RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10509
(847 letters)
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD,
enzyme, nucleotide binding,
sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo
sapiens}
Length = 170
Score = 218 bits (559), Expect = 7e-67
Identities = 66/170 (38%), Positives = 106/170 (62%), Gaps = 5/170 (2%)
Query: 478 PGKPLPQDIEDFI-NASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDP 536
KPLP+++EDF+ ++ GV+ F++G+ V N+T +R + + + Q ++W+ D
Sbjct: 3 AAKPLPKEMEDFVQSSGENGVVVFSLGSMV--SNMTEERANVIASALAQIPQKVLWRFDG 60
Query: 537 SNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQA 596
+ +TL N ++ KW PQND+L HPK FITHGG + + E++YHG+PMVGIP+FADQ
Sbjct: 61 NKP-DTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQP 119
Query: 597 QNLLALQEKGMGEMVEFN-FEYEDLKRKLDKVLNENSYRQKIAKFSAIYR 645
N+ ++ +G V+FN DL L +V+N+ SY++ + K S I
Sbjct: 120 DNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKENVMKLSRIQH 169
Score = 103 bits (258), Expect = 1e-25
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 5/87 (5%)
Query: 189 PGKPLPQDIEDFI-NASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDP 247
KPLP+++EDF+ ++ GV+ F++G+ V N+T +R + + + Q ++W+ D
Sbjct: 3 AAKPLPKEMEDFVQSSGENGVVVFSLGSMV--SNMTEERANVIASALAQIPQKVLWRFDG 60
Query: 248 SNFQETLPPNVKVGKWFPQNDILA-PN 273
+ +TL N ++ KW PQND+L P
Sbjct: 61 NKP-DTLGLNTRLYKWIPQNDLLGHPK 86
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance,
glycosylation, enzyme, macrolide, carbohydrate; HET: ERY
UDP; 1.7A {Streptomyces antibioticus}
Length = 430
Score = 165 bits (419), Expect = 2e-44
Identities = 54/347 (15%), Positives = 107/347 (30%), Gaps = 61/347 (17%)
Query: 331 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 390
D+++ + L+ ++ P ++ P L + +
Sbjct: 105 PDLVLHDITSY---PARVLARRWGVPAVSLSPNLVA-----------WKGYEEEVAEPMW 150
Query: 391 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALT 450
+R Y R + ++ + + +L
Sbjct: 151 REPRQTERGRA--------------YYARFEAWLKEN-----GITEHPDTFASHPPRSLV 191
Query: 451 LVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDGE 509
L+ + + +G + + + + A V+ ++G+
Sbjct: 192 LIPKALQPHADRVDEDVYTFVG-----ACQGDRAEEGGWQRPAGAEKVVLVSLGSAF--- 243
Query: 510 NLTPKRKANLLKLFSGLKQWIIW-----KIDPSNFQETLPPNVKVGKWFPQNDILAHPKC 564
P ++ F L W + K+ P+ E LP NV+V W PQ IL
Sbjct: 244 TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGE-LPDNVEVHDWVPQLAILRQAD- 301
Query: 565 VLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRK 623
LF+TH G E L PM+ +P DQ N LQ G+ + + L+
Sbjct: 302 -LFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLATEEATADLLRET 360
Query: 624 LDKVLNENSYRQKIAKFSAIYRS-----EVTDIVERTMFYIEYVVRH 665
++++ +++ + A D++E E RH
Sbjct: 361 ALALVDDPEVARRLRRIQAEMAQEGGTRRAADLIEA-----ELPARH 402
Score = 72.5 bits (178), Expect = 2e-13
Identities = 33/236 (13%), Positives = 69/236 (29%), Gaps = 48/236 (20%)
Query: 42 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 101
D+++ + L+ ++ P ++ P L + +
Sbjct: 105 PDLVLHDITSY---PARVLARRWGVPAVSLSPNLVA-----------WKGYEEEVAEPMW 150
Query: 102 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALT 161
+R Y R + ++ + G P+ +L
Sbjct: 151 REPRQTERGRA--------------YYARFEAWLKEN----GITEHPDT-FASHPPRSLV 191
Query: 162 LVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDGE 220
L+ + + +G + + + + A V+ ++G+
Sbjct: 192 LIPKALQPHADRVDEDVYTFVG-----ACQGDRAEEGGWQRPAGAEKVVLVSLGSAF--- 243
Query: 221 NLTPKRKANLLKLFSGLKQWIIW-----KIDPSNFQETLPPNVKVGKWFPQNDILA 271
P ++ F L W + K+ P+ E LP NV+V W PQ IL
Sbjct: 244 TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGE-LPDNVEVHDWVPQLAILR 298
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate,
glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A
{Streptomyces antibioticus}
Length = 424
Score = 151 bits (382), Expect = 1e-39
Identities = 63/344 (18%), Positives = 112/344 (32%), Gaps = 36/344 (10%)
Query: 331 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 390
D+I+ + L K+ P + P + + D
Sbjct: 110 PDLIVYDIASW---PAPVLGRKWDIPFVQLSPTFVAYEGF-----EEDVPAVQDPTADRG 161
Query: 391 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALT 450
+ E + L R T + + G V P + ++
Sbjct: 162 EEAAAPAGTGD-----AEEGAEAEDGLVRFFTRLSAFLEEHG-VDTPATEFLIAPN--RC 213
Query: 451 LVDTHHLVTDPKPNNP-NVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDG 508
+V N +G + + V+ A+G+
Sbjct: 214 IVALPRTFQIKGDTVGDNYTFVGPTY-----GDRSHQGTWEGPGDGRPVLLIALGSAF-- 266
Query: 509 ENLTPKRKANLLKLFSGLKQWIIW----KIDPSNFQETLPPNVKVGKWFPQNDILAHPKC 564
L GL ++ +DP++ +PPNV+V +W PQ DIL K
Sbjct: 267 -TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADL-GEVPPNVEVHQWVPQLDIL--TKA 322
Query: 565 VLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRK 623
FITH G+ S +E+L + VPMV +P A+Q N + E G+G + + E L+
Sbjct: 323 SAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELGLGRHIPRDQVTAEKLREA 382
Query: 624 LDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNG 667
+ V ++ +++A R +E ++ G
Sbjct: 383 VLAVASDPGVAERLAAVRQEIREA--GGARAAADILEGILAEAG 424
Score = 56.7 bits (137), Expect = 2e-08
Identities = 35/236 (14%), Positives = 65/236 (27%), Gaps = 31/236 (13%)
Query: 42 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 101
D+I+ + L K+ P + P + + D
Sbjct: 110 PDLIVYDIASW---PAPVLGRKWDIPFVQLSPTFVAYEGF-----EEDVPAVQDPTADRG 161
Query: 102 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALT 161
+ E + L R T + + G P + ++ +
Sbjct: 162 EEAAAPAGTGD-----AEEGAEAEDGLVRFFTRLSAFLEEHGVDT-PATEFLIAPN--RC 213
Query: 162 LVDTHHLVTDPKPNNP-NVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDG 219
+V N +G + + V+ A+G+
Sbjct: 214 IVALPRTFQIKGDTVGDNYTFVGPTY-----GDRSHQGTWEGPGDGRPVLLIALGSAF-- 266
Query: 220 ENLTPKRKANLLKLFSGLKQWIIW----KIDPSNFQETLPPNVKVGKWFPQNDILA 271
