Query psy10508
Match_columns 555
No_of_seqs 143 out of 168
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 19:59:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10508.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10508hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2491|consensus 100.0 7E-137 2E-141 1092.4 32.3 474 4-484 27-534 (674)
2 PF11957 efThoc1: THO complex 100.0 7E-113 1E-117 927.0 31.5 425 57-491 2-481 (491)
3 PF15451 DUF4632: Domain of un 33.8 23 0.00049 29.3 1.2 30 422-451 10-40 (71)
4 KOG4368|consensus 32.8 1.3E+02 0.0027 35.0 7.1 93 31-130 79-171 (757)
5 PF05528 Coronavirus_5: Corona 28.8 32 0.0007 29.3 1.4 25 431-455 53-77 (82)
6 PF06720 Phi-29_GP16_7: Bacter 27.2 45 0.00097 30.8 2.1 37 74-111 82-118 (130)
7 PF12872 OST-HTH: OST-HTH/LOTU 25.1 80 0.0017 25.4 3.1 49 315-363 2-51 (74)
8 PHA02621 agnoprotein; Provisio 24.7 46 0.00099 27.4 1.5 24 129-152 2-35 (68)
9 PF09454 Vps23_core: Vps23 cor 22.3 1.7E+02 0.0036 24.2 4.4 41 315-356 23-63 (65)
10 PF01736 Polyoma_agno: Polyoma 22.2 57 0.0012 26.5 1.6 24 129-152 2-35 (62)
No 1
>KOG2491|consensus
Probab=100.00 E-value=7e-137 Score=1092.41 Aligned_cols=474 Identities=46% Similarity=0.830 Sum_probs=439.3
Q ss_pred hHHHhhccCChhhHHHHhhhcCCCChHHHhhHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcccccccchHHHH
Q psy10508 4 SFQLNFDKSQLNVVSDKYALYKPTCDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILL 83 (555)
Q Consensus 4 ~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~e~A~R~~l~~l~~~~~id~~~l~~ll~l~~~~~~~~~c~~~lpf~Ll 83 (555)
+.+.|+.+..++.+.+.|.+.+|.+.++++-.+++|+|-.+.+.+.+ ++..|.+||++++.+++.|+|+.++||+||
T Consensus 27 ~~~ta~~~e~v~~lv~~f~~~~~~~~a~~~~~~~~~~~~~lee~l~~---~~~~I~~ll~vv~~~~~~~~cs~~~Pf~lL 103 (674)
T KOG2491|consen 27 SKRTALNNENVELLVSTFLQVPGFSEAEKKCTLAQAFRGILEERLDN---HFHCILALLSVVINGVTEGICSASTPFVLL 103 (674)
T ss_pred HHHHHHhhhhHHHHHHHHHhCchhhhhhhhchHHhhhhhhhHHHHHh---HhhhhHHHHHHHHHhhhHhhhcCCccHHHH
Confidence 56778889999999999999999999999999999999999999888 566799999999999999999999999999
Q ss_pred HhhhcccChHHHHHHhHhhhhhhhhhhhcccccccchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508 84 SDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI 163 (555)
Q Consensus 84 eDl~d~~TI~~C~~iF~~lEsr~~~~~~~~~~~~~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl 163 (555)
+||+|++|++.|.+||+|||+|+.+|++..|+.+|||+||||||+|||||||++||||||||+||||++|||+||||+|+
T Consensus 104 eDl~dm~tl~eCkkiF~yvE~~~~~~K~~~f~~~~kn~lLR~cNdLLRRLSrt~ntvFCGRI~lfLsrfFPlsErSG~Nl 183 (674)
T KOG2491|consen 104 EDLLDMSTLDECKKIFTYVEKNVATWKSNTFFAAGKNVLLRMCNDLLRRLSRTQNTVFCGRIQLFLSRFFPLSERSGLNL 183 (674)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHccchhhhcccchhHHHHHHHHHHHhhcccceehHHHHHHHHHhCCchhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCccccCCCCCcccccc-----ccccCCCChhhHHhhhhccccccCcccccccccHHHHHHHHHHH
