RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10508
(555 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 4e-11
Identities = 88/552 (15%), Positives = 151/552 (27%), Gaps = 167/552 (30%)
Query: 2 LDSFQLNFDKSQLNVVSD--KYALYKPTCD--YDKKSALEQSIRQYLLKLIKTPDIDIKV 57
D+F NFD V D K L K D K A+ + L
Sbjct: 26 EDAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGT---LRL---------FWT 70
Query: 58 IENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMS 117
+ + V+ ++++ L Y+E ++ F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA- 127
Query: 118 CKNNLLR--MCNDL---LRRLSRSQNTVF-----CGRILLFL--AKFFPFSERSGLNIIS 165
K N+ R L L L ++N + G+ + L + + I
Sbjct: 128 -KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI-- 184
Query: 166 EF--NVENITEFGGDEEM------DVSSNETEETDTEEVDKVKIDFNFYKKFWSLQDYFR 217
F N++N EM + N T +D K++I S+Q R
Sbjct: 185 -FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH--------SIQAELR 235
Query: 218 NPVQCYNKVSWKMFTSYAETVLAAFKSYK-----LDDVQSS--LNPSGDYFA---KYL-- 265
L K Y+ L +VQ++ + F K L
Sbjct: 236 R--------------------LLKSKPYENCLLVLLNVQNAKAW----NAFNLSCKILLT 271
Query: 266 TNQKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYS 325
T K + LS L + + E L K++ + +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLL---KYLDCRPQDLPR 320
Query: 326 LIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRP----LTSITDEDKKD----- 376
+ T P S + + I G W+ WK+ C +L L + + +
Sbjct: 321 EVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 377 ---EPDAKKKKTPE--LTKLWNSKDN------LEAC--KS-AERDFTPSLES----YFEE 418
P A P L+ +W + S E+ S S Y E
Sbjct: 379 SVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 419 AIQQMDPAA---AVEEQYK-----------KVNDSNYAWRALRLLSRKCPHFF------L 458
++ + A ++ + Y Y F+ L
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY--------------FYSHIGHHL 481
Query: 459 NATPNVEKNSEF 470
+ E+ + F
Sbjct: 482 KNIEHPERMTLF 493
Score = 44.5 bits (104), Expect = 9e-05
Identities = 65/464 (14%), Positives = 140/464 (30%), Gaps = 116/464 (25%)
Query: 1 MLDSFQLNFDKSQLNVVSDKYALYKPTCD-YDKKSALEQSIRQY---LLKL--IKTPDI- 53
ML D + + + + L +S + Y LL L ++
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAW 259
Query: 54 ---DIK----VIENYISLCVELCMKDMCNSTLPIILLSDTFDMSTLDKCEQLFY-YVEVN 105
++ + + + L + + + S T T D+ + L Y++
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTL---TPDEVKSLLLKYLDCR 314
Query: 106 VNIWKQQTFFMSCKNN--LLRMCNDLLR-RLSRSQN--TVFCGR----ILLFLAKFFPFS 156
++ N L + + +R L+ N V C + I L P
Sbjct: 315 PQDLPREV----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 157 ERS---GLNIISEFNVENITEFGGDEEM-----DVSSNETEETDTEEVDKVKIDFNFYKK 208
R L++ + +I + DV ++ + ++ +
Sbjct: 371 YRKMFDRLSVFPP-SA-HIPT----ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 209 FWSLQD-YFRNPVQCYNKVSW--KMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYL 265
S+ Y V+ N+ + + Y K++ DD+ YF ++
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIP-----KTFDSDDL--IPPYLDQYFYSHI 477
Query: 266 T-NQKLLDLQLSDTNFRR-YVLLQFL---ILFQYFTSTVKSRGEGLELKSDQEKWVKDTT 320
+ K ++ T FR ++ +FL I ++ ++ + G L +
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKF------ 529
Query: 321 ETVYSLIKQTPPDGEHFSQVVKLILKGEEHWNQWKNEGCPELKRPLTSITDEDKKDEPDA 380
Y + + P+ +R + +I D K E +
Sbjct: 530 ---YK---------PYIC------------------DNDPKYERLVNAILDFLPKIEENL 559
Query: 381 KKKKTPELTKLWNSKDNLEACKSAERDFTPSLESYFEEAIQQMD 424
K +L ++ ++ E+ FEEA +Q+
Sbjct: 560 ICSKYTDLLRIALMAED---------------EAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.010
