RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10509
(847 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 205 bits (523), Expect = 1e-57
Identities = 99/239 (41%), Positives = 144/239 (60%), Gaps = 21/239 (8%)
Query: 461 PKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANL 519
P+P PN+ IGG++ P KPLPQ++E F+ +S GV+ F++G+ V P+ KAN
Sbjct: 241 PRPLLPNMEFIGGLNCKPAKPLPQEMEAFVQSSGEHGVVVFSLGSMVSN---IPEEKANE 297
Query: 520 LKLFSGLK---QWIIWKID---PSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGI 573
+ S L Q ++W+ D PS L N ++ KW PQND+L HPK F+TH G
Sbjct: 298 IA--SALAQIPQKVLWRFDGTKPST----LGRNTRLVKWLPQNDLLGHPKTRAFVTHAGS 351
Query: 574 HSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFNF---EYEDLKRKLDKVLNE 630
+ V E++ HGVPMVG+P+F DQ N ++ KG V N EDL L V+N+
Sbjct: 352 NGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAA--VTLNVLTMTSEDLLNALKTVIND 409
Query: 631 NSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHHLRTASTRLTWYQYLNLDVL 689
SY++ I + S+I+ + ++R +F+IE+V+RH GA HLR A+ LTWYQY +LDV+
Sbjct: 410 PSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAHDLTWYQYHSLDVI 468
Score = 80.1 bits (198), Expect = 2e-15
Identities = 41/106 (38%), Positives = 61/106 (57%), Gaps = 16/106 (15%)
Query: 172 PKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANL 230
P+P PN+ IGG++ P KPLPQ++E F+ +S GV+ F++G+ V P+ KAN
Sbjct: 241 PRPLLPNMEFIGGLNCKPAKPLPQEMEAFVQSSGEHGVVVFSLGSMVSN---IPEEKANE 297
Query: 231 LKLFSGLK---QWIIWKID---PSNFQETLPPNVKVGKWFPQNDIL 270
+ S L Q ++W+ D PS L N ++ KW PQND+L
Sbjct: 298 IA--SALAQIPQKVLWRFDGTKPST----LGRNTRLVKWLPQNDLL 337
Score = 60.5 bits (147), Expect = 2e-09
Identities = 26/57 (45%), Positives = 41/57 (71%)
Query: 714 YRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHHLRTASTRLTWYQYLNLDVL 770
Y++ I + S+I+ + ++R +F+IE+V+RH GA HLR A+ LTWYQY +LDV+
Sbjct: 412 YKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPAAHDLTWYQYHSLDVI 468
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 157 bits (400), Expect = 5e-41
Identities = 87/306 (28%), Positives = 148/306 (48%), Gaps = 14/306 (4%)
Query: 391 GNMTFWQRLINSLLTAYEI-LYQNFIYLPRI-DTIMRTHFAKVGAVKWPYIKDILRARNA 448
GN+ W+ IN + T E+ LY F L + +++ F P I+ LR R
Sbjct: 196 GNLNVWE-TINEIYT--ELRLYNEFSLLADEQNKLLKQQFGP----DTPTIR-ELRNRVQ 247
Query: 449 LTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQD--IEDFINASPAGVIYFAMGTFV 506
L V+ H + + +P P+V +GG+H+ P P D +E+F+N S GV+Y + G+ +
Sbjct: 248 LLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSI 307
Query: 507 DGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVL 566
D ++ + LL+ F L ++WK D LP NV KWFPQ +L H
Sbjct: 308 DTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKA 367
Query: 567 FITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVE-FNFEYEDLKRKLD 625
F+T GG+ S E++ VPMVG+P+ DQ N E G+G ++ L +
Sbjct: 368 FVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIV 427
Query: 626 KVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNG-AHHLRTASTRLTWYQYL 684
V+ YR+ + + + R + + + ++Y E+V+R+ L+T + +++ Y
Sbjct: 428 DVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYF 487
Query: 685 NLDVLL 690
+L+
Sbjct: 488 MSYILV 493
Score = 86.5 bits (215), Expect = 1e-17
Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 102 GNMTFWQRLINSLLTAYEI-LYQNFIYLPRI-DTIMRNHFAKVGAARWPNIKDILRAHNA 159
GN+ W+ IN + T E+ LY F L + +++ F P I+ LR
Sbjct: 196 GNLNVWE-TINEIYT--ELRLYNEFSLLADEQNKLLKQQFG----PDTPTIR-ELRNRVQ 247