L GL ++ +DP++ +PPNV+V +W PQ DIL
Sbjct: 267 -TDHLDFYRTCLSAVDGLDWHVVLSVGRFVDPADL-GEVPPNVEVHQWVPQLDILT 320
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A
{Micromonospora echinospora}
Length = 402
Score = 134 bits (339), Expect = 5e-34
Identities = 55/347 (15%), Positives = 118/347 (34%), Gaps = 58/347 (16%)
Query: 331 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 390
D+++ + I G L+ ++ P + L R+
Sbjct: 103 PDLVVYDVFPF--IAGRLLAARWDRPAVRLTGGFAANEHYSLF-----KELWKSNGQRHP 155
Query: 391 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALT 450
++ ++ LL Y + +K+ LT
Sbjct: 156 ADVEAVHSVLVDLLGKYGVD--------------------------TPVKEYWDEIEGLT 189
Query: 451 LVDT-HHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDG 508
+V + + +G P + P V+ ++G
Sbjct: 190 IVFLPKSFQPFAETFDERFAFVG-----PTLTGRDGQPGWQPPRPDAPVLLVSLGNQF-- 242
Query: 509 ENLTPKRKANLLKLFSGLKQWIIW----KIDPSNFQETLPPNVKVGKWFPQNDILAHPKC 564
N P+ + F+ ++ +DP+ LPPNV+ +W P + +LAH
Sbjct: 243 -NEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVL-GPLPPNVEAHQWIPFHSVLAH--A 298
Query: 565 VLFITHGGIHSVLESLYHGVPMVGIPVFA-DQAQNLLALQEKGMGEMVEFN-FEYEDLKR 622
+THG +VLE+ GVP+V +P FA + A + + E G+G ++ + E ++
Sbjct: 299 RACLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIRE 358
Query: 623 KLDKVLNENSYRQKIAKFSAIYRSE--VTDIVERTMFYIEYVVRHNG 667
++++ +++ R+++ + S + +E +
Sbjct: 359 AVERLAADSAVRERVRRMQRDILSSGGPARAADE----VEAYLGRVA 401
Score = 49.3 bits (118), Expect = 3e-06
Identities = 33/236 (13%), Positives = 68/236 (28%), Gaps = 48/236 (20%)
Query: 42 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 101
D+++ + I G L+ ++ P + L R+
Sbjct: 103 PDLVVYDVFPF--IAGRLLAARWDRPAVRLTGGFAANEHYSLF-----KELWKSNGQRHP 155
Query: 102 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALT 161
++ ++ LL Y + +K+ LT
Sbjct: 156 ADVEAVHSVLVDLLGKYGVD--------------------------TPVKEYWDEIEGLT 189
Query: 162 LVDT-HHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPA-GVIYFAMGTFVDG 219
+V + + +G P + P V+ ++G
Sbjct: 190 IVFLPKSFQPFAETFDERFAFVG-----PTLTGRDGQPGWQPPRPDAPVLLVSLGNQF-- 242
Query: 220 ENLTPKRKANLLKLFSGLKQWIIW----KIDPSNFQETLPPNVKVGKWFPQNDILA 271
N P+ + F+ ++ +DP+ LPPNV+ +W P + +LA
Sbjct: 243 -NEHPEFFRACAQAFADTPWHVVMAIGGFLDPAVL-GPLPPNVEAHQWIPFHSVLA 296
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure
initiative, center for eukaryotic structural genomics;
HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB:
3iaa_A*
Length = 415
Score = 121 bits (306), Expect = 1e-29
Identities = 57/341 (16%), Positives = 121/341 (35%), Gaps = 53/341 (15%)
Query: 331 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 390
D+++ ++ I G L+ ++ P + + AF ++ ++
Sbjct: 119 PDLVLYDDFPF--IAGQLLAARWRRPAVRL-----------------SAAFASNEHYSFS 159
Query: 391 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALT 450
+M I+ L LP +R A+ G + D L
Sbjct: 160 QDMVTLAGTIDPLD------------LPVFRDTLRDLLAEHGLSRSVV--DCWNHVEQLN 205
Query: 451 LVDT-HHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAG-VIYFAMGTFVDG 508
LV + + +G P + + ++ + V+ ++GT
Sbjct: 206 LVFVPKAFQIAGDTFDDRFVFVG-----PCFDDRRFLGEWTRPADDLPVVLVSLGTTF-- 258
Query: 509 ENLTPKRKANLLKLFSGLKQWII----WKIDPSNFQETLPPNVKVGKWFPQNDILAHPKC 564
N P + + F G ++ ++DP+ LPPNV+ +W P +L +
Sbjct: 259 -NDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAAL-GDLPPNVEAHRWVPHVKVL--EQA 314
Query: 565 VLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRK 623
+ +THGG+ +++E+LY G P+V +P D + + G+G ++ + + L
Sbjct: 315 TVCVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVDQLGLGAVLPGEKADGDTLLAA 374
Query: 624 LDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVR 664
+ V + + ++ R R +E +
Sbjct: 375 VGAVAADPALLARVEAMRGHVRRA--GGAARAADAVEAYLA 413
Score = 43.5 bits (103), Expect = 2e-04
Identities = 39/236 (16%), Positives = 80/236 (33%), Gaps = 48/236 (20%)
Query: 42 YDVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYT 101
D+++ ++ I G L+ ++ P + + AF ++ ++
Sbjct: 119 PDLVLYDDFPF--IAGQLLAARWRRPAVRL-----------------SAAFASNEHYSFS 159
Query: 102 GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALT 161
+M I+ L LP +R+ A+ G +R D L
Sbjct: 160 QDMVTLAGTIDPLD------------LPVFRDTLRDLLAEHGLSRSVV--DCWNHVEQLN 205
Query: 162 LVDT-HHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAG-VIYFAMGTFVDG 219
LV + + +G P + + ++ + V+ ++GT
Sbjct: 206 LVFVPKAFQIAGDTFDDRFVFVG-----PCFDDRRFLGEWTRPADDLPVVLVSLGTTF-- 258
Query: 220 ENLTPKRKANLLKLFSGLKQWII----WKIDPSNFQETLPPNVKVGKWFPQNDILA 271
N P + + F G ++ ++DP+ LPPNV+ +W P +L
Sbjct: 259 -NDRPGFFRDCARAFDGQPWHVVMTLGGQVDPAAL-GDLPPNVEAHRWVPHVKVLE 312
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis
orientalis} SCOP: c.87.1.5
Length = 415
Score = 112 bits (281), Expect = 1e-26
Identities = 44/343 (12%), Positives = 99/343 (28%), Gaps = 39/343 (11%)
Query: 332 DVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTP-PHAAHLLGNYYNPAFMADYKLR 388
++ I +++EK P + P P P+ + D +
Sbjct: 95 AAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQ 154
Query: 389 YT-GNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARN 447
+ N + +QR ++ +H +G I +
Sbjct: 155 WERNNQSAYQRY---------------------GGLLNSHRDAIGLPPVEDIFTFGYTDH 193
Query: 448 ALTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVD 507
D + +P + + ++ G + +PL ++ F++A P +Y G+
Sbjct: 194 PWVAADPV--LAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLGFGSLGA 250
Query: 508 GENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQET-LPPNVKVGKWFPQNDILAHPKCVL 566
+ + + +I ++ + + +
Sbjct: 251 PADAV----RVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF--GRVAA 304
Query: 567 FITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRKLD 625
I HGG + + G P + +P ADQ + E G+G + ++ L L