Identities = 44/313 (14%), Positives = 83/313 (26%), Gaps = 109/313 (34%)
Query: 211 SLQDYFRNPVQCYNKVS--WKMFTSYAETVLAAFKSYKLDDVQSSLNPSGDYFAKYLTNQ 268
SL+ P + S + F F + DD ++ + K+L
Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA---DDEPTT---PAELVGKFL--- 65
Query: 269 KLLDLQLSDTNFRRY--VLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSL 326
+ + + ++ VL + F + L+ D +++L
Sbjct: 66 GYVSSLVEPSKVGQFDQVLN---LCLTEFENCY--------LEG------ND----IHAL 104
Query: 327 IKQTPPDGEHFSQVVKLILKGEEHWNQWKN--EGCPELKRPLTSITDEDKKDEPDAKKKK 384
+ + + K ++K N KRP KK
Sbjct: 105 AAKLLQENDTTLVKTKELIK---------NYITARIMAKRPFD--------------KKS 141
Query: 385 TPELTKLWNSKDNLEACKSAERDFTP------SLESYFEE--------------AIQQMD 424
L A + + YFEE I+
Sbjct: 142 NSAL---------FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS- 191
Query: 425 PAAAVEEQYKKVNDSNYAW-RALRLLSRKCPHFFLNATPNVEKNSEFIENMVKRCVKEKP 483
A + E + D+ + + L +L +L P+ + +++
Sbjct: 192 -AETLSELIRTTLDAEKVFTQGLNILE------WLE-NPSNTPDKDYLL----------- 232
Query: 484 SSQISGNGNGVDQ 496
S IS GV Q
Sbjct: 233 SIPISCPLIGVIQ 245
Score = 34.3 bits (78), Expect = 0.15
Identities = 41/253 (16%), Positives = 64/253 (25%), Gaps = 115/253 (45%)
Query: 21 YALYKP-----------------TCDYDKKSALEQS--IRQYLLKLIKTPDID------- 54
Y Y D + Q I ++L TPD D
Sbjct: 177 YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI 236
Query: 55 ----IKVIE--NYISLCVEL----------------CMKDMCNSTLPIILLSDT---FDM 89
I VI+ +Y+ L + + + I +D+ F +
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV--AIAETDSWESFFV 294
Query: 90 STLDKCEQLFYY-VEVNVNIWKQQTF----------------------FM-SCKN----- 120
S LF+ V + + M S N
Sbjct: 295 SVRKAITVLFFIGVRC------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 121 --NLLRMCNDLL---RRLSRS-----QNTVFCG------RILLFLAKFF----------P 154
+ + N L +++ S +N V G + L L K P
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 155 FSERSGLNIISEF 167
FSER L + F
Sbjct: 409 FSER-KLKFSNRF 420
>1yye_A ER-beta, estrogen receptor beta; ER-beta, nuclear receptor,
transcription factor, agonist; HET: 196; 2.03A {Homo
sapiens} SCOP: a.123.1.1 PDB: 1yy4_A*
Length = 268
Score = 34.9 bits (80), Expect = 0.058
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 268 QKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLI 327
+ +L+L Y+ ++ +IL + + + + + T+ + +I
Sbjct: 123 SRFRELKLQHK---EYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVI 179
Query: 328 KQT----PPDGEHFSQVVKLI-------LKGEEHWNQWKNEG 358
++ + ++ L+ KG EH K +
Sbjct: 180 AKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 221
>1l2j_A Estrogen receptor beta; nuclear receptor, transcription factor,
antagonist transcription receptor; HET: ETC; 2.95A {Homo
sapiens} SCOP: a.123.1.1
Length = 271
Score = 33.8 bits (77), Expect = 0.10
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 268 QKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLI 327
+ +L+L Y+ ++ +IL + + + + + T+ + +I
Sbjct: 151 SRFRELKLQHKE---YLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVI 207
Query: 328 KQT----PPDGEHFSQVVKLI-------LKGEEHWNQWKNEG 358
++ + ++ L+ KG EH K +
Sbjct: 208 AKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 249
>3oll_A Estrogen receptor beta; steroid binding, phosphorylation, hormone
receptor-activator; HET: PTR EST; 1.50A {Homo sapiens}
PDB: 1u3s_A* 1u3q_A* 1x78_A* 1x7b_A* 1x7j_A* 1x76_A*
2yjd_A* 3ols_A* 3omo_A* 3omp_A* 3omq_A* 1u3r_A* 1u9e_A*
1qkm_A* 2giu_A* 1nde_A* 2jj3_A* 2i0g_A* 2qtu_A* 2z4b_A*
...
