BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10508
(555 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R3N6|THOC1_MOUSE THO complex subunit 1 OS=Mus musculus GN=Thoc1 PE=1 SV=1
Length = 657
Score = 464 bits (1193), Expect = e-130, Method: Compositional matrix adjust.
Identities = 242/498 (48%), Positives = 316/498 (63%), Gaps = 44/498 (8%)
Query: 26 PTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENY---ISLCVELCMKDMCNSTLPIIL 82
P + +KK L+Q+ R L + I I+ EN ISL + + +C ++ P +L
Sbjct: 41 PGSENEKKCTLDQAFRGVLEEEI----INHSACENVLAIISLAIGGVTESVCTASTPFVL 96
Query: 83 LSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFC 142
L D D LD+C+ +F +VE NV WK TF+ + KN LLRMCNDLLRRLS+SQNTVFC
Sbjct: 97 LGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFC 156
Query: 143 GRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEE---------------MDVSSNE 187
GRI LFLA+ FP SE+SGLN+ S+FN+EN+T F +E+ MDV E
Sbjct: 157 GRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGE 216
Query: 188 TEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKL 247
+ + + ID+N Y+KFWSLQDYFRNPVQCY K+SWK F Y+E VLA FKSYKL
Sbjct: 217 MGDDEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKL 276
Query: 248 DDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTV 299
DD Q+S L G+ YFAK+LT++KL+DLQLSD+NFRR++LLQ+LILFQY V
Sbjct: 277 DDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQV 336
Query: 300 KSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGC 359
K + L +Q W++DTT++VY L+ + PPDGE FS++V+ IL EE+WN WKNEGC
Sbjct: 337 KFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGC 396
Query: 360 PELKRPLTSITDED----KKDEPDAKKKKTP---------ELTKLWN-SKDNLEACKSAE 405
P + S T K+ P+ K P ELT+LWN DN+EACKS
Sbjct: 397 PSFVKERASDTKPTRVVRKRAAPEDFLGKGPNKKILIGNEELTRLWNLCPDNMEACKSET 456
Query: 406 RDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVE 465
R++ P+LE +FEEAI+Q DP VE +YK VN+SNY WRALRLL+R+ PHFF +
Sbjct: 457 REYMPTLEEFFEEAIEQADPENMVESEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFK 516
Query: 466 KNSEFIENMVKRCVKEKP 483
E++ENMV + KE P
Sbjct: 517 SLPEYLENMVIKLAKELP 534
>sp|Q96FV9|THOC1_HUMAN THO complex subunit 1 OS=Homo sapiens GN=THOC1 PE=1 SV=1
Length = 657
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 243/498 (48%), Positives = 316/498 (63%), Gaps = 44/498 (8%)
Query: 26 PTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENY---ISLCVELCMKDMCNSTLPIIL 82
P + +KK L+Q+ R L + I I+ EN ISL + + +C ++ P +L
Sbjct: 41 PGSENEKKCTLDQAFRGILEEEI----INHSSCENVLAIISLAIGGVTEGICTASTPFVL 96
Query: 83 LSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFC 142
L D D LD+C+ +F +VE NV WK TF+ + KN LLRMCNDLLRRLS+SQNTVFC
Sbjct: 97 LGDVLDCLPLDQCDTIFTFVEKNVATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFC 156
Query: 143 GRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEE---------------MDVSSNE 187
GRI LFLA+ FP SE+SGLN+ S+FN+EN+T F +E+ MDV E
Sbjct: 157 GRIQLFLARLFPLSEKSGLNLQSQFNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGE 216
Query: 188 TEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKL 247
+ + + ID+N Y+KFWSLQDYFRNPVQCY K+SWK F Y+E VLA FKSYKL
Sbjct: 217 MGDEEAPTTCSIPIDYNLYRKFWSLQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKL 276
Query: 248 DDVQSS------LNPSGD--YFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTV 299
DD Q+S L G+ YFAK+LT++KL+DLQLSD+NFRR++LLQ+LILFQY V
Sbjct: 277 DDTQASRKKMEELKTGGEHVYFAKFLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQV 336
Query: 300 KSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGC 359