Sbjct: 305 VIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALA 364
Query: 626 KVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGA 668
L + + R++ ++ V R
Sbjct: 365 TALTP-ETHARATAVAGTIRTD--GAAVAARLLLDAVSREKPT 404
Score = 56.8 bits (137), Expect = 2e-08
Identities = 25/232 (10%), Positives = 62/232 (26%), Gaps = 31/232 (13%)
Query: 43 DVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTP-PHAAHLLGNYYNPAFMADYKLR 99
++ I +++EK P + P P P+ + D +
Sbjct: 95 AAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPSPYYPPPPLGEPSTQDTIDIPAQ 154
Query: 100 YTGNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDILRAHNA 159
+ N + LL + H +G +I +
Sbjct: 155 WERNNQSAYQRYGGLLNS--------------------HRDAIGLPPVEDIFTFGYTDHP 194
Query: 160 LTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVDG 219
D + +P + + ++ G + +PL ++ F++A P +Y G+
Sbjct: 195 WVAADPV--LAPLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPP-PVYLGFGSLGAP 251
Query: 220 ENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQET-LPPNVKVGKWFPQNDIL 270
+ + + +I ++ + +
Sbjct: 252 ADAV----RVAIDAIRAHGRRVILSRGWADLVLPDDGADCFAIGEVNHQVLF 299
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD; 2.08A {Micromonospora echinospora}
PDB: 3oth_A*
Length = 412
Score = 111 bits (280), Expect = 2e-26
Identities = 44/212 (20%), Positives = 82/212 (38%), Gaps = 23/212 (10%)
Query: 466 PNVIEIGGIHITPGKPLPQDIEDFINASPAG--VIYFAMGTFVDGENLTPKRKANLLKLF 523
P E+ + LP ++++ ++Y +GT G T + +
Sbjct: 215 PRRHELRPVPFAEQGDLP----AWLSSRDTARPLVYLTLGTSSGG---TVEVLRAAIDGL 267
Query: 524 SGLKQWII----WKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLES 579
+GL ++ +D S E +P NV++ W PQ +L P L + HGG + L +
Sbjct: 268 AGLDADVLVASGPSLDVSGLGE-VPANVRLESWVPQAALL--PHVDLVVHHGGSGTTLGA 324
Query: 580 LYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRKLDKVLNENSYRQKIA 638
L GVP + P D N A+ + G G+ + + + + ++L E SYR
Sbjct: 325 LGAGVPQLSFPWAGDSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGAR 384
Query: 639 KFSAIYRSE--VTDIVERTMFYIEYVVRHNGA 668
+A + ++V + +
Sbjct: 385 AVAAEIAAMPGPDEVVRL----LPGFASRSAG 412
Score = 41.2 bits (97), Expect = 0.001
Identities = 28/151 (18%), Positives = 52/151 (34%), Gaps = 16/151 (10%)
Query: 127 YLPRIDTIMRNHFAKVGAARWPNIKDILRAHNALTLVDTHHLVTDPKPNNPNVIEIGGIH 186
I+ +R ++G P I N + L P E+ +
Sbjct: 167 LTRSIEEEVRGLAQRLGLDLPPG--RIDGFGNPFIDIFPPSLQEPEFRARPRRHELRPVP 224
Query: 187 ITPGKPLPQDIEDFINASPAG--VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWII-- 242
LP ++++ ++Y +GT G T + + +GL ++
Sbjct: 225 FAEQGDLP----AWLSSRDTARPLVYLTLGTSSGG---TVEVLRAAIDGLAGLDADVLVA 277
Query: 243 --WKIDPSNFQETLPPNVKVGKWFPQNDILA 271
+D S E +P NV++ W PQ +L
Sbjct: 278 SGPSLDVSGLGE-VPANVRLESWVPQAALLP 307
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A
{Saccharopolyspora erythraea}
Length = 441
Score = 102 bits (255), Expect = 5e-23
Identities = 38/188 (20%), Positives = 71/188 (37%), Gaps = 12/188 (6%)
Query: 483 PQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE 541
P + ++++ P + +G ++ LL + II D +
Sbjct: 254 PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEG 313
Query: 542 --TLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNL 599
+P NV+ + P + +L P C + HGG S + HGVP V +P D
Sbjct: 314 VANIPDNVRTVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRA 371
Query: 600 LALQEKGMGEMVEFN-FEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSE--VTDIVERTM 656
QE G G + + L+ + +VL++ ++R A+ +E ++V
Sbjct: 372 QRTQEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSPAEVVGI-- 429
Query: 657 FYIEYVVR 664
E +
Sbjct: 430 --CEELAA 435
Score = 34.4 bits (79), Expect = 0.16
Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
Query: 194 PQDIEDFINASPA-GVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE 252
P + ++++ P + +G ++ LL + II D +
Sbjct: 254 PSVVPEWLHDEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEG 313
Query: 253 --TLPPNVKVGKWFPQNDILA 271
+P NV+ + P + +L
Sbjct: 314 VANIPDNVRTVGFVPMHALLP 334
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin,
teicoplanin, ORF1, natural products, antibiotic; HET:
UDP; 1.15A {Amycolatopsis orientalis} PDB: 3h4i_A*
1pn3_A* 1pnv_A*
Length = 404
Score = 99.6 bits (248), Expect = 2e-22
Identities = 44/336 (13%), Positives = 97/336 (28%), Gaps = 47/336 (13%)
Query: 332 DVIIAENHFMQEIYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNPAFMADYKLRYTG 391
D ++ + +++EK P L+P H A+ + G
Sbjct: 94 DAVVTTGLLPAAVAVRSMAEKLGIPYRYTV--LSPDHLPS-------EQSQAERDMYNQG 144
Query: 392 NMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRARNALTL 451
+ +NS + LP ++ + + +
Sbjct: 145 ADRLFGDAVNSHRASIG--------LPPVEHLYDYGYTDQPWLAADP------------- 183
Query: 452 VDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVDGENL 511
+++ +P + ++ G + +PL ++E F+ A +Y G+
Sbjct: 184 -----VLSPLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSP-PVYVGFGSGPAPAEA 237
Query: 512 TPKRKANLLKLFSGLKQWIIWKIDPSNFQET-LPPNVKVGKWFPQNDILAHPKCVLFITH 570
++ + ++ + + V + + + H
Sbjct: 238 A----RVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF--GRVAAVVHH 291
Query: 571 GGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLKRKLDKVLN 629
GG + G P V +P ADQ + + G+G + E L L L
Sbjct: 292 GGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT 351
Query: 630 ENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRH 665
R + A + R++ +E + R
Sbjct: 352 P-GIRARAAAVAGTIRTD--GTTVAAKLLLEAISRQ 384
Score = 46.4 bits (110), Expect = 3e-05
Identities = 25/232 (10%), Positives = 58/232 (25%), Gaps = 47/232 (20%)
Query: 43 DVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTPPHAAHLLGNYYNPAFMADYKLRY 100
D ++ + +++EK P P P + A Y
Sbjct: 94 DAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSP-DHLPSE-------QSQAERDMY---- 141
