjct: 261 PIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 320
Query: 259 FAEIVR 264
F E +R
Sbjct: 321 FDEAIR 326
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 70.9 bits (174), Expect = 5e-15
Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 20/189 (10%)
Query: 95 SIDNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKY-----------DPTIE-DFYR 142
+I+ + FK+V G G GK+ ++++ E + T+ DF
Sbjct: 5 TINFANREINFKIVYYGPGLSGKTTN-LKWIYSKVPEGRKGEMVSLATEDERTLFFDFLP 63
Query: 143 KEIE-VDKAPCVLEILDTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELI 201
+I V + G + + R L ++ G V V + + + M+ +
Sbjct: 64 LDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMR 123
Query: 202 TRVKGS----ERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
+ + VPI++ NK DL V + + P +EA A V E
Sbjct: 124 ENLAEYGLTLDDVPIVIQVNKRDLP-DALPVEMVR-AVVDPEGKFPVLEAVATEGKGVFE 181
Query: 258 MFAEIVREM 266
E+ R +
Sbjct: 182 TLKEVSRLV 190
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 2e-07
Identities = 66/342 (19%), Positives = 101/342 (29%), Gaps = 151/342 (44%)
Query: 12 GGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREM-EIYAYYQGLVT--IEVCH-LLYK 67
GG+GN ++ Y F E+ ++Y Y LV I+ L +
Sbjct: 161 GGQGNTDD--------------Y----F-----EELRDLYQTYHVLVGDLIKFSAETLSE 197
Query: 68 ISSHTASWS-LFV----ILSVFL-----VP-TDLLPRCSIDNSF---------------- 100
+ T +F IL +L P D L I S
Sbjct: 198 LIRTTLDAEKVFTQGLNILE-WLENPSNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAK 254
Query: 101 ----TMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFY---RKEIEV------ 147
T E + + G+ G + +T ++ + E F+ RK I V
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVAIAET------DSWESFFVSVRKAITVLFFIGV 308
Query: 148 ---DKAPCV---LEILDTA--GTEQFAS-M-------------------------RDLYI 173
+ P IL+ + E S M + + I
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 174 --KNG-QGFVV------VYSLTNHHTFQDIKQMKEL-ITRVKGSER--------VPI--- 212
NG + VV +Y L + K L +R+ SER +P+
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLT--LRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 213 ----LLV-ANKL---DLASHQRE-------VP---TLDGQAL 236
LLV A+ L DL + +P T DG L
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL 468
Score = 35.4 bits (81), Expect = 0.023
Identities = 41/298 (13%), Positives = 68/298 (22%), Gaps = 113/298 (37%)
Query: 74 SWSL--FVI----LSV-FLVPTDLLPRCS-IDNSFTMR------------EFKVVV---- 109
++S + L LVPT S + F E
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 110 --LG-------SGGVGKSALTVQFVSGCFMEKY----------------DPT-------- 136
LG VG+ + F Y + T
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 137 IEDFYRKEIEVDKAPCVLE---ILDTAGTEQFASMRDLY-IKNGQGFVVVY-----SLTN 187
I+++ I + + G L I GQG Y L
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNA----QLVAIFGGQGNTDDYFEELRDL-- 176
Query: 188 HHTFQDIKQMKELITRVKGSERVPILLVANKL-DLASHQREVPTLDGQAL-AQSWG---- 241
+ T+ + + +LI A L +L + + Q L W
Sbjct: 177 YQTYHVL--VGDLIKFS-----------AETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 242 --------------CPFIE-ASAKNKTNVNEMFAEIVREMNFNPEKDNASFCWCSSCS 284
CP I + + + + F P + + + S
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAH-------YVVTAKLLGFTPGELRSYLKGATGHS 274
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 48.5 bits (115), Expect = 8e-07
Identities = 27/177 (15%), Positives = 65/177 (36%), Gaps = 18/177 (10%)
Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIE---DFYRKEIEVDKAPCVLEILDTAGT 162
K++++G G GKS++ + + + D + L + D G
Sbjct: 5 KLLLMGRSGSGKSSM-RSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMT-LNLWDCGGQ 62
Query: 163 EQF-----ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV-KGSERVPILLVA 216
+ F +D + Q + V+ + + +DI+ + + ++ K S I ++
Sbjct: 63 DVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122
Query: 217 NKLDLAS-HQREVPTLDGQALAQSWGCPF------IEASAKNKTNVNEMFAEIVREM 266
+K+DL +RE F ++ ++ + +++IV +
Sbjct: 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSL 179
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 47.3 bits (112), Expect = 9e-07
Identities = 26/186 (13%), Positives = 64/186 (34%), Gaps = 19/186 (10%)
Query: 97 DNSFTMREFKVVVLGSGGVGKSALTVQFVSGCFME---KYDPTIEDFYRKEIEVDKAPCV 153
+ F + +++++G GKS++ + T Y+ +I
Sbjct: 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTN-KIYKDDISNSSFVN- 70
Query: 154 LEILDTAGTEQF---ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV 210
+I D G F ++ + + V + + + + K + +
Sbjct: 71 FQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDM 130
Query: 211 PILLVANKLDLASH------QREVPTLDGQALAQS----WGCPFIEASAKNKTNVNEMFA 260
+ +K+D S QR++ LA + F S + + + E F+
Sbjct: 131 NFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFEAFS 189
Query: 261 EIVREM 266
++V+++
Sbjct: 190 KVVQKL 195
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 46.8 bits (112), Expect = 1e-06
Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 36/152 (23%)
Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAGTEQFASMRD--------------LYIKNGQGFVV 181
+ + I +D P L I+DTAG +R+ I+ +
Sbjct: 42 VLRE----HIHIDGMP--LHIIDTAG------LREASDEVERIGIERAWQEIEQADRVLF 89
