BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10509
(847 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 102/166 (61%), Gaps = 5/166 (3%)
Query: 480 KPLPQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSN 538
KPLP++ EDF+ +S GV+ F++G+ V N T +R + + + Q ++W+ D N
Sbjct: 5 KPLPKEXEDFVQSSGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFD-GN 61
Query: 539 FQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQN 598
+TL N ++ KW PQND+L HPK FITHGG + + E++YHG+P VGIP+FADQ N
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
Query: 599 LLALQEKGMGEMVEFN-FEYEDLKRKLDKVLNENSYRQKIAKFSAI 643
+ + +G V+FN DL L +V+N+ SY++ + K S I
Sbjct: 122 IAHXKARGAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRI 167
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 191 KPLPQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSN 249
KPLP++ EDF+ +S GV+ F++G+ V N T +R + + + Q ++W+ D N
Sbjct: 5 KPLPKEXEDFVQSSGENGVVVFSLGSXV--SNXTEERANVIASALAQIPQKVLWRFD-GN 61
Query: 250 FQETLPPNVKVGKWFPQNDILA 271
+TL N ++ KW PQND+L
Sbjct: 62 KPDTLGLNTRLYKWIPQNDLLG 83
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 4/106 (3%)
Query: 534 IDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFA 593
+DP++ E +PPNV+V +W PQ DIL K FITH G+ S +E+L + VPMV +P A
Sbjct: 295 VDPADLGE-VPPNVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIA 351
Query: 594 DQAQNLLALQEKGMGEMVEFN-FEYEDLKRKLDKVLNENSYRQKIA 638
+Q N + E G+G + + E L+ + V ++ +++A
Sbjct: 352 EQTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLA 397
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 245 IDPSNFQETLPPNVKVGKWFPQNDIL 270
+DP++ E +PPNV+V +W PQ DIL
Sbjct: 295 VDPADLGE-VPPNVEVHQWVPQLDIL 319
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 15/150 (10%)
Query: 491 NASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDP-----------SNF 539
+ P V+Y G+ +TP++ + K+ +W I P S F
Sbjct: 291 SKEPGSVVYVNFGSTT---VMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEF 347
Query: 540 QETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNL 599
+ + W PQ+ +L HP F+TH G +S ES+ GVPM+ P FADQ +
Sbjct: 348 TNEIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDC 407
Query: 600 -LALQEKGMGEMVEFNFEYEDLKRKLDKVL 628
E +G ++ N + E+L + +++V+
Sbjct: 408 RFICNEWEIGMEIDTNVKREELAKLINEVI 437
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 536 PSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ 595
P F E K+ W PQ +IL H +F+TH G +SVLE + GVPM+ P F DQ
Sbjct: 318 PKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQ 377
Query: 596 AQNLL---ALQEKGMGEMVEFNFEYEDLKRKLDKVLNENS---YRQKIAKF 640
N + ++ E G+G + E +K+ L+ ++ RQKI K
Sbjct: 378 GLNTILTESVLEIGVG-VDNGVLTKESIKKALELTMSSEKGGIMRQKIVKL 427
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 533 KIDPSNFQETLPPNVK--VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIP 590
K+ P F E + K + W PQ ++LAH F++H G +S+LES++ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 591 VFADQAQNLLALQEK---GMGEMVEFN-----FEYEDLKRKLDKVLNENS-YRQKIAKFS 641
++A+Q N L ++ G+G V++ E++++ L +++++S +K+ +
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 642 AIYRSEVTD 650
+ R+ V D
Sbjct: 438 EMSRNAVVD 446
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 71/129 (55%), Gaps = 11/129 (8%)
Query: 533 KIDPSNFQETLPPNVK--VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIP 590
K+ P F E + K + W PQ ++LAH F++H G +S+LES++ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 591 VFADQAQNLLALQEK---GMGEMVEFN-----FEYEDLKRKLDKVLNENS-YRQKIAKFS 641
++A+Q N L ++ G+G V++ E++++ L +++++S +K+ +
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 642 AIYRSEVTD 650
+ R+ V D
Sbjct: 438 EMSRNAVVD 446
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 23/127 (18%)
Query: 552 WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMV 611
W PQ +LAHP F+TH G +S LES+ G+P++ P++A+Q N + L
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS-------- 397
Query: 612 EFNFEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHHL 671
ED++ L R + + R EV +V+ M E N L
Sbjct: 398 ------EDIRAAL---------RPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKEL 442
Query: 672 RTASTRL 678
+ A+ R+
Sbjct: 443 KEAACRV 449
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 67/179 (37%), Gaps = 9/179 (5%)
Query: 494 PAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQW-----IIWKIDPSNFQETLPPNVK 548
PAG + + P ++ F L W I K+ P+ E LP NV+
Sbjct: 228 PAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGE-LPDNVE 286
