BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10510
         (91 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K44|A Chain A, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|B Chain B, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|C Chain C, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
 pdb|3K44|D Chain D, Crystal Structure Of Drosophila Melanogaster Pur-Alpha
          Length = 146

 Score = 75.1 bits (183), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 36/41 (87%)

Query: 42  YCTVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTE 82
           +  VSQTI RGGPRSQIA+PAQGMIEFRDALTDLLEEFG  
Sbjct: 106 FLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGAN 146


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.140    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,690,718
Number of Sequences: 62578
Number of extensions: 92399
Number of successful extensions: 164
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 2
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)