Query psy10508
Match_columns 555
No_of_seqs 143 out of 168
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 19:59:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10508.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10508hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bnk_A Early protein GP16.7; D 41.7 8.7 0.0003 30.3 1.1 37 75-112 20-56 (67)
2 3g1g_A GAG polyprotein, capsid 14.8 1.4E+02 0.0049 25.1 3.7 42 308-349 30-77 (87)
3 3jyw_O 60S ribosomal protein L 13.1 1.5E+02 0.0051 26.3 3.6 43 119-163 2-44 (121)
4 3j21_P 50S ribosomal protein L 12.5 1.5E+02 0.0051 26.1 3.4 44 118-163 6-49 (120)
5 1xrx_A SEQA protein; protein f 12.0 1.2E+02 0.0041 23.0 2.1 31 92-135 4-34 (50)
6 3iz5_R 60S ribosomal protein L 11.7 1.8E+02 0.0062 27.7 3.9 45 118-164 21-65 (188)
7 1x4q_A U4/U6 small nuclear rib 11.7 6.4E+02 0.022 20.9 7.1 66 34-106 16-81 (92)
8 3izc_R 60S ribosomal protein R 10.8 1.8E+02 0.006 27.8 3.5 44 118-163 21-64 (186)
9 2igp_A Retinoblastoma-associat 10.6 2.8E+02 0.0096 24.2 4.6 17 331-347 43-59 (120)
10 4a17_N RPL18, 60S ribosomal pr 10.4 1.5E+02 0.0052 28.1 2.9 44 118-163 22-65 (181)
No 1
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=41.73 E-value=8.7 Score=30.34 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=32.7
Q ss_pred cccchHHHHHhhhcccChHHHHHHhHhhhhhhhhhhhc
Q psy10508 75 NSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQ 112 (555)
Q Consensus 75 ~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~~~~~~~ 112 (555)
.-.+|..++|||. .+-+..=+.+.+|+|..+..|+-.
T Consensus 20 nIrIP~DIIEdl~-~~~L~te~EVmnYiEnqR~~WKLE 56 (67)
T 2bnk_A 20 NIRIPSDIIEDLV-NQRLQSEQEVLNYIETQRTYWKLE 56 (67)
T ss_dssp TCCCCHHHHHHHH-TTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHH-HHhhhhHHHHHHHHHhhHhHHhhh
Confidence 4478999999999 888999999999999999999743
No 2
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=14.82 E-value=1.4e+02 Score=25.12 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=30.4
Q ss_pred CChhhHHHHHH------HHHHHHHHHhhCCCCchhHHHHHHHHHhchh
Q psy10508 308 LKSDQEKWVKD------TTETVYSLIKQTPPDGEHFSQVVKLILKGEE 349 (555)
Q Consensus 308 L~ee~~~wi~~------~~~~V~klL~~t~p~G~~F~~~V~~IL~REk 349 (555)
++.+-+.|+.+ ....|.++|+.-|.+-..=.++|++||+|++
T Consensus 30 ~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~ 77 (87)
T 3g1g_A 30 LPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQK 77 (87)
T ss_dssp SCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHhh
Confidence 55566788744 4456788888766555555899999999986
No 3
>3jyw_O 60S ribosomal protein L18(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_O
Probab=13.10 E-value=1.5e+02 Score=26.26 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508 119 KNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI 163 (555)
Q Consensus 119 k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl 163 (555)
.|+-||+--.|+|.|||..|.-|.-||.=.++.. =-++..||+
T Consensus 2 ~n~~l~~lvkl~~~lar~t~apl~rrvpKRgF~s--r~~~~~VnL 44 (121)
T 3jyw_O 2 DNVYLKLLVKLYTFLARRTDAPFNKVVLKALFLS--KINRPPVSV 44 (121)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCHHHHHHHHTTTSC--STTSCCBCH
T ss_pred CCHHHHHHHHHHHHHHhhcCChHHHHHHHHHCCC--CCccceEEH
Confidence 3678899999999999999999999999665553 346666665
No 4
>3j21_P 50S ribosomal protein L18E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=12.49 E-value=1.5e+02 Score=26.06 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=34.9
Q ss_pred cchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508 118 CKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI 163 (555)
Q Consensus 118 ~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl 163 (555)
..|+-||.--.+||.+||..|+-|--||.=.++.. --+...|||
T Consensus 6 ~~n~~l~~li~~~~~~~r~~~~Pl~rrlpKrgF~~--r~~~~~VnL 49 (120)
T 3j21_P 6 PTDPNLRRLIRYLRKKSNEYGVKIWKDVAWRLERP--RRQRAEVNV 49 (120)
T ss_dssp CCCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHSC--TTSSEEEEH
T ss_pred CCCHHHHHHHHHHHHHHhccCCcHHHHHHhhcCCC--CCcceeEEH
Confidence 55788999999999999999999999999777663 334444554
No 5
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=11.96 E-value=1.2e+02 Score=22.96 Aligned_cols=31 Identities=19% Similarity=0.485 Sum_probs=21.2
Q ss_pred hHHHHHHhHhhhhhhhhhhhcccccccchhHHHHHHHHHHhhhc
Q psy10508 92 LDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCNDLLRRLSR 135 (555)
Q Consensus 92 I~~C~~iF~~lEsr~~~~~~~~~~~~~k~~lLR~CN~LLRRLSr 135 (555)
|+-=+.+|.|+-|+...+.. +.++.||||=.