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
+ T + E I R+ ++PI +V NK D+ + ++G
Sbjct: 90 MVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLGMSEVNGH------- 140
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
I SA+ V+ + + + M F+ +
Sbjct: 141 -ALIRLSARTGEGVDVLRNHLKQSMGFDTNME 171
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 46.0 bits (110), Expect = 6e-06
Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 33/155 (21%)
Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAG---TEQFASMRDL-----------YIKNGQGFVV 181
IE+ DK + DTAG + + +
Sbjct: 271 YIEE----CFIHDKTM--FRLTDTAGLREAG------EEIEHEGIRRSRMKMAEADLILY 318
Query: 182 VYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
+ L ++ +++EL + L VANKLD A++ +A+A G
Sbjct: 319 LLDLGTERLDDELTEIRELKAAHPAA---KFLTVANKLDRAAN----ADALIRAIADGTG 371
Query: 242 CPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNAS 276
I SA N ++ + + + + AS
Sbjct: 372 TEVIGISALNGDGIDTLKQHMGDLVKNLDKLHEAS 406
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 3e-05
Identities = 24/176 (13%), Positives = 54/176 (30%), Gaps = 41/176 (23%)
Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEI------EVDKAPCVLEILDTA 160
V++ G G GK+ + + ++ +I + VLE+L
Sbjct: 153 VLIDGVLGSGKTWVALDVCL-------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK- 204
Query: 161 GTEQFASMRDLYIKNGQGFVVVYSLTNH--HTFQDIKQMKELITRVKGSERVPI-LLVAN 217
L + + S ++H + I ++ + R+ S+ LLV
Sbjct: 205 ----------LLYQIDPNWT---SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-- 249
Query: 218 KLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
L + + + C I + + K + + A ++ +
Sbjct: 250 -LLNVQNAKAWNAFNL-------SCK-ILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Score = 34.8 bits (79), Expect = 0.032
Identities = 47/323 (14%), Positives = 88/323 (27%), Gaps = 90/323 (27%)
Query: 1 MTKSQNKEIVSGGRGNENNLGTIAIEVKSMVLIYSISKFPIPM-GREM-------EIYAY 52
+T + K ++ L ++ VL + + + + + + + +
Sbjct: 298 LTPDEVKSLLL------KYLDCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 53 YQG---LVTIEVC--HL---LYKISSHTASWSLFVILSVF----LVPTDLLPRCSIDNSF 100
IE L Y+ +F LSVF +PT LL D
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR--------KMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 101 TMREFKVVVLGSGGVGKSALTVQFVS------GCFMEKYDP---------TIEDFYRKEI 145
+ V L S + Q ++E +I D Y
Sbjct: 402 SDVMVVVNKL----HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK 457
Query: 146 EVDKAPCVLEILD------------TAG-TEQFASMRDLY----------IKNGQGFVVV 182
D + LD E+ R ++ + +
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 183 YSLTNHHTFQDIKQMKELITRVKGS-ERVPILLVANKLDLASHQREVPTLDGQALAQSWG 241
S+ N T Q +K K I ER+ ++ + + D L +
Sbjct: 518 GSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD---LLR--- 569
Query: 242 CPFIEASAKNKTNVNEMFAEIVR 264
I A+++ E ++ R
Sbjct: 570 ---IALMAEDEAIFEEAHKQVQR 589
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 42.8 bits (101), Expect = 3e-05
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+ +++ G GK++L + + E D + ++D G
Sbjct: 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 101
Query: 163 EQFASMRDLYIKNGQGFV-----VVYSLTNHHTFQDIKQMKEL-----ITRVKGSERVPI 212
+ Y+K FV +V S + + L IT + I
Sbjct: 102 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE--FLVDILSITESSCENGIDI 159
Query: 213 LLVANKLDL 221
L+ NK +L
Sbjct: 160 LIACNKSEL 168
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 42.4 bits (100), Expect = 4e-05
Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCV-LEILDTAG 161
+ V+ +G GK+ L V+ ++G + + +I +V+ L ++D G
Sbjct: 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSIT-DSSAIYKVNNNRGNSLTLIDLPG 63
Query: 162 TEQF-ASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQ--MKELITRVKGSERVPILLVAN 217
E + D + + + V VV S +D+ + + LI + +L+ N
Sbjct: 64 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123
Query: 218 KLDL 221
K D+
Sbjct: 124 KQDI 127
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 41.5 bits (98), Expect = 8e-05
Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 4/122 (3%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
F +E KV+++G GK+ + QF + PTI +EI ++ + D
Sbjct: 12 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINN--TRFLMWDI 67
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKL 219
G E S + Y N + +VV T+ ++ + + + +L+ ANK
Sbjct: 68 GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQ 127
Query: 220 DL 221
D+
Sbjct: 128 DV 129
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 41.3 bits (98), Expect = 9e-05
Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 102 MREFKVVVLGSGGVGKS----ALT--VQFV---SGCFMEKYDPTIEDFYRKEIEVDKAPC 152
M+ +++ ++G+ VGKS ALT ++ G T+E +KE E +
Sbjct: 1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVE---KKEGEFEYNGE 50
Query: 153 VLEILDTAGT---------EQFASMRDLYIKNGQ--GFVVVYSLTN-----HHTFQDIKQ 196
+++D G E A RD YI N + V + T + T Q
Sbjct: 51 KFKVVDLPGVYSLTANSIDEIIA--RD-YIINEKPDLVVNIVDATALERNLYLTLQ---- 103
Query: 197 MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVN 256
+ E+ +LL NK+DLA +D L + G + SA K +