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMG 608
V W PQ IL + LF+TH G E L PM+ +P DQ N LQ G+
Sbjct: 287 VHDWVPQLAILR--QADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVA 344
Query: 609 EMVEFNFEYEDLKRKLDKVL-NENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHN 666
+ DL R+ L ++ +++ + A E + E RH
Sbjct: 345 RKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEAELPARHE 403
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 494 PAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKID-------PSNFQETLPPN 546
P V+Y + GT P L + + IW + P F E
Sbjct: 270 PTSVVYISFGTVT---TPPPAEVVALSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGY 326
Query: 547 VKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEK- 605
V W PQ ++LAH F+TH G +S+ ES+ GVP++ P F DQ N +++
Sbjct: 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVL 386
Query: 606 GMGEMVEFN-FEYEDLKRKLDKVLNENSYRQ 635
+G +E F L D++L++ ++
Sbjct: 387 EIGVRIEGGVFTKSGLMSCFDQILSQEKGKK 417
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 543 LPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQ-NLLA 601
LPPNV+ +W P + +LAH + L THG +VLE+ GVP+V +P FA +A +
Sbjct: 279 LPPNVEAHQWIPFHSVLAHARACL--THGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336
Query: 602 LQEKGMGEMVEFN-FEYEDLKRKLDKVLNENS 632
+ E G+G ++ + E ++ ++++ +++
Sbjct: 337 VIELGLGSVLRPDQLEPASIREAVERLAADSA 368
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 533 KIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVF 592
++DP+ + LPPNV+ +W P +L + + +THGG ++ E+LY G P+V +P
Sbjct: 286 QVDPAALGD-LPPNVEAHRWVPHVKVLE--QATVCVTHGGXGTLXEALYWGRPLVVVPQS 342
Query: 593 ADQAQNLLALQEKGMGEMV 611
D + + G+G ++
Sbjct: 343 FDVQPXARRVDQLGLGAVL 361
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 533 KIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVF 592
++DP+ + LPPNV+ +W P +L + + +THGG ++ E+LY G P+V +P
Sbjct: 286 QVDPAALGD-LPPNVEAHRWVPHVKVLE--QATVCVTHGGXGTLXEALYWGRPLVVVPQS 342
Query: 593 ADQAQNLLALQEKGMGEMV 611
D + + G+G ++
Sbjct: 343 FDVQPXARRVDQLGLGAVL 361
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 544 PPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQ 603
P NV+V +W P +L C I HGG ++L +L GVP IP + Q N L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 604 EKGMGEMVEF-NFEYEDLKRKLDKV-LNENSYRQK 636
G+G E + E +R LD L E + R +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVR 379
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 544 PPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQ 603
P NV+V +W P +L C I HGG ++L +L GVP IP + Q N L
Sbjct: 287 PANVRVVEWIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLT 344
Query: 604 EKGMGEMVEF-NFEYEDLKRKLDKV-LNENSYRQK 636
G+G E + E +R LD L E + R +
Sbjct: 345 GLGIGFDAEAGSLGAEQCRRLLDDAGLREAALRVR 379
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 541 ETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLL 600
+ LP V FP + I P C + + HGG + L L GVP V +PV A+ +
Sbjct: 279 QPLPEGVLAAGQFPLSAIX--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 336
Query: 601 ALQEKGMGEMVEFNFE---YEDLKRKLDKVLNENSYRQKIAKFSA 642
L G G VE +E E + ++ +++SY + +A
Sbjct: 337 LLHAAGAG--VEVPWEQAGVESVLAACARIRDDSSYVGNARRLAA 379
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 7/105 (6%)
Query: 541 ETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLL 600
+ LP V FP + I P C + + HGG + L L GVP V +PV A+ +
Sbjct: 280 QPLPEGVLAAGQFPLSAI--XPACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSAR 337
Query: 601 ALQEKGMGEMVEFNFE---YEDLKRKLDKVLNENSYRQKIAKFSA 642
L G G VE +E E + ++ +++SY + +A
Sbjct: 338 LLHAAGAG--VEVPWEQAGVESVLAACARIRDDSSYVGNARRLAA 380
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 518 NLLKLFSGLKQWIIWKIDPSNFQ--ETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHS 575
LL + II D + +P NV+ + P + +L P C + HGG S
Sbjct: 290 ELLGAVGDVDAEIIATFDAQQLEGVANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGS 347
Query: 576 VLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEF-NFEYEDLKRKLDKVLNENSYR 634
+ HGVP V +P D QE G G + + L+ + +VL++ ++R
Sbjct: 348 WHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHR 407
Query: 635 QKIAKF 640
A+
Sbjct: 408 AGAARM 413
>pdb|3D0R|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3D0R|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group P2(1)
pdb|3OTI|A Chain A, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
pdb|3OTI|B Chain B, Crystal Structure Of Calg3, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin T0 Bound
