BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10508
         (555 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2B3X|A Chain A, Structure Of An Orthorhombic Crystal Form Of Human
           Cytosolic Aconitase (Irp1)
 pdb|2B3Y|A Chain A, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
           Aconitase (Irp1)
 pdb|2B3Y|B Chain B, Structure Of A Monoclinic Crystal Form Of Human Cytosolic
           Aconitase (Irp1)
          Length = 888

 Score = 28.5 bits (62), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 20/87 (22%)

Query: 388 LTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALR 447
           L  +W ++D ++A    ER +   +   F+E              Y+K+   N +W AL 
Sbjct: 585 LKDIWPTRDEIQAV---ERQYV--IPGMFKEV-------------YQKIETVNESWNALA 626

Query: 448 LLSRKCPHFFLNATPNVEKNSEFIENM 474
             S K   FF N+     K+  F EN+
Sbjct: 627 TPSDKL--FFWNSKSTYIKSPPFFENL 651


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.401 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,247,179
Number of Sequences: 62578
Number of extensions: 575880
Number of successful extensions: 1321
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 1
length of query: 555
length of database: 14,973,337
effective HSP length: 104
effective length of query: 451
effective length of database: 8,465,225
effective search space: 3817816475
effective search space used: 3817816475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)