Query: 101 TGNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHF-AKVGAARWPNIKDILRAHNA 159
N + +++ N A +G ++ D
Sbjct: 142 --NQGADRLFGDAV----------------------NSHRASIGLPPVEHLYDYGYTD-Q 176
Query: 160 LTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFVDG 219
L L +P + ++ G + +PL ++E F+ A +Y G+
Sbjct: 177 PWLAADPVLS-PLRPTDLGTVQTGAWILPDQRPLSAELEGFLRAGSP-PVYVGFGSGPAP 234
Query: 220 ENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQET-LPPNVKVGKWFPQNDIL 270
++ + ++ + + V +
Sbjct: 235 AEAA----RVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQVLF 282
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC;
1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Length = 391
Score = 99.1 bits (247), Expect = 3e-22
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 14/223 (6%)
Query: 443 LRARNALTLVDTHHLVTDPKPNN---PNVIEIGGIHITPGKPLPQDIEDFINASPAG-VI 498
+ + LT + T L+ DP P + + + + P + A + +
Sbjct: 163 VCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPY-NGSGAFPAWGAARTSARRV 221
Query: 499 YFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE--TLPPNVKVGKWFPQN 556
MG V + + + P + LP N ++ + P N
Sbjct: 222 CICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVPLN 281
Query: 557 DILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMV---EF 613
L C L I GG + + G+P + +P + DQ L G G + +
Sbjct: 282 LFL--RTCELVICAGGSGTAFTATRLGIPQLVLPQYFDQFDYARNLAAAGAGICLPDEQA 339
Query: 614 NFEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSE--VTDIVER 654
++E + VL + + K S + +V
Sbjct: 340 QSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRT 382
Score = 33.2 bits (76), Expect = 0.30
Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 7/124 (5%)
Query: 154 LRAHNALTLVDTHHLVTDPKPNN---PNVIEIGGIHITPGKPLPQDIEDFINASPAG-VI 209
+ H+ LT + T L+ DP P + + + + P + A + +
Sbjct: 163 VCRHHGLTGLPTPELILDPCPPSLQASDAPQGAPVQYVPY-NGSGAFPAWGAARTSARRV 221
Query: 210 YFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE--TLPPNVKVGKWFPQN 267
MG V + + + P + LP N ++ + P N
Sbjct: 222 CICMGRMVLNATGPAPLLRAVAAATELPGVEAVIAVPPEHRALLTDLPDNARIAESVPLN 281
Query: 268 DILA 271
L
Sbjct: 282 LFLR 285
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis;
1.88A {Streptomyces fradiae}
Length = 384
Score = 95.6 bits (238), Expect = 4e-21
Identities = 37/238 (15%), Positives = 71/238 (29%), Gaps = 19/238 (7%)
Query: 443 LRARNALTLVDTHHLVTDPKP---NNPNVIEIGGIHITPGKPLPQDIEDFINASPAG-VI 498
+ L + L D P N + +E ++ +
Sbjct: 155 ELSELGLERLPAPDLFIDICPPSLRPANAAPARMMRHVAT-SRQCPLEPWMYTRDTRQRV 213
Query: 499 YFAMGTFV--DGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE--TLPPNVKVGKWFP 554
G+ V + + L K +I + + P +VG W P
Sbjct: 214 LVTSGSRVAKESYDRNFDFLRGLAKDLVRWDVELIVAAPDTVAEALRAEVPQARVG-WTP 272
Query: 555 QNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN 614
+ + P C L + H G S L L GVP + IP + + + G +
Sbjct: 273 LDVVA--PTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIALLPG 330
Query: 615 -FEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSE--VTDIVERTMFYIEYVVRHNGAH 669
E + ++ +++Y ++ S +V +E + H+ H
Sbjct: 331 EDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTA----LEQLAHHHHHH 384
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold,
glycopeptide, VACO antibiotic, transferase-antibiotic
complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A
{Amycolatopsis orientalis} SCOP: c.87.1.5
Length = 416
Score = 93.4 bits (232), Expect = 3e-20
Identities = 51/356 (14%), Positives = 101/356 (28%), Gaps = 52/356 (14%)
Query: 332 DVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTP-PHAAHLLGNYYNPAFMADYKLR 388
++A +++EK P P+ PH P L
Sbjct: 96 AAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLW 155
Query: 389 YTGNMTFWQRL---INSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILRA 445
F R +N LP ++ + + +L A
Sbjct: 156 EERAARFADRYGPTLNRRRAEIG--------LPPVEDVFGYGHGERP---------LLAA 198
Query: 446 RNALTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTF 505
L P + + ++ G ++ +PLP ++E F+ A ++ G+
Sbjct: 199 DPVL----------APLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSP-PVHIGFGSS 247
Query: 506 V--DGENLTPKRKANLLKLFSGLKQWIIWKIDPSNF-QETLPPNVKVGKWFPQNDILAHP 562
+ ++ + +I + + +
Sbjct: 248 SGRGIADAA----KVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALF--R 301
Query: 563 KCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN-FEYEDLK 621
+ I HG + + GVP + IP DQ + G+G + +E L
Sbjct: 302 RVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLS 361
Query: 622 RKLDKVLNENSYRQKIAKFSAIYRSE----VTDIVERTMFYIEYVV---RHNGAHH 670
L VL R + + + ++ D+V + + V H+ HH
Sbjct: 362 AALTTVLA-PETRARAEAVAGMVLTDGAAAAADLVLAAVGREKPAVPALEHHHHHH 416
Score = 44.1 bits (104), Expect = 1e-04
Identities = 28/235 (11%), Positives = 60/235 (25%), Gaps = 37/235 (15%)
Query: 43 DVIIAENHFMQEIYGAALSEKFACPLIT--YQPILTP-PHAAHLLGNYYNPAFMADYKLR 99
++A +++EK P P+ PH P L
Sbjct: 96 AAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLASPHLPPAYDEPTTPGVTDIRVLW 155
Query: 100 YTGNMTFWQRLINSLLTAYEILYQNFIYLPRIDTIMRNHF-AKVGAARWPNIKDILRAHN 158
F R Y P + N A++G ++
Sbjct: 156 EERAARFADR-----------------YGPTL-----NRRRAEIGLPPVEDVFGYGHGER 193
Query: 159 ALTLVDTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINASPAGVIYFAMGTFV- 217
L D P + + ++ G ++ +PLP ++E F+ A ++ G+
Sbjct: 194 PLLAADPVLA---PLQPDVDAVQTGAWLLSDERPLPPELEAFLAAGSP-PVHIGFGSSSG 249
Query: 218 -DGENLTPKRKANLLKLFSGLKQWIIWKIDPSNF-QETLPPNVKVGKWFPQNDIL 270
+ ++ + +I + + +
Sbjct: 250 RGIADAA----KVAVEAIRAQGRRVILSRGWTELVLPDDRDDCFAIDEVNFQALF 300
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati
enzyme discovery for natural product biosynthesis,
natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Length = 398
