Query psy10510
Match_columns 91
No_of_seqs 84 out of 86
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 20:04:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k44_A Purine-rich binding pro 100.0 8.7E-29 3E-33 178.6 9.3 72 19-91 6-77 (146)
2 3k44_A Purine-rich binding pro 100.0 2.3E-28 8E-33 176.4 9.0 62 20-81 84-145 (146)
3 3n8b_A Uncharacterized protein 98.7 5.9E-08 2E-12 66.6 7.5 62 21-82 9-74 (98)
4 3nm7_A Uncharacterized protein 97.5 0.00047 1.6E-08 49.0 7.5 61 21-81 16-80 (127)
5 2x5h_A ORF 131; viral protein; 71.1 8 0.00027 26.0 4.8 54 26-80 31-85 (97)
6 2inb_A Hypothetical protein; Z 47.4 12 0.00041 26.5 2.5 54 22-84 29-89 (140)
7 4e1p_A Protein LSR2; anti-para 46.7 20 0.0007 22.0 3.2 26 53-78 29-54 (61)
8 3oak_C Transcription elongatio 43.3 28 0.00097 19.1 3.1 19 66-84 4-22 (31)
9 4e1r_A Protein LSR2; anti-para 37.7 31 0.0011 22.7 3.2 26 53-78 54-79 (86)
10 1wi9_A Protein C20ORF116 homol 30.1 13 0.00043 23.8 0.3 11 38-48 57-67 (72)
11 4h51_A Aspartate aminotransfer 28.0 20 0.00069 27.7 1.2 18 59-76 83-100 (420)
12 4e17_B Catenin alpha-1; four h 25.0 43 0.0015 19.2 2.0 19 63-81 19-37 (40)
13 1qb5_D Protein (heat labIle en 24.2 66 0.0023 21.5 3.0 23 22-44 18-40 (99)
14 3lh2_S 4E10_1VI7A_S0_002_N (T8 23.5 29 0.00098 20.5 1.0 22 55-76 43-64 (76)
15 4fp5_D LT-IIB, heat-labIle ent 22.5 66 0.0022 21.4 2.7 23 22-44 18-40 (98)
16 2dlx_A UBX domain-containing p 22.3 1.1E+02 0.0037 20.5 3.9 26 62-87 121-146 (153)
17 1ylx_A Hypothetical protein AP 20.4 84 0.0029 21.3 3.0 21 63-83 11-31 (103)
No 1
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=8.7e-29 Score=178.61 Aligned_cols=72 Identities=21% Similarity=0.224 Sum_probs=65.7
Q ss_pred EeEeeeeCceEEEEEcccCCCcceEEEEEeccCCCCcceEEEecchHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q psy10510 19 VAVVLTKPILVYCTVVLTKPILVYCTVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELP 91 (91)
Q Consensus 19 ~~~v~~~e~KrFY~DlkeN~RGRFLRIsE~~~rGg~RsqIalPaqg~~EFRdaL~dlie~yg~~~~~~~~~Lp 91 (91)
.++.+..|+|+||||||||+|||||||||++ ++|+||||+||++||+||||+|++|||.|+..+++.+.+||
T Consensus 6 ~S~~i~ie~KrfYlDlKeN~RGrfLkIsE~~-~~g~rs~I~lp~~~~~efrd~L~~~ie~~~~~g~~~~~~~~ 77 (146)
T 3k44_A 6 ATKMLQIQSKRFYLDVKQNRRGRFIKVAEIG-ADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLP 77 (146)
T ss_dssp EEEEEEETTEEEEEEEEEETTEEEEEEEEEC-TTCCEEEEEECHHHHHHHHHHHHHHHHHHHTSCSCCSSCCC
T ss_pred cceeEEEeceEEEEEecccCCeEEEEEEEec-CCCcceEEEEEhhHHHHHHHHHHHHHHHHHhcCCCccccCC
Confidence 3568899999999999999999999999996 46899999999999999999999999999988777777776
No 2
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR repeat, PUR domain, whirly fold, DNA binding protein, RNA binding protein; 2.10A {Drosophila melanogaster}
Probab=99.95 E-value=2.3e-28 Score=176.38 Aligned_cols=62 Identities=58% Similarity=0.800 Sum_probs=59.4
Q ss_pred eEeeeeCceEEEEEcccCCCcceEEEEEeccCCCCcceEEEecchHHHHHHHHHHHHHHhcC
Q psy10510 20 AVVLTKPILVYCTVVLTKPILVYCTVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGT 81 (91)
Q Consensus 20 ~~v~~~e~KrFY~DlkeN~RGRFLRIsE~~~rGg~RsqIalPaqg~~EFRdaL~dlie~yg~ 81 (91)
++++++++|+||||||+|+|||||||||+.++|+.|++|+||++||++|||+|++|+|+||.