Query: 160 LTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQD--IEDFINASPAGVIYFAMGTFV 217
L V+ H + + +P P+V +GG+H+ P P D +E+F+N S GV+Y + G+ +
Sbjct: 248 LLFVNVHPVFDNNRPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNSTNGVVYVSFGSSI 307
Query: 218 DGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILAPNFPNI 277
D ++ + LL+ F L ++WK D LP NV KWFPQ +L N+
Sbjct: 308 DTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVL--KHKNV 365
Query: 278 V 278
Sbjct: 366 K 366
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 88.3 bits (219), Expect = 2e-18
Identities = 60/272 (22%), Positives = 101/272 (37%), Gaps = 24/272 (8%)
Query: 398 RLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALTLVDTHHL 457
RL+ L+ A L + + P I+ + + L + T L
Sbjct: 156 RLVRPLIFARSWLPKL-----------VVRRNLGLELGLPNIRRLFASGPLLEIAYTDVL 204
Query: 458 VTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVDGENLTPKRKA 517
IG + LP I ++Y ++GT + L
Sbjct: 205 FPPGDRLPFIGPYIGPLLGEAANELPYWIPA-----DRPIVYVSLGTVGNAVELL-AIVL 258
Query: 518 NLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVL 577
L + + +P NV V + PQ ++L P+ I HGG +
Sbjct: 259 EALADLDVRVIVSLGGARDTLVN--VPDNVIVADYVPQLELL--PRADAVIHHGGAGTTS 314
Query: 578 ESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFNFEYED-LKRKLDKVLNENSYRQK 636
E+LY GVP+V IP ADQ N ++E G G + F E+ L+ +++VL ++SYR+
Sbjct: 315 EALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRA 374
Query: 637 IAKFSAIYRSEVTDIVERTMFYIEYVVRHNGA 668
+ + ++ E D + +E R
Sbjct: 375 AERLAEEFKEE--DGPAKAADLLEEFAREKKK 404
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 85.5 bits (212), Expect = 1e-17
Identities = 66/238 (27%), Positives = 105/238 (44%), Gaps = 25/238 (10%)
Query: 416 YLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALTLVDTHHLVTDPKPNNPNVIEIGGIH 475
Y+ R+ ++ H + P ++ + R L LV T PK P
Sbjct: 154 YVARLSALLEEHG-----ITTPPVEFLAAPRRDLNLVYT------PKAFQPAGETFDDSF 202
Query: 476 ITPGKPLPQDIED---FINASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWII- 531
G + ED V+ ++GT N P ++ F L ++
Sbjct: 203 TFVGPCIGDRKEDGSWERPGDGRPVVLISLGTVF---NNQPSFYRTCVEAFRDLDWHVVL 259
Query: 532 ---WKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVG 588
+DP++ E LPPNV+V +W PQ +IL K FITHGG++S +E+L++GVPMV
Sbjct: 260 SVGRGVDPADLGE-LPPNVEVRQWVPQLEIL--KKADAFITHGGMNSTMEALFNGVPMVA 316
Query: 589 IPVFADQAQNLLALQEKGMGEMVEF-NFEYEDLKRKLDKVLNENSYRQKIAKFSAIYR 645
+P ADQ + E G+G + E L+ + VL++ Y +++ K A R
Sbjct: 317 VPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEIR 374
Score = 35.8 bits (83), Expect = 0.096
Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 22/151 (14%)
Query: 127 YLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALTLVDTHHLVTDPKPNNPNVIEIGGIH 186
Y+ R+ ++ H P ++ + L LV T PK P
Sbjct: 154 YVARLSALLEEHGITT-----PPVEFLAAPRRDLNLVYT------PKAFQPAGETFDDSF 202
Query: 187 ITPGKPLPQDIED---FINASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWII- 242
G + ED V+ ++GT N P ++ F L ++
Sbjct: 203 TFVGPCIGDRKEDGSWERPGDGRPVVLISLGTVF---NNQPSFYRTCVEAFRDLDWHVVL 259
Query: 243 ---WKIDPSNFQETLPPNVKVGKWFPQNDIL 270
+DP++ E LPPNV+V +W PQ +IL
Sbjct: 260 SVGRGVDPADLGE-LPPNVEVRQWVPQLEIL 289
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 82.4 bits (204), Expect = 2e-16
Identities = 57/309 (18%), Positives = 98/309 (31%), Gaps = 42/309 (13%)
Query: 331 YDVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTPPHAAHLLGNYYNPAFMADYKLR 388
D+++A+ GA +E P + P LG +
