Query psy10506
Match_columns 435
No_of_seqs 116 out of 152
Neff 3.6
Searched_HMMs 13730
Date Fri Aug 16 19:53:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10506.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10506hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j8ga1 b.109.1.1 (A:191-339) 34.7 57 0.0041 25.6 7.4 51 74-130 34-85 (149)
2 d1ixda_ b.34.10.1 (A:) Cylindr 26.4 8.6 0.00063 30.6 0.7 32 398-431 65-96 (104)
3 d2j8ga1 b.109.1.1 (A:191-339) 18.1 1.1E+02 0.0082 23.7 6.1 30 112-141 87-118 (149)
4 d1whka_ b.34.10.1 (A:) Restin- 15.8 11 0.00083 29.3 -0.7 23 323-347 59-81 (91)
5 d2okfa1 c.52.1.32 (A:4-139) Fd 14.0 51 0.0037 27.3 2.9 49 320-378 25-78 (136)
6 d1wi9a_ a.4.5.47 (A:) Hypothet 12.7 27 0.002 26.2 0.7 13 211-223 56-68 (72)
7 d2jmfa1 b.72.1.1 (A:521-553) U 11.5 49 0.0036 21.0 1.6 20 389-408 1-22 (33)
8 d1jmqa_ b.72.1.1 (A:) Yap65 ww 8.7 70 0.0051 21.6 1.7 22 388-409 6-29 (46)
9 d1pina1 b.72.1.1 (A:6-39) Mito 8.7 1.2E+02 0.009 18.8 2.8 22 390-411 1-25 (34)
10 d2e3ha1 b.34.10.1 (A:212-282) 8.2 42 0.003 24.6 0.3 24 398-423 45-68 (71)
No 1
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=34.69 E-value=57 Score=25.63 Aligned_cols=51 Identities=22% Similarity=0.334 Sum_probs=31.5
Q ss_pred hheeeeeEEEEcccC-cccceeEeccccceEeeecccchhhhhcccceeecceEEEEE
Q psy10506 74 LQIQSKRFYLDVKQN-RRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLD 130 (435)
Q Consensus 74 ~~~~~k~f~~d~k~n-~~gr~~ki~~~p~~~~l~~~~~~e~eLaSk~Lqiq~KrFYlD 130 (435)
.+|..+.||||-.-+ -...++++.+. .|+-.++..+++..+++..|.||||
T Consensus 34 ~~~~g~~Yyfd~~G~~~~~~~~~~~g~------~Yy~~~~G~~~~g~~~~~g~~Yyf~ 85 (149)
T d2j8ga1 34 EKIGGVWYYFDSKGYCLTSEWLKDNEK------WYYLKDNGAMATGWVLVGSEWYYMD 85 (149)
T ss_dssp EEETTEEEEECTTSCBCCSEEEEETTE------EEEECTTSCBCCEEEEETTEEEEEC
T ss_pred EEECCEEEEEccccCcceeeEEEcCCc------EEEEccccccccceeeeccceEEEC
Confidence 355678899986543 22233333321 1334556677788888888888888
No 2
>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.43 E-value=8.6 Score=30.60 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=24.0
Q ss_pred EEecceEEEecCCCCceeEEEEeEEEEeeccccc
Q psy10506 398 RVENKNFYFDIGQNNRGIYMRVSEHYYIIPFDSL 431 (435)
Q Consensus 398 rv~nK~FyFDvg~N~rG~flrIsEv~~~~~~~~~ 431 (435)
++++++ ||++. -++|+|+|.+.++..--|.++
T Consensus 65 t~~G~r-YF~C~-~~~G~Fv~~~~~~~~~~f~~~ 96 (104)
T d1ixda_ 65 TFRGTR-YFTCA-LKKALFVKLKSCRPDSRFASL 96 (104)
T ss_dssp EETTEE-CSCCC-TTCBEEEEGGGEEECCTTCCC
T ss_pred EECCEE-EEecC-CCcEEEechHHCcccccccCC
Confidence 567776 77997 568999999999865445543
No 3
>d2j8ga1 b.109.1.1 (A:191-339) C-terminal domain of endolysin {Bacteriophage cp-1 [TaxId: 10747]}
Probab=18.08 E-value=1.1e+02 Score=23.73 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=15.3
Q ss_pred hhhhcccceeecceEEEEEe--ccCcceeeEE
Q psy10506 112 EQELATKMLQIQSKRFYLDV--KQNRRGRFIK 141 (435)
Q Consensus 112 e~eLaSk~Lqiq~KrFYlDV--KeN~RGRFlK 141 (435)
+..+++--+.++.+.+|+|- ..-..|.+++
T Consensus 87 ~G~~~~G~~~~~g~~yYf~~~~G~~~~~~~~~ 118 (149)
T d2j8ga1 87 SGAMVTGWVKYKNNWYYMTNERGNMVSNEFIK 118 (149)
T ss_dssp TSCBCCEEEEETTEEEEEECGGGCCEEEEEEE
T ss_pred CCcccEEEEEeCCcEEEEECCCcCEEeeEEEE
Confidence 34455555566666666653 2334444444
No 4
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.76 E-value=11 Score=29.26 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=17.7
Q ss_pred EecceEEEEcCCCCccceEEEeeee
Q psy10506 323 VENKNFYFDIGQNNRGIYMRVSEVS 347 (435)
Q Consensus 323 vdnKrFyFDLgeN~RGrFLRISEv~ 347 (435)
++.++ ||+++ -++|.|+|.+.|+
T Consensus 59 v~G~~-YF~C~-~~~G~Fv~~~~v~ 81 (91)