Q psy10508 164 ISEFNVENITEFGGDEEMDVSSNETEETDTE-----EVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWKMFTSYAETV 238 (555)
Q Consensus 164 rGefN~eNvT~fe~~~~~~~~~~~~e~~e~~-----~~~~~~vD~~lY~~FWsLQ~~FsnP~~l~~k~~w~~F~~~~~~V 238 (555)
+|+||++|||.|+.++.+++..+ .++.+++ +.+.++|||+||++|||||+|||||++||++.+|.+|+.+++.|
T Consensus 184 ~g~fN~~nvt~fg~~e~d~~~~~-~e~~et~~~e~~~~~~ikvd~~lY~~FWSLQ~~f~NP~sly~k~kw~~F~~~~~~v 262 (674)
T KOG2491|consen 184 QGQFNLENVTVFGTNEQDSTLGD-VEEGETGDEEAPTTCSIKVDYNLYRKFWSLQDYFSNPNSLYEKIKWKKFLKYLEEV 262 (674)
T ss_pred hcccccccceecccccccccccc-cCCCCcccccCCCcccccccHHHHHHHHHHHHHhcCcHHHhcchHHHHHHHHHHHH
Confidence 99999999999999986654432 2222333 33558999999999999999999999999999999999999999
Q ss_pred HHHHhccccccccCC---------CC------CCCCCcccccCchhhHHhhhcChhHHHHHHHHHHHHHHHhhhhcccCC
Q psy10508 239 LAAFKSYKLDDVQSS---------LN------PSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRG 303 (555)
Q Consensus 239 L~~F~s~kl~~~~~~---------~~------~~~~ff~KYLTS~kLf~LQL~D~~FRR~iLvQ~LIlfqyL~s~~K~k~ 303 (555)
|.+|+++++++..+. +. .+.+||+|||||++||.|||+|++||||||+|+||+||||+..+|+|.
T Consensus 263 Lq~F~S~kle~~~~~sn~~~ee~at~~~s~~~i~k~ff~Kflts~kLlalQLsDssFRr~~LlQ~lIiFqYL~~~~Kfk~ 342 (674)
T KOG2491|consen 263 LQVFKSYKLEDTFGESNEKMEELATGGESVKYIDKGFFAKFLTSPKLLALQLSDSSFRRHILLQYLIIFQYLKAQSKFKS 342 (674)
T ss_pred HHHHhhhhhhhhhcccccccchhhhcCcchhhhhcchhHHHhccHHHhhhhcCchHHHHHHHHHHHHHHHHHhhhccccc
Confidence 999999999887432 12 246699999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhchhhhHhhhhcCCCCCCCCCCCCCccccCCCCCCCCC
Q psy10508 304 EGLELKSDQEKWVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKK 383 (555)
Q Consensus 304 ~~~~L~ee~~~wi~~~~~~V~klL~~t~p~G~~F~~~V~~IL~REknWv~WK~egCp~fekp~~~~~~~~~~~~~~~KR~ 383 (555)
+.++|+++|+.||+++.++||++|..|||+|+.|.++|+|||.||+||+.||++|||+|+++|... .++....+||.
T Consensus 343 ~~~vLsdeqa~~l~e~e~~vYklL~~Tpp~G~~f~r~v~hIl~rE~nWn~WKn~GCp~feK~p~~D---k~p~~~~kkr~ 419 (674)
T KOG2491|consen 343 SKYVLSDEQALWLKECEKRVYKLLEETPPDGKRFSRTVEHILNREENWNSWKNEGCPSFEKEPTSD---KKPTRIIKKRR 419 (674)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHhhhhhhhcCCcccccCCccc---cccchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999987764 33333223332
Q ss_pred -----------C--ChhhhhhhC-CCChhhhhhhhhccCCCCHHHHhHHHHhcCCCCCCcHHHHhhhcCCccchhHHHhh
Q psy10508 384 -----------K--TPELTKLWN-SKDNLEACKSAERDFTPSLESYFEEAIQQMDPAAAVEEQYKKVNDSNYAWRALRLL 449 (555)
Q Consensus 384 -----------~--~~eLs~Lwn-~~dnl~alk~~~R~~~Psle~f~~~~ie~~DPe~~iEeeyk~~n~~~f~WRaLRll 449 (555)
. |++|+|||+ +||||+|||+++|+++|+|++|+++++++|||+++||++||+.|++.|+|||||++
T Consensus 420 ~~l~~~p~~r~~lGN~eLtrLW~~apdNl~acKseqR~~iP~le~fl~~~~ek~Dpe~~vedeyh~~n~s~~~WRAlRll 499 (674)
T KOG2491|consen 420 AFLGKGPTKRFLLGNEELTRLWNLAPDNLEACKSEQRERIPTLEDFLEEPAEKMDPENMVEDEYHAQNNSAYGWRALRLL 499 (674)
T ss_pred ccccCCcccceecCCHHHHHHHHhCCccHHHHhHHHhhcCCCHHHHhhchHhhcCHHHhhHHHHHHhhhhhHHHHHHHHH
Confidence 1 999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcccCCCCcccchhHHHHHHHHHhhcCCC
