Query psy10506
Match_columns 435
No_of_seqs 116 out of 152
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 19:52:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10506.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10506hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k44_A Purine-rich binding pro 100.0 1.1E-52 3.8E-57 376.0 16.3 145 111-255 1-145 (146)
2 3k44_A Purine-rich binding pro 100.0 5.5E-48 1.9E-52 345.7 14.8 144 189-382 2-145 (146)
3 3n8b_A Uncharacterized protein 98.3 1.5E-06 5.1E-11 73.6 6.6 68 190-257 3-75 (98)
4 3n8b_A Uncharacterized protein 97.9 6.6E-06 2.3E-10 69.7 4.3 66 318-384 8-75 (98)
5 3nm7_A Uncharacterized protein 97.1 0.0012 4.1E-08 58.1 7.2 70 188-257 8-82 (127)
6 3nm7_A Uncharacterized protein 96.2 0.0036 1.2E-07 55.1 4.0 64 319-383 16-81 (127)
7 2x5h_A ORF 131; viral protein; 31.1 49 0.0017 27.6 4.1 66 188-254 18-85 (97)
8 1whl_A Cylindromatosis tumor s 13.4 46 0.0016 27.4 0.3 26 398-425 63-88 (95)
9 3ttq_A Dextransucrase; (beta/a 11.7 4.9E+02 0.017 30.1 7.9 29 111-141 190-219 (1108)
10 1ixd_A Cylindromatosis tumour- 11.7 68 0.0023 27.0 0.9 37 392-430 58-95 (104)
No 1
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-52 Score=375.99 Aligned_cols=145 Identities=87% Similarity=1.314 Sum_probs=140.5
Q ss_pred hhhhhcccceeecceEEEEEeccCcceeeEEEeeecCCCCccEEEEechhHHHHHHHhhhhhhhhhhcCCCCCCCCCCCC
Q psy10506 111 QEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAFSDYYASLGPPNPDTVPDDG 190 (435)
Q Consensus 111 ~e~eLaSk~Lqiq~KrFYlDVKeN~RGRFlKIaE~~~~g~rS~Iilp~s~a~~frd~L~~f~e~Ya~lgp~~~~~lp~~~ 190 (435)
+||||+||+|++|+|+||||||||.|||||||||++++|+||+|+||++++.||||+|++|+|+|+++++++++.+|+++
T Consensus 1 ~~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~~~~ 80 (146)
T 3k44_A 1 VEQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDG 80 (146)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEECTTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCCTTC
T ss_pred CcccccceeEEEeceEEEEEecccCCeEEEEEEEecCCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCCccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhcc
Q psy10506 191 KLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGT 255 (435)
Q Consensus 191 ~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~ 255 (435)
.|+|++|.+++|+||||||+|+|||||||||+.++|+.|++|+||++||.+||++|++++++|++
T Consensus 81 ~l~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~ 145 (146)
T 3k44_A 81 KLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGA 145 (146)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred cccchheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999998778899999999999999999999999999973
No 2
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=5.5e-48 Score=345.67 Aligned_cols=144 Identities=45% Similarity=0.810 Sum_probs=122.4
Q ss_pred CCCccceeeeeccceEEEecccCCccceeEEEeeecCCCCccEEEEecccHHHHHHHHHHHHHhhccCCCCcceeccccc
Q psy10506 189 DGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKVLSLVPH 268 (435)
Q Consensus 189 ~~~L~Se~i~~e~KrFYlDLKeN~RGRFLRISE~~~rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~~~~~~L~l~p~ 268 (435)
+++|+||+|++|+||||||||||+|||||||||++ ++|+||+|+||++||.+|+++|++|+|+|+..+ |.
T Consensus 2 ~~eL~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~-~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g---------~~ 71 (146)
T 3k44_A 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIG-ADGRRSQIYLALSTAAEFRDHLSSFSDYYASLG---------PP 71 (146)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTEEEEEEEEEC-TTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSC---------SC
T ss_pred cccccceeEEEeceEEEEEecccCCeEEEEEEEec-CCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcC---------CC
Confidence 57899999999999999999999999999999984 678999999999999999999999999997421 11
Q ss_pred ccccccCCCCCCCccccCcchhHHHHHHHhHHHhhhCCCCCCCCCCCCCcceeEEecceEEEEcCCCCccceEEEeeeec
Q psy10506 269 QVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQ 348 (435)
Q Consensus 269 q~~q~~~~~g~~~q~a~pa~g~~efrdaL~dl~e~~g~~d~~~~~~lp~s~~IrvdnKrFyFDLgeN~RGrFLRISEv~q 348 (435)
.+..+|. ++ .| .+++|++|||+||||||+|+||+||||||+.