Score = 90.9 bits (226), Expect = 2e-19
Identities = 36/171 (21%), Positives = 63/171 (36%), Gaps = 15/171 (8%)
Query: 497 VIYFAMGTFVDGENLTPKRKAN-----LLKLFSGLKQWIIWKIDPSNFQE--TLPPNVKV 549
+ GT V N L + L ++ + Q LP V
Sbjct: 229 RLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKLGFEVVVAVSDKLAQTLQPLPEGVLA 288
Query: 550 GKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGE 609
FP + I+ P C + + HGG + L L GVP V +PV A+ + L G G
Sbjct: 289 AGQFPLSAIM--PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGV 346
Query: 610 MVEFN-FEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSE-----VTDIVER 654
V + E + ++ +++SY + +A + + ++E+
Sbjct: 347 EVPWEQAGVESVLAACARIRDDSSYVGNARRLAAEMATLPTPADIVRLIEQ 397
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU
initiative, center for eukaryotic structural genomics,
CESG fold; HET: TYD C0T; 1.60A {Micromonospora
echinospora} PDB: 3d0q_A* 3d0r_A*
Length = 398
Score = 88.0 bits (218), Expect = 1e-18
Identities = 28/162 (17%), Positives = 59/162 (36%), Gaps = 8/162 (4%)
Query: 497 VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQE--TLPPNVKVGKWFP 554
+ MGT ++ + ++ + + + + TLP NV+ W P
Sbjct: 234 EVAITMGT-IELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTLPRNVRAVGWTP 292
Query: 555 QNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFN 614
+ +L C + HGG +V+ ++ G+P + P DQ Q+ G +
Sbjct: 293 LHTLL--RTCTAVVHHGGGGTVMTAIDAGIPQLLAPDPRDQFQHTAREAVSRRGIGLVST 350
Query: 615 FEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSE--VTDIVER 654
+ + L +++ + S R + + + V R
Sbjct: 351 SD-KVDADLLRRLIGDESLRTAAREVREEMVALPTPAETVRR 391
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis,
glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP:
c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Length = 456
Score = 73.8 bits (182), Expect = 8e-14
Identities = 36/147 (24%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 466 PNVIEIGGIHITPGKPLPQDIEDFI---NASPAG-VIYFAMGTFVDGENLTPKRKANLLK 521
+ IG ++ P+ + + V+Y + GT P ++
Sbjct: 238 KTYLNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVT---TPPPAE---VVA 291
Query: 522 LFSGLKQ------WII----WKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHG 571
L L+ W + P F E V W PQ ++LAH F+TH
Sbjct: 292 LSEALEASRVPFIWSLRDKARVHLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHC 351
Query: 572 GIHSVLESLYHGVPMVGIPVFADQAQN 598
G +S+ ES+ GVP++ P F DQ N
Sbjct: 352 GWNSLWESVAGGVPLICRPFFGDQRLN 378
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation,
isoflavonoid, uridine diphosphate glycosyltransferase;
2.10A {Medicago truncatula} SCOP: c.87.1.10
Length = 482
Score = 70.8 bits (174), Expect = 7e-13
Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 497 VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQ------WII---------WKIDPSNFQE 541
V+Y G+ +TP++ LL+ GL WII S F
Sbjct: 297 VVYVNFGSTT---VMTPEQ---LLEFAWGLANCKKSFLWIIRPDLVIGGSVIF-SSEFTN 349
Query: 542 TLPPNVKVGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQN-LL 600
+ + W PQ+ +L HP F+TH G +S ES+ GVPM+ P FADQ +
Sbjct: 350 EIADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRF 409
Query: 601 ALQEKGMGEMVEFNFEYEDLKRKLDKVL 628
E +G ++ N + E+L + +++V+
Sbjct: 410 ICNEWEIGMEIDTNVKREELAKLINEVI 437
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold,
GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A
{Medicago truncatula} PDB: 3hbj_A*
Length = 454
Score = 69.2 bits (170), Expect = 2e-12
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 466 PNVIEIGGIHITPGKPLPQDIEDFI---NASPAG-VIYFAMGTFVDGENLTPKRKANLLK 521
++ +G ++T + D + + V+Y + G+ V P L
Sbjct: 240 KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVV---TPPPH---ELTA 293
Query: 522 LFSGLKQ------WII----WKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFITHG 571
L L++ W + P F E K+ W PQ +IL H +F+TH
Sbjct: 294 LAESLEECGFPFIWSFRGDPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHS 353
Query: 572 GIHSVLESLYHGVPMVGIPVFADQAQN 598
G +SVLE + GVPM+ P F DQ N
Sbjct: 354 GWNSVLECIVGGVPMISRPFFGDQGLN 380
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase,
N-glucosyltransferase, UDP-glucose- dependent, plant
glycosyltransferase; HET: UDP; 1.45A {Arabidopsis
thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Length = 480
Score = 66.1 bits (162), Expect = 2e-11
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQN 598
+ W PQ +LAHP F+TH G +S LES+ G+P++ P++A+Q N
Sbjct: 343 IPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMN 392
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase;
HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10
PDB: 2acw_A*
Length = 463
Score = 64.9 bits (159), Expect = 5e-11
Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 549 VGKWFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQN-LLALQEKGM 607
+ W PQ ++LAH F++H G +S+LES++ GVP++ P++A+Q N ++E G+
Sbjct: 336 ICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGV 395
Query: 608 GEMVEFNFEYED 619
G + ++
Sbjct: 396 GLGLRVDYRKGS 407
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 8e-11
Identities = 95/697 (13%), Positives = 205/697 (29%), Gaps = 237/697 (34%)
Query: 166 HHLVTDPKPNNPNVIEIGGIHITPGKPLP------------QDIEDFINASPAGVIYFAM 213
HH+ E G L +D++D P ++
Sbjct: 5 HHMDF----------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDM----PKSIL---- 46
Query: 214 GTFVDGENL--TPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILA 271
+ + +++ + + L+LF W + + + V K+ ++L
Sbjct: 47 -SKEEIDHIIMSKDAVSGTLRLF-----WTL---------LSKQEEM-VQKFV--EEVLR 88
Query: 272 PNFPNIVGNFSAFEFGKFMMDR-ATDTSDELLSTPLFRKLINVGTADFQDSDGIPVYNIS 330
N+ F+M T+ + T ++ + + + D+ YN+S
