Query psy10506
Match_columns 435
No_of_seqs 116 out of 152
Neff 3.6
Searched_HMMs 46136
Date Fri Aug 16 19:52:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10506.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10506hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04845 PurA: PurA ssDNA and 100.0 1.8E-81 3.8E-86 591.1 14.0 214 112-380 1-218 (218)
2 KOG3074|consensus 100.0 1.2E-74 2.5E-79 550.0 18.6 225 108-385 18-244 (263)
3 PF04845 PurA: PurA ssDNA and 100.0 9.1E-61 2E-65 450.9 11.5 195 190-432 2-205 (218)
4 KOG3074|consensus 100.0 3.7E-58 8.1E-63 437.3 15.1 194 187-431 20-225 (263)
5 smart00712 PUR DNA/RNA-binding 99.9 6.1E-22 1.3E-26 156.5 6.9 63 114-176 1-63 (63)
6 smart00712 PUR DNA/RNA-binding 99.8 2.7E-21 5.8E-26 152.8 8.1 61 316-381 2-63 (63)
7 PF11680 DUF3276: Protein of u 97.6 0.00013 2.8E-09 65.5 6.4 69 188-256 8-84 (124)
8 PF11680 DUF3276: Protein of u 96.9 0.0015 3.2E-08 58.7 5.1 66 318-383 14-84 (124)
9 PF13691 Lactamase_B_4: tRNase 23.6 53 0.0012 26.5 1.7 18 319-336 15-33 (63)
10 PF11950 DUF3467: Protein of u 20.7 1.2E+02 0.0025 25.7 3.3 29 149-177 57-85 (92)
No 1
>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution. Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.
Probab=100.00 E-value=1.8e-81 Score=591.13 Aligned_cols=214 Identities=64% Similarity=1.081 Sum_probs=124.0
Q ss_pred hhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCC-
Q psy10506 112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDG- 190 (435)
Q Consensus 112 e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~~lp~~~- 190 (435)
|||||||+||||+||||||||||.|||||||||+|++|+||+|+|+|++|++|||||++|++||++|+|++++.+++++
T Consensus 1 e~eLask~l~iq~KrfYlDVkqN~RGrfiKiaE~~~~g~ksri~lsm~~A~efrd~L~~f~~~ya~l~p~n~~~~~~~~~ 80 (218)
T PF04845_consen 1 EQELASKMLQIQNKRFYLDVKQNRRGRFIKIAEVGAGGRKSRITLSMSAAAEFRDHLGDFIEFYAQLGPSNPENLPDEGR 80 (218)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE-TT--EEEEEEEHHHHHHHHHHHHHHHHHHHCS-S--SS---TT--
T ss_pred CchhhhhheEecceEEEEEecccCcceeEEEeeccCCCCcceEEEechhHHHHHHHHHHHHHHHhccCCCCccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CccceeeeeccceEEEecccCCccceeEEEeeecCC--CCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecccc
Q psy10506 191 -KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRG--GPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVP 267 (435)
Q Consensus 191 -~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rg--g~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p 267 (435)
.|+||+|++++|+||||||||+|||||||+|++++| |+|+||+|||+||.+|+++|.+++++|++++.