Sbjct: 105 PDLVVADPLAF---AGAVAAEALGIPAVRLLLGPDTPTSAFPPPLGRANLRLYALLEAEL 161
Query: 389 YTGNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNA 448
+ + W + + LP + + + ++ P +
Sbjct: 162 WQDLLGAW---LRARRRRLG--------LPPLSLLDGSDVPELYGF-SPAVLPPPPDWPR 209
Query: 449 LTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVDG 508
LV + P P P ++ F+ A +Y G+ V
Sbjct: 210 FDLVTGYGFRDVP----------------YNGPPPPELWLFLAAGRP-PVYVGFGSMV-- 250
Query: 509 ENLTPKRKANLLKLFSGLKQW-IIWKIDPSNF-QETLPPNVKVGKWFPQNDILAHPKCVL 566
P+ A L I + E LP NV+V + P + +L P+C
Sbjct: 251 -VRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLL--PRCAA 307
Query: 567 FITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRKLD 625
+ HGG + +L GVP + +P F DQ + E G G ++ E L L
Sbjct: 308 VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALR 367
Query: 626 KVLNENSYR 634
++L+ S R
Sbjct: 368 RLLDPPSRR 376
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 74.7 bits (184), Expect = 8e-14
Identities = 41/113 (36%), Positives = 56/113 (49%), Gaps = 14/113 (12%)
Query: 551 KWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEM 610
W PQ +ILAH F+TH G +SVLESL+HGVPM P++A+Q N L MG
Sbjct: 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELV-ADMGVA 403
Query: 611 VEF-------NF-EYEDLKRKLDKVLNENS-----YRQKIAKFSAIYRSEVTD 650
V NF E +L+R + ++ R+K A+ A R V +
Sbjct: 404 VAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEE 456
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 62.9 bits (153), Expect = 4e-10
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 16/84 (19%)
Query: 537 SNFQETLPP-----NVKVGK---WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVG 588
+N +E LP +GK W PQ +LA P F+TH G +S+LESL+ GVPM
Sbjct: 326 TNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAA 385
Query: 589 IPVFADQAQNLLALQEKGMGEMVE 612
P++A+Q N EMVE
Sbjct: 386 WPLYAEQKFNAF--------EMVE 401
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 61.9 bits (150), Expect = 6e-10
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 51/223 (22%)
Query: 465 NPNVI-EIGGIHITPGKPLPQDIE---------DFINASP-AGVIYFAMGTFVDGENLTP 513
+P ++ + + + P PL + I+ D++N P V+Y + G+ G +L+
Sbjct: 222 DPKLLGRVARVPVYPIGPLCRPIQSSKTDHPVLDWLNKQPNESVLYISFGS---GGSLSA 278
Query: 514 KRKANLLKLFSGLKQWIIWKIDP-------------------SNFQETLPPNV------- 547
K+ L +Q +W + P N E LP
Sbjct: 279 KQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDR 338
Query: 548 --KVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEK 605
V W PQ +ILAH F+TH G S LES+ GVPM+ P+FA+Q N L ++
Sbjct: 339 GFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDE 398
Query: 606 GMGEMVEFNFEYEDLKRK-----LDKVLNEN---SYRQKIAKF 640
+G V + E + R + KV+ E R+K+ K
Sbjct: 399 -LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKL 440
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 60.0 bits (145), Expect = 2e-09
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 488 DFINASPAG-VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKID----PSNFQET 542
D+++ P G V+Y A G+ + + A+ + FS L W++ + P F ET
Sbjct: 256 DWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAISNFSYL--WVVRASEESKLPPGFLET 313
Query: 543 LPPNVK-VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLA 601
+ + V KW PQ +L++ F+TH G +S +E L GVPMV +P + DQ N
Sbjct: 314 VDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKY 373
Query: 602 LQE 604
+Q+
Sbjct: 374 IQD 376
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 58.7 bits (142), Expect = 8e-09
