RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10508
         (555 letters)



>d1ju2a2 d.16.1.1 (A:294-463) Hydroxynitrile lyase {Almond (Prunus
           dulcis) [TaxId: 3755]}
          Length = 170

 Score = 27.4 bits (60), Expect = 3.1
 Identities = 7/86 (8%), Positives = 21/86 (24%), Gaps = 15/86 (17%)

Query: 254 LNPSGDYFAKYLTNQKLLDLQLSDTNFRRYVLLQFLIL----FQYFTSTVKSRGEGLELK 309
           L  S +                  ++    +     +L     + +        EG  + 
Sbjct: 80  LKSSSNVRVSPNVKFNYYSNLTDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNIL 139

Query: 310 ---------SDQ--EKWVKDTTETVY 324
                     D   E + +++  + +
Sbjct: 140 GIPLPKDQTDDAAFETFCRESVASYW 165


>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
           thermophilus [TaxId: 274]}
          Length = 343

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 12/95 (12%)

Query: 351 WNQWKNEGCPELKRPLTSITDED-----KKDEPDAKKKKTPELTKLWNSKDNLEACKSAE 405
             +  +   P   R LT + +E+     K     A +     LT  +      +     +
Sbjct: 250 LMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALP---QIPPRID 306

Query: 406 RDFTPSLESYFEEAIQQMDPAAA----VEEQYKKV 436
           R F  SL   +E   +  +         E +Y +V
Sbjct: 307 RAFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEV 341


>d1m8za_ a.118.1.8 (A:) Pumilio 1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 339

 Score = 26.7 bits (58), Expect = 7.1
 Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 28  CDYDKKSALEQSIRQYLLKLIKTPDIDIKVIENYISLCVELCMKDMCNSTLPII--LLSD 85
           C  D+   + + + Q+  +L++    +  VI++ +          +       +  L   
Sbjct: 190 CLPDQTLPILEELHQHTEQLVQDQYGN-YVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQH 248

Query: 86  TFDMSTLDKCEQLFYYVEVNVNIWKQQTFFMSCKNNLLRMCND 128
            F  + ++KC       E  V I +  T      + L  M  D
Sbjct: 249 KFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKD 291


>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding
           (Amaranthus caudatus) [TaxId: 3567]}
          Length = 153

 Score = 26.0 bits (57), Expect = 7.4
 Identities = 7/37 (18%), Positives = 13/37 (35%)

Query: 174 EFGGDEEMDVSSNETEETDTEEVDKVKIDFNFYKKFW 210
           +F  D+ +D  +    E        V I   +  K+ 
Sbjct: 32  QFSADKILDPLAQFEVEPSKTYDGLVHIKSRYTNKYL 68


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.390 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,085,654
Number of extensions: 99210
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 237
Number of HSP's successfully gapped: 8
Length of query: 555
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 465
Effective length of database: 1,171,896
Effective search space: 544931640
Effective search space used: 544931640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.7 bits)