Sbjct: 89 INYK-------------FLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYNVS 132
Query: 331 ----YDVIIAENHFMQE-------IYGAALSEKFACPLITYQPILTPPHAAHLLGNYYNP 379
Y + ++ I G S K + A + +Y
Sbjct: 133 RLQPYLKL--RQALLELRPAKNVLIDGVLGSGK---------TWV----ALDVCLSY--- 174
Query: 380 AFMADYKLRYTGNMTFW---------QRLINSLLTAYEILYQNFIYLPRI--DTIMRTHF 428
+ + + FW + ++ L + N+ + +R H
Sbjct: 175 ----KVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 429 AKVGAVKWPYIKDILRAR---NALTLVDTHHLVTDPKPN--NPNVIEIGGIH-----ITP 478
+ ++ +L+++ N L LV N N + T
Sbjct: 230 IQ------AELRRLLKSKPYENCL-------LVLL---NVQNAKAWNAFNLSCKILLTTR 273
Query: 479 GKPLPQDIEDFINASPAGVIY--FAMGTFVDGENLT-------------PKR--KAN--L 519
K + DF++A+ I T E + P+ N
Sbjct: 274 FK----QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 520 LKLFS-----GLKQWIIWK-----------------IDPSNFQET------LPPNVKVGK 551
L + + GL W WK ++P+ +++ PP+ +
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-- 387
Query: 552 WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMV 611
P +L ++ V + V ++ ++++ +
Sbjct: 388 --PT-------------------ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 612 EFNFEYEDLKRKLDKVLNENSYRQK-IAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHH 670
Y +LK KL+ NE + + + ++ + D++ + +Y H G HH
Sbjct: 427 SIPSIYLELKVKLE---NEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYSHIG-HH 480
Query: 671 LRTA--STRLTWYQ--YLNLDVL----LVIGLGLGGSAYVLYAVVFWLLMAYRQKIAKFS 722
L+ R+T ++ +L+ L S +L L Y+ I
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN--TLQQLKFYKPYICDND 538
Query: 723 AIYRSEVTDIVERTMFYIEYVVRHNGAHHLRTASTRL 759
Y V I ++++ + + + + T L
Sbjct: 539 PKYERLVNAI-------LDFLPKI-EENLICSKYTDL 567
Score = 57.9 bits (139), Expect = 1e-08
Identities = 113/776 (14%), Positives = 209/776 (26%), Gaps = 268/776 (34%)
Query: 70 TYQPILTPPHAAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSLLTAYEILYQNFIYLP 129
Y+ IL + AF+ ++ + +M S+L+ EI
Sbjct: 17 QYKDIL--SV--------FEDAFVDNFDCKDVQDMP------KSILSKEEI--------- 51
Query: 130 RIDTIMRNHFAKVGAARWPNIKDILRAHNALTL---VDTHHLVTDPKPNNPNVIEIGGIH 186
D I+ + A G R + L + + V+ + N ++ I
Sbjct: 52 --DHIIMSKDAVSGTLR---LFWTLLSKQEEMVQKFVEEVL-----RINYKFLMS--PIK 99
Query: 187 ITPGKPLPQDIEDFINASPAGVIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKID 246
+P +I + D + K + L+ + L+Q ++ ++
Sbjct: 100 TEQRQPSM-MTRMYIEQRDR--------LYNDNQVF-AKYNVSRLQPYLKLRQALL-ELR 148
Query: 247 PSNFQETLPPNVKV------GKWFPQNDILAPNFPNIVGNFSAFEFGKFMMDRATDTSDE 300
P+ NV + GK +A + +F F ++ S E
Sbjct: 149 PA-------KNVLIDGVLGSGKT-----WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 301 LLSTPLFRKLINVGTADFQDSDGIPVYNISYDVIIAE--NHFMQEIYGAAL--------- 349
+ L + L + SD + I AE + Y L
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA 256
Query: 350 --SEKFA--CP-LIT--YQPI---LTPPHAAHLLGNYYNPAFMADYKLRYTGNMTFWQRL 399
F C L+T ++ + L+ H+ ++++ D
Sbjct: 257 KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK------------ 304
Query: 400 INSLLTAYEILYQNFIYLPR-IDTIMRTHFAKVGAVK------WPYIKDILRARNALTLV 452
SLL Y L LPR + T + + W K +
Sbjct: 305 --SLLLKY--LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV---------- 350
Query: 453 DTHHLVTDPKPNNPNVIEIGGIHITPGKPLPQDIEDFINA-SPAGV--IYFAMGTFVDGE 509
N + I IE +N PA ++ + F
Sbjct: 351 -----------NCDKLTTI--------------IESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 510 NLTPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVLFIT 569
++ LL +IW + + V K + + PK
Sbjct: 386 HIPTI----LLS--------LIWFDVIKSDVMVV-----VNKLHKYSLVEKQPKESTI-- 426
Query: 570 HGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKGMGEMVEFNFEYEDLKRKLDK--- 626
I S+ L + +N AL +V+ Y + + D
Sbjct: 427 --SIPSIYLEL------------KVKLENEYALHRS----IVD---HYN-IPKTFDSDDL 464
Query: 627 -VLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHNGAHHLRTA--STRLTWYQ- 682
+ Y Y +I HHL+ R+T ++
Sbjct: 465 IPPYLDQY---------FY------------SHI--------GHHLKNIEHPERMTLFRM 495
Query: 683 -YLNLDVLLVIGLGLGGSAYVLYAVVFWLLMAYRQKI--AKFSAIYRSEVTDIVERTMFY 739
+L+ +L QKI + + + +++ FY
Sbjct: 496 VFLDFR---------------------FL----EQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 740 IEYVVRHNGAHH---------LRTASTRLTWYQYLNLDVLLVIGLGLGGSAYVLYA 786
Y+ ++ + L L +Y + LL I L A A
Sbjct: 531 KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTD---LLRIALMAEDEAIFEEA 583
Score = 51.0 bits (121), Expect = 1e-06
Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 81/208 (38%)
Query: 707 VFWLLMAYRQKIAK-F-------------SAIYRSEVTDIVERTMFYIEY---------- 742
+FW L++ ++++ + F S I ++E T YIE
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 743 -----VVRHNGAHHLRTASTRLTWYQYLNLDVLLVIGLGLGGS------AYVL--YAV-- 787
V R LR A L + + +D G+ GS V Y V
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLID-------GVLGSGKTWVALDVCLSYKVQC 178
Query: 788 -----VFWLLMALRKS---------------GKNGASRTKSTHS--------RSAVDRCL 819
+FWL + S N SR+ + + ++ + R L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 820 KR---PHCL---DNIESPRQSTTFEHTC 841
K +CL N+++ + F +C
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Score = 39.1 bits (90), Expect = 0.007
Identities = 32/207 (15%), Positives = 60/207 (28%), Gaps = 79/207 (38%)
Query: 2 MDRATDTSDELLSTPLFRKL-----INVGTADFQDSDGIP--VYNI------SYDVIIAE 48
+ ++S +L +RK+ + F S IP + ++ DV++
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSV------FPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 49 NHFMQ-------------EIYGAALSEKFACP--------LIT-YQPI-------LTPP- 78
N + I L K ++ Y L PP
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 79 -------HAAHLLGN-------------YYNPAFMADYKLRYTGNMTFWQRLINSLLTAY 118
H H L N + + F+ + K+R+ I + L
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL-EQKIRHDSTAWNASGSILNTLQQL 527
Query: 119 EILYQNFI------YLPRIDTIMRNHF 139