T Consensus 84 s~~i~~~~k~fyfDl~~N~RGrFLRIsE~~~~~~~R~~I~iP~~g~~~Fr~~l~~~~~~~~~ 145 (146)
T 3k44_A 84 SEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGA 145 (146)
T ss_dssp EEEEEETTEEEEEEEEEETTEEEEEEEEEESSCCCCEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred chheeccCceEEEEecccCcceEEEEEEeeccCCCcceEEecHHHHHHHHHHHHHHHHHhcC
Confidence 56899999999999999999999999999878899999999999999999999999999985
No 3
>3n8b_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, whirly fold, RNA binding, binding, nucleic acid binding protein; HET: MSE; 1.90A {Borrelia burgdorferi}
Probab=98.69 E-value=5.9e-08 Score=66.56 Aligned_cols=62 Identities=18% Similarity=0.233 Sum_probs=52.9
Q ss_pred EeeeeCceEEEEEcccCCCcc-eEEEEEec--cCCC-CcceEEEecchHHHHHHHHHHHHHHhcCC
Q psy10510 21 VVLTKPILVYCTVVLTKPILV-YCTVSQTI--PRGG-PRSQIAIPAQGMIEFRDALTDLLEEFGTE 82 (91)
Q Consensus 21 ~v~~~e~KrFY~DlkeN~RGR-FLRIsE~~--~rGg-~RsqIalPaqg~~EFRdaL~dlie~yg~~ 82 (91)
+|+++-.+.||||||+|..|. ||.|+|-. ..|+ .|..|.|+..-+..|.++|++.++.--..
T Consensus 9 kv~~agkRTYFFDVK~nr~gD~yLtITESKk~~~G~ferHkI~LYkEDf~~F~e~L~e~i~~I~~~ 74 (98)
T 3n8b_A 9 KMFTESERTYFMNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENMNEFESNLLKAIAVIKQK 74 (98)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCeEEEEEeecccCCCeEEEEEeecccCCCCeeeEEEEEEHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888999999999999 99999975 2244 68999999999999999999988876544
No 4
>3nm7_A Uncharacterized protein; PUR-alpha, PUR repeat, PUR domain, PURA, whirly fold, RNA BI DNA binding, nucleic acid binding protein; 2.20A {Borrelia burgdorferi}
Probab=97.47 E-value=0.00047 Score=49.01 Aligned_cols=61 Identities=15% Similarity=0.167 Sum_probs=49.1
Q ss_pred EeeeeCceEEEEEcccCCCcc-eEEEEEecc--CCC-CcceEEEecchHHHHHHHHHHHHHHhcC
Q psy10510 21 VVLTKPILVYCTVVLTKPILV-YCTVSQTIP--RGG-PRSQIAIPAQGMIEFRDALTDLLEEFGT 81 (91)
Q Consensus 21 ~v~~~e~KrFY~DlkeN~RGR-FLRIsE~~~--rGg-~RsqIalPaqg~~EFRdaL~dlie~yg~ 81 (91)
+|+++-.+.||||||+|..|. ||-|+|-.. .|+ .|..|.|=..-+..|.++|++.++.--.