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 536 PSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ 595
P F E K+ +W PQ +LAHP F+TH G +S +E+L GVP+V P + DQ
Sbjct: 328 PEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQ 387
Query: 596 AQN 598
+
Sbjct: 388 VTD 390
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 57.7 bits (139), Expect = 1e-08
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 23/207 (11%)
Query: 464 NNPNVIEIGGIHITPGKPLP-QDIE------DFINASP-AGVIYFAMGTFVDGENLTPKR 515
N P+V +G I +P P QD+ +++ P A V++ G+ K
Sbjct: 236 NYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKE 295
Query: 516 KANLLKLFSGLKQWIIWK-------IDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFI 568
A+ L+L W + + P F + + + W PQ +ILAH F+
Sbjct: 296 IAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFV 355
Query: 569 THGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFNFEYEDLKRKLDKVL 628
+H G +S++ESL+ GVP+V P++A+Q N L K + VE +Y + D+++
Sbjct: 356 SHCGWNSIVESLWFGVPIVTWPMYAEQQLNAF-LMVKELKLAVELKLDY---RVHSDEIV 411
Query: 629 NENSYRQKI----AKFSAIYRSEVTDI 651
N N I K + + R V DI
Sbjct: 412 NANEIETAIRCVMNKDNNVVRKRVMDI 438
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 56.0 bits (135), Expect = 5e-08
Identities = 35/113 (30%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMG 608
V W PQ +ILAH F++H G +SVLESL+ GVP+ P++A+Q N + K +G
Sbjct: 344 VCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV-KELG 402
Query: 609 EMVEFNFEY----------EDLKRKLDKVLN-ENSYRQKIAKFSAIYRSEVTD 650
VE +Y +++ + +++ E+ R+K+ + + R V D
Sbjct: 403 LAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEIAEAARKAVMD 455
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 55.0 bits (132), Expect = 1e-07
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 28/158 (17%)
Query: 468 VIEIGGIHITPGKP---LPQD---IEDFINASPAGVIYFAMGTFVDGENLTPKRKANLLK 521
V IG +H+ P L ++ IE VI+ ++G+ L +++
Sbjct: 231 VYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGS------LALMEINEVME 284
Query: 522 LFSGL---KQWIIWKIDP-----SNFQETLPPNVK--------VGKWFPQNDILAHPKCV 565
SGL Q +W I P S + E+LP + KW PQ ++L+HP
Sbjct: 285 TASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVG 344
Query: 566 LFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQ 603
F +H G +S LES+ GVPM+ P +DQ N L+
Sbjct: 345 GFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLE 382
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 54.7 bits (131), Expect = 1e-07
Identities = 48/162 (29%), Positives = 71/162 (43%), Gaps = 27/162 (16%)
Query: 495 AGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKI-DPSN--------------- 538
+ VIY + GT V+ L+ K+ L + K+ +W I D N
Sbjct: 261 SSVIYVSFGTMVE---LSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEK 317
Query: 539 ---FQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ 595
F+ L + W Q ++L H F+TH G S LESL GVP+V P+++DQ
Sbjct: 318 IAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQ 377
Query: 596 AQNLLALQEK-GMGEMVEFN----FEYEDLKRKLDKVLNENS 632
N L+E G V N E +++R L+ V+ E S
Sbjct: 378 PANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKS 419
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 53.9 bits (129), Expect = 2e-07
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEK 605
V +W PQ +IL+H F++H G SVLESL GVP+V P++A+Q N L E+
Sbjct: 339 VTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE 395
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 52.2 bits (125), Expect = 8e-07