Sbjct: 104 LMEM--------GANLLLALNKMDLAKSLGI--EIDVDKLEKILGVKVVPLSAAKKMGIE 153
Query: 257 EMFAEIVR 264
E+ I
Sbjct: 154 ELKKAISI 161
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 40.6 bits (96), Expect = 2e-04
Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 62/194 (31%)
Query: 101 TMREFKVVVLGSGGVGKS----ALT--VQFV---SGCFMEKYDPTIEDFYRKEIEVDKAP 151
M+ +++ ++G+ VGKS ALT ++ G T+E +KE E +
Sbjct: 4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV-------TVE---KKEGEFEYNG 53
Query: 152 CVLEILDTAGT---------EQFASMRDLYIKNGQGFVVV------------YSLTNHHT 190
+++D G E A RD YI N + +VV Y LT
Sbjct: 54 EKFKVVDLPGVYSLTANSIDEIIA--RD-YIINEKPDLVVNIVDATALERNLY-LTL--- 106
Query: 191 FQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAK 250
Q+ E+ +LL NK+DLA +D L + G + SA
Sbjct: 107 -----QLMEM--------GANLLLALNKMDLAKSLGI--EIDVDKLEKILGVKVVPLSAA 151
Query: 251 NKTNVNEMFAEIVR 264
K + E+ I
Sbjct: 152 KKMGIEELKKAISI 165
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 41.6 bits (98), Expect = 2e-04
Identities = 13/76 (17%), Positives = 29/76 (38%), Gaps = 7/76 (9%)
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
+++ K E +P ++V NK+D+ + E + + SA K ++
Sbjct: 130 DDVVNLFKEME-IPFVVVVNKIDVLGEKAE---ELKGLYESRYEAKVLLVSALQKKGFDD 185
Query: 258 MFAEIVREMNFNPEKD 273
+ I + P +
Sbjct: 186 IGKTISEIL---PGDE 198
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 40.8 bits (96), Expect = 3e-04
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
Q+ E +P+ + N +D+ Q + ++ L+ G P + SA +T V
Sbjct: 102 QLIET--------GIPVTIALNMIDVLDGQGK--KINVDKLSYHLGVPVVATSALKQTGV 151
Query: 256 NEMFAEIVREMNFNPEK 272
+++ +
Sbjct: 152 DQVVKKAAHTTTSTVGD 168
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 40.7 bits (96), Expect = 3e-04
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
++ E+ ++L +D A ++ +D L + G P + S+ +
Sbjct: 105 EILEM--------EKKVILAMTAIDEA--KKTGMKIDRYELQKHLGIPVVFTSSVTGEGL 154
Query: 256 NEMFAEIVR 264
E+ +IV
Sbjct: 155 EELKEKIVE 163
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 40.8 bits (96), Expect = 3e-04
Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
Q+ EL +P ++ N LD+A Q ++ AL+ GCP I + +
Sbjct: 107 QLLEL--------GIPCIVALNMLDIAEKQNI--RIEIDALSARLGCPVIPLVSTRGRGI 156
Query: 256 NEMFAEIVR 264
+ I R
Sbjct: 157 EALKLAIDR 165
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake,
cell inner membrane, cell GTP-binding, ION transport,
membrane; 2.50A {Legionella pneumophila}
Length = 256
Score = 40.4 bits (95), Expect = 3e-04
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 196 QMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNV 255
Q+ EL P+++ N +D+A H+ ++D + L GC I A +
Sbjct: 105 QLFEL--------GKPVVVALNMMDIAEHRGI--SIDTEKLESLLGCSVIPIQAHKNIGI 154
Query: 256 NEMFAEIVR 264
+ ++
Sbjct: 155 PALQQSLLH 163
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 39.0 bits (91), Expect = 7e-04
Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 17/129 (13%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+ +++ G GK++L + + E D + ++D G
Sbjct: 11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPL----SAADYDGSGVTLVDFPGH 65
Query: 163 EQFASMRDLYIKNGQGFV-----VVYSLTNHHTFQDIKQMKEL-----ITRVKGSERVPI 212
+ Y+K FV +V S + + L IT + I
Sbjct: 66 VKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAE--FLVDILSITESSCENGIDI 123
Query: 213 LLVANKLDL 221
L+ NK +L
Sbjct: 124 LIACNKSEL 132
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 38.4 bits (90), Expect = 0.001
Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
F ++ +++++G GK+ + + G + PTI F + +E + D
Sbjct: 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKN--ICFTVWDV 80
Query: 160 AGTEQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANK 218
G ++ + Y +N QG + VV S + Q+ + + + +L+ ANK
Sbjct: 81 GGQDKIRPLWRHYFQNTQGLIFVVDS-NDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 219 LDLA 222
D+
Sbjct: 140 QDMP 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 38.8 bits (91), Expect = 0.001
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 206 GSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEA---SAKNKTNVNEMFAEI 262
G PIL+ NK+D + + L++ P + SA +TN+ + +I
Sbjct: 289 GVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKI 348
Query: 263 VREM 266
+
Sbjct: 349 YQLA 352
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 37.6 bits (88), Expect = 0.002
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 35/134 (26%)
Query: 157 LDTAGTEQFASMR-------DLYIKNGQGFVVVYSLTNHHTFQD---IKQMKELITRVKG 206
LDT G E F +MR D+ I +VV + D + Q E I K
Sbjct: 60 LDTPGHEAFTTMRARGAQVTDIVI------LVVAA--------DDGVMPQTVEAINHAKA 105
Query: 207 SERVPILLVANKLDL--ASHQREVPTLDGQAL-AQSWG--CPFIEASAKNKTNVNEMFAE 261
+ VPI++ NK+D A+ R + L L + WG F + SAK K ++ +
Sbjct: 106 AN-VPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEM 164
Query: 262 I-----VREMNFNP 270
I + E+ NP
Sbjct: 165 ILLVSEMEELKANP 178
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 37.8 bits (89), Expect = 0.002
Identities = 12/78 (15%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIE---ASAKNK 252
+ ++ +++ + P++L NK+D + ++ Q F++ SA+