T Consensus 72 ------------~~~~~~~--------------------~~----~l-~s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~- 113 (146)
T 3k44_A 72 ------------NTDNLPE--------------------DG----KL-KSEMMIKDYRRYYLDLKENARGRFLRVSQTI- 113 (146)
T ss_dssp ------------CSSCCCT--------------------TC----EE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEE-
T ss_pred ------------ccccCCc--------------------cc----cc-cchheeccCceEEEEecccCcceEEEEEEee-
Confidence 1101111 11 11 2468999999999999999999999999885
Q ss_pred ccCCCCCCceEEechhhHHHHHHHHHHHHHHhcc
Q psy10506 349 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGT 382 (435)
Q Consensus 349 t~~rg~~RssItIPaqg~~eFrdaL~~~ide~~~ 382 (435)
.||++|++||||++||++|||+|++|+|+|++
T Consensus 114 --~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~ 145 (146)
T 3k44_A 114 --TRGGPRSQIALPAQGMIEFRDALTDLLEEFGA 145 (146)
T ss_dssp --SSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred --ccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence 45889999999999999999999999999975
No 3
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.25 E-value=1.5e-06 Score=73.56 Aligned_cols=68 Identities=29% Similarity=0.553 Sum_probs=57.4
Q ss_pred CCccceeee-eccceEEEecccCCccc-eeEEEeee--cCCC-CccEEEEecccHHHHHHHHHHHHHhhccCC
Q psy10506 190 GKLKSEVMV-KDNRRYYLDLKENTRGR-FLRVSQTI--PRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED 257 (435)
Q Consensus 190 ~~L~Se~i~-~e~KrFYlDLKeN~RGR-FLRISE~~--~rgg-~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~ 257 (435)
++|.|+.+. ..++.||||||+|..|. ||.|+|.. ..|+ .|..|.|+.+-+..|.+.|.++++.+..+.
T Consensus 3 gEvfS~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~~ 75 (98)
T 3n8b_A 3 GEVYSEKMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQKV 75 (98)
T ss_dssp TEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTC
T ss_pred chhhHHHHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence 678897665 45899999999999999 99999962 2344 599999999999999999999999887643
No 4
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=97.93 E-value=6.6e-06 Score=69.67 Aligned_cols=66 Identities=15% Similarity=0.375 Sum_probs=56.4
Q ss_pred cceeEEecceEEEEcCCCCccc-eEEEeeeecccCCCC-CCceEEechhhHHHHHHHHHHHHHHhcccC
Q psy10506 318 GRHMRVENKNFYFDIGQNNRGI-YMRVSEVSQTIPRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED 384 (435)
Q Consensus 318 s~~IrvdnKrFyFDLgeN~RGr-FLRISEv~qt~~rg~-~RssItIPaqg~~eFrdaL~~~ide~~~~d 384 (435)
.+++++..++||||+++|..|. ||-|+|-+-... |. .|..|.|+..-+..|.++|.+.++-.....
T Consensus 8 ~kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~-G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~~ 75 (98)
T 3n8b_A 8 EKMFTESERTYFMNVKENRKGDYFLNIVESKRSPS-GDFERHSIFVYEENMNEFESNLLKAIAVIKQKV 75 (98)
T ss_dssp EEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTT-SCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCeEEEEEeecccCCCeEEEEEeecccCC-CCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566778999999999999999 999999974322 55 589999999999999999999999887653
No 5
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=97.07 E-value=0.0012 Score=58.07 Aligned_cols=70 Identities=26% Similarity=0.529 Sum_probs=57.2
Q ss_pred CCCCccceeee-eccceEEEecccCCccc-eeEEEeee--cCCC-CccEEEEecccHHHHHHHHHHHHHhhccCC
Q psy10506 188 DDGKLKSEVMV-KDNRRYYLDLKENTRGR-FLRVSQTI--PRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTED 257 (435)
Q Consensus 188 ~~~~L~Se~i~-~e~KrFYlDLKeN~RGR-FLRISE~~--~rgg-~RS~IiIPa~g~~eFr~~L~~~ie~~~~~~ 257 (435)
+.++|.|+.+. ...+.||||||+|..|- ||-|+|.- ..|+ .|..|.|-.+-+..|.+.|.++++.+..+-
T Consensus 8 ~ReEIfSkkv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~~ 82 (127)
T 3nm7_A 8 ERGEVYSEKLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQKV 82 (127)
T ss_dssp CTTEEEEEEECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHS
T ss_pred chhhhhHHHHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHhc
Confidence 45789997775 56899999999999995 89999963 2233 499999999999999999999988887543
No 6
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=96.17 E-value=0.0036 Score=55.07 Aligned_cols=64 Identities=16% Similarity=0.438 Sum_probs=53.4
Q ss_pred ceeEEecceEEEEcCCCCcc-ceEEEeeeecccCCCC-CCceEEechhhHHHHHHHHHHHHHHhccc
Q psy10506 319 RHMRVENKNFYFDIGQNNRG-IYMRVSEVSQTIPRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTE 383 (435)
Q Consensus 319 ~~IrvdnKrFyFDLgeN~RG-rFLRISEv~qt~~rg~-~RssItIPaqg~~eFrdaL~~~ide~~~~ 383 (435)
+++.+..++||||+++|..| -||-|+|-+-... |. .|..|.|=..-+..|.++|.+.++-....