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 23/122 (18%)
Query: 494 PAGVIYFAMGTFVDGENLTPKRKANLLKLFSGL---KQWIIWKIDP-------------S 537
P VIY +G+ L P + L++L GL K+ IW I
Sbjct: 282 PRSVIYACLGSLC---RLVP---SQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKE 335
Query: 538 NFQETLPPNVKVGK-WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQA 596
NF+E + + K W PQ IL+HP F+TH G +S +E + GVPM+ P+FA+Q
Sbjct: 336 NFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQF 395
Query: 597 QN 598
N
Sbjct: 396 LN 397
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 49.5 bits (118), Expect = 5e-06
Identities = 24/47 (51%), Positives = 29/47 (61%)
Query: 552 WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQN 598
W PQ IL+H F+TH G +SVLE L GVPM+ P+ ADQ N
Sbjct: 350 WAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVN 396
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 49.6 bits (119), Expect = 5e-06
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 14/131 (10%)
Query: 475 HITPGKPLPQDIEDFINASPAG-VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQ----- 528
+ + D ++++ P G V+Y ++G+F+ A + ++ +GL+
Sbjct: 253 SSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFL------SVSSAQMDEIAAGLRDSGVRF 306
Query: 529 -WIIWKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMV 587
W+ + + S +E V W Q +L H F TH G +S LE+++ GVPM+
Sbjct: 307 LWVA-RGEASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPML 365
Query: 588 GIPVFADQAQN 598
P+F DQ N
Sbjct: 366 TFPLFWDQPLN 376
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 49.1 bits (117), Expect = 7e-06
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 22/122 (18%)
Query: 493 SPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLK---QWIIW----KIDPSNFQETLPP 545
P VIY + G+ +N L ++ +GL+ Q IW + +E LP
Sbjct: 283 KPDSVIYLSFGSVASFKN------EQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPE 336
Query: 546 NVK---VGK------WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQA 596
+ GK W PQ IL H F+TH G +S+LE + G+PMV PV A+Q
Sbjct: 337 GFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQF 396
Query: 597 QN 598
N
Sbjct: 397 YN 398
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 48.9 bits (116), Expect = 8e-06
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEK--- 605
V W PQ +L H F+TH G +S+LE++ GVPMV P++A+Q N + + ++
Sbjct: 338 VKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKI 397
Query: 606 --GMGEMVEFNFEYEDLKRKLDKVLNENSYRQK 636
M E ++++++ +++ E R++
Sbjct: 398 AISMNESETGFVSSTEVEKRVQEIIGECPVRER 430
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 48.7 bits (116), Expect = 9e-06
Identities = 51/209 (24%), Positives = 93/209 (44%), Gaps = 29/209 (13%)
Query: 452 VDTHHLVTDPKPNNPNVIEIGGIH----ITPGKPLPQDIEDFI------NASPAGVIYFA 501
V H + NP +++IG +H T KP + ED P VIY +
Sbjct: 222 VKNHQASYNNG-QNPQILQIGPLHNQEATTITKPSFWE-EDMSCLGWLQEQKPNSVIYIS 279
Query: 502 MGTFVDGENLTPKRKANLLKLFSGLK---QWIIWKIDPSNFQETLPPNV--------KVG 550
G++V +P ++N+ L L+ + IW ++P ++E LPP KV
Sbjct: 280 FGSWV-----SPIGESNVRTLALALEASGRPFIWVLNP-VWREGLPPGYVERVSKQGKVV 333
Query: 551 KWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEM 610
W PQ ++L H ++TH G +S +E++ ++ PV DQ N + + +
Sbjct: 334 SWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGV 393
Query: 611 VEFNFEYEDLKRKLDKVLNENSYRQKIAK 639
F ++++ L KV+ ++ +++ K
Sbjct: 394 RISGFGQKEVEEGLRKVMEDSGMGERLMK 422
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 48.5 bits (115), Expect = 1e-05