Sbjct: 106 EMVLNKLREG-KAPVILAVNKVDNVQEKADL-----LPHLQFLASQMNFLDIVPISAETG 159
Query: 253 TNVNEMFAEIVREMNFNP 270
NV+ + A + + +
Sbjct: 160 LNVDTIAAIVRKHLPEAT 177
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 37.2 bits (87), Expect = 0.002
Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 98 NSFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
+ E ++ ++G GK+ SG F E PT+ F ++I +++
Sbjct: 16 PRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTV-GFNMRKITKGN--VTIKLW 72
Query: 158 DTAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSER---VPILL 214
D G +F SM + Y + V + + + K EL + + +P+L+
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKN--EL-HNLLDKPQLQGIPVLV 129
Query: 215 VANKLDL 221
+ NK DL
Sbjct: 130 LGNKRDL 136
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVR 264
I+LV NK DL + +D + + + G P I +AK V E+ I
Sbjct: 111 NIILVLNKFDLLKKKGA--KIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIAL 162
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 38.3 bits (90), Expect = 0.002
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 38/157 (24%)
Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAG----TEQFASMRDL-----------YIKNGQGFV 180
I + EI + I+DTAG T DL I+ +
Sbjct: 281 VISE----EIVIRGIL--FRIVDTAGVRSETN------DLVERLGIERTLQEIEKADIVL 328
Query: 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
V ++ +D ++++ R+K L+V NK+D+ +
Sbjct: 329 FVLDASSPLDEED----RKILERIKN---KRYLVVINKVDVVEK----INEEEIKNKLGT 377
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREMNFNPEKDNASF 277
++ SA + ++ I RE E+ + S
Sbjct: 378 DRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSL 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 36.8 bits (86), Expect = 0.003
Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+E KV+++G GK+ + QF + PTI +EI ++ + D G
Sbjct: 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTI-GSNVEEIVINN--TRFLMWDIGGQ 75
Query: 163 EQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
E S + Y N + + VV S T+ ++ + + + +L+ ANK D+
Sbjct: 76 ESLRSSWNTYYTNTEFVIVVVDS-TDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 36.5 bits (85), Expect = 0.004
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 10/83 (12%)
Query: 195 KQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG---CPFIEASAKN 251
+ + + + +P ++ NKLD + +EV + FI SAK
Sbjct: 112 VEFYQFLRELD----IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKF 167
Query: 252 KTNVNEMFAEIVREMNFNPEKDN 274
N+ + I + E+
Sbjct: 168 GDNIERLKNRIFEVI---RERQG 187
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 36.7 bits (86), Expect = 0.006
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
Query: 198 KELITRVKGSERVPILLVANKLDLASHQREV-PTLDGQALAQSWGCPFIE---ASAKNKT 253
+E+ P+++V NK+D + V P + + + E SA
Sbjct: 111 EEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLI--DEIHKKHP-ELTEIVPISALKGA 167
Query: 254 NVNEMFAEIVREMNFNPE 271
N++E+ I++ + PE
Sbjct: 168 NLDELVKTILKYL---PE 182
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 35.7 bits (83), Expect = 0.006
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 8/124 (6%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
RE ++++LG GK+ + +F PT+ F K +E L I D
Sbjct: 14 QKERELRLLMLGLDNAGKTTILKKFNGEDVDTIS-PTL-GFNIKTLEHRG--FKLNIWDV 69
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE--RVPILLVAN 217
G + S Y ++ G + V + QD ++ EL + + +L+ AN
Sbjct: 70 GGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR--ELQSLLVEERLAGATLLIFAN 127
Query: 218 KLDL 221
K DL
Sbjct: 128 KQDL 131
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 35.6 bits (83), Expect = 0.007
Identities = 26/125 (20%), Positives = 48/125 (38%), Gaps = 8/125 (6%)
Query: 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
S RE ++++LG G GK+ + + G + PTI F + + ++ D
Sbjct: 2 SHMTREMRILILGLDGAGKTTILYRLQVGEVVTTI-PTI-GFNVETVTYKN--LKFQVWD 57
Query: 159 TAGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE--RVPILLVA 216
G Y N + V + K EL+ ++ E + +++ A
Sbjct: 58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKS--ELVAMLEEEELRKAILVVFA 115
Query: 217 NKLDL 221
NK D+
Sbjct: 116 NKQDM 120
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 36.6 bits (84), Expect = 0.007
Identities = 30/174 (17%), Positives = 65/174 (37%), Gaps = 17/174 (9%)
Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166
V+++G GKS++ + V +E +E L +++ G +
Sbjct: 2 VLLMGVRRCGKSSI-CKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYF 60
Query: 167 SM---RDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRV-KGSERVPILLVANKLDLA 222
+ K+ V V + + I + +I K + + I ++ +K+D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEY-INAITNLAMIIEYAYKVNPSINIEVLIHKVDGL 119
Query: 223 S------HQREVPTLDGQALAQS----WGCPFIEASAKNKTNVNEMFAEIVREM 266
S QR++ G+ L + F S + + + E F+ IV+++
Sbjct: 120 SEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFDHS-IYEAFSRIVQKL 172
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 36.3 bits (85), Expect = 0.007
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 16/72 (22%)
Query: 205 KGSERVPILLVANKLDLASHQREVPTLDGQALAQSWG--CPFIEA---SAKNKTNVNEMF 259