+ Y+ +I Y ++ I+ F
Sbjct: 528 K-FYKPYICDNDPKYERLVNAIL--DF 551
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 9e-10
Identities = 78/428 (18%), Positives = 139/428 (32%), Gaps = 160/428 (37%)
Query: 10 DEL-----LSTPLFRKLINVGTADFQD-----SDGIPVYNISYDVIIAENHFMQ------ 53
+EL L LI + D V+ +++ +++
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL----EWLENPSNTP 226
Query: 54 -EIY--GAALSEKFACPLIT-YQPILTPPH---AAHLLGNYYNPAFMADYKLRYTGNMTF 106
+ Y +S CPLI Q L H A LLG + P + G
Sbjct: 227 DKDYLLSIPIS----CPLIGVIQ--LA--HYVVTAKLLG--FTPGELRS---YLKGATGH 273
Query: 107 WQRLINSLLTA----YEILYQNFIYLPRIDTIMRNHFAKVGAARWPNIKDI-LRAHNA-- 159
Q L+ ++ A +E + + + + F + I +R + A
Sbjct: 274 SQGLVTAVAIAETDSWESFFVS------VRKAITVLF-------F-----IGVRCYEAYP 315
Query: 160 -LTLVDTHHLVTDPKPNN---PNVIEIGGIHITP-----GKPLPQDIEDFI---NAS--P 205
+L + ++ D NN P +P Q ++D++ N+
Sbjct: 316 NTSLPPS--ILEDSLENNEGVP----------SPMLSISNLTQEQ-VQDYVNKTNSHLPA 362
Query: 206 AGVIYFAM--G--TFVDGENLT--PK---------RKANLLKLFSGLKQWIIWKIDPSNF 250
+ ++ G V ++ P+ RK K SGL Q +I P F
Sbjct: 363 GKQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRK---AKAPSGLDQS---RI-P--F 409
Query: 251 QETLPPNVKVGKWF-PQNDILAPNFPNIVGNFSAFEFGKFMMDRATDTSDELLSTPLFRK 309
E K F P + +P F S + A+D L++ L +
Sbjct: 410 SERKL---KFSNRFLP---VASP-F------HSHL------LVPASD----LINKDLVKN 446
Query: 310 LINVGTADFQDSDGIPVYNISYDVIIAENHFMQEIYGAALSEKFACPLITYQPI----LT 365
++ D Q IPVY+ ++D + ++ ++SE+ I P+ T
Sbjct: 447 NVSFNAKDIQ----IPVYD-TFD---GSD--LRV-LSGSISER-IVDCIIRLPVKWETTT 494
Query: 366 PPHAAHLL 373
A H+L
Sbjct: 495 QFKATHIL 502
Score = 49.7 bits (118), Expect = 4e-06
Identities = 73/489 (14%), Positives = 131/489 (26%), Gaps = 181/489 (37%)
Query: 466 PNVIEIGGIHITPGKPLPQDI--------EDFINASPAGVIYFAMGTFVDGENLTPKRKA 517
P + G + +P E F P FA D E P A
Sbjct: 8 PLTLSHGSLEHV--LLVPTASFFIASQLQEQFNKILPEPTEGFA----ADDE---PTTPA 58
Query: 518 NLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQNDILAHPKCVL------FITHG 571
L+ F G + ++PS + + +L L ++
Sbjct: 59 ELVGKFLGY---VSSLVEPSKVGQF-------------DQVL---NLCLTEFENCYLEGN 99
Query: 572 GIHSVLESL------------------YHGVPMVGIPVFADQAQNLL-ALQEKGMGEMVE 612
IH++ L M P L A+ E +
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 613 F-----NFEY-EDLKRKLDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMFYIEYVVRHN 666
F +Y E+L R L Y+ Y V D+++ + + ++R
Sbjct: 160 FGGQGNTDDYFEEL-RDL--------YQ--------TYHVLVGDLIKFSAETLSELIRTT 202
Query: 667 GA---HH---------LRTASTR---------------LTWYQYLNLDVLL-VIGL---- 694
L S + Q + V ++G
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 695 ------GL-GGSAYVLYAVV---------------------FWLLMAYR-QKIAKFSAIY 725
G G S ++ AV F++ R + +++
Sbjct: 263 LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI--GVRCYEAYPNTSLP 320
Query: 726 RSEVTDIVERT------MFYIEYVVRHNGAHHLRTASTRLTWYQYLNLDVLLVIGL--G- 776
S + D +E M + + ++ + +L + I L G
Sbjct: 321 PSILEDSLENNEGVPSPML----SISNLTQEQVQDYVNKTN--SHLPAGKQVEISLVNGA 374
Query: 777 ----LGGSAYVLYAVVFWLLMALRK-SGKNGASRTKSTHSRSAVDRCLKRPHCLDNIESP 831
+ G LY + + LRK +G +++ S +R LK + + SP
Sbjct: 375 KNLVVSGPPQSLYGLN----LTLRKAKAPSGLDQSRIPFS----ERKLKFSNRFLPVASP 426
Query: 832 RQSTTFEHT 840
F H+
Sbjct: 427 -----F-HS 429
Score = 42.0 bits (98), Expect = 0.001
Identities = 101/595 (16%), Positives = 170/595 (28%), Gaps = 236/595 (39%)
Query: 177 PNVIEIGGIHITPGKPLPQDI--------EDFINASPAGVIYFAMGTFVDGENLTPKRKA 228
P + G + +P E F P FA D E P A
Sbjct: 8 PLTLSHGSLEHV--LLVPTASFFIASQLQEQFNKILPEPTEGFA----ADDE---PTTPA 58
Query: 229 NLLKLFSGLKQWIIWKIDPSN---FQETLPPNVKVG-KWFPQ-----NDI--LAPNFPNI 277
L+ F G + ++PS F + L + F NDI LA
Sbjct: 59 ELVGKFLGY---VSSLVEPSKVGQFDQVL----NLCLTEFENCYLEGNDIHALAAKLLQE 111
Query: 278 VGN------------FSAFEFGKFMMDRATDTS--------------------------D 299
+A K D+ ++++ +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFE 171
Query: 300 EL-----LSTPLFRKLINVGTADFQD-----SDGIPVYNISYDVIIAENHFMQ------- 342
EL L LI + D V+ +++ +++
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL----EWLENPSNTPD 227
Query: 343 EIY--GAALSEKFACPLIT-YQPILTPPH---AAHLLGNYYNPAFMADYKLRYTGNM--- 393
+ Y +S CPLI Q L H A LLG + P + Y TG+
Sbjct: 228 KDYLLSIPIS----CPLIGVIQ--LA--HYVVTAKLLG--FTPGELRSYLKGATGHSQGL 277
Query: 394 ---------TFWQRLINSLLTAYEILYQNFIYLPRIDTIMRTHFAKVGAVKWPYIKDILR 444
W+ S+ A +L+ FI + R + A +P
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLF--FIGV-------RCYEA------YP------- 315
Query: 445 ARNALTLVDTHHLVTDPKPNN---PNVIEIGGIHITP-----GKPLPQDIEDFI---NAS 493
+L ++ D NN P +P Q ++D++ N+
Sbjct: 316 -NTSLPP----SILEDSLENNEGVP----------SPMLSISNLTQEQ-VQDYVNKTNSH 359
Query: 494 --PAGVIYFAM--G--TFVDGENLT--PK---------RKANLLKLFSGLKQWIIW---- 532
+ ++ G V ++ P+ RK K SGL Q I
Sbjct: 360 LPAGKQVEISLVNGAKNLV----VSGPPQSLYGLNLTLRK---AKAPSGLDQSRIPFSER 412
Query: 533 KIDPSN-FQETLP---P---------NVKVGKWFPQNDILAHP---KCVLFITHGGIH-- 574
K+ SN F LP P + + K +N++ + + ++ T G
Sbjct: 413 KLKFSNRF---LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
Query: 575 ----SVLESLYHGVPMV-GIPVFADQAQNLLAL--------QEKGMGEMVEFNFE 616
S+ E + V + +PV + A G+G + N +
Sbjct: 470 VLSGSISERI---VDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 36.2 bits (83), Expect = 0.057
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 20/87 (22%)
Query: 2 MDRATDTSDELLSTPLFRKLINVGTADFQDSDGIPVYNISYDVIIAENHFMQEIYGAALS 61
+ A+D L++ L + ++ D Q IPVY+ ++D + ++ ++S
Sbjct: 432 LVPASD----LINKDLVKNNVSFNAKDIQ----IPVYD-TFD---GSD--LRV-LSGSIS 476
Query: 62 EKFACPLITYQPI----LTPPHAAHLL 84
E+ I P+ T A H+L
Sbjct: 477 ER-IVDCIIRLPVKWETTTQFKATHIL 502
Score = 30.4 bits (68), Expect = 2.9
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 34/70 (48%)
Query: 603 QEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQ-KIAKFSAIYRSEVTDIVERTM----- 656