T Consensus 81 ~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~~~~~~~~~R~qIaiPa~G~~ef~~al~~lid~~g~~~~--------- 151 (218)
T PF04845_consen 81 SELKSEKINVENRRYYLDLKENSRGRFLRISQTVSRGPRGRRSQIAIPAQGMIEFRDALTDLIDEFGEDDE--------- 151 (218)
T ss_dssp -ECEEEEEEETTEEEEEEEEEETTEEEEEEEEEETTT----EEEEEEEGGGHHHHHHHHHHHHHHH--------------
T ss_pred ceeeehheeeccceEEEEcccccCcceEEEEEeeccCCCCCccEEEEehHHHHHHHHHHHHHHHHhcCccc---------
Confidence 999999999999999999999999999999998877 88999999999998888877777777763210
Q ss_pred cccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeee
Q psy10506 268 HQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVS 347 (435)
Q Consensus 268 ~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~ 347 (435)
....++||++++|++|||+||||+|+|+||+|||||||+
T Consensus 152 -----------------------------------------~~~~~~Lpes~~lrvdnK~FyFD~g~N~rG~fLrISEv~ 190 (218)
T PF04845_consen 152 -----------------------------------------EDEQGELPESKSLRVDNKRFYFDVGSNRRGVFLRISEVK 190 (218)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------------------ccccccCCCCcEEEECCeEEEEECCCCCCeeEEEecccC
Confidence 123567999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEechhhHHHHHHHHHHHHHHh
Q psy10506 348 QTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEF 380 (435)
Q Consensus 348 qt~~rg~~RssItIPaqg~~eFrdaL~~~ide~ 380 (435)
+++|++||||+++|++||++|++|+++|
T Consensus 191 -----~~~Rs~ItIP~~~w~~Fr~~~~~~~e~M 218 (218)
T PF04845_consen 191 -----SNFRSAITIPESAWSRFRDIFNEYAEEM 218 (218)
T ss_dssp ---------------------------------
T ss_pred -----CCCCceeeCCHHHHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999998
No 2
>KOG3074|consensus
Probab=100.00 E-value=1.2e-74 Score=549.98 Aligned_cols=225 Identities=52% Similarity=0.862 Sum_probs=203.6
Q ss_pred ccchhhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCC--C
Q psy10506 108 QQQQEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPD--T 185 (435)
Q Consensus 108 ~~~~e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~--~ 185 (435)
..+++||||||+||||+||||||||||+|||||||||+|++++ |||||||++|+||||+|++|++|||+|+|++++ .
T Consensus 18 ~~~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~~~~-Sri~ls~s~aaef~d~l~~f~~~ya~lg~~~~~~~~ 96 (263)
T KOG3074|consen 18 GGGEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGAGGR-SRIILSLSVAAEFRDILNDFIEHYAQLGPPPPELAA 96 (263)
T ss_pred ccchhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEeccCCc-ceEEEehhhHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 3578999999999999999999999999999999999997755 999999999999999999999999999998864 4
Q ss_pred CCCCCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecc
Q psy10506 186 VPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSL 265 (435)
Q Consensus 186 lp~~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l 265 (435)
.+++..|+||+|+.++|+||||||||+|||||||+|+..+++.++
T Consensus 97 ~~ee~~lkSe~L~~d~RkfY~DLKEN~RGRFLRI~qt~~rg~~~~----------------------------------- 141 (263)
T KOG3074|consen 97 PSEEHELKSEELQRDNRKFYLDLKENQRGRFLRISQTPMRGRQTR----------------------------------- 141 (263)
T ss_pred chhhhhHHHHHHhhcCceEEEEcccccccceEEeeecccCCCCcc-----------------------------------
Confidence 566789999999999999999999999999999999977654211
Q ss_pred cccccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEee
Q psy10506 266 VPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSE 345 (435)
