RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10506
         (435 letters)



>d2cs7a1 d.9.2.1 (A:0-54) Pneumococcal histidine triad protein A,
           PhtA {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 55

 Score = 25.9 bits (57), Expect = 1.9
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 6/43 (13%)

Query: 393 EGRHMRVENKNFYFD----IGQNNRGIYMRVSEHYYIIPFDSL 431
           +GR+    +  + F+    I        +   +HY+ IP + L
Sbjct: 1   QGRY--TTDDGYIFNASDIIEDTGDAYIVPHGDHYHYIPKNEL 41


>d1e9yb1 b.92.1.1 (B:1-131,B:432-480) alpha-Subunit of urease
          {Helicobacter pylori [TaxId: 210]}
          Length = 180

 Score = 27.4 bits (61), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 24 MVKDNRRYYLDLKENTRGRFLRTADVNLLIIYEQD 58
          M K +R+ Y+ +   T G  +R  D +L+   E D
Sbjct: 1  MKKISRKEYVSMYGPTTGDKVRLGDTDLIAEVEHD 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.402 

Gapped
Lambda     K      H
   0.267   0.0627    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,655,073
Number of extensions: 81154
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 5
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)