+VPILLV NKLD A + +++ P E SA ++ V E+
Sbjct: 113 PLVGKVPILLVGNKLDAAK--------YPEEAMKAYHELLPEAEPRMLSALDERQVAELK 164
Query: 260 AEIVREMNFNPE 271
A+++ M PE
Sbjct: 165 ADLLALM---PE 173
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 35.7 bits (83), Expect = 0.008
Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 4/119 (3%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGT 162
+E ++++LG G GK+ + + G + PTI F + + L + D G
Sbjct: 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK-PTI-GFNVETLSYKN--LKLNVWDLGGQ 72
Query: 163 EQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
Y + + V T+ + L+ + + + +L+ ANK D
Sbjct: 73 TSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQ 131
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 35.9 bits (84), Expect = 0.011
Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 40/147 (27%)
Query: 136 TIEDFYRKEIEVDKAPCVLEILDTAG---------------TEQFASMRDLYIKNGQGFV 180
+E ++ V P +++LDTAG + Q A+ DL +
Sbjct: 262 VVES----QLVVGGIP--VQVLDTAGIRETSDQVEKIGVERSRQAANTADLVL------- 308
Query: 181 VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSW 240
+ T D +E+ +VK P++LV NK+DL Q +
Sbjct: 309 LTIDAATGWTTGD----QEIYEQVKH---RPLILVMNKIDLVEKQLITSLEYPEN----- 356
Query: 241 GCPFIEASAKNKTNVNEMFAEIVREMN 267
+ +A K ++ + I+ +
Sbjct: 357 ITQIVHTAAAQKQGIDSLETAILEIVQ 383
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 35.2 bits (82), Expect = 0.016
Identities = 8/52 (15%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 207 SERVPILLVANKLDLASHQREVPTLDGQ-ALAQSWGCPFIEASAKNKTNVNE 257
+ + ++ K+DL Q T+ ++ G S+K++ ++ +
Sbjct: 115 ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD 166
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 34.5 bits (80), Expect = 0.018
Identities = 22/116 (18%), Positives = 46/116 (39%), Gaps = 4/116 (3%)
Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
+++++G GK+ + + G + PTI F + +E + D G ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTI-GFNVETVEYKN--ISFTVWDVGGQDKI 57
Query: 166 ASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVANKLDL 221
+ Y +N QG + V + + ++ + +L+ ANK DL
Sbjct: 58 RPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 34.8 bits (81), Expect = 0.021
Identities = 11/51 (21%), Positives = 25/51 (49%)
Query: 207 SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
+V ++V NK+DL + + + ++ + G ++ SAK ++E
Sbjct: 108 YFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDE 158
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 34.1 bits (79), Expect = 0.023
Identities = 30/124 (24%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 99 SFTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILD 158
S +E ++++LG GK+ L Q S PT F K ++ L + D
Sbjct: 11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQ-GFNIKSVQSQG--FKLNVWD 66
Query: 159 TAGTEQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSERVPILLVAN 217
G + Y +N + V+ S + F++ Q + + VP+L+ AN
Sbjct: 67 IGGQRKIRPYWRSYFENTDILIYVIDS-ADRKRFEETGQELTELLEEEKLSCVPVLIFAN 125
Query: 218 KLDL 221
K DL
Sbjct: 126 KQDL 129
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 34.1 bits (79), Expect = 0.028
Identities = 25/124 (20%), Positives = 46/124 (37%), Gaps = 8/124 (6%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
R+ +V++LG GK+++ + G + PT+ + ++ E+ D
Sbjct: 18 PADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTV-GVNLETLQYKN--ISFEVWDL 73
Query: 160 AGTEQFASMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSE--RVPILLVAN 217
G Y + + V T+ K EL + E + +L+ AN
Sbjct: 74 GGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKH--ELYALLDEDELRKSLLLIFAN 131
Query: 218 KLDL 221
K DL
Sbjct: 132 KQDL 135
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 34.1 bits (78), Expect = 0.042
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
P L+V NK+D+A + + L + + G I+ SA T ++ + EI++ +
Sbjct: 282 PFLVVINKIDVAD-EENIKRL--EKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPLA 338
Query: 271 EK 272
EK
Sbjct: 339 EK 340
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.0 bits (76), Expect = 0.10
Identities = 9/51 (17%), Positives = 22/51 (43%)
Query: 207 SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
+ +V L+V NK+DL + + + ++ G + S+ + +
Sbjct: 158 TLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKP 208
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 31.5 bits (72), Expect = 0.18
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 103 REFKVVVLGSGGVGKSALTVQFVSGCFM-EKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+E V+ LG GK+ + + + PTI F ++ + + D +G
Sbjct: 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTI-GFSIEKFKSSS--LSFTVFDMSG 76
Query: 162 TEQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSE----RVPILLVA 216
++ ++ + Y K GQ + V+ S ++ K+ EL T + + R+PIL A
Sbjct: 77 QGRYRNLWEHYYKEGQAIIFVIDS-SDRLRMVVAKE--ELDTLLNHPDIKHRRIPILFFA 133
Query: 217 NKLDL 221
NK+DL
Sbjct: 134 NKMDL 138
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 31.5 bits (72), Expect = 0.18
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
+ K+V LG GK+ L + + PT+ +E+ + D