Q Consensus 266 ~p~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISE 345 (435)
.+.++||+|||||+||||||++|+++||.++. -.++|++..|+||||+||||+|+|+||.||||||
T Consensus 142 ------------~Q~~tIalPaqG~aEfrdaLaelle~~G~~~~--gqelpeg~~~tvDnk~F~Fd~G~N~~G~f~riSE 207 (263)
T KOG3074|consen 142 ------------TQVQTIALPAQGIAEFRDALAELLEDFGEGDE--GQELPEGTSITVDNKRFLFDVGKNKRGVFVRISE 207 (263)
T ss_pred ------------ccccceeccchhHHHHHHHHHHHHHHhCCccc--cCCCCCCCeEEEecceeEEecCCCCccceEEEEE
Confidence 12345788899999999999999999998775 4889999999999999999999999999999999
Q ss_pred eecccCCCCCCceEEechhhHHHHHHHHHHHHHHhcccCC
Q psy10506 346 VSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDG 385 (435)
Q Consensus 346 v~qt~~rg~~RssItIPaqg~~eFrdaL~~~ide~~~~d~ 385 (435)
|+ +.+++|++||||.++|.+|+++|++|+++|+...+
T Consensus 208 Vk---~n~~yRnsITvP~k~w~~F~~~f~~y~e~mk~~~e 244 (263)
T KOG3074|consen 208 VK---SNGSYRNSITVPFKAWKRFGEVFGKYSEEMKKISE 244 (263)
T ss_pred ec---CCCCcccceeeehhHhhhhhhHHHHHHHHHHHhhh
Confidence 99 45699999999999999999999999999998754
No 3
>PF04845 PurA: PurA ssDNA and RNA-binding protein; InterPro: IPR006628 The Pur protein family consists of four known members in humans and is strongly conserved throughout evolution. Pur-alpha is a highly conserved, sequence-specific DNA- and RNA-binding protein involved in diverse cellular and viral functions including transcription, replication, and cell growth. Pur-alpha has a modular structure with alternating three basic aromatic class I and two acidic leucine-rich class II repeats in the central region of the protein []. In addition to its involved in basic cellular function, Pur-alpha, has been implicated in the development of blood cells and cells of the central nervous system; it has also been implicated in the inhibition of oncogenic transformation and along with Pur-beta in myelodysplastic syndrome progressing to acute myelogenous leukemia. Pur-alpha can influence viral interaction through functional associations, for example with the Tat protein and TAR RNA of HIV-1, and with large T-antigen and DNA regulatory regions of JC virus. JC virus causes opportunistic infections in the brains of certain HIV-1-infected individuals [].; PDB: 3K44_A.
Probab=100.00 E-value=9.1e-61 Score=450.87 Aligned_cols=195 Identities=45% Similarity=0.837 Sum_probs=116.6
Q ss_pred CCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceecccccc
Q psy10506 190 GKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPHQ 269 (435)
Q Consensus 190 ~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p~q 269 (435)
++||||+|++|+||||||||||.||||+||+|++ ++|+||+|+++++.+++|+++|++|+|+|++ |.|.-
T Consensus 2 ~eLask~l~iq~KrfYlDVkqN~RGrfiKiaE~~-~~g~ksri~lsm~~A~efrd~L~~f~~~ya~---------l~p~n 71 (218)
T PF04845_consen 2 QELASKMLQIQNKRFYLDVKQNRRGRFIKIAEVG-AGGRKSRITLSMSAAAEFRDHLGDFIEFYAQ---------LGPSN 71 (218)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTEEEEEEEEE--TT--EEEEEEEHHHHHHHHHHHHHHHHHHHC---------S-S--
T ss_pred chhhhhheEecceEEEEEecccCcceeEEEeecc-CCCCcceEEEechhHHHHHHHHHHHHHHHhc---------cCCCC
Confidence 6899999999999999999999999999999985 6889999999999999999999999999984 32321
Q ss_pred cccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeeecc
Q psy10506 270 VSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQT 349 (435)
Q Consensus 270 ~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~qt 349 (435)
+.+ ..+++ ...-.+++|.+|+|+||||||||+||+||||||.