T Consensus 16 kv~~aGkRTYFFDVK~tR~gDyyLtITESKk~~~G~feKHKIfLYkEDF~kF~e~L~e~i~~I~~ 80 (127)
T 3nm7_A 16 KLFTESERTYFFNVKENRKGDYFLNIVESKRSPSGDFERHSIFVYEENINEFESNLLKAIAVIKQ 80 (127)
T ss_dssp EECCSSSEEEEEEEEECTTSCEEEEEEEEEECTTSCEEEEEEEEEGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhhCCCeeEEEEeecccCCCeEEEEEeecccCCCCeeEEEEEEEHHHHHHHHHHHHHHHHHHHH
Confidence 344556777999999999996 799999652 233 5889999999999999999988776543
No 5
>2x5h_A ORF 131; viral protein; 1.80A {Sulfolobus islandicus rudivirus 1} PDB: 2x5g_A* 2x5t_A
Probab=71.11 E-value=8 Score=26.03 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=38.3
Q ss_pred CceEEEEEcccCCCcceEEEEEec-cCCCCcceEEEecchHHHHHHHHHHHHHHhc
Q psy10510 26 PILVYCTVVLTKPILVYCTVSQTI-PRGGPRSQIAIPAQGMIEFRDALTDLLEEFG 80 (91)
Q Consensus 26 e~KrFY~DlkeN~RGRFLRIsE~~-~rGg~RsqIalPaqg~~EFRdaL~dlie~yg 80 (91)
.-++.-+-+.--|-|-=+|.|++. ++...|.||-|.++-+.++. ++++|+++|+
T Consensus 31 g~~rivlQiNAvP~g~~ir~SMTiHs~nNfkKQIGiTa~DA~dL~-lIa~FLeKYS 85 (97)
T 2x5h_A 31 GIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAEDLK-LIAEFLEKYS 85 (97)
T ss_dssp TCSSEEEEEEEEEETTEEEEEEEEEETTEEEEEEEECGGGHHHHH-HHHHHHHHTH
T ss_pred CcceEEEEeeccCCCCeeEEEEEEecccchhhhcCCCcccHHHHH-HHHHHHHHHH
Confidence 445666777777889899999988 33456889999998765543 4555555553
No 6
>2inb_A Hypothetical protein; ZP_00107633.1, structural genomics, PS protein structure initiative, joint center for structural G JCSG; HET: MSE GOL; 1.60A {Nostoc punctiforme} SCOP: c.52.1.32 PDB: 2okf_A*
Probab=47.40 E-value=12 Score=26.53 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=30.3
Q ss_pred eeeeCceEEEEEcccCCCcceEEEEEeccCCCCcceEEE-------ecchHHHHHHHHHHHHHHhcCCCC
Q psy10510 22 VLTKPILVYCTVVLTKPILVYCTVSQTIPRGGPRSQIAI-------PAQGMIEFRDALTDLLEEFGTEDG 84 (91)
Q Consensus 22 v~~~e~KrFY~DlkeN~RGRFLRIsE~~~rGg~RsqIal-------Paqg~~EFRdaL~dlie~yg~~~~ 84 (91)
.++...+.+|.||+-.. |=-+|. + ...||| ..|-+.+|+.||++|+-+-.-+..