Sbjct: 21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH-PTSEELTIAG--MTFTTFDL 76
Query: 160 AGTEQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSER---VPILLV 215
G Q + Y+ G V +V +H + K+ EL + E VPIL++
Sbjct: 77 GGHIQARRVWKNYLPAINGIVFLVDC-ADHERLLESKE--EL-DSLMTDETIANVPILIL 132
Query: 216 ANKLDL 221
NK+D
Sbjct: 133 GNKIDR 138
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 31.3 bits (71), Expect = 0.23
Identities = 7/67 (10%), Positives = 16/67 (23%), Gaps = 4/67 (5%)
Query: 211 PILLVANKLDLASHQREVPT----LDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
I++ NK+D + + F S V + +
Sbjct: 144 SIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELL 203
Query: 267 NFNPEKD 273
+ +
Sbjct: 204 KNDQAES 210
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A
{Streptococcus pyogenes}
Length = 152
Score = 30.5 bits (68), Expect = 0.33
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 3 KSQNKEIVSGGRGNENNLGTIAIEVKSMVLIYSISKFPIPMGREMEIYAYYQGLVT 58
++ + I G IAI + ++ I S F PMGRE+ Y L+
Sbjct: 85 QAVDYNITQKGTDTNGTTLDIAISLPTVNSIIRGSMFVEPMGREVVFYLSASELIQ 140
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 31.0 bits (71), Expect = 0.34
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 207 SERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNE 257
+ ++V NK+DL ++ + S P ++ SAK + E
Sbjct: 113 KNELETVMVINKMDLYDED-DLRKVRELEEIYSGLYPIVKTSAKTGMGIEE 162
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 30.9 bits (69), Expect = 0.37
Identities = 31/154 (20%), Positives = 50/154 (32%), Gaps = 43/154 (27%)
Query: 104 EFKVVVLGSGGVGKSAL--------TVQFVSGCFMEKYDPTIEDF-YRKEIEVDKAPCVL 154
EF ++V+G G+GKS L + T++ + I+ +L
Sbjct: 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67
Query: 155 EILDTAG------------------TEQFAS--------MRDLYIKNG-QGFVVVYSLTN 187
I+DT G +F R N Q + + +
Sbjct: 68 TIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127
Query: 188 HH-TFQDIKQMKELITRVKGSERVPILLVANKLD 220
H DI+ MK L E+V I+ + K D
Sbjct: 128 HGLKPLDIEFMKRL------HEKVNIIPLIAKAD 155
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 31.2 bits (70), Expect = 0.38
Identities = 21/127 (16%), Positives = 32/127 (25%), Gaps = 17/127 (13%)
Query: 104 EFKVVVLGSGGVGKS----ALTVQFVS--GCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
V V G G GKS L G + + + P V
Sbjct: 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP--YKHPNIPNV-VFW 125
Query: 158 DTAGTEQFASMRDLYIKNGQGF---VVVYSLTNHHTFQDIKQMKELITRVKGSERVPILL 214
D G D Y++ + + + DI K + +
Sbjct: 126 DLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAIS-----MMKKEFYF 180
Query: 215 VANKLDL 221
V K+D
Sbjct: 181 VRTKVDS 187
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 30.4 bits (69), Expect = 0.44
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 233 GQALAQSWGCPFIEASA--KNKTNVNEMFAEI 262
L++ P I+ S+ K+ ++F
Sbjct: 18 AAKLSKELKYPIIKGSSFELAKSGNEKLFEHF 49
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 31.3 bits (71), Expect = 0.47
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 107 VVVLGSGGVGKSALTVQFV 125
V + G G GKS L + V
Sbjct: 150 VTIYGMAGCGKSVLAAEAV 168
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 30.6 bits (70), Expect = 0.54
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
P ++VANK+D+ + + P SA + + E+ E+ ++ P
Sbjct: 276 PQIIVANKMDMPEAAENLEAF---KEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 332
Query: 271 EKD 273
E
Sbjct: 333 EFP 335
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 30.3 bits (68), Expect = 0.56
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 104 EFKVVVLGSGGVGKSAL--TV----QFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
++V+G GGVGKS+ ++ F L I+
Sbjct: 39 SLTILVMGKGGVGKSSTVNSIIGERVVSISPFQ----SEGPRPVMVSRSRAGFT--LNII 92
Query: 158 DTAG 161
DT G
Sbjct: 93 DTPG 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 29.9 bits (68), Expect = 0.71
Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 12/126 (9%)
Query: 100 FTMREFKVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDT 159
+ K++ LG GK+ L + PT +E+ + D
Sbjct: 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTW-HPTSEELAIGN--IKFTTFDL 74
Query: 160 AGTEQFASMRDLYIKNGQGFV-VVYSLTNHHTFQDIKQMKELITRVKGSER---VPILLV 215
G Q + Y G V +V + + F + + EL + VP +++
Sbjct: 75 GGHIQARRLWKDYFPEVNGIVFLVDA-ADPERFDEARV--EL-DALFNIAELKDVPFVIL 130
Query: 216 ANKLDL 221
NK+D
Sbjct: 131 GNKIDA 136
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 30.2 bits (69), Expect = 0.72
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 55/146 (37%)
Query: 157 LDTAGTEQFASMR-------DLYIKNGQGFVVVYSLTNHHTFQD---IKQMKELITRVKG 206
LDT G F SMR D+ + +VV + D + Q E I K
Sbjct: 56 LDTPGHAAFTSMRARGAQATDIVV------LVVAA--------DDGVMPQTIEAIQHAKA 101
Query: 207 SERVPILLVANKLD------------LASHQREVPTLDGQALAQSWG--CPFIEASAKNK 252
++ VP+++ NK+D L+ + L + WG F+ SAK
Sbjct: 102 AQ-VPVVVAVNKIDKPEADPDRVKNELSQYG---------ILPEEWGGESQFVHVSAKAG 151
Query: 253 TNVNEMF------AEIVREMNFNPEK 272
T ++E+ AE V E+ +
Sbjct: 152 TGIDELLDAILLQAE-VLELKAVRKG 176
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.81
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 29/55 (52%)