T Consensus 16 kv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~-G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~~ 81 (127)
T 3nm7_A 16 KLFTESERTYFFNVKENRKGDYFLNIVESKRSPS-GDFERHSIFVYEENINEFESNLLKAIAVIKQK 81 (127)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTT-SCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCeeEEEEeecccCCCeEEEEEeecccCC-CCeeEEEEEEEHHHHHHHHHHHHHHHHHHHHh
Confidence 45567899999999999997 5899999884333 44 58899999999999999999998877655
No 7
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=31.11 E-value=49 Score=27.65 Aligned_cols=66 Identities=24% Similarity=0.399 Sum_probs=51.5
Q ss_pred CCCCccceeeeecc-ceEEEecccCCccceeEEEeeec-CCCCccEEEEecccHHHHHHHHHHHHHhhc
Q psy10506 188 DDGKLKSEVMVKDN-RRYYLDLKENTRGRFLRVSQTIP-RGGPRSQIAIPAQGMIEFRDALTDLLEEFG 254 (435)
Q Consensus 188 ~~~~L~Se~i~~e~-KrFYlDLKeN~RGRFLRISE~~~-rgg~RS~IiIPa~g~~eFr~~L~~~ie~~~ 254 (435)
+.+..+|+.|.+-+ +|.-+-++--+-|--+|+|.++- ++.-|.||-|.++-+... -.+++|+|+|.
T Consensus 18 ~~nk~aSkI~kIKg~~rivlQiNAvP~g~~ir~SMTiHs~nNfkKQIGiTa~DA~dL-~lIa~FLeKYS 85 (97)
T 2x5h_A 18 EQNKIASRIMKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDL-KLIAEFLEKYS 85 (97)
T ss_dssp HHTSCEEEECCCTTCSSEEEEEEEEEETTEEEEEEEEEETTEEEEEEEECGGGHHHH-HHHHHHHHHTH
T ss_pred HcCChHHHHheecCcceEEEEeeccCCCCeeEEEEEEecccchhhhcCCCcccHHHH-HHHHHHHHHHH
Confidence 34567888888754 78889999999999999999863 333489999999977554 45678888875
No 8
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=13.43 E-value=46 Score=27.41 Aligned_cols=26 Identities=15% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEecceEEEecCCCCceeEEEEeEEEEe
Q psy10506 398 RVENKNFYFDIGQNNRGIYMRVSEHYYI 425 (435)
Q Consensus 398 rv~nK~FyFDvg~N~rG~flrIsEv~~~ 425 (435)
+|++++ ||.+ ...+|+|+|.+-|...
T Consensus 63 sv~G~r-YF~C-~~~~G~Fv~~~~v~~~ 88 (95)
T 1whl_A 63 VYQGKQ-LFQC-DEDCGVFVALDKLELI 88 (95)
T ss_dssp EETTEE-CCCC-CTTTEEEECGGGEEEC
T ss_pred EECCEE-Eeec-CCCeEEEEcHHHeEEc
Confidence 566666 6688 6779999998877654
No 9
>3ttq_A Dextransucrase; (beta/alpha)8 barrel, transferase; HET: PG4; 1.90A {Leuconostoc mesenteroides} PDB: 3tto_A*
Probab=11.69 E-value=4.9e+02 Score=30.12 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=17.3
Q ss_pred hhhhhccc-ceeecceEEEEEeccCcceeeEE
Q psy10506 111 QEQELATK-MLQIQSKRFYLDVKQNRRGRFIK 141 (435)
Q Consensus 111 ~e~eLaSk-~Lqiq~KrFYlDVKeN~RGRFlK 141 (435)
++..+++- .+.|+.|.||||- |-+|.|.=
T Consensus 190 sdG~M~tG~~v~IdGkwYYFDs--dG~g~y~f 219 (1108)
T 3ttq_A 190 ATGNQIKNQQVIVDGKTYYFDD--KGNGEYLF 219 (1108)
T ss_dssp TTCCBCCSEEEEETTEEEEECT--TSCEEEEE
T ss_pred CCCcEEeCceEEECCEEEEEcC--CCCcceee
Confidence 45566553 5677777777763 34555543
No 10
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=11.69 E-value=68 Score=27.01 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=25.1
Q ss_pred CCCcee-EEecceEEEecCCCCceeEEEEeEEEEeecccc
Q psy10506 392 PEGRHM-RVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDS 430 (435)
Q Consensus 392 pe~~~l-rv~nK~FyFDvg~N~rG~flrIsEv~~~~~~~~ 430 (435)
|.+++= .|++++ ||.+. ..+|+|+|.+.|...-=|.+
T Consensus 58 p~GKnDGsv~G~r-YF~C~-p~~G~FVr~~~v~~~~rf~~ 95 (104)
T 1ixd_A 58 CAGCTDGTFRGTR-YFTCA-LKKALFVKLKSCRPDSRFAS 95 (104)
T ss_dssp CTTCBSSEETTEE-CSCCC-TTCBEEEEGGGEEECCTTCC
T ss_pred CCCCCCCEECCEE-eeecC-CCcEEEEcHHHceecccccc
Confidence 444433 566666 56885 67999999998876554544
Done!