Q psy10508 450 SRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKPS 484 (555)
Q Consensus 450 ar~~l~~F~~~~~~~~~~~~~LE~~v~~l~~e~~~ 484 (555)
||++||+|+++++|+.++.+|||.|+.++++++|-
T Consensus 500 arqsp~~Fs~t~~~~~~i~~~lE~~~~kl~~~~pP 534 (674)
T KOG2491|consen 500 ARQSPHFFSPTNQPFKSICEYLENMVIKLAKELPP 534 (674)
T ss_pred HhhCcccCCccCCchhhHHHHHHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999943
No 2
>PF11957 efThoc1: THO complex subunit 1 transcription elongation factor; InterPro: IPR021861 The THO complex is a nuclear complex that is required for transcription elongation through genes containing tandemly repeated DNA sequences. The THO complex is also part of the TREX (TRanscription EXport) complex that is involved in coupling transcription to export of mRNAs to the cytoplasm.
Probab=100.00 E-value=6.7e-113 Score=927.00 Aligned_cols=425 Identities=47% Similarity=0.837 Sum_probs=376.5
Q ss_pred HHHHHHHHHHHhhhccc--ccccchHHHHHhhhcccChHHHHHHhHhhhhhhhhhhhcccccccchh-HHHHHHHHHHhh
Q psy10508 57 VIENYISLCVELCMKDM--CNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNN-LLRMCNDLLRRL 133 (555)
Q Consensus 57 ~l~~ll~l~~~~~~~~~--c~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~~~~~~~~~~~~~k~~-lLR~CN~LLRRL 133 (555)
+|+++||+++++++.+. |++++||+|+||+||++||++|+.+|+|||+|+++|+.+.++.+||+. ||||||+|||||
T Consensus 2 ~l~~lLD~~~~~~~~~~~~~~~~~~f~L~edl~d~~ti~~c~~~F~y~Esr~~~~~~~~~~~~~k~~~lLR~cN~LLrRL 81 (491)
T PF11957_consen 2 KLWNLLDLVLILSENEISPCDWALPFFLLEDLLDSLTIPDCEKVFWYVESRRERFKAGNFFQRGKNLVLLRMCNELLRRL 81 (491)
T ss_pred cHHHHHHHHHHHHHhcccccccccHHHHHHHHHhhCcHHHHHHHHHHHhccHHHHhcccccccCcccccHHHHHHHHHHH
Confidence 57899999999999999 999999999999999999999999999999999999999999999986 999999999999
Q ss_pred hccCCcchhhHHHHHHhhhcCCCCCcccccccccccccccccCCCCccccCCCCCccccccccccCCCChhhHHhhhhcc
Q psy10508 134 SRSQNTVFCGRILLFLAKFFPFSERSGLNIISEFNVENITEFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFWSLQ 213 (555)
Q Consensus 134 Srs~dtvFCGRIliFLs~~FPLsErSgvNlrGefN~eNvT~fe~~~~~~~~~~~~e~~e~~~~~~~~vD~~lY~~FWsLQ 213 (555)
||++||||||||++|||++|||+||||||++|+||++|+|.|+..... ..+.+++....+||+||++||+||
T Consensus 82 Srt~~~~fcGRi~~FLs~~fPl~ErSg~Nl~g~fn~~n~T~~~~~~~~--------~~~~~~~~~~~~D~~~Y~~FW~LQ 153 (491)
T PF11957_consen 82 SRTQDTVFCGRILIFLSQLFPLSERSGVNLRGEFNVENVTTFEEQEEG--------EDEDADSDKMQIDYNLYPKFWSLQ 153 (491)
T ss_pred HhcccHHHHHHHHHHHHHHCCCcccccCcccccccccccccccccccc--------cCccCccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999921110 011223356789999999999999
Q ss_pred ccccCcccccccccHHHHHHHHHHHHHHHhcccccc--------------ccCC----------CCCCC-CCcccccCch
Q psy10508 214 DYFRNPVQCYNKVSWKMFTSYAETVLAAFKSYKLDD--------------VQSS----------LNPSG-DYFAKYLTNQ 268 (555)
Q Consensus 214 ~~FsnP~~l~~k~~w~~F~~~~~~VL~~F~s~kl~~--------------~~~~----------~~~~~-~ff~KYLTS~ 268 (555)
+||+||+.||++.+|.+|.++++.||++|.+++++. .+.+ ++... +||||||||+