Query: 195 KQ-MKELITRVKGSERVPILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEAS 248
KQ +K+L +K L A+ D A P ALA I+A+
Sbjct: 19 KQALKKLQASLK--------LYAD--DSA------P-----ALA-------IKAT 45
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 29.8 bits (67), Expect = 0.84
Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 104 EFKVVVLGSGGVGKSAL--TV----QFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEIL 157
V+VLG GGVGKS+ ++ F + + I+
Sbjct: 36 SMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQ----AEGLRPVMVSRTMGGFT--INII 89
Query: 158 DTAG 161
DT G
Sbjct: 90 DTPG 93
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 1.3
Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 7/79 (8%)
Query: 154 LEILDTAGTEQFASMRDL---YIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERV 210
+EI+D+ G + +L Y+ N + V + T + + +
Sbjct: 176 IEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCT----LGERRYLENYIKGRGL 231
Query: 211 PILLVANKLDLASHQREVP 229
+ + N D P
Sbjct: 232 TVFFLVNAWDQVRESLIDP 250
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1
c.37.1.8 d.242.1.1
Length = 416
Score = 29.4 bits (67), Expect = 1.4
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNP 270
P L+ NK+DL + V L G + SA + + + + P
Sbjct: 271 PSLVALNKVDLLE-EEAVKAL--ADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP 327
Query: 271 EKD 273
+
Sbjct: 328 PPE 330
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein
COOC; Zn-bound dimer, nickel binding protein, ATPase;
1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A*
3kje_A 3kji_A*
Length = 254
Score = 28.6 bits (64), Expect = 2.4
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 106 KVVVLGSGGVGKSALT 121
K+ V G GGVGK+ +
Sbjct: 2 KLAVAGKGGVGKTTVA 17
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 28.6 bits (63), Expect = 2.9
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 93 RCSIDNSFTMREFKVVVLGSGGVGKSAL 120
I+ + V++LGSG V + +
Sbjct: 14 SGHIEGRHMGK--NVLLLGSGFVAQPVI 39
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.2 bits (62), Expect = 2.9
Identities = 33/156 (21%), Positives = 53/156 (33%), Gaps = 46/156 (29%)
Query: 104 EFKVVVLGSGGVGKSAL--TVQFVSGCFMEKYDPTIEDFYRK---------EIEVDKAPC 152
EF ++V+G G+GKS L ++ F++ + E+ + + EIE
Sbjct: 18 EFTLMVVGESGLGKSTLINSL-FLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKL 76
Query: 153 VLEILDTAG------------------TEQFASM--------RDLYIKNGQGFVVVYSLT 186
L ++DT G EQF R I N +
Sbjct: 77 RLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 136
Query: 187 NHHTFQ--DIKQMKELITRVKGSERVPILLVANKLD 220
H + D+ MK + +V I+ V K D
Sbjct: 137 FGHGLKPLDVAFMKAI------HNKVNIVPVIAKAD 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 28.0 bits (62), Expect = 3.1
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 102 MREFKVVVLGSGGVGKSALTVQ------FVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLE 155
+ ++V++G G GKSA F SG + + ++ + L
Sbjct: 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAK---SITKKCEKRSSSWKETE--LV 81
Query: 156 ILDTAG 161
++DT G
Sbjct: 82 VVDTPG 87
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 28.4 bits (63), Expect = 3.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 87 PTDLLPRCSIDNSFTMREFKVVVLGSGGVGKSALTVQ 123
T S+ +E +V++G+ G GKS L++
Sbjct: 23 TTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSID 59
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.8 bits (61), Expect = 3.4
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 131 EKYDPTIEDFYRKEIE-VDKAPCVLEILDTAGTEQFASMRD 170
EK +E++ +++ E V+K +I + + F D
Sbjct: 114 EKAKKDLEEWNQRQSEQVEKN----KINNRIADKAFYQQPD 150
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 27.1 bits (60), Expect = 3.7
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 106 KVVVLGSGGVGKSA 119
+ V+G+G +G+
Sbjct: 7 NICVVGAGKIGQMI 20
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional
repressor, solution structure, STRU genomics; NMR
{Mycobacterium tuberculosis}
Length = 118
Score = 27.0 bits (60), Expect = 3.8
Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 12/67 (17%)
Query: 152 CVLEILDTAGTEQ------FASMRDL----YIKNGQGFVVVYSLTNHHTFQDIKQMKELI 201
++ G + + +R G+ V Y+L + H + + ++ +++
Sbjct: 36 YPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGR--QVRYALADSHLARALGELVQVV 93
Query: 202 TRVKGSE 208
V +
Sbjct: 94 LAVDTDQ 100
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO
proteins, formins, armadillo repeat, G-protein, GTPase,
alternative splicing; HET: GNP; 2.70A {Mus musculus}
PDB: 1z2c_B*
Length = 383
Score = 27.9 bits (61), Expect = 3.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 255 VNEMFAEIVREMNFNPEK 272
V +F +++ +MN N EK
Sbjct: 15 VLVLFEQMLVDMNLNEEK 32
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 27.6 bits (62), Expect = 4.0
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 213 LLVANKLDLASH-QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREM 266
L+V NK+DLA ++ ++ A + + S K +++ I + +
Sbjct: 168 LIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSV 222