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 495 AGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGK--- 551
+ V+Y + G+ ++ + A LK W+I + + + L VK G+
Sbjct: 269 SSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVV 328
Query: 552 --WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQ 595
W PQ IL+H F+TH G +S +E++ GVP+V P + DQ
Sbjct: 329 LEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 46.0 bits (109), Expect = 6e-05
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 536 PSNFQETLPPN--VKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFA 593
P F+E + + VG W PQ IL+H F+TH G +SV+E L G ++ PV
Sbjct: 329 PDGFEERVKGRGMIHVG-WVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLN 387
Query: 594 DQAQNLLALQEKGMG 608
+Q N L K +G
Sbjct: 388 EQGLNTRLLHGKKLG 402
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 43.9 bits (103), Expect = 3e-04
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 34/179 (18%)
Query: 479 GKPLPQDIEDFINA-SPAGVIYFAMGT--FVDGENLTPKRKANLLKLFSGLKQWIIWKID 535
GKPL ++N P V++ A GT F + + ++ L +GL ++I +
Sbjct: 235 GKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQF---QEFCLGMELTGLP-FLIAVMP 290
Query: 536 P---SNFQETLPPNVKV---------GKWFPQNDILAHPKCVLFITHGGIHSVLESLYHG 583
P S QE LP + W Q IL+HP F+ H G S+ ESL
Sbjct: 291 PKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSD 350
Query: 584 VPMVGIPVFADQAQNLLALQEKGMGEMVEFN----------FEYEDLKRKLDKVLNENS 632
+V IP ADQ L + + E +E + F E L+ + V++++S
Sbjct: 351 CQIVFIPQLADQ-----VLITRLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDS 404
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 42.4 bits (99), Expect = 0.001
Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 14/110 (12%)
Query: 537 SNFQETLPPNVKV---------GKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMV 587
S QE LP + G W Q IL+HP F++H G S+ ESL +V
Sbjct: 300 STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIV 359
Query: 588 GIPVFADQAQN--LLALQEKGMGEMVEFN---FEYEDLKRKLDKVLNENS 632
+P DQ N LL+ + K E+ F E L+ ++ V+ +S
Sbjct: 360 LVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDS 409
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 40.0 bits (94), Expect = 0.002
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 566 LFITHGGIHSVLESLYHGVPMVGIP----VFADQAQNLLALQEKGMGEMV-EFNFEYEDL 620
L I+ G ++ E L G P + +P Q N L L + G ++ + E L
Sbjct: 75 LVISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKL 134
Query: 621 KRKLDKVLNENSYRQKIAKFSAIYRSEVTDIVER 654
L K+L + ++ K + S + D ++R
Sbjct: 135 VEALLKLLLKPLRLYEMNKAAKG--SRLKDAIKR 166
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 40.4 bits (94), Expect = 0.003
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 536 PSNFQETLPP-NVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFAD 594
P F+E + V G W Q IL HP F+ H G ++ ESL MV IP +D
Sbjct: 301 PEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSD 360
Query: 595 Q 595
Q
Sbjct: 361 Q 361
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 38.7 bits (90), Expect = 0.009
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 564 CVLFITHGGIHSVLESLYHGVPMVGIPVFA--DQAQNLLALQEKGMGEMVEFNFEYEDLK 621
L ITHGG + E+L G P++ IP +Q N + L++ G G +E+ E L+
Sbjct: 248 AELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYK-ELRLLE 306
Query: 622 RKLDKVLNENSYRQK 636
LD N R K
Sbjct: 307 AILDI---RNMKRYK 318
>gnl|CDD|237952 PRK15362, PRK15362, pathogenicity island 2 effector protein SseC;
Provisional.