T Consensus 154 ~~f~nP~~~~~~~~~~~f~~~l~~vl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~kyLTs~ 233 (491)
T PF11957_consen 154 EFFSNPPQLFEPDNWKTFKSYLNAVLDAFEEIKLEFYRRIKSSSKKIADDNRALNKRKRSPSDSEEISSSHFFPKYLTSR 233 (491)
T ss_pred HHhcChHHHhChhHHHHHHHHHHHHHHHHHhcchhhhhhccccccccchhhhhhcccccccchhhhhhhhhccccccCCH
Confidence 999999999999999999999999999999988751 1111 01122 3999999999
Q ss_pred hhHHhhhcChhHHHHHHHHHHHHHHHhhhhcccCCCC------------CCCChhhHHHHHHHHHHHHHHHhhCCCCchh
Q psy10508 269 KLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEG------------LELKSDQEKWVKDTTETVYSLIKQTPPDGEH 336 (555)
Q Consensus 269 kLf~LQL~D~~FRR~iLvQ~LIlfqyL~s~~K~k~~~------------~~L~ee~~~wi~~~~~~V~klL~~t~p~G~~ 336 (555)
+||+|||+|++||||||||+||+||||++.++++... ++|+++|++||++++.+|+++|++|||+|+.
T Consensus 234 ~Ll~LqL~D~~FRR~iLvQ~lIl~~~L~sl~~~~~~~~~~~~nk~~~~~~~l~~~~~~wi~~~~~~v~~~L~~~~p~G~~ 313 (491)
T PF11957_consen 234 KLLDLQLSDPSFRRQILVQILILFQYLLSLTKFKKEKLFYKKNKSVIYSFVLSEEDKKWIKETKKRVYKLLKETPPDGPQ 313 (491)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccccccccccCCHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 9999999999999999999999999999988765433 8999999999999999999999999999999
Q ss_pred HHHHHHHHHhchhhhHhhhhcCCCCCCCCCCCCCccccCCCCCCCC-----CC-----ChhhhhhhC-CCCh-hhhhhhh
Q psy10508 337 FSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKK-----KK-----TPELTKLWN-SKDN-LEACKSA 404 (555)
Q Consensus 337 F~~~V~~IL~REknWv~WK~egCp~fekp~~~~~~~~~~~~~~~KR-----~~-----~~eLs~Lwn-~~dn-l~alk~~ 404 (555)
|+++|+|||+||+||++||++|||+|++| .++.....+....+|| ++ |++|++||| ++++ |++|+.+
T Consensus 314 F~~~v~~iL~rE~nW~~WK~~gCp~fe~~-~~~~~~~~~~~~~~K~~~~~~~~~~~mGn~~Ls~LW~~~~~~gL~~lk~~ 392 (491)
T PF11957_consen 314 FARMVEHILEREKNWVRWKNEGCPPFEKP-VSPESVPEAKESFKKRGFPKRPRKIKMGNPELSRLWNLKPDNGLEALKDP 392 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcccc-cCccccccccchhhhhccccccccCCCCChhHHHHhCCCCcchHHHHhcc
Confidence 99999999999999999999999999999 4443222222222222 22 999999999 8888 9999999
Q ss_pred hccCCCCHHHHhHHHHh---cCCCCCCcHHHHhhhcCCccchhHHHhhhhcCCCCcccCCCCcccchhHHHHHHHHHhhc
Q psy10508 405 ERDFTPSLESYFEEAIQ---QMDPAAAVEEQYKKVNDSNYAWRALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKE 481 (555)
Q Consensus 405 ~R~~~Psle~f~~~~ie---~~DPe~~iEeeyk~~n~~~f~WRaLRllar~~l~~F~~~~~~~~~~~~~LE~~v~~l~~e 481 (555)
.|+++|++++|++++++ ++||++++|++|+.+++++|+|||||++|+++||+|..++++ +.|++|++.|+++.+++
T Consensus 393 ~r~~~p~le~f~~~~~~~~~~~d~~~~~e~e~~~~~~~~~~WraLRll~~~~l~~F~k~~~~-~~l~~l~~~~~~~~~~e 471 (491)
T PF11957_consen 393 ERYFLPSLESFFEEIIEDKFEMDPENQIEKEYKPENKAVKQWRALRLLRRQSLHFFDKINEP-TGLKGLFEEMLKKEAKE 471 (491)
T ss_pred cccCCCCHHHHHHHHHHhHHhcCcccChhHHHHHhcchhhHHHHHHHHhhCCHHhcCCcccc-cCHHHHHhhhhhccccc
Confidence 99999999999999999 999999999999999999999999999999999999999988 99999999999988888
Q ss_pred CCCCccCCCC
Q psy10508 482 KPSSQISGNG 491 (555)
Q Consensus 482 ~~~~~~~~~~ 491 (555)
.+.+......
