BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10506
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|B Chain B, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|C Chain C, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
pdb|3K44|D Chain D, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
Length = 146
Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/141 (87%), Positives = 132/141 (93%)
Query: 115 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDY 174
LATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+FSDY
Sbjct: 5 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDY 64
Query: 175 YASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAI 234
YASLGPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLRVSQTI RGGPRSQIA+
Sbjct: 65 YASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIAL 124
Query: 235 PAQGMIEFRDALTDLLEEFGT 255
PAQGMIEFRDALTDLLEEFG
Sbjct: 125 PAQGMIEFRDALTDLLEEFGA 145
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 84/143 (58%), Gaps = 28/143 (19%)
Query: 191 KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLL 250
+L ++++ ++R+YLD+K+N RGRF++V++ I G RSQI + EFRD L+
Sbjct: 4 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAE-IGADGRRSQIYLALSTAAEFRDHLSSFS 62
Query: 251 EEFGT----------EDGGYKVLSLVPH-----------------QVSQTIPRGGPRSQI 283
+ + + EDG K ++ +VSQTI RGGPRSQI
Sbjct: 63 DYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQI 122
Query: 284 AIPAQGMIEFRDALTDLLEEFGT 306
A+PAQGMIEFRDALTDLLEEFG
Sbjct: 123 ALPAQGMIEFRDALTDLLEEFGA 145
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 32/133 (24%)
Query: 69 LATKMLQIQSKRFYLDVKQNRRGRFIKVNNI-------PIAICLNCXXXXXXXLA----- 116
LATKMLQIQSKRFYLDVKQNRRGRFIKV I I + L+ L+
Sbjct: 5 LATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDY 64
Query: 117 -------------------TKMLQIQSKRFYLDVKQNRRGRFIKVAE-VGADGRRSQIFL 156
++M+ +R+YLD+K+N RGRF++V++ + G RSQI L
Sbjct: 65 YASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIAL 124
Query: 157 ALSVAEQFRGHLS 169
+FR L+
Sbjct: 125 PAQGMIEFRDALT 137
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 6 GPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRTA 47
GPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLR +
Sbjct: 69 GPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVS 110
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 19/113 (16%)
Query: 319 RHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLE 378
+ +++++K FY D+ QN RG +++V+E+ G RSQI + EFRD L+ +
Sbjct: 8 KMLQIQSKRFYLDVKQNRRGRFIKVAEIGAD----GRRSQIYLALSTAAEFRDHLSSFSD 63
Query: 379 EFGT----------EDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 421
+ + EDG K E+ M + + +Y D+ +N RG ++RVS+
Sbjct: 64 YYASLGPPNTDNLPEDGKLKSEM-----MIKDYRRYYLDLKENARGRFLRVSQ 111
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 18 KLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNL----LIIYXXXXXXXXXXXX------ 67
+L ++++ ++R+YLD+K+N RGRF++ A++ IY
Sbjct: 4 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSD 63
Query: 68 -----------------XLATKMLQIQSKRFYLDVKQNRRGRFIKVN 97
L ++M+ +R+YLD+K+N RGRF++V+
Sbjct: 64 YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVS 110
>pdb|1EM8|A Chain A, Crystal Structure Of Chi And Psi Subunit Heterodimer From
Dna Pol Iii
pdb|1EM8|C Chain C, Crystal Structure Of Chi And Psi Subunit Heterodimer From
Dna Pol Iii
Length = 147
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 264 SLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFG 305
S VPH ++ PRGG +IA P + RD L L F
Sbjct: 63 SFVPHNLAGEGPRGGAPVEIAWPQKRSSSRRDILISLRTSFA 104
>pdb|3SXU|A Chain A, Structure Of The E. Coli Ssb-Dna Polymerase Iii Interface
Length = 150
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 264 SLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFG 305
S VPH ++ PRGG +IA P + RD L L F
Sbjct: 66 SFVPHNLAGEGPRGGAPVEIAWPQKRSSSRRDILISLRTSFA 107
>pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum
Length = 285
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 51/127 (40%), Gaps = 41/127 (32%)
Query: 317 EGRHMRVENKNF--------YFDIGQNN--------RGI-----YMRVSEVSQTIPRGGP 355
EGRHM++E N Y+ G+N RGI M VS I
Sbjct: 18 EGRHMKLEFMNLLSENKKENYYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICI--S 75
Query: 356 RSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMR-------VENKNFYFDI 408
R+Q + D++ D ++ FG E GY G++ + + E+KN DI
Sbjct: 76 RTQKSC---------DSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN--VDI 124
Query: 409 GQNNRGI 415
NN GI
Sbjct: 125 LVNNAGI 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,017,018
Number of Sequences: 62578
Number of extensions: 557085
Number of successful extensions: 1088
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 16
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)