RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10510
(91 letters)
>3k44_A Purine-rich binding protein-alpha, isoform B; PUR-alpha, PUR
repeat, PUR domain, whirly fold, DNA binding protein,
RNA binding protein; 2.10A {Drosophila melanogaster}
Length = 146
Score = 67.0 bits (163), Expect = 6e-16
Identities = 34/41 (82%), Positives = 36/41 (87%)
Query: 42 YCTVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTE 82
+ VSQTI RGGPRSQIA+PAQGMIEFRDALTDLLEEFG
Sbjct: 106 FLRVSQTITRGGPRSQIALPAQGMIEFRDALTDLLEEFGAN 146
Score = 35.8 bits (82), Expect = 4e-04
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 51 RGGPRSQIAIPAQGMIEFRDALTDLLEEFGTEDGGYKGELP 91
G RSQI + EFRD L+ + + + LP
Sbjct: 37 ADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLP 77
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 28.0 bits (63), Expect = 0.22
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
K +L++C R G R+ A
Sbjct: 57 KKVLLHC-------RAGRRALDA 72
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 28.1 bits (63), Expect = 0.28
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
+ I VY G ++ A
Sbjct: 57 RDIYVYG-------AGDEQTSQA 72
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 27.6 bits (62), Expect = 0.29
Identities = 5/23 (21%), Positives = 8/23 (34%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
+ I VY G ++ A
Sbjct: 53 RDIYVYG-------AGDEQTSQA 68
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 26.5 bits (59), Expect = 0.99
Identities = 6/23 (26%), Positives = 12/23 (52%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
KP++V+C + R+ +A
Sbjct: 83 KPVVVFC-------KTAARAALA 98
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 26.0 bits (58), Expect = 1.0
Identities = 12/55 (21%), Positives = 16/55 (29%), Gaps = 24/55 (43%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFG----TEDGGYK 87
+ VYC G +S A ++L E G GG K
Sbjct: 42 DTVKVYC-------NAGRQSGQA-------------KEILSEMGYTHVENAGGLK 76
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: c.46.1.3
Length = 129
Score = 26.2 bits (58), Expect = 1.1
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
I+V C + G RS A
Sbjct: 83 DNIIVGC-------QSGGRSIKA 98
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 26.1 bits (58), Expect = 1.1
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 7/23 (30%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIA 59
P++V C G S+ A
Sbjct: 59 TPVMVMC-------YHGNSSKGA 74
>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase;
2.50A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB:
3s8r_A 1oqz_A
Length = 689
Score = 26.1 bits (57), Expect = 1.9
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 48 TIPRGGPRSQIAIPAQGMIEFRDALTDLLEEFGTED 83
+ P G + A+ R A+ + ++G D
Sbjct: 546 STPYGVRDPKAAVDQ-----LRTAIANTKRKYGAID 576
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 25.4 bits (56), Expect = 2.0
Identities = 4/27 (14%), Positives = 6/27 (22%), Gaps = 7/27 (25%)
Query: 37 KPILVYCTVSQTIPRGGPRSQIAIPAQ 63
K +VY G +
Sbjct: 72 KTYVVYD-------WTGGTTLGKTALL 91
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for
structural genomics, protein struct initiative, PSI,
structural genomics; 2.00A {Pseudomonas aeruginosa}
SCOP: d.291.1.1
Length = 78
Score = 23.6 bits (51), Expect = 6.6
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 56 SQIAIPAQGMIEFRDALTDLLEEFGTEDG 84
+ IP + D L +LLE+F T +G
Sbjct: 1 GHMLIPHDLLEA--DTLNNLLEDFVTREG 27
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.419
Gapped
Lambda K H
0.267 0.0814 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,404,857
Number of extensions: 71224
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 14
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)