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 27.3 bits (60), Expect = 4.9
Identities = 20/168 (11%), Positives = 48/168 (28%), Gaps = 23/168 (13%)
Query: 107 VVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQFA 166
V++ G +GKS L++ + D I+ + P + +
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCP--------SVANGYI 70
Query: 167 SMRDLYIKNGQGFVVVYSLTNHHTFQDIKQMKELITRVKGSERVPIL-LVANKLDLASHQ 225
+ + I + + ++ N H + + + + L L + +
Sbjct: 71 LITGIGIIDVPKLFGLDAVVNQHEVHLSISLVKPEKMPLLDDPLNPLYRTEIILGINVPK 130
Query: 226 REVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMNFNPEKD 273
P G+ L IE +N ++ ++
Sbjct: 131 ILFPIHPGRNLP-----LLIETLVRN---------HRLKMEGYDSSHH 164
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional
regulation, winged HTH protein, transcription repressor;
2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A
2kjb_A 2kjc_A
Length = 106
Score = 26.5 bits (59), Expect = 4.9
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 152 CVLEILDTAGTEQ------FASMRDLYIKNG--QGFVVVYSLTNHHTFQDIKQMKELITR 203
V I Q ++ +++ QG ++YSL + H +KQ
Sbjct: 41 SVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANH 100
Query: 204 VK 205
K
Sbjct: 101 PK 102
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 27.4 bits (61), Expect = 5.1
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 9/65 (13%)
Query: 213 LLVANKLDLASHQREVPTLDGQ---AL------AQSWGCPFIEASAKNKTNVNEMFAEIV 263
++ NK D +R + AL + +W P + S + ++ +++ I
Sbjct: 197 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIE 256
Query: 264 REMNF 268
+
Sbjct: 257 DHRSK 261
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 26.1 bits (57), Expect = 5.6
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 257 EMFAEIVREMNFNPEKDNASFCWCSSCS 284
+F + + E + F WC+ CS
Sbjct: 8 ALFHKKLTEGVLMRDPK---FLWCAQCS 32
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 27.6 bits (61), Expect = 5.7
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 89 DLLPRCSIDNSFTMREFKVV-VLGSGGVGKSALTV 122
DL ++ + T K + V G GGVGK+ +
Sbjct: 2 DLTVEPNLHSLITSTTHKWIFVGGKGGVGKTTSSC 36
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 27.3 bits (60), Expect = 6.0
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 106 KVVVLGSGGVGKSALTVQFVSGCFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAGTEQF 165
+ V+LG G VG++ + + F TI +++V + V L + +
Sbjct: 15 RFVILGFGCVGQALMPLIFEKFDIKPS-QVTIIAAEGTKVDVAQQYGVSFKLQQITPQNY 73
Query: 166 ASMRDLYIKNGQGFVV 181
+ ++ F++
Sbjct: 74 LEVIGSTLEEN-DFLI 88
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 27.4 bits (62), Expect = 6.1
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPF-IEASAKNKTNVNEMFAEIVREMNFN 269
P++L NKLD + + D +L +G P+ I S + + ++ +
Sbjct: 113 PVVLAVNKLD--NTEMRANIYDFYSLG--FGEPYPI--SGTHGLGLGDLLDAVAEHFKNI 166
Query: 270 PEKD 273
PE
Sbjct: 167 PETK 170
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 27.6 bits (60), Expect = 6.3
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 101 TMREFKVVVLGSGGVGKSAL 120
+ V++LGSG V + L
Sbjct: 2 ATK--SVLMLGSGFVTRPTL 19
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 26.9 bits (59), Expect = 7.9
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 106 KVVVLGSGGVGKSA 119
KV++LG+G +G++
Sbjct: 18 KVLILGAGNIGRAI 31
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 27.1 bits (61), Expect = 8.5
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSWGCPF-IEASAKNKTNVNEMFAEIVREMNFN 269
+LVANK + + +L +G P + SA++ N++ M I++++
Sbjct: 112 DTILVANKAENLREFEREVKPELYSLG--FGEPIPV--SAEHNINLDTMLETIIKKL--- 164
Query: 270 PEKD 273
EK
Sbjct: 165 EEKG 168
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 26.4 bits (59), Expect = 8.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 213 LLVANKLDLASH-QREVPTLDGQALAQSWGCPFIEASAKNKTNVNEMFAEIVREMN 267
L+V NK+ LA +V + A + IE K E + +N
Sbjct: 158 LIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN 213
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 26.6 bits (58), Expect = 9.2
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 104 EFKVVVLGSGGVGKSALTVQFVSG-CFMEKYDPTIEDFYRKEIEVDKAPCVLEILDTAG 161
+++++G G GKSA + F + T C +E++DT
Sbjct: 21 TRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPD 79
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 26.5 bits (59), Expect = 9.5
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 17/59 (28%)
Query: 211 PILLVANKLDLASHQREVPTLDGQALAQSW-------GCPFIEASAKNKTNVNEMFAEI 262
P +++ NK D A A+ Q W G + ++ N +N++
Sbjct: 52 PRIMLLNKADKAD----------AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPAS 100
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 26.4 bits (58), Expect = 9.8
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 107 VVVLGSGGVGKSALTVQFVS 126
V++ G G GK+ QF+
Sbjct: 33 VLLTGGTGTGKTTFAAQFIY 52
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.398
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,337,750
Number of extensions: 259872
Number of successful extensions: 1206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 956
Number of HSP's successfully gapped: 184
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)