T Consensus 472 ~~~~~~~~~~ 481 (491)
T PF11957_consen 472 EPDEEEEEKN 481 (491)
T ss_pred cccchhhhhh
Confidence 7555444333
No 3
>PF15451 DUF4632: Domain of unknown function (DUF4632)
Probab=33.82 E-value=23 Score=29.31 Aligned_cols=30 Identities=37% Similarity=0.432 Sum_probs=18.5
Q ss_pred cCCCCCCcHHH-HhhhcCCccchhHHHhhhh
Q psy10508 422 QMDPAAAVEEQ-YKKVNDSNYAWRALRLLSR 451 (555)
Q Consensus 422 ~~DPe~~iEee-yk~~n~~~f~WRaLRllar 451 (555)
++|.+++.|++ .+-..-.+-+|||||-+=.
T Consensus 10 dad~e~d~e~ese~gagprs~gwralrrlwd 40 (71)
T PF15451_consen 10 DADGEADEEEESEKGAGPRSAGWRALRRLWD 40 (71)
T ss_pred ccccccccccccccCCCCccccHHHHHHHHH
Confidence 45666654332 2334556889999996543
No 4
>KOG4368|consensus
Probab=32.79 E-value=1.3e+02 Score=35.04 Aligned_cols=93 Identities=18% Similarity=0.357 Sum_probs=66.8
Q ss_pred HHhhHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcccccccchHHHHHhhhcccChHHHHHHhHhhhhhhhhhh
Q psy10508 31 DKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWK 110 (555)
Q Consensus 31 d~~~~~e~A~R~~l~~l~~~~~id~~~l~~ll~l~~~~~~~~~c~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~~~~~ 110 (555)
--+++|-+|.-..+..+|..+..|++.+-++|+-.+.-|.++.++.+--. +++ .+.+-.-|+.+.++|-.|++--.
T Consensus 79 ~~~~a~~~~~~~~~~k~l~~~~l~~~~~~~~l~~~~~~c~kd~is~~k~w-~f~---~~~s~~~~e~~~~~l~n~~~~~~ 154 (757)
T KOG4368|consen 79 QVTAAVAHAVEQQMQKLLEETQLDMNEFDNLLQPIIDTCTKDAISAGKNW-MFS---NAKSPPHCELMAGHLRNRITADG 154 (757)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhHHHHHHhhhh-hhh---cCCCchHHHHHHHHHHhhhcccc
Confidence 35678888888999999999999999999999988888888877766543 222 35667889999999977654322
Q ss_pred hcccccccchhHHHHHHHHH
Q psy10508 111 QQTFFMSCKNNLLRMCNDLL 130 (555)
Q Consensus 111 ~~~~~~~~k~~lLR~CN~LL 130 (555)
+. | --++-||=+.||.|
T Consensus 155 ~~-~--~lrlh~~ylind~~ 171 (757)
T KOG4368|consen 155 AH-F--ELRLHLIYLINDVL 171 (757)
T ss_pred cc-h--hhhhhhHHHHHHHH
Confidence 21 1 12445666677755
No 5
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=28.79 E-value=32 Score=29.31 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=20.7
Q ss_pred HHHhhhcCCccchhHHHhhhhcCCC
Q psy10508 431 EQYKKVNDSNYAWRALRLLSRKCPH 455 (555)
Q Consensus 431 eeyk~~n~~~f~WRaLRllar~~l~ 455 (555)
=+.+..||-..+|+|.|+|.|+.|.