Length = 473
Score = 34.4 bits (79), Expect = 0.23
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 588 GIPVFADQAQNLLALQEKGMGEMVEF--NFEYEDLKRKLDKVLNENSYRQKIAKFSAIYR 645
+ VF D A L + E+ E + + ++ + ++ K + + +K F AI+
Sbjct: 99 ILSVFGDNA-QSLCQALEIATEVQEALRDKQVKEYQEQIQKAIEQEDKARKAGIFGAIF- 156
Query: 646 SEVTDIVE 653
+ I E
Sbjct: 157 DWIVGIFE 164
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 33.8 bits (78), Expect = 0.37
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 566 LFITHGGIHSVLESLYHGVPMVGIP----VFADQAQNLLALQEKGMGEMVEFN-FEYEDL 620
L I+ G ++ E L GVP + +P Q N L++ G ++ + E L
Sbjct: 255 LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKL 314
Query: 621 KRKLDKVLNENSYRQKIAK 639
+ ++L+ + +A+
Sbjct: 315 AELILRLLSNPEKLKAMAE 333
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 32.6 bits (75), Expect = 0.37
Identities = 18/97 (18%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 545 PNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPV--FADQAQNLLAL 602
P+ + + + D+ P G +LE++ GVP++ V A+ ++
Sbjct: 68 PDEDLIELYRIADLFVLPS----RYEGFGLVLLEAMAAGVPVIATDVGGPAEIVKDGET- 122
Query: 603 QEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQKIAK 639
G +V+ + E L ++K+L + R+++ +
Sbjct: 123 -----GLLVDPG-DAEALAEAIEKLLKDEELRERLGE 153
>gnl|CDD|218002 pfam04278, Tic22, Tic22-like family. The preprotein translocation
at the inner envelope membrane of chloroplasts so far
involves five proteins: Tic110, Tic55, Tic40, Tic22
(this family) and Tic20. The molecular function of these
proteins has not yet been established.
Length = 270
Score = 32.0 bits (73), Expect = 1.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 576 VLESLYHGVPMV-GIPVF-ADQAQNLLALQEKGMGEMVEFNFEYEDLKRKLDKV 627
+L+ V G+PVF A + L +Q+ + + F F EDL+R LD+
Sbjct: 165 LLKKNGQNVNDFRGVPVFQARSGEGYLTIQQDNK-QYIPFFFSKEDLQRMLDRA 217
>gnl|CDD|235589 PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase;
Reviewed.
Length = 425
Score = 31.7 bits (73), Expect = 1.7
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 10/75 (13%)
Query: 567 FITHGGIHSVLESLYHGVP-MVGIPV--FADQAQNLLALQEKGMGEMVEFNFEYEDLKRK 623
+ GG H+ LE GVP + G F + + LL + G VE + EDL +
Sbjct: 329 LVKRGG-HNPLEPAAFGVPVISGPHTFNFKEIFERLL---QAGAAIQVE---DAEDLAKA 381
Query: 624 LDKVLNENSYRQKIA 638
+ +L + RQ
Sbjct: 382 VTYLLTDPDARQAYG 396
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 31.5 bits (72), Expect = 1.8
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 566 LFITHGGIHSVLESLYHGVPMVGIP---VFADQAQNLLALQEKGMGEMVEFN-FEYEDLK 621
L I+ G +V E GVP + IP DQ N L++ G G ++ E L
Sbjct: 253 LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLL 312
Query: 622 RKLDKVL----NENSYRQKIAKFSA 642
L K+L N + + K +
Sbjct: 313 EALLKLLLDPANLEAMAEAARKLAK 337
>gnl|CDD|227351 COG5018, KapD, Inhibitor of the KinA pathway to sporulation,
predicted exonuclease [General function prediction
only].
Length = 210
Score = 30.7 bits (69), Expect = 2.3
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 550 GKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGE 609
GK+ PQ + + L + V+++ V P + ++L + +K + E
Sbjct: 18 GKYSPQEFEIIEIEAGLVKSIDD--EVVDTFSSYVRPKKFPKLTKRCKSLTKITQKQVDE 75
Query: 610 MVEFNFEYEDLKRKLDK 626
F+ +ED RKL++
Sbjct: 76 APIFSMVFEDFIRKLNE 92
>gnl|CDD|222197 pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1.
Length = 92
Score = 28.7 bits (65), Expect = 3.7
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 584 VPMVGIPVFADQAQNLLALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQKIAK 639
G P+ D+ L L E G E+V + + E+L KL +L + R+ IA
Sbjct: 18 AAACGAPLLTDRTPGLEELFEPG-EEIVLYR-DPEELAEKLRYLLADPEERRAIAA 71
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 30.3 bits (69), Expect = 3.9
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 564 CVLFITHGGIHSVLESLYHGVPMVGIPVFA--DQAQNLLALQEKGMGE-MVEFNFEYEDL 620
C I + G + E+LY G P++ +P+ +Q N L L+ G G M + + L
Sbjct: 250 CSAVICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
Query: 621 KRKLDKV 627
+R L+++
Sbjct: 310 RRFLERL 316
>gnl|CDD|237144 PRK12582, PRK12582, acyl-CoA synthetase; Provisional.