QE+GMG M DL Y+ K A+ +V + +
Sbjct: 1627 QEQGMG-M--------DL------------YKTSKAAQ-------DVWNRADNHFKDTYG 1658
Query: 657 FYIEYVVRHN 666
F I +V +N
Sbjct: 1659 FSILDIVINN 1668
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 42.1 bits (98), Expect = 3e-04
Identities = 26/165 (15%), Positives = 48/165 (29%), Gaps = 11/165 (6%)
Query: 497 VIYFAMGTFVDGENLTPKRKANLLKLFSGLKQWIIWKIDPSNFQETLPPNVKVGKWFPQN 556
+I F + E+L +R + Q+ V + +
Sbjct: 66 IIQFGRNYSSEFEHLVQERGGQRESQKIPIDQFGCGDTARQYVLMNGKLKVIGFDFSTKM 125
Query: 557 DILAHPKCVLFITHGGIHSVLESLYHGVPMVGIP----VFADQAQNLLALQEKGMGEMVE 612
+ L I+H G S+L+SL P++ + Q Q E G
Sbjct: 126 QSIIRDYSDLVISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWSCA 185
Query: 613 FNFEYEDLKRKLDKVLNENSYRQKIAKFSAIYRSEVTDIVERTMF 657
L L S +K+ F + ++ T++
Sbjct: 186 PTE--TGLIAGL-----RASQTEKLKPFPVSHNPSFERLLVETIY 223
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB:
3hbn_A*
Length = 282
Score = 34.0 bits (76), Expect = 0.17
Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 1/55 (1%)
Query: 552 WFPQNDILAHPKCVLFITHGGIHSVLESLYHGVPMVGIPVFADQAQNLLALQEKG 606
+N + I V E+L I +Q L +KG
Sbjct: 214 IDHENIAKLMNESNKLIISASS-LVNEALLLKANFKAICYVKNQESTATWLAKKG 267
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 1.4
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 5/50 (10%)
Query: 593 ADQAQNLLALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQKIAKFSA 642
A +EK ++ E+N + +++K N R F
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSE---QVEKNKINN--RIADKAFYQ 147
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural
genomic center for structural genomics, JCSG; 2.25A
{Bacteroides ovatus}
Length = 520
Score = 30.6 bits (68), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 80 AAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSL 114
+LG + N +F + Y GN + W + NSL
Sbjct: 166 IITVLGKFGNQSFSSSADRIYNGNTSAWYKFANSL 200
Score = 30.6 bits (68), Expect = 2.7
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 369 AAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSL 403
+LG + N +F + Y GN + W + NSL
Sbjct: 166 IITVLGKFGNQSFSSSADRIYNGNTSAWYKFANSL 200
>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class
GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A
{Glycine max} PDB: 3fhs_A*
Length = 219
Score = 28.8 bits (65), Expect = 6.2
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 14/65 (21%)
Query: 600 LALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQKIAKFS----AIYRSEVTDIVERT 655
+AL EKG +++ ++ EDL+ K +L N +KI I S + V+
Sbjct: 21 IALAEKG----IKYEYKEEDLRNKSPLLLQMNPVHKKIPVLIHNGKPICESLI--AVQ-- 72
Query: 656 MFYIE 660
YIE
Sbjct: 73 --YIE 75
>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase;
HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*
Length = 241
Score = 28.9 bits (65), Expect = 6.2
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 14/65 (21%)
Query: 600 LALQEKGMGEMVEFNFEYEDLKRKLDKVLNENSYRQKIA----KFSAIYRSEVTDIVERT 655
L L+ KG + +LK K + +N + + IY S + E
Sbjct: 40 LVLKAKG----IRHEVININLKNKPEWFFKKNPFGLVPVLENSQGQLIYESAI--TCE-- 91
Query: 656 MFYIE 660
Y++
Sbjct: 92 --YLD 94
>3cgh_A SUSD homolog; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2; 1.70A
{Bacteroides thetaiotaomicron vpi-5482} SCOP: a.118.8.6
Length = 516
Score = 29.1 bits (64), Expect = 8.3
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 80 AAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSL 114
A L N + Y G++ W R NSL
Sbjct: 164 AIATLNENSNEQLVPTADYIYKGDVKKWIRFANSL 198
Score = 29.1 bits (64), Expect = 8.3
Identities = 10/35 (28%), Positives = 13/35 (37%)
Query: 369 AAHLLGNYYNPAFMADYKLRYTGNMTFWQRLINSL 403
A L N + Y G++ W R NSL
Sbjct: 164 AIATLNENSNEQLVPTADYIYKGDVKKWIRFANSL 198
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 28.3 bits (63), Expect = 9.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 680 WYQYLNLDVLLVIGLGLG 697
+ L +LL+ LG
Sbjct: 156 FALKLKAKMLLISHDNLG 173
Score = 28.3 bits (63), Expect = 9.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 761 WYQYLNLDVLLVIGLGLG 778
+ L +LL+ LG
Sbjct: 156 FALKLKAKMLLISHDNLG 173
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 28.1 bits (63), Expect = 9.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 680 WYQYLNLDVLLVIGLGLG 697
+ L + VLLV + +G
Sbjct: 135 LIKALQIPVLLVSAIKVG 152
Score = 28.1 bits (63), Expect = 9.5
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 761 WYQYLNLDVLLVIGLGLG 778
+ L + VLLV + +G
Sbjct: 135 LIKALQIPVLLVSAIKVG 152
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC,
structu genomics, protein structure initiative; 1.76A
{Novosphingobium aromaticivorans}
Length = 205
Score = 28.1 bits (62), Expect = 9.6
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 608 GEMVEFNFEYEDLKRKLDKVLNE 630
G ++ ++ L+ ++ LNE
Sbjct: 176 GILLAGTHDWASLRPQILARLNE 198
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 28.5 bits (64), Expect = 9.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 13/43 (30%)
Query: 770 LLVIGLGL-GGSAYVLYAVVFWLLMALRKSGKN--GASRTKST 809
+ ++GLGL GGS LL L + + G +R++S
Sbjct: 11 VCILGLGLIGGS----------LLRDLHAANHSVFGYNRSRSG 43
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.431
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,821,932
Number of extensions: 890015
Number of successful extensions: 1859
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1794
Number of HSP's successfully gapped: 77
Length of query: 847
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 745
Effective length of database: 3,853,851
Effective search space: 2871118995
Effective search space used: 2871118995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)