RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10506
(435 letters)
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
repeat, PUR domain, whirly fold, DNA binding protein,
RNA binding protein; 2.10A {Drosophila melanogaster}
Length = 146
Score = 207 bits (527), Expect = 4e-66
Identities = 126/145 (86%), Positives = 135/145 (93%)
Query: 112 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEVGADGRRSQIFLALSVAEQFRGHLSAF 171
EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE+GADGRRSQI+LALS A +FR HLS+F
Sbjct: 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAEIGADGRRSQIYLALSTAAEFRDHLSSF 61
Query: 172 SDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQ 231
SDYYASLGPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLRVSQTI RGGPRSQ
Sbjct: 62 SDYYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQ 121
Query: 232 IAIPAQGMIEFRDALTDLLEEFGTE 256
IA+PAQGMIEFRDALTDLLEEFG
Sbjct: 122 IALPAQGMIEFRDALTDLLEEFGAN 146
Score = 122 bits (307), Expect = 1e-33
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 50/195 (25%)
Query: 189 DGKLKSEVMVKDNRRYYLDLKENTRGRFLRVSQTIPRGGPRSQIAIPAQGMIEFRDALTD 248
+ +L ++++ ++R+YLD+K+N RGRF++V++ I G RSQI + EFRD L+
Sbjct: 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIKVAE-IGADGRRSQIYLALSTAAEFRDHLSS 60
Query: 249 LLEEFGTEDGGYKVLSLVPHQVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTED 308
+ + GP + +P G ++
Sbjct: 61 FSDYYA---------------------SLGPPNTDNLPEDGKLKSEM------------- 86
Query: 309 GGYKGELPEGRHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIE 368
M + + +Y D+ +N RG ++RVS+ TI RGGPRSQIA+PAQGMIE
Sbjct: 87 ------------MIKDYRRYYLDLKENARGRFLRVSQ---TITRGGPRSQIALPAQGMIE 131
Query: 369 FRDALTDLLEEFGTE 383
FRDALTDLLEEFG
Sbjct: 132 FRDALTDLLEEFGAN 146
Score = 87.4 bits (216), Expect = 8e-21
Identities = 32/108 (29%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 319 RHMRVENKNFYFDIGQNNRGIYMRVSEVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLE 378
+ +++++K FY D+ QN RG +++V+E+ G RSQI + EFRD L+ +
Sbjct: 8 KMLQIQSKRFYLDVKQNRRGRFIKVAEIG----ADGRRSQIYLALSTAAEFRDHLSSFSD 63
Query: 379 EFGTEDGGYKGELPE-----GRHMRVENKNFYFDIGQNNRGIYMRVSE 421
+ + LPE M + + +Y D+ +N RG ++RVS+
Sbjct: 64 YYASLGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQ 111
Score = 75.5 bits (185), Expect = 1e-16
Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 16 DGKLKSEVMVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQDKQGQQQQEQELATKMLQ 75
+ +L ++++ ++R+YLD+K+N RGRF++ + E G++ Q + +
Sbjct: 2 EQELATKMLQIQSKRFYLDVKQNRRGRFIK--------VAEIGADGRRSQ---IYLALST 50
Query: 76 IQSKRFYLDVKQNRRGRFIKVNNIPIAICLNCQQQQEQELATKMLQIQSKRFYLDVKQNR 135
R +L + N + ++ +L ++M+ +R+YLD+K+N
Sbjct: 51 AAEFRDHLSSFSDYYASLGPPNTDNLP--------EDGKLKSEMMIKDYRRYYLDLKENA 102
Query: 136 RGRFIKVAE-VGADGRRSQIFLALSVAEQFRGHLSAFSDYYA 176
RGRF++V++ + G RSQI L +FR L+ + +
Sbjct: 103 RGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFG 144
Score = 61.3 bits (148), Expect = 1e-11
Identities = 32/41 (78%), Positives = 36/41 (87%)
Query: 5 YGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENTRGRFLR 45
GPPN D +P+DGKLKSE+M+KD RRYYLDLKEN RGRFLR
Sbjct: 68 LGPPNTDNLPEDGKLKSEMMIKDYRRYYLDLKENARGRFLR 108
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 3e-05
Identities = 29/240 (12%), Positives = 62/240 (25%), Gaps = 85/240 (35%)
Query: 27 DNRRYYLDLKENTRGRFLRTADVN----LLIIY--EQDKQGQQQQEQELATK-MLQIQSK 79
+ R+ + L F + LL + + K +L +++ Q K
Sbjct: 370 EYRKMFDRL-----SVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 80 RF-------YLDVKQNRRG------RFIKVNNIPIAICLN-------------------- 106
YL++K + NIP +
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 107 -CQQQQEQELATKMLQIQSKRFYLDVKQNRRGRFI--KVAEVG-ADGRRSQIFLALSVAE 162
+ + L + +LD RF+ K+ A I L +
Sbjct: 483 NIEHPERMTLFRMV--------FLDF------RFLEQKIRHDSTAWNASGSILNTLQQLK 528
Query: 163 QFRGHLSAFSDYYASLGPPNPDTVPDDGKLKSEVMVKDNRRYYLDLKENT-RGRFLRVSQ 221
++ ++ Y E +V + ++EN ++ + +
Sbjct: 529 FYKPYICDNDPKY-------------------ERLVNAILDFLPKIEENLICSKYTDLLR 569
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 1e-04
Identities = 46/288 (15%), Positives = 84/288 (29%), Gaps = 100/288 (34%)
Query: 182 NPDTVPDDGKLKS----------------EVMVKDNRRYYLDLKENTRGRFLRVSQTIPR 225
NP PD L S V K +L+ +G SQ +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG-ATGHSQGLV- 278
Query: 226 GGPRSQIAI-PAQGMIEFRDALTDLLEE-F--GTE-DGGYKVLSLVPHQVSQTIPR--GG 278
+ +AI F ++ + F G Y SL P + ++ G
Sbjct: 279 ----TAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 279 PRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELPEGRHMRVENKNFYFDIGQNNRG 338
P ++I + ++ + D + + + LP G+ + + N G N
Sbjct: 335 PSPMLSI--SNLT--QEQVQDYVNKTNS-------HLPAGKQVEISLVN-----GAKN-- 376
Query: 339 IYMRVSEVSQTIPRGGPRS---------QIAIPA---QGMIEFR---------------- 370
V VS G P+S + P+ Q I F
Sbjct: 377 ---LV--VS-----GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 371 -------DALTDLLEEFGTEDGGYKGE---LP-----EGRHMRVENKN 403
A + ++ + + + +P +G +RV + +
Sbjct: 427 FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS 474
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 31.2 bits (71), Expect = 0.68
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 18/54 (33%)
Query: 4 IYGPPNPDTVPDD-----------GKLKSEVMVKD-NRRYYLDLKENTRGRFLR 45
++G P P +PD+ K E+++ D +RR + D G +R
Sbjct: 144 VFGAPLPYPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFD------GIGIR 191
>1e9y_B Urease subunit beta; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.92.1.1 c.1.9.2 PDB:
1e9z_B* 3qga_C* 3qgk_C*
Length = 569
Score = 28.4 bits (63), Expect = 5.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 24 MVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQD 58
M K +R+ Y+ + T G +R D +L+ E D
Sbjct: 1 MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHD 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.402
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,850,630
Number of extensions: 426451
Number of successful extensions: 790
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 20
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)