T Consensus 53 C~eH~~nNnllSw~av~~le~qt~~ 77 (82)
T PF05528_consen 53 CEEHQSNNNLLSWQAVKQLERQTPQ 77 (82)
T ss_pred cHHHhcccchHhHHHHHHHHhhCcc
Confidence 3456778899999999999998764
No 6
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=27.24 E-value=45 Score=30.78 Aligned_cols=37 Identities=22% Similarity=0.432 Sum_probs=28.3
Q ss_pred ccccchHHHHHhhhcccChHHHHHHhHhhhhhhhhhhh
Q psy10508 74 CNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQ 111 (555)
Q Consensus 74 c~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~~~~~~ 111 (555)
..-.+|..++||+. .+-+..=+.+.+|+|..+..|+-
T Consensus 82 SnIrIP~DIIEdl~-~~~L~Te~eVmnYiEnqR~~WKL 118 (130)
T PF06720_consen 82 SNIRIPSDIIEDLV-NQRLQTEQEVMNYIENQRTYWKL 118 (130)
T ss_dssp TT----HHHHHHHH-TT--SSHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhh
Confidence 34578999999999 89999999999999999999974
No 7
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.09 E-value=80 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.018 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhchhhhHhhhhcCCCCCC
Q psy10508 315 WVKDTTETVYSLIKQTPP-DGEHFSQVVKLILKGEEHWNQWKNEGCPELK 363 (555)
Q Consensus 315 wi~~~~~~V~klL~~t~p-~G~~F~~~V~~IL~REknWv~WK~egCp~fe 363 (555)
+....+..|.++|.+.++ +|......+...+.+.-..-..+.-||.++.
T Consensus 2 ~~~~~~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~ 51 (74)
T PF12872_consen 2 SLEELKKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLS 51 (74)
T ss_dssp --HHHHHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHH
T ss_pred hHHHHHHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHH
Confidence 456788899999966655 6767777777766666588889999998774
No 8
>PHA02621 agnoprotein; Provisional
Probab=24.74 E-value=46 Score=27.39 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=16.2
Q ss_pred HHHhhhccCC----------cchhhHHHHHHhhh
Q psy10508 129 LLRRLSRSQN----------TVFCGRILLFLAKF 152 (555)
Q Consensus 129 LLRRLSrs~d----------tvFCGRIliFLs~~ 152 (555)
.||+|||... --=.-||+||+--+
T Consensus 2 vlrqlsrqasvkv~ktwtgtkkraqri~if~le~ 35 (68)
T PHA02621 2 VLRQLSRQASVKVGKTWTGTKKRAQRIFIFILEL 35 (68)
T ss_pred chHHhhhhheeeeccccccchHHHHHHHHHHHHH
Confidence 5899998432 23356999998654
No 9
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=22.34 E-value=1.7e+02 Score=24.25 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhchhhhHhhhh
Q psy10508 315 WVKDTTETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKN 356 (555)
Q Consensus 315 wi~~~~~~V~klL~~t~p~G~~F~~~V~~IL~REknWv~WK~ 356 (555)
-+.++.-.+-+.|++...+-..|.+.|+. |.||+.|.++-.
T Consensus 23 AieDtiy~L~~al~~g~I~~d~~lK~vR~-LaReQF~~Ral~ 63 (65)
T PF09454_consen 23 AIEDTIYYLDRALQRGSIDLDTFLKQVRS-LAREQFLKRALI 63 (65)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHHHHHHHHHh
Confidence 36677777778888777777788888865 999999998754
No 10
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=22.18 E-value=57 Score=26.48 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=15.8
Q ss_pred HHHhhhccCC----------cchhhHHHHHHhhh
Q psy10508 129 LLRRLSRSQN----------TVFCGRILLFLAKF 152 (555)
Q Consensus 129 LLRRLSrs~d----------tvFCGRIliFLs~~ 152 (555)
.||+|||... --=.-||+||+--+
T Consensus 2 VLRqLSRqAsVkv~ktWtgtKkrAQRifiFiLEl 35 (62)
T PF01736_consen 2 VLRQLSRQASVKVGKTWTGTKKRAQRIFIFILEL 35 (62)
T ss_pred hHHHHhHhhhheeccccccchHHHHHHHHHHHHH
Confidence 4888888432 23456999997554
Done!