T Consensus 72 ~~~--------------------------------~~~~~---~~~lkSe~i~~e~r~yylDLKEN~RGrfLRisq~--- 113 (218)
T PF04845_consen 72 PEN--------------------------------LPDEG---RSELKSEKINVENRRYYLDLKENSRGRFLRISQT--- 113 (218)
T ss_dssp SS-----------------------------------TT------ECEEEEEEETTEEEEEEEEEETTEEEEEEEEE---
T ss_pred ccc--------------------------------ccccc---cceeeehheeeccceEEEEcccccCcceEEEEEe---
Confidence 100 00111 1133567999999999999999999999999954
Q ss_pred cCCC--CCCceEEechhhHHHHHHHHHHHHHHhcccC-CCCCCCCCCCceeEEecceEEEecCCCCceeEEEEeEE----
Q psy10506 350 IPRG--GPRSQIAIPAQGMIEFRDALTDLLEEFGTED-GGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEH---- 422 (435)
Q Consensus 350 ~~rg--~~RssItIPaqg~~eFrdaL~~~ide~~~~d-~g~~~elpe~~~lrv~nK~FyFDvg~N~rG~flrIsEv---- 422 (435)
.+|| +.|++|+|||+||++|++||++++|++++.+ +..+.+||++++|+||||+||||+|+|+||+|||||||
T Consensus 114 ~~~~~~~~R~qIaiPa~G~~ef~~al~~lid~~g~~~~~~~~~~Lpes~~lrvdnK~FyFD~g~N~rG~fLrISEv~~~~ 193 (218)
T PF04845_consen 114 VSRGPRGRRSQIAIPAQGMIEFRDALTDLIDEFGEDDEEDEQGELPESKSLRVDNKRFYFDVGSNRRGVFLRISEVKSNF 193 (218)
T ss_dssp ETTT----EEEEEEEGGGHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred eccCCCCCccEEEEehHHHHHHHHHHHHHHHHhcCcccccccccCCCCcEEEECCeEEEEECCCCCCeeEEEecccCCCC
Confidence 4666 8899999999999999999999999999987 44678999999999999999999999999999999999
Q ss_pred --EEeecccccc
Q psy10506 423 --YYIIPFDSLV 432 (435)
Q Consensus 423 --~~~~~~~~~~ 432 (435)
.||||.++++
T Consensus 194 Rs~ItIP~~~w~ 205 (218)
T PF04845_consen 194 RSAITIPESAWS 205 (218)
T ss_dssp ------------
T ss_pred CceeeCCHHHHH
Confidence 5889987764
No 4
>KOG3074|consensus
Probab=100.00 E-value=3.7e-58 Score=437.26 Aligned_cols=194 Identities=43% Similarity=0.817 Sum_probs=165.9
Q ss_pred CCCCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceeccc
Q psy10506 187 PDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLV 266 (435)
Q Consensus 187 p~~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~ 266 (435)
.++++|+||+|++|+||||||||||+|||||||||+.. + .||+|++|++++++|+++|++|+++|+. |.
T Consensus 20 ~~~~eLask~l~iq~KrfYlDvkqN~rGRflKIaE~g~-~-~~Sri~ls~s~aaef~d~l~~f~~~ya~---------lg 88 (263)
T KOG3074|consen 20 GEDQELASKRLQIQHKRFYLDVKQNPRGRFLKIAEVGA-G-GRSRIILSLSVAAEFRDILNDFIEHYAQ---------LG 88 (263)
T ss_pred chhHHHhhhhhhhhhheEEEEeccCCCcceEEEEEecc-C-CcceEEEehhhHHHHHHHHHHHHHHHHh---------cC
Confidence 35679999999999999999999999999999999853 3 4599999999999999999999999984 22
Q ss_pred ccccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeee
Q psy10506 267 PHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEV 346 (435)
Q Consensus 267 p~q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv 346 (435)
|. +++.+.|+ +++.+ .++.|..|||+||||||||+|||||||+
T Consensus 89 ~~-----------~~~~~~~~-------------------ee~~l-----kSe~L~~d~RkfY~DLKEN~RGRFLRI~-- 131 (263)
T KOG3074|consen 89 PP-----------PPELAAPS-------------------EEHEL-----KSEELQRDNRKFYLDLKENQRGRFLRIS-- 131 (263)
T ss_pred CC-----------Ccccccch-------------------hhhhH-----HHHHHhhcCceEEEEcccccccceEEee--