T d1whka_ 59 VGDKR-YFTCK-PNYGVLVRPSRVT 81 (91)
T ss_dssp ETTEE-CCCCS-TTCCCEECGGGEE
T ss_pred ECCEE-EeecC-CCceEEeCHHHeE
Confidence 44444 68998 5799999998776
No 5
>d2okfa1 c.52.1.32 (A:4-139) FdxN element excision controlling factor protein {Anabaena variabilis [TaxId: 1172]}
Probab=14.01 E-value=51 Score=27.30 Aligned_cols=49 Identities=20% Similarity=0.293 Sum_probs=25.3
Q ss_pred eeEEecceEEEEcCCC-----CccceEEEeeeecccCCCCCCceEEechhhHHHHHHHHHHHHH
Q psy10506 320 HMRVENKNFYFDIGQN-----NRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLE 378 (435)
Q Consensus 320 ~IrvdnKrFyFDLgeN-----~RGrFLRISEv~qt~~rg~~RssItIPaqg~~eFrdaL~~~id 378 (435)
.|+++....|.|||-+ .|+.===.-|++. .+- ..+-+.+|+.||++|+-
T Consensus 25 ~i~~~~~~~~~DLgAe~~~aAer~~~kIaVEIKs---------F~~-~~S~i~df~~AlGQf~~ 78 (136)
T d2okfa1 25 TISVGGVNLSIDLAAQKLIAAERQGQKIAVEVKS---------FLK-QSSAISEFHTALGQFIN 78 (136)
T ss_dssp CCEETTEEC-------CCEEEEETTEEEEEEECC---------CCT-TSCHHHHHHHHHHHHHH
T ss_pred EEEECcEEEEeehhhHHHHHhhccCceEEEEEeC---------CCC-CcchhHHHHHHHHHHHH
Confidence 5899999999999998 2322211223331 000 13469999999999875
No 6
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.72 E-value=27 Score=26.24 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=11.0
Q ss_pred CCccceeEEEeee
Q psy10506 211 NTRGRFLRVSQTI 223 (435)
Q Consensus 211 N~RGRFLRISE~~ 223 (435)
-.||+|+-||+..
T Consensus 56 DDRGKfIyIS~s~ 68 (72)
T d1wi9a_ 56 DDRGKFIYITPSG 68 (72)
T ss_dssp CTTCCEEECCCSS
T ss_pred cCCCCEEEEcCCC
Confidence 4699999999964
No 7
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.49 E-value=49 Score=21.01 Aligned_cols=20 Identities=30% Similarity=0.694 Sum_probs=13.9
Q ss_pred CCCCCCcee--EEecceEEEec
Q psy10506 389 GELPEGRHM--RVENKNFYFDI 408 (435)
Q Consensus 389 ~elpe~~~l--rv~nK~FyFDv 408 (435)
++||.|=+. ..+++.||+|-
T Consensus 1 GpLP~GWe~~~d~~G~~Yyinh 22 (33)
T d2jmfa1 1 GPLPPGWEIRYTAAGERFFVDH 22 (33)
T ss_dssp SCCCTTEEEEECTTSCEEEEET
T ss_pred CccCCCeeEEECCCCCEEEEEC
Confidence 468888554 44677899885
No 8
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.74 E-value=70 Score=21.55 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=15.5
Q ss_pred CCCCCCCce--eEEecceEEEecC
Q psy10506 388 KGELPEGRH--MRVENKNFYFDIG 409 (435)
Q Consensus 388 ~~elpe~~~--lrv~nK~FyFDvg 409 (435)
..+||.|=+ ...+++.||+|.-
T Consensus 6 ~~~LP~GWe~~~d~~G~~Yyinh~ 29 (46)
T d1jmqa_ 6 DVPLPAGWEMAKTSSGQRYFKNHI 29 (46)
T ss_dssp SCCCCTTBCCBCCSSCCCBEEETT
T ss_pred cCCCCCCceEEECCCCCEEEEECC
Confidence 467998843 3456788999864
No 9
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.66 E-value=1.2e+02 Score=18.79 Aligned_cols=22 Identities=32% Similarity=0.650 Sum_probs=15.9
Q ss_pred CCCCCceeEEe---cceEEEecCCC
Q psy10506 390 ELPEGRHMRVE---NKNFYFDIGQN 411 (435)
Q Consensus 390 elpe~~~lrv~---nK~FyFDvg~N 411 (435)
+||+|=+.++| ++.||+|.-.+
T Consensus 1 ~LP~GW~~~~d~~~G~~YY~n~~T~ 25 (34)
T d1pina1 1 KLPPGWEKRMSRSSGRVYYFNHITN 25 (34)
T ss_dssp CCCTTEEEEECTTSCCEEEEETTTC
T ss_pred CcCCCcEEEECCCCCCEEEEECCCC
Confidence 48888777776 46799987543
No 10
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.20 E-value=42 Score=24.56 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEecceEEEecCCCCceeEEEEeEEE
Q psy10506 398 RVENKNFYFDIGQNNRGIYMRVSEHY 423 (435)
Q Consensus 398 rv~nK~FyFDvg~N~rG~flrIsEv~ 423 (435)
++++++ ||++. .++|+|++.+-|+
T Consensus 45 ~~~G~~-YF~c~-~~~G~Fv~~~kv~ 68 (71)
T d2e3ha1 45 AVAGTR-YFQCQ-PKYGLFAPVHKVT 68 (71)
T ss_dssp EETTEE-SCCCC-TTCEEEEEGGGEE
T ss_pred EECCEE-EEecC-CCCEEEeCHHHcE
Confidence 566666 67887 5699999988765
Done!