K + L +Q W++DTT++VY L+ + PPDGE FS++V+ IL EE+WN WKNEGC
Sbjct: 337 KFKSSNYVLTDEQSLWIEDTTKSVYQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGC 396
Query: 360 PELKRPLTSITDED----KKDEPDAKKKKTP---------ELTKLWN-SKDNLEACKSAE 405
P + TS T K+ P+ K P ELT+LWN DN+EACKS
Sbjct: 397 PSFVKERTSDTKPTRIIRKRTAPEDFLGKGPTKKILMGNEELTRLWNLCPDNMEACKSET 456
Query: 406 RDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVE 465
R+ P+LE +FEEAI+Q DP VE +YK VN+SNY WRALRLL+R+ PHFF +
Sbjct: 457 REHMPTLEEFFEEAIEQADPENMVENEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFK 516
Query: 466 KNSEFIENMVKRCVKEKP 483
E++ENMV + KE P
Sbjct: 517 SLPEYLENMVIKLAKELP 534
>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1
Length = 752
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 125/448 (27%), Positives = 197/448 (43%), Gaps = 72/448 (16%)
Query: 53 IDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQ 112
+D+ VI N I+ + C+ LP ++L + D+ T+++C +L+ Y E ++ K
Sbjct: 83 LDLLVIGNEIN-------ESFCDHLLPFLILEELMDIHTVNECAKLYEYFETRPSLMKGI 135
Query: 113 TFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENI 172
LLR+ N+LLRRLSR +N+ FCGRI + L+K FP ERSG N+ ++N +
Sbjct: 136 VSNRGRGPVLLRISNELLRRLSRQENSSFCGRIDILLSKAFPPEERSGANLRGDYNT--V 193
Query: 173 TEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFT 232
FG E S+ ++ TD K+ F Y W LQ NP + + F
Sbjct: 194 HSFGKVELSPPSTPISDRTDLSYHKKLNTLFTAY---WDLQCMCSNPPKLLASDTLPKFI 250
Query: 233 SYAETVLAAFKSY------------KLDDVQSSL------NPSGDYFAKYLTNQKLLDLQ 274
A + + AF+S +D SSL + +KY+ ++ L + Q
Sbjct: 251 DAAGSAIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQ 310
Query: 275 LSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLIKQTPPDG 334
LSD +FR +LQ +I+F + K R E L EKW T + V ++ + D
Sbjct: 311 LSDEDFRLQAILQLIIIFDFLLDHSKERIERRTL----EKW---TNKAVIPIVILSDEDT 363
Query: 335 EHFSQV-------------------VKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKK 375
+++ +K I+ E +W WK GCP L++PL D+
Sbjct: 364 SKLNELSKEAYSFLHTARCGSVQRTIKEIIHIEGNWKLWKGLGCPSLEKPLVDKAAIDEA 423
Query: 376 DEPDAKKKKTP----------ELTKLWN--SKDNLEACKSAERDFTPSLESYFEEA-IQQ 422
E K TP L++LW ++ L+ K ER PS ES+ +
Sbjct: 424 VEGLKKLTNTPVKLRFAMGNAALSRLWEQAGENTLDDLKKEERYRIPSPESFLSGVKADK 483
Query: 423 MDPAAAVEEQYKKVNDSNYA---WRALR 447
+ AV + K ++ + A WRA R
Sbjct: 484 FEIEEAVRDDDKHFHEQSLATKTWRAFR 511
>sp|P59924|THOC1_RAT THO complex subunit 1 OS=Rattus norvegicus GN=Thoc1 PE=2 SV=1
Length = 343
Score = 99.8 bits (247), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 1/98 (1%)
Query: 387 ELTKLWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRA 445
ELT+LWN DN+EACK R++ P LE +FEEAI+Q D VE +YK +N+SNY W
Sbjct: 115 ELTRLWNLCPDNMEACKLETREYMPILEEFFEEAIEQADAENMVESEYKAINNSNYGWST 174
Query: 446 LRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKP 483
LR L+ + PHFF + +E++ENMV + KE P
Sbjct: 175 LRFLAWRSPHFFQPTNQQFKNMTEYLENMVIKLAKELP 212
>sp|A1U1F0|SYP_MARAV Proline--tRNA ligase OS=Marinobacter aquaeolei (strain ATCC 700491
/ DSM 11845 / VT8) GN=proS PE=3 SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 322 TVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDED 373
+V +L+ + D S +V LIL+G+ N+ K E P + PLT TDE+
Sbjct: 277 SVKTLLVKAEADENGESGLVALILRGDHTLNEIKAENLPGIAEPLTMATDEE 328
>sp|Q2NRN0|SYP_SODGM Proline--tRNA ligase OS=Sodalis glossinidius (strain morsitans)
GN=proS PE=3 SV=1
Length = 574
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 321 ETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKK 375