Confidence 21 01111111 22222 3457899999999999999999999998
Q ss_pred ecccCCCC-CCce---EEechhhHHHHHHHHHHHHHHhcccCCCCCCCCCCCceeEEecceEEEecCCCCceeEEEEeEE
Q psy10506 347 SQTIPRGG-PRSQ---IAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEH 422 (435)
Q Consensus 347 ~qt~~rg~-~Rss---ItIPaqg~~eFrdaL~~~ide~~~~d~g~~~elpe~~~lrv~nK~FyFDvg~N~rG~flrIsEv 422 (435)
||.+|++ .|++ |+||++||++|||+|.+|++++++.+++ ++||++++++||||+||||+|+|+||+|||||||
T Consensus 132 -qt~~rg~~~~~Q~~tIalPaqG~aEfrdaLaelle~~G~~~~g--qelpeg~~~tvDnk~F~Fd~G~N~~G~f~riSEV 208 (263)
T KOG3074|consen 132 -QTPMRGRQTRTQVQTIALPAQGIAEFRDALAELLEDFGEGDEG--QELPEGTSITVDNKRFLFDVGKNKRGVFVRISEV 208 (263)
T ss_pred -ecccCCCCccccccceeccchhHHHHHHHHHHHHHHhCCcccc--CCCCCCCeEEEecceeEEecCCCCccceEEEEEe
Confidence 7778887 7888 9999999999999999999999998873 8999999999999999999999999999999999
Q ss_pred E--------Eeeccccc
Q psy10506 423 Y--------YIIPFDSL 431 (435)
Q Consensus 423 ~--------~~~~~~~~ 431 (435)
+ ||+||+-+
T Consensus 209 k~n~~yRnsITvP~k~w 225 (263)
T KOG3074|consen 209 KSNGSYRNSITVPFKAW 225 (263)
T ss_pred cCCCCcccceeeehhHh
Confidence 5 58888765
No 5
>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
Probab=99.86 E-value=6.1e-22 Score=156.48 Aligned_cols=63 Identities=46% Similarity=0.789 Sum_probs=60.3
Q ss_pred hhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhh
Q psy10506 114 ELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYA 176 (435)
Q Consensus 114 eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya 176 (435)
||+||+|++|+|+||||||+|+|||||||||++.++.||+|+||++++.+|++.|.+++++|.
T Consensus 1 el~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~~~~~r~~I~lp~~~~~~F~~~l~~~~~~~~ 63 (63)
T smart00712 1 ELASKKLTVENKRFYFDVKENRRGRFLRISEVKNNGGRSSITVPEQGAAEFRDALNKLIEKYG 63 (63)
T ss_pred CCcccEEEeCCcEEEEEecccCCccEEEEEEecCCCCceEEEEEHHHHHHHHHHHHHHHHhhC
Confidence 689999999999999999999999999999999777799999999999999999999999983
No 6
>smart00712 PUR DNA/RNA-binding repeats in PUR-alpha/beta/gamma and in hypothetical proteins from spirochetes and the Bacteroides-Cytophaga-Flexibacter bacteria.
Probab=99.85 E-value=2.7e-21 Score=152.83 Aligned_cols=61 Identities=49% Similarity=0.910 Sum_probs=57.1
Q ss_pred CCcceeEEecceEEEEcCCCCccceEEEeeeecccCCCCC-CceEEechhhHHHHHHHHHHHHHHhc
Q psy10506 316 PEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGP-RSQIAIPAQGMIEFRDALTDLLEEFG 381 (435)
Q Consensus 316 p~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~qt~~rg~~-RssItIPaqg~~eFrdaL~~~ide~~ 381 (435)
+.|++|+++||+||||||+|+||+||||||++ ++. |++|+||+++|++|+++|++++|.|+
T Consensus 2 l~Sk~l~~~~k~fyfDvk~N~rG~fLrIsE~~-----~~~~r~~I~lp~~~~~~F~~~l~~~~~~~~ 63 (63)
T smart00712 2 LASKKLTVENKRFYFDVKENRRGRFLRISEVK-----NNGGRSSITVPEQGAAEFRDALNKLIEKYG 63 (63)
T ss_pred CcccEEEeCCcEEEEEecccCCccEEEEEEec-----CCCCceEEEEEHHHHHHHHHHHHHHHHhhC
Confidence 46789999999999999999999999999999 455 99999999999999999999999885
No 7
>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function. ; PDB: 3NM7_C 3N8B_A.