T Consensus 4 IEvDdelY~YIas~t~~igE-------------saSdiLRRll~ 34 (50)
T 1xrx_A 4 IEVDDELYSYIASHTKHIGE-------------SASDILRRMLK 34 (50)
T ss_dssp EEECHHHHHHHHTTCSSTTC-------------CHHHHHHHHHT
T ss_pred eeecHHHHHHHHHhchhhcc-------------CHHHHHHHHHc
Confidence 44446889998888666544 35788888744
No 6
>3iz5_R 60S ribosomal protein L18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_R
Probab=11.67 E-value=1.8e+02 Score=27.70 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCcccccc
Q psy10508 118 CKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNII 164 (555)
Q Consensus 118 ~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNlr 164 (555)
..|+.||+.-.|||.|||..|.-|.-+|+=.|+. |=.++-.|||.
T Consensus 21 stN~yL~~Liklyr~larrt~apf~r~V~KRLf~--sr~~r~pVnLs 65 (188)
T 3iz5_R 21 SDDVYLKLLVKLYRFLVRRTKSKFNAVILKRLFM--SKTNRPPLSMR 65 (188)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHS--CTTTCCEEEHH
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHcC--CccccCcccHH
Confidence 4468999999999999999999999999976666 33466666653
No 7
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=11.67 E-value=6.4e+02 Score=20.91 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhhcccccccchHHHHHhhhcccChHHHHHHhHhhhhhh
Q psy10508 34 SALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNV 106 (555)
Q Consensus 34 ~~~e~A~R~~l~~l~~~~~id~~~l~~ll~l~~~~~~~~~c~~~lpf~LleDl~d~~TI~~C~~iF~~lEsr~ 106 (555)
..+..=+.+.+.+++.. +. ..++++++.+.+++ .+|.-...=|+.++|.-+..-|.++|..|.+-.
T Consensus 16 ~~lkpWI~kkv~e~LG~---eD---~~lVd~i~~~l~~~-~dpk~l~~~L~~fLd~~a~~Fv~eLW~lL~~aq 81 (92)
T 1x4q_A 16 DELKPWIEKTVKRVLGF---SE---PTVVTAALNCVGKG-MDKKKAADHLKPFLDDSTLRFVDKLFEAVEEGR 81 (92)
T ss_dssp HHHHHHHHHHHHHHHSS---CC---HHHHHHHHHHHHTT-CCHHHHHHHHTTTTGGGTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCC---Cc---HHHHHHHHHHHHcC-CCHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34444556677777764 22 34677888888854 466666677777888889999999999886543
No 8
>3izc_R 60S ribosomal protein RPL18 (L18E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_R 3o58_R 3o5h_R 3u5e_Q 3u5i_Q 4b6a_Q
Probab=10.83 E-value=1.8e+02 Score=27.76 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=35.9
Q ss_pred cchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508 118 CKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI 163 (555)
Q Consensus 118 ~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl 163 (555)
..|+.||+.-.|||.|||..|.-|.-+|+=.|+. |=-++-.|||
T Consensus 21 stN~yL~~Lvklyr~larrt~apf~r~V~KRLf~--sr~~r~~VnL 64 (186)
T 3izc_R 21 SDNVYLKLLVKLYTFLARRTDAPFNKVVLKALFL--SKINRPPVSV 64 (186)
T ss_dssp CSSHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHS--CTTTCCEEEH
T ss_pred CCCHHHHHHHHHHHHHHhhhCChHHHHHHHHHhC--CCcccCcccH
Confidence 3468999999999999999999999999976666 4446666765
No 9
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=10.62 E-value=2.8e+02 Score=24.19 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=12.9
Q ss_pred CCCchhHHHHHHHHHhc
Q psy10508 331 PPDGEHFSQVVKLILKG 347 (555)
Q Consensus 331 ~p~G~~F~~~V~~IL~R 347 (555)
+|-++.|..++++++.+
T Consensus 43 ~Pt~kdF~~if~fL~~~ 59 (120)
T 2igp_A 43 APSVKDFLKIFTFLYGF 59 (120)
T ss_dssp SCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 36677888888888865
No 10
>4a17_N RPL18, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_N 4a1c_N 4a1e_N
Probab=10.39 E-value=1.5e+02 Score=28.08 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=35.4
Q ss_pred cchhHHHHHHHHHHhhhccCCcchhhHHHHHHhhhcCCCCCccccc
Q psy10508 118 CKNNLLRMCNDLLRRLSRSQNTVFCGRILLFLAKFFPFSERSGLNI 163 (555)
Q Consensus 118 ~k~~lLR~CN~LLRRLSrs~dtvFCGRIliFLs~~FPLsErSgvNl 163 (555)
..|+.||+--.|||.|||..|.-|.-+|+=.|+. |=-++-.|||
T Consensus 22 stN~yL~~Lvklyr~larrt~apf~r~V~KRLf~--sr~nr~pVnL 65 (181)
T 4a17_N 22 STNVYHKLLIKLYKFLVRRTDSKFNQNILKRLSS--SRLNKFPLSL 65 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHSC--CGGGSCCEEH
T ss_pred CCCHHHHHHHHHHHHHHhhcCChHHHHHHHHHcC--CccccCcccH
Confidence 3468999999999999999999999999976665 3335566665
Done!