+TV +L+ + D H +V L+++G+ H N K E P++ PLT ++E+ +
Sbjct: 276 KTVKTLLVRAREDAGH--PLVALMVRGDHHLNDVKAEKLPQVAAPLTFASEEEIR 328
>sp|Q8WWK9|CKAP2_HUMAN Cytoskeleton-associated protein 2 OS=Homo sapiens GN=CKAP2 PE=1
SV=1
Length = 683
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 43/179 (24%)
Query: 356 NEGCPELKRPLTSITDEDKKDEPDAKKKKTPELTKLWNSKDNLEACKSAERDFTPSLE-- 413
NEGCP K + ++ K+ PDAKK L K W C + T +E
Sbjct: 435 NEGCP--KEDILVTLNDLIKNIPDAKK-----LVKYW-------ICLALIEPITSPIENI 480
Query: 414 -SYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIE 472
+ +E+AI + A +EE + D +L+ K ++ + E
Sbjct: 481 IAIYEKAI--LAGAQPIEEMRHTIVD---------ILTMKS-----------QEKANLGE 518
Query: 473 NMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEE---IQEEEKEEDWEAKADPEGD 528
NM K C ++ ++S GVD DP ++E+++K Q+ EKE+D + K DP D
Sbjct: 519 NMEKSCASKEEVKEVSIEDTGVDVDPEKLEMESKLHRNLLFQDCEKEQDNKTK-DPTHD 576
>sp|Q5R7F8|CKAP2_PONAB Cytoskeleton-associated protein 2 OS=Pongo abelii GN=CKAP2 PE=2
SV=1
Length = 682
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 78/179 (43%), Gaps = 43/179 (24%)
Query: 356 NEGCPELKRPLTSITDEDKKDEPDAKKKKTPELTKLWNSKDNLEACKSAERDFTPSLE-- 413
NEGCP K + ++ K+ PDAKK L K W C + T +E
Sbjct: 434 NEGCP--KGDILITLNDLIKNIPDAKK-----LVKYW-------ICLALIEPITSPIENI 479
Query: 414 -SYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIE 472
+ +E+AI + A +EE + D +L+ K ++ + E
Sbjct: 480 IAIYEKAI--LAGAQPIEEMRHTIVD---------ILTMKS-----------QEKANLGE 517
Query: 473 NMVKRCVKEKPSSQISGNGNGVDQDPAEVEVDTKSEE---IQEEEKEEDWEAKADPEGD 528
NM K C ++ ++S GVD DP ++E+++K Q+ EKE+D + K DP D
Sbjct: 518 NMEKSCASKEEVKEVSIEDTGVDVDPEKLEMESKHHRNLLFQDCEKEQDNKTK-DPTHD 575
>sp|P36126|SPO14_YEAST Phospholipase D1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SPO14 PE=1 SV=3
Length = 1683
Score = 33.1 bits (74), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 222 CYNKVSWKMFTSYA-----ETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQKLLDLQLS 276
C+ K S K F + A E L + S LDD + + + F+ YL N+K L++ L+
Sbjct: 1333 CWKKESNKKFKADATEQLKEWALNSLASKVLDDKEMIKSEIPEGFSNYLPNEKDLEMYLT 1392
Query: 277 D---TNFRRYVLLQFLILFQYFTSTVKSR-GEGLELKSDQEKWVKDTTETV 323
D TN ++ +L+ + QY + + R + L+ D + + +TE+
Sbjct: 1393 DKTVTNRNKWSMLKRICYLQYLSHKLDERKTQRLKKIKDMRRHLSSSTEST 1443
>sp|P23989|BGAL_STRTR Beta-galactosidase OS=Streptococcus thermophilus GN=lacZ PE=3 SV=1
Length = 1026
Score = 32.7 bits (73), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 26/139 (18%)
Query: 212 LQDYFRN-----PVQCYNKVSWKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLT 266
+ DYFR+ PV Y V+W Y + D++S + +YLT
Sbjct: 468 MADYFRSVDNTRPVH-YEGVAWCREFDY------------ITDIESRMYAKPADIEEYLT 514
Query: 267 NQKLLDLQ-LSDTNFRRYVLL---QFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTET 322
KL+DL +SD +F L Q + + T+ + G GL+L +D EK+ +
Sbjct: 515 TGKLVDLSSVSDKHFASGNLTNKPQKPYISCEYMHTMGNSGGGLQLYTDLEKYPEYQGGF 574
Query: 323 VYSLIKQ----TPPDGEHF 337
++ I Q T P+G F
Sbjct: 575 IWDFIDQAIYKTLPNGSEF 593
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,683,414
Number of Sequences: 539616
Number of extensions: 9344218
Number of successful extensions: 44107
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 42744
Number of HSP's gapped (non-prelim): 1015
length of query: 555
length of database: 191,569,459
effective HSP length: 123
effective length of query: 432
effective length of database: 125,196,691
effective search space: 54084970512
effective search space used: 54084970512
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)