Length = 240
Score = 32.8 bits (75), Expect = 0.20
Identities = 13/102 (12%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 268 QKLLDLQLSDTNFRRYVLLQFLILFQYFTSTVKSRGEGLELKSDQEKWVKDTTETVYSLI 327
+ +L+L Y+ ++ +IL + + + + + T+ + +I
Sbjct: 125 SRFRELKLQHK---EYLCVKAMILLNSSMYPLVTATQDADSSRKLAHLLNAVTDALVWVI 181
Query: 328 KQT----PPDGEHFSQVVKLI-------LKGEEHWNQWKNEG 358
++ + ++ L+ KG EH K +
Sbjct: 182 AKSGISSQQQSMRLANLLMLLSHVRHASNKGMEHLLNMKCKN 223
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.33
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 13/33 (39%)
Query: 32 KKSALEQSIRQYLLKLIKTPD----IDIKV-IE 59
KK L+ S++ Y D + IK +E
Sbjct: 23 KK--LQASLKLY------ADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 2.6
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 10 DKSQLNVVSDKYALYKPTCDYDKKSALEQSIR 41
+K L + LY D AL +I+
Sbjct: 18 EKQALKKLQASLKLYAD----DSAPAL--AIK 43
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 3.0
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 23/63 (36%)
Query: 494 VDQDPAEVEVDTK-----SEEIQE-----EEKEEDWEAKADPEGDADEVMSVEYCYQRNW 543
D+ E E K + +QE + E++W KA + + W
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLE-------------EW 123
Query: 544 HKQ 546
+++
Sbjct: 124 NQR 126
Score = 28.6 bits (63), Expect = 4.3
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 32/97 (32%)
Query: 348 EEHWNQWKNEGCPELKRPLTSITDEDKKDEPDAKKKKTPELTKLWNSKDNLEACKSAERD 407
E +W+ E L+ + D ++ E + A++D
Sbjct: 84 PESIRKWREEQRKRLQ----------ELDAASKVMEQ--------------EWREKAKKD 119
Query: 408 FTPSLESYFEEAIQQMDPAAA----VEEQYKKVNDSN 440
LE + + +Q++ ++ + + D++
Sbjct: 120 ----LEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 28.7 bits (64), Expect = 7.1
Identities = 4/43 (9%), Positives = 12/43 (27%)
Query: 187 ETEETDTEEVDKVKIDFNFYKKFWSLQDYFRNPVQCYNKVSWK 229
+ ++ V+ + K W + + +W
Sbjct: 15 KDDDDKGGGKVPVEEEIQDLKAVWVELSNTWQEIDSLKETAWS 57
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural
genomics, SEA structural genomics center for infectious
disease; HET: LLP; 2.30A {Trypanosoma brucei}
Length = 409
Score = 28.0 bits (63), Expect = 9.8
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 317 KDTTETVYSLIKQT-------PPDGEHFSQVVKLILKGEEHWNQWKNE 357
+ + + S + PP + + VV ILK + WK E
Sbjct: 277 AEEAKRLVSQLALLIRPMYNNPPL--YGAWVVSSILKDPQLTALWKKE 322
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 28.0 bits (63), Expect = 9.9
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 317 KDTTETVYSLIKQT-------PPDGEHFSQVVKLILKGEEHWNQWKNE 357
++ + V++ + P H ++++ +L + W E
Sbjct: 268 QEEKKIVFNNLCFIVRKFYSSPVI--HTNRILCQLLNNQNLKLNWIKE 313
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.390
Gapped
Lambda K H
0.267 0.0774 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,310,047
Number of extensions: 483970
Number of successful extensions: 1023
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1002
Number of HSP's successfully gapped: 30
Length of query: 555
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 457
Effective length of database: 3,965,535
Effective search space: 1812249495
Effective search space used: 1812249495
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)