T Consensus 29 ~l~~~~~~~~iDLgAek----~iaAer---~--~~kIAVEIKsF~~~~S~i~df~~AlGQf~~Yr~~L~~ 89 (140)
T 2inb_A 29 TISVGGVNLSIDLGAEK----LIAAER---E--GEKIAVEVKSFLERSSAISEFHTALGQFINYRGALRR 89 (140)
T ss_dssp CCEETTEEC-------C----CEEEEE---T--TEEEEEEECCSCSSSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECcEEEEeccchHH----HHHhhh---c--CceEEEEEeccccCCCccHHHHHHHHHHHHHHHHHHh
Confidence 44557889999998765 223343 1 234544 467899999999999887655433
No 7
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=46.69 E-value=20 Score=22.00 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.3
Q ss_pred CCcceEEEecchHHHHHHHHHHHHHH
Q psy10510 53 GPRSQIAIPAQGMIEFRDALTDLLEE 78 (91)
Q Consensus 53 g~RsqIalPaqg~~EFRdaL~dlie~ 78 (91)
|.--.|=|...-+.+||++|..||+.
T Consensus 29 G~~YeIDLs~~nA~~lr~~L~~yi~~ 54 (61)
T 4e1p_A 29 GVTYEIDLSTKNATKLRGDLKQWVAA 54 (61)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 44558889999999999999999985
No 8
>3oak_C Transcription elongation factor SPT6; transcription factor complex, nucleus; 2.15A {Saccharomyces cerevisiae}
Probab=43.35 E-value=28 Score=19.08 Aligned_cols=19 Identities=16% Similarity=0.476 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhcCCCC
Q psy10510 66 IEFRDALTDLLEEFGTEDG 84 (91)
Q Consensus 66 ~EFRdaL~dlie~yg~~~~ 84 (91)
....++|.++.+-||.+.+
T Consensus 4 ~~~~~aledm~eiFGdG~d 22 (31)
T 3oak_C 4 THMSDKIDEMYDIFGDGHD 22 (31)
T ss_dssp HHHHHHHHHHHHHHCCSCT
T ss_pred hhHHHHHHHHHHHhCCCch
Confidence 4568999999999998754
No 9
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=37.67 E-value=31 Score=22.70 Aligned_cols=26 Identities=15% Similarity=0.339 Sum_probs=22.7
Q ss_pred CCcceEEEecchHHHHHHHHHHHHHH
Q psy10510 53 GPRSQIAIPAQGMIEFRDALTDLLEE 78 (91)
Q Consensus 53 g~RsqIalPaqg~~EFRdaL~dlie~ 78 (91)
|.--.|=|.+.-+.+||++|..||+.
T Consensus 54 Gv~YEIDLS~~NA~kLR~aLapyI~a 79 (86)
T 4e1r_A 54 GVTYEIDLSTKNATKLRGDLKQWVAA 79 (86)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHHh
Confidence 45558999999999999999999985
No 10
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=30.11 E-value=13 Score=23.76 Aligned_cols=11 Identities=0% Similarity=-0.034 Sum_probs=9.5
Q ss_pred CCcceEEEEEe
Q psy10510 38 PILVYCTVSQT 48 (91)
Q Consensus 38 ~RGRFLRIsE~ 48 (91)
.||+|+.||+-
T Consensus 57 DRGKfIyIs~e 67 (72)
T 1wi9_A 57 DRGKFIYITPS 67 (72)
T ss_dssp TTCCEEECCCS
T ss_pred CCCCEEEecHH
Confidence 59999999975
No 11
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=27.95 E-value=20 Score=27.65 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=16.7
Q ss_pred EEecchHHHHHHHHHHHH
Q psy10510 59 AIPAQGMIEFRDALTDLL 76 (91)
Q Consensus 59 alPaqg~~EFRdaL~dli 76 (91)
-+|..|+.+||+++.+++
T Consensus 83 Y~p~~G~p~lr~aia~~~ 100 (420)
T 4h51_A 83 YLPISGYQPFIDEAVKII 100 (420)
T ss_dssp CCCTTCCHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHh
Confidence 679999999999999987
No 12
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=25.02 E-value=43 Score=19.24 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=14.8
Q ss_pred chHHHHHHHHHHHHHHhcC
Q psy10510 63 QGMIEFRDALTDLLEEFGT 81 (91)
Q Consensus 63 qg~~EFRdaL~dlie~yg~ 81 (91)
..-...|.||.+|+.+|-.