Form
Length = 398
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 542 TLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLL- 600
TLP NV+ W P + +L C + HGG +V+ ++ G+P + P DQ Q+
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 601 -ALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYR 634
A+ +G+G + + DL R+L + + S R
Sbjct: 338 EAVSRRGIGLVSTSDKVDADLLRRL---IGDESLR 369
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 497 VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPS---NFQETLPPNVKVGKWF 553
++Y +GT G + R A + +GL ++ PS + +P NV++ W
Sbjct: 244 LVYLTLGT-SSGGTVEVLRAA--IDGLAGLDADVLVASGPSLDVSGLGEVPANVRLESWV 300
Query: 554 PQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ-AQNLLALQEKGMGEMVE 612
PQ +L H L + HGG + L +L GVP + P D A Q ++
Sbjct: 301 PQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLP 358
Query: 613 FNFEYEDLKRKLDKVLNENSYR 634
N + + ++L E SYR
Sbjct: 359 DNISPDSVSGAAKRLLAEESYR 380
>pdb|3D0Q|A Chain A, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
pdb|3D0Q|B Chain B, Crystal Structure Of Calg3 From Micromonospora Echinospora
Determined In Space Group I222
Length = 398
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 542 TLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLL- 600
TLP NV+ W P + +L C + HGG +V ++ G+P + P DQ Q+
Sbjct: 280 TLPRNVRAVGWTPLHTLLR--TCTAVVHHGGGGTVXTAIDAGIPQLLAPDPRDQFQHTAR 337
Query: 601 -ALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYR 634
A+ +G+G + + DL R+L + + S R
Sbjct: 338 EAVSRRGIGLVSTSDKVDADLLRRL---IGDESLR 369
>pdb|3EHN|A Chain A, Bt1043 With N-Acetyllactosamine
pdb|3EHN|B Chain B, Bt1043 With N-Acetyllactosamine
Length = 532
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 347 AALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSLLTA 406
+++ KF + Y+ +L + L N + + MA Y L Y GN+ W +L NSL+
Sbjct: 151 GSIAPKFDSQEVVYRSMLADLSKSVELLNTISYSVMAQYDLIYNGNVQNWVKLANSLM-- 208
Query: 407 YEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALTLVD 453
+ ++R HF K YI L +N + D
Sbjct: 209 -------------LRIVVRVHFIDETLAK-EYITKALDPKNGGVIED 241
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 58 AALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSLL 115
+++ KF + Y+ +L + L N + + MA Y L Y GN+ W +L NSL+
Sbjct: 151 GSIAPKFDSQEVVYRSMLADLSKSVELLNTISYSVMAQYDLIYNGNVQNWVKLANSLM 208
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 527 KQWIIWKID-----PSNFQETLP---PNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLE 578
K + W ++ P E L P +VG W P D++A P C L + H G S L
Sbjct: 238 KDLVRWDVELIVAAPDTVAEALRAEVPQARVG-WTPL-DVVA-PTCDLLVHHAGGVSTLT 294
Query: 579 SLYHGVPMVGIP 590
L GVP + IP
Sbjct: 295 GLSAGVPQLLIP 306
>pdb|3TSA|A Chain A, Spinosyn Rhamnosyltransferase Spng
pdb|3TSA|B Chain B, Spinosyn Rhamnosyltransferase Spng
Length = 391
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 543 LPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ---AQNL 599
LP N ++ + P N L C L I GG + + G+P + +P + DQ A+NL
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 600 LALQEKGMGEMV---EFNFEYEDLKRKLDKVLNENSYRQKIAKFS 641
A G G + + ++E + VL + + K S
Sbjct: 326 AA---AGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLS 367
>pdb|3UYK|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYK|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With Spinosyn
Aglycone
pdb|3UYL|A Chain A, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
pdb|3UYL|B Chain B, Spinosyn Rhamnosyltransferase Spng Complexed With
Thymidine Diphosphate
Length = 387
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 543 LPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ---AQNL 599
LP N ++ + P N L C L I GG + + G+P + +P + DQ A+NL
Sbjct: 268 LPDNARIAESVPLNLFLR--TCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNL 325
Query: 600 LALQEKGMGEMV---EFNFEYEDLKRKLDKVLNENSYRQKIAKFS 641
A G G + + ++E + VL + + K S
Sbjct: 326 AA---AGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLS 367
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,082,183
Number of Sequences: 62578
Number of extensions: 1136864
Number of successful extensions: 2666
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2618
Number of HSP's gapped (non-prelim): 46
length of query: 847
length of database: 14,973,337
effective HSP length: 107
effective length of query: 740
effective length of database: 8,277,491
effective search space: 6125343340
effective search space used: 6125343340
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)