Length = 624
Score = 30.4 bits (69), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 176 NPNVIEIGGIHITPGKPLPQDIEDFI 201
N + G ++I GKPLP E+ I
Sbjct: 284 NGLLWGGGTLYIDDGKPLPGMFEETI 309
Score = 30.4 bits (69), Expect = 5.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 465 NPNVIEIGGIHITPGKPLPQDIEDFI 490
N + G ++I GKPLP E+ I
Sbjct: 284 NGLLWGGGTLYIDDGKPLPGMFEETI 309
>gnl|CDD|173860 cd08495, PBP2_NikA_DppA_OppA_like_8, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 482
Score = 30.0 bits (68), Expect = 5.5
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 140 AKVGAARWPNIKDILRAHNALTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIED 199
A +R P++ + A + T+ T ++P + P V+ G K D D
Sbjct: 105 AGQVRSRIPSVTSV-EAIDDNTVRIT---TSEPFADLPYVLTTGLASSPSPKEKAGDAWD 160
Query: 200 FINASPAGVIYFAMGTFVDGENLTPKRKAN 229
A PAG F + FV E + R
Sbjct: 161 DFAAHPAGTGPFRITRFVPRERIELVRNDG 190
>gnl|CDD|220087 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger. The DNA
Polymerase alpha zinc finger domain adopts an
alpha-helix-like structure, followed by three turns, all
of which involve proline. The resulting motif is a
helix-turn-helix motif, in contrast to other zinc finger
domains, which show anti-parallel sheet and helix
conformation. Zinc binding occurs due to the presence of
four cysteine residues positioned to bind the metal
centre in a tetrahedral coordination geometry. Function
of this domain is uncertain: it has been proposed that
the zinc finger motif may be an essential part of the
DNA binding domain.
Length = 187
Score = 29.5 bits (67), Expect = 5.6
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 597 QNLLALQEKGMGEMVEFNFE-YEDLKRKLDKVLNENSYR 634
+ K + + E N E Y+ LK +DK L+++ YR
Sbjct: 141 KPQEKESLKKVLALAEQNRERYKTLKGTVDKYLSKSGYR 179
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase.
Length = 359
Score = 29.9 bits (67), Expect = 5.6
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 624 LDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHHLRTASTRLTW 680
+D V + NS R KI IYR +V +V ++ YI ++ + R T ++W
Sbjct: 78 VDMVPDYNSQRVKIYILPGIYREKV--LVPKSKPYISFIGNES-----RAGDTVISW 127
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 29.6 bits (67), Expect = 6.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 569 THGGIHSVLESLYHGVPMVGIPVFAD---QAQNLLALQEKGMGE 609
TH G+ L L V ++GI V AD + +L L +
Sbjct: 193 THAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAEL 236
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional.
Length = 464
Score = 29.3 bits (66), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 692 IGLGLGGSAYVLYAVVFWLL 711
+G+G G +L+A +FWLL
Sbjct: 317 VGIGFGAVVMLLFAGLFWLL 336
Score = 29.3 bits (66), Expect = 8.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 773 IGLGLGGSAYVLYAVVFWLL 792
+G+G G +L+A +FWLL
Sbjct: 317 VGIGFGAVVMLLFAGLFWLL 336
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General
function prediction only].
Length = 231
Score = 28.9 bits (65), Expect = 9.8
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 148 PNIKDILRAHNALTLVDTHHLVTDPKPN 175
+ D+L++ T+V+ + +PKPN
Sbjct: 102 YRVVDLLKSRKDFTIVEEKDYIRNPKPN 129
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.431
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 45,195,759
Number of extensions: 4645936
Number of successful extensions: 4251
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4239
Number of HSP's successfully gapped: 67
Length of query: 847
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 742
Effective length of database: 6,280,432
Effective search space: 4660080544
Effective search space used: 4660080544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.0 bits)