Probab=97.62 E-value=0.00013 Score=65.46 Aligned_cols=69 Identities=25% Similarity=0.530 Sum_probs=55.3
Q ss_pred CCCCccceeeeeccceEEEecccCCccc-eeEEEeee--cCC-C----CccEEEEecccHHHHHHHHHHHHHhhccC
Q psy10506 188 DDGKLKSEVMVKDNRRYYLDLKENTRGR-FLRVSQTI--PRG-G----PRSQIAIPAQGMIEFRDALTDLLEEFGTE 256 (435)
Q Consensus 188 ~~~~L~Se~i~~e~KrFYlDLKeN~RGR-FLRISE~~--~rg-g----~RS~IiIPa~g~~eFr~~L~~~ie~~~~~ 256 (435)
+.++|.|+.|.++++.||||||+|..|- ||-|+|.- ..+ | .|..|.|-.+-+..|.+.|.++++.+..+
T Consensus 8 ~r~eifSk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~i~~i~~~ 84 (124)
T PF11680_consen 8 DREEIFSKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEAIDFIKKE 84 (124)
T ss_dssp -TTEEEEEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999995 89999963 222 2 58999999999999999999999988643
No 8
>PF11680 DUF3276: Protein of unknown function (DUF3276); InterPro: IPR021694 This bacterial family of proteins has no known function. ; PDB: 3NM7_C 3N8B_A.
Probab=96.90 E-value=0.0015 Score=58.73 Aligned_cols=66 Identities=17% Similarity=0.473 Sum_probs=51.6
Q ss_pred cceeEEecceEEEEcCCCCcc-ceEEEeeeecccCCCC----CCceEEechhhHHHHHHHHHHHHHHhccc
Q psy10506 318 GRHMRVENKNFYFDIGQNNRG-IYMRVSEVSQTIPRGG----PRSQIAIPAQGMIEFRDALTDLLEEFGTE 383 (435)
Q Consensus 318 s~~IrvdnKrFyFDLgeN~RG-rFLRISEv~qt~~rg~----~RssItIPaqg~~eFrdaL~~~ide~~~~ 383 (435)
|+.+++++++||||+++|..| -||-|+|-+-...-.+ .|..|.|=..=+.+|.++|.+.++-....
T Consensus 14 Sk~v~agkRtYFFDVK~~r~gD~yLtItESKk~~~~~g~~~f~khkI~LYkEDf~~F~~~L~e~i~~i~~~ 84 (124)
T PF11680_consen 14 SKVVKAGKRTYFFDVKENRKGDYYLTITESKKFTDGDGSFSFEKHKIFLYKEDFEKFLEGLDEAIDFIKKE 84 (124)
T ss_dssp EEE--SSSEEEEEEEEE-TTS-EEEEEEEEEE-TTS-----EEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecCCeeEEEEeecccCCCEEEEEEeecccCCCCcceeeeeeEEEEeHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999998 5899999884332222 58899999999999999999998876654
No 9
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=23.56 E-value=53 Score=26.50 Aligned_cols=18 Identities=11% Similarity=0.456 Sum_probs=15.5
Q ss_pred ceeEEecceEEE-EcCCCC
Q psy10506 319 RHMRVENKNFYF-DIGQNN 336 (435)
Q Consensus 319 ~~IrvdnKrFyF-DLgeN~ 336 (435)
=.+..|++||.| +++|+-
T Consensus 15 l~l~~d~~rYlFGn~gEGt 33 (63)
T PF13691_consen 15 LLLFFDSRRYLFGNCGEGT 33 (63)
T ss_pred EEEEeCCceEEeccCCcHH
Confidence 367999999999 999974
No 10
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=20.74 E-value=1.2e+02 Score=25.74 Aligned_cols=29 Identities=14% Similarity=0.150 Sum_probs=24.8
Q ss_pred CCccEEEEechhHHHHHHHhhhhhhhhhh
Q psy10506 149 GRRSQIFLALSVAEQFRGHLSAFSDYYAS 177 (435)
Q Consensus 149 g~rS~Iilp~s~a~~frd~L~~f~e~Ya~ 177 (435)
.-.|+|++|...|..+...|.+-+.-|..
T Consensus 57 ~v~sRVimsP~~AKrL~~aL~~~l~~YE~ 85 (92)
T PF11950_consen 57 KVSSRVIMSPQHAKRLLKALQQNLQKYEQ 85 (92)
T ss_pred ceEEEEEeCHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999888888853
Done!