T Consensus 19 ~eCnavrqALQdLlseY~~ 37 (40)
T 4e17_B 19 AECNAVRQALQDLLSEYMG 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445689999999999853
No 13
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=24.23 E-value=66 Score=21.46 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.4
Q ss_pred eeeeCceEEEEEcccCCCcceEE
Q psy10510 22 VLTKPILVYCTVVLTKPILVYCT 44 (91)
Q Consensus 22 v~~~e~KrFY~DlkeN~RGRFLR 44 (91)
|.-.|-|.|--|+..|.||-|+-
T Consensus 18 v~gv~l~kyi~din~nt~g~yvv 40 (99)
T 1qb5_D 18 VEGVELTKYISDINNNTDGMYVV 40 (99)
T ss_dssp EEEECEEEEEEECSTTTCEEEEE
T ss_pred HhhhhhhhhhhhccCCCccEEEE
Confidence 45567789999999999999974
No 14
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=23.47 E-value=29 Score=20.52 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=16.8
Q ss_pred cceEEEecchHHHHHHHHHHHH
Q psy10510 55 RSQIAIPAQGMIEFRDALTDLL 76 (91)
Q Consensus 55 RsqIalPaqg~~EFRdaL~dli 76 (91)
.-+|.||..-+.+|.+.|.++.
T Consensus 43 ~l~v~vp~~~~~~~~~~L~d~t 64 (76)
T 3lh2_S 43 LLRVALPAAKVAEFSAKLADFS 64 (76)
T ss_dssp EEEEEECC-CC-CHHHHHHHHH
T ss_pred EEEEEECHHHHHHHHHHHHHHh
Confidence 4488999999999999988864
No 15
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=22.48 E-value=66 Score=21.44 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.1
Q ss_pred eeeeCceEEEEEcccCCCcceEE
Q psy10510 22 VLTKPILVYCTVVLTKPILVYCT 44 (91)
Q Consensus 22 v~~~e~KrFY~DlkeN~RGRFLR 44 (91)
|.-.|-|.|--|+..|.||-|+-
T Consensus 18 v~gv~l~kyi~din~nt~g~yvv 40 (98)
T 4fp5_D 18 VEGVELTKYISDINNNTDGMYVV 40 (98)
T ss_dssp EEEEEEEEEEEECSTTTCEEEEE
T ss_pred HhhhhhhhhhhhccCCCccEEEE
Confidence 44557788999999999999974
No 16
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=22.26 E-value=1.1e+02 Score=20.47 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=20.6
Q ss_pred cchHHHHHHHHHHHHHHhcCCCCCCC
Q psy10510 62 AQGMIEFRDALTDLLEEFGTEDGGYK 87 (91)
Q Consensus 62 aqg~~EFRdaL~dlie~yg~~~~~~~ 87 (91)
-....+|.+.|.++++.|+..+...+
T Consensus 121 g~~~~~fl~~L~~~l~~~~~~~~~~~ 146 (153)
T 2dlx_A 121 QLDVSSFLDQVTGFLGEHGQLDGLSS 146 (153)
T ss_dssp SCCHHHHHHHHHHHHHHTCSCSSCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCC
Confidence 34678999999999999998765433
No 17
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=20.36 E-value=84 Score=21.32 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.3
Q ss_pred chHHHHHHHHHHHHHHhcCCC
Q psy10510 63 QGMIEFRDALTDLLEEFGTED 83 (91)
Q Consensus 63 qg~~EFRdaL~dlie~yg~~~ 83 (91)
+.+.||.+.|..++++||-++
T Consensus 11 ~ii~el~~~~~~~l~~Ygld~ 31 (103)
T 1ylx_A 11 VVIEEFIDTLEPMMEAYGLDQ 31 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHhCCcc
Confidence 567899999999999999753
Done!